Multiple sequence alignment - TraesCS3A01G270900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G270900 chr3A 100.000 2360 0 0 1 2360 498238068 498235709 0.000000e+00 4359
1 TraesCS3A01G270900 chr3A 92.902 789 48 4 1 781 743222753 743223541 0.000000e+00 1140
2 TraesCS3A01G270900 chr2A 93.878 784 43 3 1 781 48334242 48333461 0.000000e+00 1177
3 TraesCS3A01G270900 chr2A 93.726 781 46 2 1 781 717398434 717399211 0.000000e+00 1168
4 TraesCS3A01G270900 chr4A 93.766 786 44 2 3 783 489102963 489103748 0.000000e+00 1175
5 TraesCS3A01G270900 chr4A 93.266 787 42 7 3 781 489097510 489098293 0.000000e+00 1149
6 TraesCS3A01G270900 chr4A 92.940 779 53 2 1 779 552211543 552212319 0.000000e+00 1133
7 TraesCS3A01G270900 chr7A 92.730 784 49 7 1 781 626352847 626352069 0.000000e+00 1125
8 TraesCS3A01G270900 chr7A 92.494 786 54 4 1 781 626331037 626330252 0.000000e+00 1120
9 TraesCS3A01G270900 chr5A 92.532 790 50 6 1 781 616562872 616562083 0.000000e+00 1123
10 TraesCS3A01G270900 chr3D 92.952 752 32 9 1619 2360 375198967 375198227 0.000000e+00 1075
11 TraesCS3A01G270900 chr3D 89.987 769 25 15 781 1532 375203811 375203078 0.000000e+00 946
12 TraesCS3A01G270900 chr3B 84.954 864 54 26 924 1760 489358663 489357849 0.000000e+00 806
13 TraesCS3A01G270900 chr3B 93.321 524 24 3 1846 2360 489357847 489357326 0.000000e+00 763
14 TraesCS3A01G270900 chr3B 97.170 106 3 0 781 886 489358769 489358664 1.860000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G270900 chr3A 498235709 498238068 2359 True 4359 4359 100.000 1 2360 1 chr3A.!!$R1 2359
1 TraesCS3A01G270900 chr3A 743222753 743223541 788 False 1140 1140 92.902 1 781 1 chr3A.!!$F1 780
2 TraesCS3A01G270900 chr2A 48333461 48334242 781 True 1177 1177 93.878 1 781 1 chr2A.!!$R1 780
3 TraesCS3A01G270900 chr2A 717398434 717399211 777 False 1168 1168 93.726 1 781 1 chr2A.!!$F1 780
4 TraesCS3A01G270900 chr4A 489102963 489103748 785 False 1175 1175 93.766 3 783 1 chr4A.!!$F2 780
5 TraesCS3A01G270900 chr4A 489097510 489098293 783 False 1149 1149 93.266 3 781 1 chr4A.!!$F1 778
6 TraesCS3A01G270900 chr4A 552211543 552212319 776 False 1133 1133 92.940 1 779 1 chr4A.!!$F3 778
7 TraesCS3A01G270900 chr7A 626352069 626352847 778 True 1125 1125 92.730 1 781 1 chr7A.!!$R2 780
8 TraesCS3A01G270900 chr7A 626330252 626331037 785 True 1120 1120 92.494 1 781 1 chr7A.!!$R1 780
9 TraesCS3A01G270900 chr5A 616562083 616562872 789 True 1123 1123 92.532 1 781 1 chr5A.!!$R1 780
10 TraesCS3A01G270900 chr3D 375198227 375198967 740 True 1075 1075 92.952 1619 2360 1 chr3D.!!$R1 741
