Multiple sequence alignment - TraesCS3A01G270800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G270800 chr3A 100.000 8691 0 0 1 8691 498228179 498236869 0.000000e+00 16050.0
1 TraesCS3A01G270800 chr3A 93.506 154 7 3 1757 1908 582283215 582283367 8.780000e-55 226.0
2 TraesCS3A01G270800 chr3D 95.209 3903 116 23 303 4146 375192265 375196155 0.000000e+00 6106.0
3 TraesCS3A01G270800 chr3D 92.990 1612 73 17 6683 8272 375197374 375198967 0.000000e+00 2314.0
4 TraesCS3A01G270800 chr3D 96.380 1105 29 5 5596 6698 375196140 375197235 0.000000e+00 1808.0
5 TraesCS3A01G270800 chr3D 89.544 1272 119 8 4148 5414 20343633 20344895 0.000000e+00 1600.0
6 TraesCS3A01G270800 chr3D 89.902 307 21 6 1 298 375186495 375186800 3.810000e-103 387.0
7 TraesCS3A01G270800 chr3D 86.731 309 12 9 8359 8665 375203078 375203359 5.060000e-82 316.0
8 TraesCS3A01G270800 chr3D 84.615 169 13 6 5400 5568 20344921 20345076 1.170000e-33 156.0
9 TraesCS3A01G270800 chr3D 94.253 87 5 0 2841 2927 21904656 21904742 5.470000e-27 134.0
10 TraesCS3A01G270800 chr3B 95.857 2462 78 7 5596 8045 489355398 489357847 0.000000e+00 3960.0
11 TraesCS3A01G270800 chr3B 95.861 1353 24 7 2808 4146 489354079 489355413 0.000000e+00 2159.0
12 TraesCS3A01G270800 chr3B 94.838 1298 33 8 769 2051 489351741 489353019 0.000000e+00 1995.0
13 TraesCS3A01G270800 chr3B 95.683 996 38 1 1832 2822 489353042 489354037 0.000000e+00 1596.0
14 TraesCS3A01G270800 chr3B 95.772 615 15 3 5961 6574 489736608 489737212 0.000000e+00 981.0
15 TraesCS3A01G270800 chr3B 82.633 547 46 16 8131 8665 489357849 489358358 1.040000e-118 438.0
16 TraesCS3A01G270800 chr3B 84.581 454 45 13 351 780 489348678 489349130 2.240000e-115 427.0
17 TraesCS3A01G270800 chr3B 91.148 305 17 5 1 296 489348392 489348695 1.050000e-108 405.0
18 TraesCS3A01G270800 chr6A 92.552 1262 80 3 4157 5414 203766257 203767508 0.000000e+00 1797.0
19 TraesCS3A01G270800 chr6A 87.491 1463 138 16 4147 5571 18838734 18837279 0.000000e+00 1646.0
20 TraesCS3A01G270800 chr6A 92.899 169 11 1 5399 5567 203767533 203767700 2.420000e-60 244.0
21 TraesCS3A01G270800 chr6D 91.069 1254 99 8 4168 5414 115815427 115814180 0.000000e+00 1683.0
22 TraesCS3A01G270800 chr6D 88.235 170 18 1 5408 5577 115814147 115813980 1.480000e-47 202.0
23 TraesCS3A01G270800 chr7D 92.268 1177 85 4 4148 5320 530896600 530895426 0.000000e+00 1664.0
24 TraesCS3A01G270800 chr7D 84.802 783 85 17 4795 5546 602720484 602719705 0.000000e+00 756.0
25 TraesCS3A01G270800 chr7D 91.329 173 10 3 5399 5571 530895384 530895217 1.890000e-56 231.0
26 TraesCS3A01G270800 chr7D 93.103 87 6 0 2841 2927 336507053 336506967 2.550000e-25 128.0
27 TraesCS3A01G270800 chr4D 89.937 1272 119 7 4147 5414 471213836 471215102 0.000000e+00 1631.0
28 TraesCS3A01G270800 chr4D 93.506 154 8 1 1757 1908 74079351 74079504 2.440000e-55 228.0
29 TraesCS3A01G270800 chr4D 94.253 87 5 0 2841 2927 19916524 19916610 5.470000e-27 134.0
30 TraesCS3A01G270800 chr6B 87.037 1458 141 21 4150 5565 638917766 638916315 0.000000e+00 1602.0
31 TraesCS3A01G270800 chr6B 93.103 87 6 0 2841 2927 22425973 22426059 2.550000e-25 128.0
32 TraesCS3A01G270800 chr5B 86.577 1259 150 12 4162 5414 371911618 371910373 0.000000e+00 1371.0
33 TraesCS3A01G270800 chr5B 89.168 1034 100 8 4190 5219 692377352 692376327 0.000000e+00 1279.0
34 TraesCS3A01G270800 chr1A 90.021 962 82 9 4150 5103 355341222 355342177 0.000000e+00 1232.0
35 TraesCS3A01G270800 chr1A 93.103 87 6 0 2841 2927 112776006 112775920 2.550000e-25 128.0
36 TraesCS3A01G270800 chr2B 90.909 176 12 3 5397 5570 133551888 133551715 5.250000e-57 233.0
37 TraesCS3A01G270800 chr2D 92.453 159 11 1 1755 1912 79056165 79056323 8.780000e-55 226.0
38 TraesCS3A01G270800 chr7B 91.515 165 10 2 1755 1915 229095719 229095555 3.160000e-54 224.0
39 TraesCS3A01G270800 chr1B 91.925 161 9 4 1757 1916 632021077 632020920 1.140000e-53 222.0
40 TraesCS3A01G270800 chr4B 91.824 159 11 2 1757 1914 146469216 146469373 4.080000e-53 220.0
41 TraesCS3A01G270800 chr5D 93.103 87 6 0 2841 2927 6201252 6201166 2.550000e-25 128.0
42 TraesCS3A01G270800 chr1D 93.103 87 6 0 2841 2927 254498026 254498112 2.550000e-25 128.0
43 TraesCS3A01G270800 chr4A 92.308 39 3 0 30 68 314676276 314676238 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G270800 chr3A 498228179 498236869 8690 False 16050.000000 16050 100.000000 1 8691 1 chr3A.!!$F1 8690