11 TraesCS3A01G270900 chr3D 375203078 375203811 733 True 946 946 89.987 781 1532 1 chr3D.!!$R2 751
12 TraesCS3A01G270900 chr3B 489357326 489358769 1443 True 583 806 91.815 781 2360 3 chr3B.!!$R1 1579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.03101 AACCTAATCGCCCCTCTCCT 60.031 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 1640 0.100861 GGATCGAAGGTCCGTCTCAC 59.899 60.0 3.19 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 2.970639 CCTTCTTGTCGGCCTCGA 59.029 61.111 0.00 0.00 43.86 4.04
156 157 3.706594 AGGTGATGTGGACGTAGATGAAT 59.293 43.478 0.00 0.00 0.00 2.57
168 169 4.202020 ACGTAGATGAATAGAAGCGAGCAA 60.202 41.667 0.00 0.00 0.00 3.91
208 209 0.031010 AACCTAATCGCCCCTCTCCT 60.031 55.000 0.00 0.00 0.00 3.69
227 228 0.629596 TGTACAGGATCCGGAGAGGT 59.370 55.000 19.55 8.17 41.99 3.85
356 361 0.036765 TTCTGTTTCGTGGCGGCTAT 60.037 50.000 11.43 0.00 0.00 2.97
367 372 2.124570 CGGCTATGGTTGGCAGCT 60.125 61.111 0.24 0.00 35.60 4.24
410 415 4.436998 CGTGGAGAGACGTGGGCC 62.437 72.222 0.00 0.00 34.56 5.80
501 506 0.313987 GTTCCTGACCGGCAAAAAGG 59.686 55.000 0.00 1.22 0.00 3.11
503 508 0.183971 TCCTGACCGGCAAAAAGGAA 59.816 50.000 0.00 0.00 34.11 3.36
544 549 3.140814 GCTCAATCCCGCAACCCC 61.141 66.667 0.00 0.00 0.00 4.95
545 550 2.440247 CTCAATCCCGCAACCCCC 60.440 66.667 0.00 0.00 0.00 5.40
546 551 4.418328 TCAATCCCGCAACCCCCG 62.418 66.667 0.00 0.00 0.00 5.73
579 594 3.281395 TCGTGACGAGGCGTGACA 61.281 61.111 2.39 0.00 43.48 3.58
581 596 1.947146 CGTGACGAGGCGTGACAAA 60.947 57.895 0.00 0.00 43.48 2.83
587 610 0.319555 CGAGGCGTGACAAAGAGGAA 60.320 55.000 0.00 0.00 0.00 3.36
593 616 1.872952 CGTGACAAAGAGGAATGTGCA 59.127 47.619 0.00 0.00 0.00 4.57
611 634 1.746516 GCAAGGGCCTCATCTCTTCTG 60.747 57.143 6.46 0.00 0.00 3.02
617 640 2.093021 GGCCTCATCTCTTCTGAAGCTT 60.093 50.000 12.54 0.00 32.01 3.74
666 689 3.953542 AAACCACTCCAACTCTCCTTT 57.046 42.857 0.00 0.00 0.00 3.11
669 692 2.982488 ACCACTCCAACTCTCCTTTCAT 59.018 45.455 0.00 0.00 0.00 2.57
721 744 1.225373 ATCATGCCACCTACATGGGT 58.775 50.000 0.00 0.00 44.09 4.51
723 746 0.548031 CATGCCACCTACATGGGTCT 59.452 55.000 0.00 0.00 40.99 3.85
903 926 4.373116 GTCGGTCGGCTTCCAGCA 62.373 66.667 0.00 0.00 44.75 4.41
911 934 3.123620 GCTTCCAGCAGTCAGGCG 61.124 66.667 0.00 0.00 41.89 5.52
1024 1066 0.328258 CGGGAGGAGAAACAATGGGT 59.672 55.000 0.00 0.00 0.00 4.51
1207 1249 6.376177 TGTATAGTATAGGTGCACGAAATCG 58.624 40.000 11.45 0.48 46.33 3.34
1222 1264 5.920085 CGAAATCGTTGACTGTATACGAA 57.080 39.130 17.09 5.38 45.92 3.85
1223 1265 6.308710 CGAAATCGTTGACTGTATACGAAA 57.691 37.500 17.09 1.05 45.92 3.46