1 TraesCS3A01G270800 chr3D 375192265 375198967 6702 False 3409.333333 6106 94.859667 303 8272 3 chr3D.!!$F5 7969
2 TraesCS3A01G270800 chr3D 20343633 20345076 1443 False 878.000000 1600 87.079500 4148 5568 2 chr3D.!!$F4 1420
3 TraesCS3A01G270800 chr3B 489348392 489358358 9966 False 1568.571429 3960 91.514429 1 8665 7 chr3B.!!$F2 8664
4 TraesCS3A01G270800 chr3B 489736608 489737212 604 False 981.000000 981 95.772000 5961 6574 1 chr3B.!!$F1 613
5 TraesCS3A01G270800 chr6A 18837279 18838734 1455 True 1646.000000 1646 87.491000 4147 5571 1 chr6A.!!$R1 1424
6 TraesCS3A01G270800 chr6A 203766257 203767700 1443 False 1020.500000 1797 92.725500 4157 5567 2 chr6A.!!$F1 1410
7 TraesCS3A01G270800 chr6D 115813980 115815427 1447 True 942.500000 1683 89.652000 4168 5577 2 chr6D.!!$R1 1409
8 TraesCS3A01G270800 chr7D 530895217 530896600 1383 True 947.500000 1664 91.798500 4148 5571 2 chr7D.!!$R3 1423
9 TraesCS3A01G270800 chr7D 602719705 602720484 779 True 756.000000 756 84.802000 4795 5546 1 chr7D.!!$R2 751
10 TraesCS3A01G270800 chr4D 471213836 471215102 1266 False 1631.000000 1631 89.937000 4147 5414 1 chr4D.!!$F3 1267
11 TraesCS3A01G270800 chr6B 638916315 638917766 1451 True 1602.000000 1602 87.037000 4150 5565 1 chr6B.!!$R1 1415
12 TraesCS3A01G270800 chr5B 371910373 371911618 1245 True 1371.000000 1371 86.577000 4162 5414 1 chr5B.!!$R1 1252
13 TraesCS3A01G270800 chr5B 692376327 692377352 1025 True 1279.000000 1279 89.168000 4190 5219 1 chr5B.!!$R2 1029
14 TraesCS3A01G270800 chr1A 355341222 355342177 955 False 1232.000000 1232 90.021000 4150 5103 1 chr1A.!!$F1 953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.039256 GGTGTTGCGTGACATTGCAT 60.039 50.000 6.21 0.00 41.42 3.96 F
281 291 0.100503 ACGATGATCATGTGTCGCGA 59.899 50.000 14.30 3.71 37.59 5.87 F
284 294 0.175531 ATGATCATGTGTCGCGACCA 59.824 50.000 34.34 29.33 0.00 4.02 F
2136 5072 0.179111 CACCCGCGCTCTCATTCTTA 60.179 55.000 5.56 0.00 0.00 2.10 F
2140 5076 1.855360 CCGCGCTCTCATTCTTAGTTC 59.145 52.381 5.56 0.00 0.00 3.01 F
2183 5119 2.074729 TTCGGTGGGTGGTTTCAATT 57.925 45.000 0.00 0.00 0.00 2.32 F
3421 6432 3.813166 TCAAAGGGTTTCGTTCAGTCATC 59.187 43.478 0.00 0.00 0.00 2.92 F
4398 7415 0.320771 AGACCTAAAGCGCACACCAG 60.321 55.000 11.47 0.00 0.00 4.00 F
5583 8671 0.816018 GAGGAGGATCGCTCGTCAGA 60.816 60.000 20.03 0.00 37.90 3.27 F
6666 9756 0.608035 CGTACATGGGTTGGCCTTGT 60.608 55.000 3.32 0.00 35.98 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 4943 0.108186 GTCATGGTGTGCTCCATCGA 60.108 55.000 3.09 0.0 45.23 3.59 R
2027 4963 1.076024 AGCACCCCACTTTCATGTGAT 59.924 47.619 0.00 0.0 40.12 3.06 R
2183 5119 2.240160 ACACACCAACAGGTCAACCTTA 59.760 45.455 0.00 0.0 46.09 2.69 R
3188 6185 0.318120 CCGCTTTGCCATGAAAACCT 59.682 50.000 0.00 0.0 0.00 3.50 R
3421 6432 3.922171 AAAGATGCTCAAGTCCTAGGG 57.078 47.619 9.46 0.0 0.00 3.53 R
3522 6533 7.451731 AGATCAAGTGGGATATTCCAAGTAA 57.548 36.000 3.59 0.0 38.64 2.24 R
4538 7557 0.605589 TCCAGAGTCTTCGCGTCTGA 60.606 55.000 21.26 9.3 40.21 3.27 R
6071 9161 1.065709 CGCTTCAGGGGGCTAAGTAAA 60.066 52.381 0.00 0.0 0.00 2.01 R
7384 10639 0.611896 CCATGGGCTTCCGGAACTTT 60.612 55.000 14.35 0.0 0.00 2.66 R
8493 11784 0.179026 CCCTCGTCGGAGAGACCATA 60.179 60.000 9.16 0.0 46.92 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.278310 TCCTCATCTATTGTTCCTCGTCA 58.722 43.478 0.00 0.00 0.00 4.35
77 78 4.415150 CAGGCTCCCATGGCACGT 62.415 66.667 6.09 0.00 34.73 4.49
84 85 0.747644 TCCCATGGCACGTGCTATTG 60.748 55.000 36.84 30.56 40.38 1.90
95 96 2.884639 ACGTGCTATTGCTTCAAAAGGT 59.115 40.909 0.00 0.00 40.48 3.50
143 144 0.039256 GGTGTTGCGTGACATTGCAT 60.039 50.000 6.21 0.00 41.42 3.96
148 149 1.226101 GCGTGACATTGCATGACGG 60.226 57.895 0.00 0.00 32.94 4.79
153 154 1.361668 GACATTGCATGACGGCGACT 61.362 55.000 16.62 0.00 36.28 4.18
188 189 3.123620 GACTGCTGCAAGGCCTCG 61.124 66.667 5.23 0.00 0.00 4.63
189 190 3.890936 GACTGCTGCAAGGCCTCGT 62.891 63.158 5.23 0.00 0.00 4.18
231 240 3.316029 CACGGTGATGATAATGCCATGTT 59.684 43.478 0.74 0.00 0.00 2.71
254 264 3.058570 GTGTTGTGACAACAGTGTTGTGA 60.059 43.478 39.02 30.97 38.41 3.58
266 276 3.076621 AGTGTTGTGATGCAATGACGAT 58.923 40.909 0.00 0.00 39.55 3.73
277 287 3.310501 TGCAATGACGATGATCATGTGTC 59.689 43.478 22.24 22.24 39.32 3.67
278 288 3.603173 GCAATGACGATGATCATGTGTCG 60.603 47.826 22.90 18.88 39.32 4.35
279 289 1.559831 TGACGATGATCATGTGTCGC 58.440 50.000 22.90 14.23 37.59 5.19