1224 1266 6.919188 CGAAATCGTTGACTGTATACGAAAT 58.081 36.000 17.09 10.90 45.92 2.17
1225 1267 7.388712 CGAAATCGTTGACTGTATACGAAATT 58.611 34.615 17.09 14.99 45.92 1.82
1226 1268 8.525876 CGAAATCGTTGACTGTATACGAAATTA 58.474 33.333 17.09 0.00 45.92 1.40
1227 1269 9.615779 GAAATCGTTGACTGTATACGAAATTAC 57.384 33.333 17.09 7.31 45.92 1.89
1228 1270 6.779385 TCGTTGACTGTATACGAAATTACG 57.221 37.500 12.58 4.49 40.86 3.18
1237 1279 6.272318 TGTATACGAAATTACGAAATCCGGT 58.728 36.000 0.00 0.00 43.93 5.28
1254 1296 1.963338 GTATGCAGATGAGGCGGCC 60.963 63.158 12.11 12.11 0.00 6.13
1329 1371 3.453070 GATGCTGGAGGCGGAGGTC 62.453 68.421 0.00 0.00 45.43 3.85
1365 1407 0.883814 CCGCCGACGACTAGGAGTAT 60.884 60.000 0.00 0.00 43.93 2.12
1366 1408 1.606480 CCGCCGACGACTAGGAGTATA 60.606 57.143 0.00 0.00 43.93 1.47
1367 1409 1.458827 CGCCGACGACTAGGAGTATAC 59.541 57.143 0.00 0.00 43.93 1.47
1393 1435 2.829458 CCCCTCGTCGGAGAGACC 60.829 72.222 9.16 0.00 46.92 3.85
1396 1438 0.179026 CCCTCGTCGGAGAGACCATA 60.179 60.000 9.16 0.00 46.92 2.74
1398 1440 0.589223 CTCGTCGGAGAGACCATAGC 59.411 60.000 2.53 0.00 46.92 2.97
1400 1442 1.415289 TCGTCGGAGAGACCATAGCTA 59.585 52.381 0.00 0.00 46.92 3.32
1401 1443 1.801771 CGTCGGAGAGACCATAGCTAG 59.198 57.143 0.00 0.00 46.92 3.42
1420 1462 5.105106 AGCTAGAAGTAGAAGCCTTCCTTTC 60.105 44.000 0.00 3.32 39.29 2.62
1444 1486 4.278975 TCTTTTCCCTTCTCAGCTTCTC 57.721 45.455 0.00 0.00 0.00 2.87
1500 1548 3.431725 GCGCGCTTGTTAGGCCTT 61.432 61.111 26.67 0.00 0.00 4.35
1512 1560 3.888930 TGTTAGGCCTTCCTTTTCTTGTG 59.111 43.478 12.58 0.00 40.66 3.33
1519 1567 4.144297 CCTTCCTTTTCTTGTGGTGATGA 58.856 43.478 0.00 0.00 0.00 2.92
1529 1577 4.520111 TCTTGTGGTGATGAAAGAACATGG 59.480 41.667 0.00 0.00 0.00 3.66
1532 1580 2.821378 TGGTGATGAAAGAACATGGCTG 59.179 45.455 0.00 0.00 0.00 4.85
1540 1588 4.696877 TGAAAGAACATGGCTGTGACTATG 59.303 41.667 0.00 0.00 35.22 2.23
1541 1589 3.272574 AGAACATGGCTGTGACTATGG 57.727 47.619 0.00 0.00 35.22 2.74
1542 1590 1.672881 GAACATGGCTGTGACTATGGC 59.327 52.381 0.00 0.00 35.22 4.40
1543 1591 0.914644 ACATGGCTGTGACTATGGCT 59.085 50.000 0.00 0.00 33.16 4.75
1544 1592 2.118679 ACATGGCTGTGACTATGGCTA 58.881 47.619 0.00 0.00 33.16 3.93
1545 1593 2.707791 ACATGGCTGTGACTATGGCTAT 59.292 45.455 0.00 0.00 33.16 2.97
1573 1621 1.737793 CACGGTTGTATTCCTGAAGCC 59.262 52.381 0.00 0.00 0.00 4.35
1588 1636 3.204526 TGAAGCCTTTTGCCACATTTTG 58.795 40.909 0.00 0.00 42.71 2.44
1599 1647 1.806542 CCACATTTTGGGAGTGAGACG 59.193 52.381 0.00 0.00 42.54 4.18
1600 1648 1.806542 CACATTTTGGGAGTGAGACGG 59.193 52.381 0.00 0.00 35.33 4.79