280 290 0.500178 GACGATGATCATGTGTCGCG 59.500 55.000 14.30 11.60 37.59 5.87
281 291 0.100503 ACGATGATCATGTGTCGCGA 59.899 50.000 14.30 3.71 37.59 5.87
282 292 0.500178 CGATGATCATGTGTCGCGAC 59.500 55.000 31.66 31.66 0.00 5.19
283 293 0.855349 GATGATCATGTGTCGCGACC 59.145 55.000 34.34 25.11 0.00 4.79
284 294 0.175531 ATGATCATGTGTCGCGACCA 59.824 50.000 34.34 29.33 0.00 4.02
285 295 0.735978 TGATCATGTGTCGCGACCAC 60.736 55.000 34.34 28.95 0.00 4.16
286 296 0.458543 GATCATGTGTCGCGACCACT 60.459 55.000 34.34 16.81 0.00 4.00
287 297 0.737367 ATCATGTGTCGCGACCACTG 60.737 55.000 34.34 26.05 0.00 3.66
288 298 2.738521 ATGTGTCGCGACCACTGC 60.739 61.111 34.34 19.32 0.00 4.40
289 299 3.513768 ATGTGTCGCGACCACTGCA 62.514 57.895 34.34 23.61 0.00 4.41
290 300 2.964925 GTGTCGCGACCACTGCAA 60.965 61.111 34.34 12.98 0.00 4.08
291 301 2.964925 TGTCGCGACCACTGCAAC 60.965 61.111 34.34 9.35 0.00 4.17
292 302 2.964925 GTCGCGACCACTGCAACA 60.965 61.111 28.61 0.00 0.00 3.33
293 303 2.202946 TCGCGACCACTGCAACAA 60.203 55.556 3.71 0.00 0.00 2.83
294 304 1.596752 TCGCGACCACTGCAACAAT 60.597 52.632 3.71 0.00 0.00 2.71
295 305 1.440850 CGCGACCACTGCAACAATG 60.441 57.895 0.00 0.00 0.00 2.82
296 306 1.840630 CGCGACCACTGCAACAATGA 61.841 55.000 0.00 0.00 0.00 2.57
297 307 0.385974 GCGACCACTGCAACAATGAC 60.386 55.000 0.00 0.00 0.00 3.06
298 308 1.229428 CGACCACTGCAACAATGACT 58.771 50.000 0.00 0.00 0.00 3.41
299 309 2.412870 CGACCACTGCAACAATGACTA 58.587 47.619 0.00 0.00 0.00 2.59
300 310 2.413112 CGACCACTGCAACAATGACTAG 59.587 50.000 0.00 0.00 0.00 2.57
301 311 2.744202 GACCACTGCAACAATGACTAGG 59.256 50.000 0.00 0.00 0.00 3.02
311 321 2.002586 CAATGACTAGGGTGACAAGCG 58.997 52.381 0.00 0.00 0.00 4.68
349 359 0.597072 GAACGACTGAGAAGGGACGT 59.403 55.000 0.00 0.00 35.56 4.34
401 411 1.597199 GCGACGAGTGCAAGATCGATA 60.597 52.381 20.20 0.00 41.40 2.92
421 431 0.402566 ATGCAGGGGAAGAGGCCTAT 60.403 55.000 4.42 0.00 0.00 2.57
436 446 2.897792 GCCTATGCTCCACGTGAGTCT 61.898 57.143 19.30 6.86 43.48 3.24
454 464 6.015772 GTGAGTCTGAGTCTCTTTCTACCTTT 60.016 42.308 13.30 0.00 33.59 3.11
456 466 4.926832 GTCTGAGTCTCTTTCTACCTTTGC 59.073 45.833 0.65 0.00 0.00 3.68
464 474 4.817517 TCTTTCTACCTTTGCTCCTTACG 58.182 43.478 0.00 0.00 0.00 3.18
467 477 3.159472 TCTACCTTTGCTCCTTACGTGA 58.841 45.455 0.00 0.00 0.00 4.35
472 482 3.390135 CTTTGCTCCTTACGTGAGACAA 58.610 45.455 9.23 7.50 31.26 3.18
480 490 3.985279 CCTTACGTGAGACAAATCGAACA 59.015 43.478 9.23 0.00 0.00 3.18
486 496 4.026062 CGTGAGACAAATCGAACAACTGAA 60.026 41.667 0.00 0.00 0.00 3.02
525 535 1.290009 GACAACCATGTTGCAGGGC 59.710 57.895 6.86 0.00 39.09 5.19
526 536 1.457267 ACAACCATGTTGCAGGGCA 60.457 52.632 6.86 0.00 39.09 5.36
533 543 3.055719 GTTGCAGGGCAGCGCTAA 61.056 61.111 10.99 0.69 40.61 3.09
534 544 3.055719 TTGCAGGGCAGCGCTAAC 61.056 61.111 10.99 5.09 40.61 2.34
535 545 3.841137 TTGCAGGGCAGCGCTAACA 62.841 57.895 10.99 10.75 40.61 2.41
536 546 3.055719 GCAGGGCAGCGCTAACAA 61.056 61.111 10.99 0.00 0.00 2.83
569 596 2.345991 GCTGCCACGGTAACCTGA 59.654 61.111 0.00 0.00 0.00 3.86
580 607 4.274950 CACGGTAACCTGACAAAGTGAATT 59.725 41.667 0.00 0.00 0.00 2.17
584 611 6.293955 CGGTAACCTGACAAAGTGAATTCAAT 60.294 38.462 10.35 6.06 0.00 2.57
596 623 5.255687 AGTGAATTCAATGGCTCACACATA 58.744 37.500 10.35 0.00 40.53 2.29
606 633 2.212652 GCTCACACATAATGCATCGGA 58.787 47.619 0.00 0.00 0.00 4.55
618 645 1.136891 TGCATCGGACAGACATCGAAT 59.863 47.619 0.00 0.00 36.49 3.34
631 659 3.926616 ACATCGAATTGACCGACTTTCT 58.073 40.909 0.00 0.00 38.97 2.52
669 697 2.046314 ACATAGCACGCACCCACC 60.046 61.111 0.00 0.00 0.00 4.61
672 700 3.031417 ATAGCACGCACCCACCTCC 62.031 63.158 0.00 0.00 0.00 4.30
707 735 2.779755 ATGTTGATGACGTGGCCTTA 57.220 45.000 3.32 0.00 0.00 2.69
788 3452 9.503427 GTGATAATACGGAAAAGGAAAGAAATG 57.497 33.333 0.00 0.00 0.00 2.32
810 3474 2.203480 AAAGGCCACGCACCACAT 60.203 55.556 5.01 0.00 0.00 3.21
873 3537 5.071788 ACTTTTCCAGACAAGTACTCCATCA 59.928 40.000 0.00 0.00 31.20 3.07
881 3545 5.362430 AGACAAGTACTCCATCATCTTCTCC 59.638 44.000 0.00 0.00 0.00 3.71
928 3592 5.254339 ACAGTTGGAAGAAAGAAAAGCAG 57.746 39.130 0.00 0.00 0.00 4.24
991 3655 3.319198 AGTACAGTGGTGGGCGGG 61.319 66.667 0.00 0.00 0.00 6.13
1049 3713 2.835431 CTCGGAGGTGGCGGAGAT 60.835 66.667 0.00 0.00 37.40 2.75
1323 4016 0.828022 CTTGTGCCCTCATACCCGTA 59.172 55.000 0.00 0.00 0.00 4.02
1593 4287 6.254281 AGATGCTAATAACGTTGCTTGTTT 57.746 33.333 11.99 0.00 0.00 2.83
1627 4321 5.237344 GGAAATGGGATAGATTCACGTGAAG 59.763 44.000 32.19 0.50 37.48 3.02
1639 4333 1.860950 CACGTGAAGTCACTGTTGAGG 59.139 52.381 10.90 0.00 44.34 3.86
2007 4943 3.326109 GCGGTTTGCGTACTGTGT 58.674 55.556 0.00 0.00 0.00 3.72
2016 4952 1.140407 GCGTACTGTGTCGATGGAGC 61.140 60.000 10.39 0.00 0.00 4.70
2077 5013 2.671619 GTGCCGCAGCCTGGTTAA 60.672 61.111 0.00 0.00 38.69 2.01
2136 5072 0.179111 CACCCGCGCTCTCATTCTTA 60.179 55.000 5.56 0.00 0.00 2.10
2140 5076 1.855360 CCGCGCTCTCATTCTTAGTTC 59.145 52.381 5.56 0.00 0.00 3.01
2183 5119 2.074729 TTCGGTGGGTGGTTTCAATT 57.925 45.000 0.00 0.00 0.00 2.32
2335 5271 3.851098 CCTATTTCGAGTAGCATAGGGC 58.149 50.000 0.00 0.00 45.30 5.19
2606 5542 6.890268 AGCTAGTTTTCCGAGGGATTAATTTT 59.110 34.615 0.00 0.00 0.00 1.82
2609 5545 7.776618 AGTTTTCCGAGGGATTAATTTTTCT 57.223 32.000 0.00 0.00 0.00 2.52
2631 5567 4.537135 TTACTTGGGACTTAGTGCAGAG 57.463 45.455 6.17 5.32 0.00 3.35
2941 5938 4.411927 TGGTCTAAGAGACTGAAGCTTCT 58.588 43.478 26.09 8.01 44.46 2.85
2942 5939 4.835615 TGGTCTAAGAGACTGAAGCTTCTT 59.164 41.667 26.09 13.83 44.46 2.52
3188 6185 7.701539 AACCAACTCAAATGCATCTATGTTA 57.298 32.000 0.00 0.00 0.00 2.41
3277 6274 5.419542 GAGACATGTGTGAACTGGCTAATA 58.580 41.667 1.15 0.00 0.00 0.98
3421 6432 3.813166 TCAAAGGGTTTCGTTCAGTCATC 59.187 43.478 0.00 0.00 0.00 2.92
3522 6533 9.257651 GTTTTACGAGATTAGTGGCAGTAATAT 57.742 33.333 23.81 21.53 0.00 1.28
3734 6745 3.904965 TGGTTCTACCAGTTACCATGTGA 59.095 43.478 0.00 0.00 44.79 3.58
4130 7142 4.404715 ACTTAGGTCCTCAGCGCTATAAAA 59.595 41.667 10.99 0.00 0.00 1.52
4131 7143 3.180891 AGGTCCTCAGCGCTATAAAAC 57.819 47.619 10.99 5.02 0.00 2.43
4132 7144 2.158943 AGGTCCTCAGCGCTATAAAACC 60.159 50.000 10.99 14.49 0.00 3.27
4133 7145 2.210961 GTCCTCAGCGCTATAAAACCC 58.789 52.381 10.99 0.00 0.00 4.11
4134 7146 1.834896 TCCTCAGCGCTATAAAACCCA 59.165 47.619 10.99 0.00 0.00 4.51
4135 7147 2.438021 TCCTCAGCGCTATAAAACCCAT 59.562 45.455 10.99 0.00 0.00 4.00
4136 7148 3.118038 TCCTCAGCGCTATAAAACCCATT 60.118 43.478 10.99 0.00 0.00 3.16
4137 7149 4.101898 TCCTCAGCGCTATAAAACCCATTA 59.898 41.667 10.99 0.00 0.00 1.90
4138 7150 4.452455 CCTCAGCGCTATAAAACCCATTAG 59.548 45.833 10.99 0.00 0.00 1.73
4139 7151 5.284861 TCAGCGCTATAAAACCCATTAGA 57.715 39.130 10.99 0.00 0.00 2.10
4140 7152 5.297547 TCAGCGCTATAAAACCCATTAGAG 58.702 41.667 10.99 0.00 0.00 2.43
4141 7153 5.069914 TCAGCGCTATAAAACCCATTAGAGA 59.930 40.000 10.99 0.00 0.00 3.10
4142 7154 5.758296 CAGCGCTATAAAACCCATTAGAGAA 59.242 40.000 10.99 0.00 0.00 2.87
4143 7155 6.428159 CAGCGCTATAAAACCCATTAGAGAAT 59.572 38.462 10.99 0.00 0.00 2.40
4144 7156 6.428159 AGCGCTATAAAACCCATTAGAGAATG 59.572 38.462 8.99 0.00 41.94 2.67
4145 7157 6.204882 GCGCTATAAAACCCATTAGAGAATGT 59.795 38.462 0.00 0.00 40.87 2.71
4146 7158 7.255139 GCGCTATAAAACCCATTAGAGAATGTT 60.255 37.037 0.00 0.00 40.87 2.71
4207 7224 0.464916 TCAATCGATGCATGCAGCCT 60.465 50.000 28.76 14.62 44.83 4.58
4244 7261 3.127895 TCCACAAAGGTCTGACAAAAACG 59.872 43.478 10.38 0.00 39.02 3.60
4245 7262 2.851824 CACAAAGGTCTGACAAAAACGC 59.148 45.455 10.38 0.00 0.00 4.84
4334 7351 4.938832 CCATATCTAAAACCGGTGTTGTCA 59.061 41.667 20.80 3.81 34.13 3.58
4398 7415 0.320771 AGACCTAAAGCGCACACCAG 60.321 55.000 11.47 0.00 0.00 4.00
4439 7456 1.344438 GCCATCATCATCGGACCACTA 59.656 52.381 0.00 0.00 0.00 2.74
4465 7484 2.079170 TCAGGAGAGAGATCCGCATT 57.921 50.000 0.00 0.00 44.65 3.56
4743 7764 1.153509 GCACCGTAGTACCGCCATT 60.154 57.895 0.00 0.00 0.00 3.16
4814 7835 1.071471 CCAGCAACCGTCAAGGACT 59.929 57.895 0.00 0.00 45.00 3.85
4913 7943 1.421646 CACCAGAGAGGGTTTTCACCT 59.578 52.381 0.00 0.00 43.65 4.00
4953 7986 3.849563 AGTAGAGGAGCAGACGTAGAT 57.150 47.619 0.00 0.00 0.00 1.98
4994 8027 3.414700 GCACCCTTGAGCGTCGTG 61.415 66.667 0.00 0.00 0.00 4.35
4995 8028 3.414700 CACCCTTGAGCGTCGTGC 61.415 66.667 0.00 0.00 46.98 5.34
5063 8096 1.461268 TCCTCCACCAGCTTCACCA 60.461 57.895 0.00 0.00 0.00 4.17
5314 8357 1.526887 GCCGTCCCAGATCCAATCA 59.473 57.895 0.00 0.00 0.00 2.57
5450 8534 3.597728 GAGCGCTAGACTCCGGGG 61.598 72.222 11.50 0.00 0.00 5.73
5556 8644 2.757917 GGCAGAGCTCTCTCCCGT 60.758 66.667 14.96 0.00 40.22 5.28
5577 8665 2.920384 GGGGGAGGAGGATCGCTC 60.920 72.222 3.35 3.35 34.37 5.03
5578 8666 3.299190 GGGGAGGAGGATCGCTCG 61.299 72.222 5.47 0.00 34.52 5.03