1601 1649 1.697432 ACATTTTGGGAGTGAGACGGA 59.303 47.619 0.00 0.00 0.00 4.69
1606 1654 0.898789 TGGGAGTGAGACGGACCTTC 60.899 60.000 0.00 0.00 0.00 3.46
1652 1714 3.194116 AGGCTCGTTACGGAAAAGTATGA 59.806 43.478 4.53 0.00 0.00 2.15
1658 1720 4.027132 CGTTACGGAAAAGTATGACGATGG 60.027 45.833 0.00 0.00 34.56 3.51
1660 1722 1.597663 CGGAAAAGTATGACGATGGGC 59.402 52.381 0.00 0.00 0.00 5.36
1668 1730 0.395686 ATGACGATGGGCTCATCCTG 59.604 55.000 20.95 10.32 45.20 3.86
1671 1733 1.300465 CGATGGGCTCATCCTGTCG 60.300 63.158 20.95 6.56 45.20 4.35
1755 1824 3.117046 GCTTGCTGTACGATCTTCCTAC 58.883 50.000 0.00 0.00 0.00 3.18
1765 1834 3.997021 ACGATCTTCCTACAGCAAAGTTG 59.003 43.478 0.00 0.00 0.00 3.16
1766 1835 3.372206 CGATCTTCCTACAGCAAAGTTGG 59.628 47.826 0.00 0.00 36.01 3.77
1837 1906 2.827755 TCATCTGTACAGCTACCCCAA 58.172 47.619 18.45 0.00 0.00 4.12
1916 1986 1.272769 ACGTGCAGGTAGGAGAAAGTC 59.727 52.381 10.95 0.00 0.00 3.01
1975 2045 4.432712 CCTGGGTTTTCACTTCAGTTTTG 58.567 43.478 0.00 0.00 0.00 2.44
1996 2066 4.720046 TGGGTGAAACTTTATACAGCACA 58.280 39.130 0.00 0.00 36.74 4.57
2025 2095 7.175990 TCCCTTGTTGGAACTAAATACATTCAC 59.824 37.037 0.00 0.00 38.35 3.18
2094 2164 5.940192 AGCACATCGACATCAAACTAAAA 57.060 34.783 0.00 0.00 0.00 1.52
2095 2165 6.312399 AGCACATCGACATCAAACTAAAAA 57.688 33.333 0.00 0.00 0.00 1.94
2141 2222 0.660595 CGAGACGCAACAAGACTCGT 60.661 55.000 0.00 0.00 44.35 4.18
2313 2394 3.880047 TCGTCATCGACCTTACCAAAT 57.120 42.857 0.00 0.00 41.35 2.32
2334 2415 2.601666 AGCAGCACCGTCTCCTCA 60.602 61.111 0.00 0.00 0.00 3.86
2348 2429 2.509916 CTCATCCCTGGAGCCAGC 59.490 66.667 11.07 0.00 42.35 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.514592 CGCATGGCCGATTGGAGT 60.515 61.111 1.98 0.00 37.49 3.85
46 47 2.645567 CGAGGATGTCGCGGCTAT 59.354 61.111 13.81 3.44 43.03 2.97
55 56 4.162690 GAAGGCCGCCGAGGATGT 62.163 66.667 3.05 0.00 45.00 3.06
208 209 0.629596 ACCTCTCCGGATCCTGTACA 59.370 55.000 3.57 0.00 36.31 2.90
227 228 3.646715 CAGGCCTCCGAAACCCCA 61.647 66.667 0.00 0.00 0.00 4.96
356 361 4.284550 GTGGGGAGCTGCCAACCA 62.285 66.667 26.95 12.20 38.95 3.67
410 415 2.019951 CGACTTGGACGTGGGTTCG 61.020 63.158 0.00 0.00 0.00 3.95
501 506 1.135139 TGAGCTCACTCCTATGCGTTC 59.865 52.381 13.74 0.00 42.74 3.95
503 508 0.743688 CTGAGCTCACTCCTATGCGT 59.256 55.000 13.74 0.00 42.74 5.24
579 594 1.260544 GCCCTTGCACATTCCTCTTT 58.739 50.000 0.00 0.00 37.47 2.52
581 596 1.000396 GGCCCTTGCACATTCCTCT 60.000 57.895 0.00 0.00 40.13 3.69
587 610 0.106819 GAGATGAGGCCCTTGCACAT 60.107 55.000 0.00 0.00 40.13 3.21
593 616 2.260639 TCAGAAGAGATGAGGCCCTT 57.739 50.000 0.00 0.00 0.00 3.95