5579 8667 2.519780 GGGAGGAGGATCGCTCGT 60.520 66.667 6.23 6.23 34.52 4.18
5580 8668 2.557372 GGGAGGAGGATCGCTCGTC 61.557 68.421 18.16 18.16 34.52 4.20
5581 8669 1.824329 GGAGGAGGATCGCTCGTCA 60.824 63.158 23.42 0.00 37.90 4.35
5582 8670 1.652012 GAGGAGGATCGCTCGTCAG 59.348 63.158 20.03 0.00 37.90 3.51
5583 8671 0.816018 GAGGAGGATCGCTCGTCAGA 60.816 60.000 20.03 0.00 37.90 3.27
5594 8682 1.919918 CTCGTCAGAGCAGTCAATCC 58.080 55.000 0.00 0.00 37.73 3.01
5605 8693 5.104193 AGAGCAGTCAATCCAACCATTAGAT 60.104 40.000 0.00 0.00 0.00 1.98
5656 8744 5.243283 TGGAGTTAGTACCACTTCTTCACTC 59.757 44.000 3.35 0.00 0.00 3.51
5665 8753 6.031751 ACCACTTCTTCACTCTGTATCTTC 57.968 41.667 0.00 0.00 0.00 2.87
5726 8814 7.120579 AGGTCAAAGATGCATCGTTTACAATAA 59.879 33.333 28.66 9.36 28.43 1.40
5817 8905 4.503643 CCCACTGCATCCTTGAAATTTTGT 60.504 41.667 0.00 0.00 0.00 2.83
5843 8931 5.237815 TGGTCTGCTGAAGTATTTACACTG 58.762 41.667 0.00 0.00 0.00 3.66
5928 9017 4.530710 ATGATTGCTTCACATTTGCTGT 57.469 36.364 0.00 0.00 37.11 4.40
5931 9020 4.746115 TGATTGCTTCACATTTGCTGTTTC 59.254 37.500 0.00 0.00 35.29 2.78
5944 9033 7.232534 ACATTTGCTGTTTCTTATGGTCCTTTA 59.767 33.333 0.00 0.00 32.90 1.85
6046 9136 8.827177 TTTACTGATCTCAAGTATCGTGTTTT 57.173 30.769 0.00 0.00 0.00 2.43
6070 9160 7.540474 TTCTATAAACCTCTCAAGTCTGTGT 57.460 36.000 0.00 0.00 0.00 3.72
6071 9161 7.540474 TCTATAAACCTCTCAAGTCTGTGTT 57.460 36.000 0.00 0.00 0.00 3.32
6146 9236 4.578871 TGTCACTGATTTGAGGGTATGTG 58.421 43.478 0.00 0.00 0.00 3.21
6563 9653 2.360350 CAACCTGGCCTCGTGCAT 60.360 61.111 3.32 0.00 43.89 3.96
6619 9709 2.611800 ACTCCCAGCCATGCCTCA 60.612 61.111 0.00 0.00 0.00 3.86
6655 9745 3.129462 AGTCATCAGAGACACGTACATGG 59.871 47.826 0.00 0.00 40.98 3.66
6666 9756 0.608035 CGTACATGGGTTGGCCTTGT 60.608 55.000 3.32 0.00 35.98 3.16
6719 9963 2.427095 GGTTACTGGCATTAGGCTTTGG 59.573 50.000 0.00 0.00 44.01 3.28
6749 9993 5.358442 CACGGGTGAATGGGTGATAATTAAA 59.642 40.000 0.00 0.00 32.23 1.52
6881 10134 3.296854 AGTATCTTCAGTATGGTCCGCA 58.703 45.455 0.00 0.00 36.16 5.69
7373 10628 2.417719 CTCAAGAGACCTGGGAAAACG 58.582 52.381 0.00 0.00 0.00 3.60
7384 10639 0.536460 GGGAAAACGCCCTCAAGACA 60.536 55.000 0.00 0.00 45.12 3.41
7474 10729 1.251251 GCTGGTGCTTGAACTTCCAT 58.749 50.000 0.00 0.00 36.03 3.41
7541 10796 1.379044 GCTGACCCCAATGACCCTG 60.379 63.158 0.00 0.00 0.00 4.45
7555 10810 3.095163 CCTGCTGGCTCCAGGGAT 61.095 66.667 16.89 0.00 44.87 3.85
7591 10846 2.423538 GCTGCAATTTGGTAAGGTCGAT 59.576 45.455 0.00 0.00 0.00 3.59
7786 11049 2.412770 TCGGTAATTCGGCGTTTTCTTC 59.587 45.455 6.85 0.00 0.00 2.87
7864 11130 8.670135 TGTATACAAGAAAAATGTATGGTTCGG 58.330 33.333 2.20 0.00 42.40 4.30
7914 11180 5.699097 TTGTGCTGTATAAAGTTTCACCC 57.301 39.130 0.00 0.00 0.00 4.61
7971 11237 5.297547 AGTACATAGTGTTGTGGTGAAGTG 58.702 41.667 0.00 0.00 0.00 3.16
7973 11239 2.631160 TAGTGTTGTGGTGAAGTGGG 57.369 50.000 0.00 0.00 0.00 4.61
8123 11390 5.940470 AGTTTAATCCTGTCTCCATCAACAC 59.060 40.000 0.00 0.00 0.00 3.32
8124 11391 3.356529 AATCCTGTCTCCATCAACACC 57.643 47.619 0.00 0.00 0.00 4.16
8125 11392 1.728323 TCCTGTCTCCATCAACACCA 58.272 50.000 0.00 0.00 0.00 4.17
8126 11393 2.054021 TCCTGTCTCCATCAACACCAA 58.946 47.619 0.00 0.00 0.00 3.67
8127 11394 2.154462 CCTGTCTCCATCAACACCAAC 58.846 52.381 0.00 0.00 0.00 3.77
8129 11396 3.480470 CTGTCTCCATCAACACCAACTT 58.520 45.455 0.00 0.00 0.00 2.66
8130 11397 3.885297 CTGTCTCCATCAACACCAACTTT 59.115 43.478 0.00 0.00 0.00 2.66
8131 11398 3.631686 TGTCTCCATCAACACCAACTTTG 59.368 43.478 0.00 0.00 0.00 2.77
8132 11399 2.622942 TCTCCATCAACACCAACTTTGC 59.377 45.455 0.00 0.00 0.00 3.68
8133 11400 2.624838 CTCCATCAACACCAACTTTGCT 59.375 45.455 0.00 0.00 0.00 3.91
8134 11401 2.361757 TCCATCAACACCAACTTTGCTG 59.638 45.455 0.00 0.00 0.00 4.41
8229 11503 1.135257 AGACGAAAGCGACAGGATGAG 60.135 52.381 0.00 0.00 38.92 2.90
8231 11505 1.424493 CGAAAGCGACAGGATGAGCC 61.424 60.000 0.00 0.00 42.24 4.70
8283 11571 0.804989 GTCAAACCAAGCAGGGATCG 59.195 55.000 0.10 0.00 43.89 3.69
8288 11576 1.201429 ACCAAGCAGGGATCGAAGGT 61.201 55.000 0.10 0.00 43.89 3.50
8289 11577 0.462759 CCAAGCAGGGATCGAAGGTC 60.463 60.000 0.00 0.00 0.00 3.85
8290 11578 0.462759 CAAGCAGGGATCGAAGGTCC 60.463 60.000 0.00 0.00 34.92 4.46
8291 11579 1.961180 AAGCAGGGATCGAAGGTCCG 61.961 60.000 0.00 0.00 36.58 4.79
8292 11580 2.722201 GCAGGGATCGAAGGTCCGT 61.722 63.158 0.00 0.00 36.58 4.69
8293 11581 1.437986 CAGGGATCGAAGGTCCGTC 59.562 63.158 0.00 0.00 36.58 4.79
8294 11582 1.038130 CAGGGATCGAAGGTCCGTCT 61.038 60.000 3.19 0.00 36.58 4.18
8295 11583 0.752376 AGGGATCGAAGGTCCGTCTC 60.752 60.000 3.19 0.00 36.58 3.36
8296 11584 1.035932 GGGATCGAAGGTCCGTCTCA 61.036 60.000 3.19 0.00 36.58 3.27
8297 11585 0.100861 GGATCGAAGGTCCGTCTCAC 59.899 60.000 3.19 0.00 0.00 3.51
8298 11586 1.096416 GATCGAAGGTCCGTCTCACT 58.904 55.000 3.19 0.00 0.00 3.41
8299 11587 1.064357 GATCGAAGGTCCGTCTCACTC 59.936 57.143 3.19 0.00 0.00 3.51
8300 11588 0.959372 TCGAAGGTCCGTCTCACTCC 60.959 60.000 3.19 0.00 0.00 3.85
8301 11589 1.891616 GAAGGTCCGTCTCACTCCC 59.108 63.158 0.00 0.00 0.00 4.30
8344 11632 5.186215 TCAGGAATACAACCGTGATTCACTA 59.814 40.000 14.54 0.72 32.30 2.74
8345 11633 6.049149 CAGGAATACAACCGTGATTCACTAT 58.951 40.000 14.54 2.98 32.30 2.12
8346 11634 7.068962 TCAGGAATACAACCGTGATTCACTATA 59.931 37.037 14.54 1.15 32.30 1.31
8347 11635 7.382488 CAGGAATACAACCGTGATTCACTATAG 59.618 40.741 14.54 0.00 32.30 1.31
8348 11636 6.145696 GGAATACAACCGTGATTCACTATAGC 59.854 42.308 14.54 2.61 32.30 2.97
8349 11637 3.793559 ACAACCGTGATTCACTATAGCC 58.206 45.455 14.54 0.00 31.34 3.93
8357 11645 5.859114 CGTGATTCACTATAGCCATAGTCAC 59.141 44.000 14.54 6.77 44.55 3.67
8358 11646 6.515035 CGTGATTCACTATAGCCATAGTCACA 60.515 42.308 14.54 7.45 44.55 3.58
8360 11648 4.855715 TCACTATAGCCATAGTCACAGC 57.144 45.455 1.43 0.00 44.55 4.40
8370 11658 4.012374 CCATAGTCACAGCCATGTTCTTT 58.988 43.478 0.00 0.00 37.65 2.52
8377 11665 2.821969 ACAGCCATGTTCTTTCATCACC 59.178 45.455 0.00 0.00 35.63 4.02
8387 11675 6.563422 TGTTCTTTCATCACCACAAGAAAAG 58.437 36.000 0.00 0.00 37.08 2.27
8389 11677 5.445069 TCTTTCATCACCACAAGAAAAGGA 58.555 37.500 0.00 0.00 30.49 3.36
8390 11678 5.890985 TCTTTCATCACCACAAGAAAAGGAA 59.109 36.000 0.00 0.00 30.49 3.36
8391 11679 5.772825 TTCATCACCACAAGAAAAGGAAG 57.227 39.130 0.00 0.00 0.00 3.46
8392 11680 4.144297 TCATCACCACAAGAAAAGGAAGG 58.856 43.478 0.00 0.00 0.00 3.46
8393 11681 2.306847 TCACCACAAGAAAAGGAAGGC 58.693 47.619 0.00 0.00 0.00 4.35
8394 11682 1.341209 CACCACAAGAAAAGGAAGGCC 59.659 52.381 0.00 0.00 0.00 5.19
8396 11684 2.445525 ACCACAAGAAAAGGAAGGCCTA 59.554 45.455 5.16 0.00 46.28 3.93
8397 11685 3.117284 ACCACAAGAAAAGGAAGGCCTAA 60.117 43.478 5.16 0.00 46.28 2.69
8399 11687 3.888930 CACAAGAAAAGGAAGGCCTAACA 59.111 43.478 5.16 0.00 46.28 2.41
8400 11688 4.340950 CACAAGAAAAGGAAGGCCTAACAA 59.659 41.667 5.16 0.00 46.28 2.83
8401 11689 4.584743 ACAAGAAAAGGAAGGCCTAACAAG 59.415 41.667 5.16 0.00 46.28 3.16
8402 11690 3.157881 AGAAAAGGAAGGCCTAACAAGC 58.842 45.455 5.16 0.00 46.28 4.01
8428 11719 1.129326 GATACTATCACCGTGCGTGC 58.871 55.000 0.00 0.00 42.69 5.34
8429 11720 0.594028 ATACTATCACCGTGCGTGCG 60.594 55.000 0.00 0.00 42.69 5.34
8430 11721 1.925415 TACTATCACCGTGCGTGCGT 61.925 55.000 0.00 0.00 42.69 5.24
8431 11722 2.788176 CTATCACCGTGCGTGCGTG 61.788 63.158 0.00 0.00 42.69 5.34
8432 11723 3.561217 TATCACCGTGCGTGCGTGT 62.561 57.895 0.00 0.00 42.69 4.49
8445 11736 1.291184 TGCGTGTTCTTCCATCAGCG 61.291 55.000 0.00 0.00 0.00 5.18
8469 11760 3.431673 AGCTGAGAAGGGAAAAGAAGG 57.568 47.619 0.00 0.00 0.00 3.46
8488 11779 4.561500 AGGAAAGGAAGGCTTCTACTTC 57.438 45.455 25.25 21.67 42.73 3.01
8489 11780 4.172020 AGGAAAGGAAGGCTTCTACTTCT 58.828 43.478 25.25 11.64 42.96 2.85
8491 11782 5.423931 AGGAAAGGAAGGCTTCTACTTCTAG 59.576 44.000 25.25 0.00 42.96 2.43
8493 11784 3.989056 AGGAAGGCTTCTACTTCTAGCT 58.011 45.455 25.25 8.86 42.96 3.32
8496 11787 5.538433 AGGAAGGCTTCTACTTCTAGCTATG 59.462 44.000 25.25 0.00 42.96 2.23
8508 11799 1.801771 CTAGCTATGGTCTCTCCGACG 59.198 57.143 0.00 0.00 43.79 5.12
8545 11836 3.109612 CTCCTAGTCGTCGGCGGTG 62.110 68.421 10.62 0.00 38.89 4.94
8652 11943 2.427320 GGCCGCCTCATCTGCATA 59.573 61.111 0.71 0.00 0.00 3.14
8657 11948 1.748403 GCCTCATCTGCATACCGGA 59.252 57.895 9.46 0.00 0.00 5.14
8661 11952 3.070018 CCTCATCTGCATACCGGATTTC 58.930 50.000 9.46 0.00 37.45 2.17
8665 11956 3.804786 TCTGCATACCGGATTTCGTAA 57.195 42.857 9.46 0.00 37.11 3.18
8666 11957 4.330944 TCTGCATACCGGATTTCGTAAT 57.669 40.909 9.46 0.00 37.11 1.89
8667 11958 4.699637 TCTGCATACCGGATTTCGTAATT 58.300 39.130 9.46 0.00 37.11 1.40
8668 11959 5.120399 TCTGCATACCGGATTTCGTAATTT 58.880 37.500 9.46 0.00 37.11 1.82
8669 11960 5.235616 TCTGCATACCGGATTTCGTAATTTC 59.764 40.000 9.46 0.00 37.11 2.17
8670 11961 4.025563 TGCATACCGGATTTCGTAATTTCG 60.026 41.667 9.46 0.00 37.11 3.46