617 640 5.829924 GGGATTTTCTTCCTCATGCTATTGA 59.170 40.000 0.00 0.00 35.97 2.57
635 658 6.800890 AGTTGGAGTGGTTTATAAGGGATTT 58.199 36.000 0.00 0.00 0.00 2.17
666 689 1.659022 TAGTCCCACCCCGAAAATGA 58.341 50.000 0.00 0.00 0.00 2.57
669 692 1.776063 AGTTTAGTCCCACCCCGAAAA 59.224 47.619 0.00 0.00 0.00 2.29
753 776 3.488355 ATATGAGATGGGCCTAGAGCT 57.512 47.619 4.53 0.00 43.05 4.09
903 926 2.569134 GAAGAGACGCGCCTGACT 59.431 61.111 5.73 0.00 0.00 3.41
911 934 0.033504 TGACTGGTTGGAAGAGACGC 59.966 55.000 0.00 0.00 0.00 5.19
1152 1194 1.880675 TGTTAGATCGATCGAGGAGGC 59.119 52.381 23.84 13.26 0.00 4.70
1207 1249 9.615779 GATTTCGTAATTTCGTATACAGTCAAC 57.384 33.333 3.32 0.00 0.00 3.18
1220 1262 5.235616 TCTGCATACCGGATTTCGTAATTTC 59.764 40.000 9.46 0.00 37.11 2.17
1221 1263 5.120399 TCTGCATACCGGATTTCGTAATTT 58.880 37.500 9.46 0.00 37.11 1.82
1222 1264 4.699637 TCTGCATACCGGATTTCGTAATT 58.300 39.130 9.46 0.00 37.11 1.40
1223 1265 4.330944 TCTGCATACCGGATTTCGTAAT 57.669 40.909 9.46 0.00 37.11 1.89
1224 1266 3.804786 TCTGCATACCGGATTTCGTAA 57.195 42.857 9.46 0.00 37.11 3.18
1225 1267 3.319689 TCATCTGCATACCGGATTTCGTA 59.680 43.478 9.46 0.00 37.45 3.43
1226 1268 2.102420 TCATCTGCATACCGGATTTCGT 59.898 45.455 9.46 0.00 37.45 3.85
1227 1269 2.733552 CTCATCTGCATACCGGATTTCG 59.266 50.000 9.46 0.00 37.45 3.46
1228 1270 3.070018 CCTCATCTGCATACCGGATTTC 58.930 50.000 9.46 0.00 37.45 2.17
1237 1279 2.427320 GGCCGCCTCATCTGCATA 59.573 61.111 0.71 0.00 0.00 3.14
1344 1386 3.109612 CTCCTAGTCGTCGGCGGTG 62.110 68.421 10.62 0.00 38.89 4.94
1381 1423 1.801771 CTAGCTATGGTCTCTCCGACG 59.198 57.143 0.00 0.00 43.79 5.12
1393 1435 5.538433 AGGAAGGCTTCTACTTCTAGCTATG 59.462 44.000 25.25 0.00 42.96 2.23
1396 1438 3.989056 AGGAAGGCTTCTACTTCTAGCT 58.011 45.455 25.25 8.86 42.96 3.32
1398 1440 5.423931 AGGAAAGGAAGGCTTCTACTTCTAG 59.576 44.000 25.25 0.00 42.96 2.43
1400 1442 4.172020 AGGAAAGGAAGGCTTCTACTTCT 58.828 43.478 25.25 11.64 42.96 2.85
1401 1443 4.561500 AGGAAAGGAAGGCTTCTACTTC 57.438 45.455 25.25 21.67 42.73 3.01
1420 1462 3.431673 AGCTGAGAAGGGAAAAGAAGG 57.568 47.619 0.00 0.00 0.00 3.46
1444 1486 1.291184 TGCGTGTTCTTCCATCAGCG 61.291 55.000 0.00 0.00 0.00 5.18
1500 1548 5.445069 TCTTTCATCACCACAAGAAAAGGA 58.555 37.500 0.00 0.00 30.49 3.36
1512 1560 2.821969 ACAGCCATGTTCTTTCATCACC 59.178 45.455 0.00 0.00 35.63 4.02
1519 1567 4.012374 CCATAGTCACAGCCATGTTCTTT 58.988 43.478 0.00 0.00 37.65 2.52
1529 1577 4.855715 TCACTATAGCCATAGTCACAGC 57.144 45.455 1.43 0.00 44.55 4.40
1532 1580 5.859114 CGTGATTCACTATAGCCATAGTCAC 59.141 44.000 14.54 6.77 44.55 3.67