8671 11962 4.025480 GCATACCGGATTTCGTAATTTCGT 60.025 41.667 9.46 0.00 37.11 3.85
8672 11963 5.175491 GCATACCGGATTTCGTAATTTCGTA 59.825 40.000 9.46 0.00 37.11 3.43
8673 11964 6.128742 GCATACCGGATTTCGTAATTTCGTAT 60.129 38.462 9.46 0.29 37.11 3.06
8674 11965 7.062138 GCATACCGGATTTCGTAATTTCGTATA 59.938 37.037 9.46 0.00 37.11 1.47
8675 11966 6.753897 ACCGGATTTCGTAATTTCGTATAC 57.246 37.500 9.46 0.00 37.11 1.47
8676 11967 6.272318 ACCGGATTTCGTAATTTCGTATACA 58.728 36.000 9.46 0.00 37.11 2.29
8677 11968 6.418819 ACCGGATTTCGTAATTTCGTATACAG 59.581 38.462 9.46 0.00 37.11 2.74
8678 11969 6.418819 CCGGATTTCGTAATTTCGTATACAGT 59.581 38.462 0.00 0.00 37.11 3.55
8679 11970 7.357859 CCGGATTTCGTAATTTCGTATACAGTC 60.358 40.741 0.00 0.00 37.11 3.51
8680 11971 7.166307 CGGATTTCGTAATTTCGTATACAGTCA 59.834 37.037 3.32 0.00 0.00 3.41
8681 11972 8.810427 GGATTTCGTAATTTCGTATACAGTCAA 58.190 33.333 3.32 0.00 0.00 3.18
8682 11973 9.615779 GATTTCGTAATTTCGTATACAGTCAAC 57.384 33.333 3.32 0.00 0.00 3.18
8683 11974 6.779385 TCGTAATTTCGTATACAGTCAACG 57.221 37.500 3.32 5.65 37.96 4.10
8684 11975 6.541969 TCGTAATTTCGTATACAGTCAACGA 58.458 36.000 3.32 7.76 43.31 3.85
8685 11976 7.188834 TCGTAATTTCGTATACAGTCAACGAT 58.811 34.615 10.24 0.92 44.27 3.73
8686 11977 7.697710 TCGTAATTTCGTATACAGTCAACGATT 59.302 33.333 10.24 6.46 44.27 3.34
8687 11978 8.316046 CGTAATTTCGTATACAGTCAACGATTT 58.684 33.333 10.24 9.75 44.27 2.17
8688 11979 9.615779 GTAATTTCGTATACAGTCAACGATTTC 57.384 33.333 10.24 0.31 44.27 2.17
8689 11980 5.920085 TTCGTATACAGTCAACGATTTCG 57.080 39.130 10.24 0.00 44.27 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.415150 CACGTGCCATGGGAGCCT 62.415 66.667 15.13 0.00 0.00 4.58
77 78 3.057315 GCTGACCTTTTGAAGCAATAGCA 60.057 43.478 0.00 0.00 45.49 3.49
84 85 3.755697 GTCGCTGACCTTTTGAAGC 57.244 52.632 0.00 0.00 0.00 3.86
95 96 2.486636 CTAGCAACGGTGGTCGCTGA 62.487 60.000 9.22 0.00 43.89 4.26
107 108 2.202756 CGCCCTCCGTCTAGCAAC 60.203 66.667 0.00 0.00 0.00 4.17
143 144 1.657751 CCTCTCATCAGTCGCCGTCA 61.658 60.000 0.00 0.00 0.00 4.35
148 149 2.279120 CGCCCTCTCATCAGTCGC 60.279 66.667 0.00 0.00 0.00 5.19
153 154 0.751643 TCGATGACGCCCTCTCATCA 60.752 55.000 11.96 0.00 42.92 3.07
189 190 0.098200 CATCGTCGCCTCTACAACGA 59.902 55.000 0.00 0.00 46.73 3.85
213 222 5.252969 ACACAACATGGCATTATCATCAC 57.747 39.130 0.00 0.00 0.00 3.06
221 230 2.429971 TGTCACAACACAACATGGCATT 59.570 40.909 0.00 0.00 0.00 3.56
231 240 2.881513 ACAACACTGTTGTCACAACACA 59.118 40.909 19.75 0.09 33.55 3.72
245 254 2.493035 TCGTCATTGCATCACAACACT 58.507 42.857 0.00 0.00 42.27 3.55
254 264 3.881089 ACACATGATCATCGTCATTGCAT 59.119 39.130 4.86 0.00 36.72 3.96
266 276 0.735978 GTGGTCGCGACACATGATCA 60.736 55.000 37.26 22.45 38.67 2.92
277 287 1.440850 CATTGTTGCAGTGGTCGCG 60.441 57.895 0.00 0.00 0.00 5.87
278 288 0.385974 GTCATTGTTGCAGTGGTCGC 60.386 55.000 0.00 0.00 0.00 5.19
279 289 1.229428 AGTCATTGTTGCAGTGGTCG 58.771 50.000 0.00 0.00 0.00 4.79
280 290 2.744202 CCTAGTCATTGTTGCAGTGGTC 59.256 50.000 0.00 0.00 0.00 4.02
281 291 2.553028 CCCTAGTCATTGTTGCAGTGGT 60.553 50.000 0.00 0.00 0.00 4.16
282 292 2.086869 CCCTAGTCATTGTTGCAGTGG 58.913 52.381 0.00 0.00 0.00 4.00
283 293 2.485426 CACCCTAGTCATTGTTGCAGTG 59.515 50.000 0.00 0.00 0.00 3.66
284 294 2.371841 TCACCCTAGTCATTGTTGCAGT 59.628 45.455 0.00 0.00 0.00 4.40
285 295 2.744202 GTCACCCTAGTCATTGTTGCAG 59.256 50.000 0.00 0.00 0.00 4.41
286 296 2.105649 TGTCACCCTAGTCATTGTTGCA 59.894 45.455 0.00 0.00 0.00 4.08
287 297 2.778299 TGTCACCCTAGTCATTGTTGC 58.222 47.619 0.00 0.00 0.00 4.17
288 298 3.189287 GCTTGTCACCCTAGTCATTGTTG 59.811 47.826 0.00 0.00 0.00 3.33
289 299 3.412386 GCTTGTCACCCTAGTCATTGTT 58.588 45.455 0.00 0.00 0.00 2.83
290 300 2.612972 CGCTTGTCACCCTAGTCATTGT 60.613 50.000 0.00 0.00 0.00 2.71
291 301 2.002586 CGCTTGTCACCCTAGTCATTG 58.997 52.381 0.00 0.00 0.00 2.82
292 302 1.676014 GCGCTTGTCACCCTAGTCATT 60.676 52.381 0.00 0.00 0.00 2.57
293 303 0.108138 GCGCTTGTCACCCTAGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
294 304 1.292223 GCGCTTGTCACCCTAGTCA 59.708 57.895 0.00 0.00 0.00 3.41
295 305 0.320421 TTGCGCTTGTCACCCTAGTC 60.320 55.000 9.73 0.00 0.00 2.59
296 306 0.602905 GTTGCGCTTGTCACCCTAGT 60.603 55.000 9.73 0.00 0.00 2.57
297 307 0.602638 TGTTGCGCTTGTCACCCTAG 60.603 55.000 9.73 0.00 0.00 3.02
298 308 0.036164 ATGTTGCGCTTGTCACCCTA 59.964 50.000 9.73 0.00 0.00 3.53