1540 1588 3.793559 ACAACCGTGATTCACTATAGCC 58.206 45.455 14.54 0.00 31.34 3.93
1541 1589 6.145696 GGAATACAACCGTGATTCACTATAGC 59.854 42.308 14.54 2.61 32.30 2.97
1542 1590 7.382488 CAGGAATACAACCGTGATTCACTATAG 59.618 40.741 14.54 0.00 32.30 1.31
1543 1591 7.068962 TCAGGAATACAACCGTGATTCACTATA 59.931 37.037 14.54 1.15 32.30 1.31
1544 1592 6.049149 CAGGAATACAACCGTGATTCACTAT 58.951 40.000 14.54 2.98 32.30 2.12
1545 1593 5.186215 TCAGGAATACAACCGTGATTCACTA 59.814 40.000 14.54 0.72 32.30 2.74
1588 1636 1.891616 GAAGGTCCGTCTCACTCCC 59.108 63.158 0.00 0.00 0.00 4.30
1589 1637 0.959372 TCGAAGGTCCGTCTCACTCC 60.959 60.000 3.19 0.00 0.00 3.85
1590 1638 1.064357 GATCGAAGGTCCGTCTCACTC 59.936 57.143 3.19 0.00 0.00 3.51
1591 1639 1.096416 GATCGAAGGTCCGTCTCACT 58.904 55.000 3.19 0.00 0.00 3.41
1592 1640 0.100861 GGATCGAAGGTCCGTCTCAC 59.899 60.000 3.19 0.00 0.00 3.51
1593 1641 1.035932 GGGATCGAAGGTCCGTCTCA 61.036 60.000 3.19 0.00 36.58 3.27
1594 1642 0.752376 AGGGATCGAAGGTCCGTCTC 60.752 60.000 3.19 0.00 36.58 3.36
1595 1643 1.038130 CAGGGATCGAAGGTCCGTCT 61.038 60.000 3.19 0.00 36.58 4.18
1596 1644 1.437986 CAGGGATCGAAGGTCCGTC 59.562 63.158 0.00 0.00 36.58 4.79
1597 1645 2.722201 GCAGGGATCGAAGGTCCGT 61.722 63.158 0.00 0.00 36.58 4.69
1598 1646 1.961180 AAGCAGGGATCGAAGGTCCG 61.961 60.000 0.00 0.00 36.58 4.79
1599 1647 0.462759 CAAGCAGGGATCGAAGGTCC 60.463 60.000 0.00 0.00 34.92 4.46
1600 1648 0.462759 CCAAGCAGGGATCGAAGGTC 60.463 60.000 0.00 0.00 0.00 3.85
1601 1649 1.201429 ACCAAGCAGGGATCGAAGGT 61.201 55.000 0.10 0.00 43.89 3.50
1606 1654 0.804989 GTCAAACCAAGCAGGGATCG 59.195 55.000 0.10 0.00 43.89 3.69
1658 1720 1.424493 CGAAAGCGACAGGATGAGCC 61.424 60.000 0.00 0.00 42.24 4.70
1660 1722 1.135257 AGACGAAAGCGACAGGATGAG 60.135 52.381 0.00 0.00 38.92 2.90
1755 1824 2.361757 TCCATCAACACCAACTTTGCTG 59.638 45.455 0.00 0.00 0.00 4.41
1765 1834 3.356529 AATCCTGTCTCCATCAACACC 57.643 47.619 0.00 0.00 0.00 4.16
1766 1835 5.940470 AGTTTAATCCTGTCTCCATCAACAC 59.060 40.000 0.00 0.00 0.00 3.32
1916 1986 2.631160 TAGTGTTGTGGTGAAGTGGG 57.369 50.000 0.00 0.00 0.00 4.61
1918 1988 5.297547 AGTACATAGTGTTGTGGTGAAGTG 58.702 41.667 0.00 0.00 0.00 3.16
1975 2045 5.699097 TTGTGCTGTATAAAGTTTCACCC 57.301 39.130 0.00 0.00 0.00 4.61
2025 2095 8.670135 TGTATACAAGAAAAATGTATGGTTCGG 58.330 33.333 2.20 0.00 42.40 4.30
2103 2176 2.412770 TCGGTAATTCGGCGTTTTCTTC 59.587 45.455 6.85 0.00 0.00 2.87
2298 2379 2.423538 GCTGCAATTTGGTAAGGTCGAT 59.576 45.455 0.00 0.00 0.00 3.59
2334 2415 3.095163 CCTGCTGGCTCCAGGGAT 61.095 66.667 16.89 0.00 44.87 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.