299 309 1.228245 ATGTTGCGCTTGTCACCCT 60.228 52.632 9.73 0.00 0.00 4.34
300 310 1.210155 GATGTTGCGCTTGTCACCC 59.790 57.895 9.73 0.00 0.00 4.61
301 311 1.154413 CGATGTTGCGCTTGTCACC 60.154 57.895 9.73 0.00 0.00 4.02
401 411 0.624500 TAGGCCTCTTCCCCTGCATT 60.625 55.000 9.68 0.00 32.65 3.56
436 446 4.021016 GGAGCAAAGGTAGAAAGAGACTCA 60.021 45.833 5.02 0.00 0.00 3.41
444 454 4.039488 TCACGTAAGGAGCAAAGGTAGAAA 59.961 41.667 0.00 0.00 46.39 2.52
445 455 3.575256 TCACGTAAGGAGCAAAGGTAGAA 59.425 43.478 0.00 0.00 46.39 2.10
454 464 3.585862 GATTTGTCTCACGTAAGGAGCA 58.414 45.455 0.00 0.00 46.39 4.26
456 466 4.092771 TCGATTTGTCTCACGTAAGGAG 57.907 45.455 0.00 0.00 46.39 3.69
464 474 5.403897 TTCAGTTGTTCGATTTGTCTCAC 57.596 39.130 0.00 0.00 0.00 3.51
467 477 5.221048 CCCTTTTCAGTTGTTCGATTTGTCT 60.221 40.000 0.00 0.00 0.00 3.41
472 482 3.250040 CGTCCCTTTTCAGTTGTTCGATT 59.750 43.478 0.00 0.00 0.00 3.34
480 490 0.179067 TCGCACGTCCCTTTTCAGTT 60.179 50.000 0.00 0.00 0.00 3.16
486 496 4.278956 GTGATCGCACGTCCCTTT 57.721 55.556 0.16 0.00 34.94 3.11
525 535 2.096496 CCCTTCTCAATTGTTAGCGCTG 59.904 50.000 22.90 1.35 0.00 5.18
526 536 2.027192 TCCCTTCTCAATTGTTAGCGCT 60.027 45.455 17.26 17.26 0.00 5.92
531 541 2.026636 CCCCGTCCCTTCTCAATTGTTA 60.027 50.000 5.13 0.00 0.00 2.41
533 543 0.328258 CCCCGTCCCTTCTCAATTGT 59.672 55.000 5.13 0.00 0.00 2.71
534 544 1.032114 GCCCCGTCCCTTCTCAATTG 61.032 60.000 0.00 0.00 0.00 2.32
535 545 1.208165 AGCCCCGTCCCTTCTCAATT 61.208 55.000 0.00 0.00 0.00 2.32
536 546 1.616628 AGCCCCGTCCCTTCTCAAT 60.617 57.895 0.00 0.00 0.00 2.57
561 588 6.863126 CCATTGAATTCACTTTGTCAGGTTAC 59.137 38.462 7.89 0.00 0.00 2.50
569 596 4.341806 TGTGAGCCATTGAATTCACTTTGT 59.658 37.500 7.89 0.00 40.36 2.83
580 607 3.354467 TGCATTATGTGTGAGCCATTGA 58.646 40.909 0.00 0.00 0.00 2.57
584 611 1.941975 CGATGCATTATGTGTGAGCCA 59.058 47.619 0.00 0.00 0.00 4.75
596 623 1.136891 TCGATGTCTGTCCGATGCATT 59.863 47.619 0.00 0.00 0.00 3.56
606 633 2.231478 AGTCGGTCAATTCGATGTCTGT 59.769 45.455 0.00 0.00 38.93 3.41
618 645 3.830744 TTTCCTGAGAAAGTCGGTCAA 57.169 42.857 0.00 0.00 37.07 3.18
631 659 1.218047 CGACCGGCTGATTTCCTGA 59.782 57.895 0.00 0.00 0.00 3.86
669 697 1.934589 TATGCGACCAACATTCGGAG 58.065 50.000 0.00 0.00 40.33 4.63
672 700 3.063316 TCAACATATGCGACCAACATTCG 59.937 43.478 1.58 0.00 39.56 3.34
788 3452 1.285950 GGTGCGTGGCCTTTCTTTC 59.714 57.895 3.32 0.00 0.00 2.62
810 3474 3.006859 CAGGTACAGTGACCACTCATCAA 59.993 47.826 12.45 0.00 42.47 2.57
825 3489 3.942377 TAGCGGGCGGACAGGTACA 62.942 63.158 0.00 0.00 0.00 2.90
873 3537 0.988145 TTGGGCGATGGGGAGAAGAT 60.988 55.000 0.00 0.00 0.00 2.40
928 3592 3.310501 TCTTTCGTCGGTCTTGGTTTTTC 59.689 43.478 0.00 0.00 0.00 2.29
991 3655 1.374758 CCCGAGGCATATCTTCCGC 60.375 63.158 0.00 0.00 0.00 5.54
992 3656 0.244994 CTCCCGAGGCATATCTTCCG 59.755 60.000 0.00 0.00 0.00 4.30
993 3657 0.610687 CCTCCCGAGGCATATCTTCC 59.389 60.000 0.00 0.00 42.44 3.46
1049 3713 1.866997 TCCTCCTTCTCCTCCCCCA 60.867 63.158 0.00 0.00 0.00 4.96
1323 4016 1.008938 AGCAGAGACCCCTACCAATCT 59.991 52.381 0.00 0.00 0.00 2.40
1582 4276 1.268113 AATCGCGCAAACAAGCAACG 61.268 50.000 8.75 0.00 35.72 4.10
1593 4287 0.962855 TCCCATTTCCAAATCGCGCA 60.963 50.000 8.75 0.00 0.00 6.09
1627 4321 0.685097 TGCCCTACCTCAACAGTGAC 59.315 55.000 0.00 0.00 0.00 3.67
1639 4333 0.963962 TCCGTAATCCGATGCCCTAC 59.036 55.000 0.00 0.00 39.56 3.18
2007 4943 0.108186 GTCATGGTGTGCTCCATCGA 60.108 55.000 3.09 0.00 45.23 3.59
2016 4952 4.216902 ACTTTCATGTGATGTCATGGTGTG 59.783 41.667 6.80 0.00 43.52 3.82
2027 4963 1.076024 AGCACCCCACTTTCATGTGAT 59.924 47.619 0.00 0.00 40.12 3.06
2071 5007 3.201045 TGGTATGGCATACAGCTTAACCA 59.799 43.478 32.19 21.47 44.79 3.67
2075 5011 5.366482 TCTTTGGTATGGCATACAGCTTA 57.634 39.130 32.19 15.83 44.79 3.09
2076 5012 4.235079 TCTTTGGTATGGCATACAGCTT 57.765 40.909 32.19 0.00 44.79 3.74
2077 5013 3.931907 TCTTTGGTATGGCATACAGCT 57.068 42.857 32.19 0.34 44.79 4.24
2136 5072 6.187682 CACCAAATTTAGTATCCCCAGAACT 58.812 40.000 0.00 0.00 0.00 3.01
2140 5076 8.533569 AAATACACCAAATTTAGTATCCCCAG 57.466 34.615 9.30 0.00 0.00 4.45
2183 5119 2.240160 ACACACCAACAGGTCAACCTTA 59.760 45.455 0.00 0.00 46.09 2.69
2335 5271 1.459455 TTGGCCACCATCCAAACACG 61.459 55.000 3.88 0.00 40.35 4.49
2393 5329 2.332063 AGCCATCCAAACATAGACCG 57.668 50.000 0.00 0.00 0.00 4.79
2550 5486 6.016024 AGACACGTATGAAAACTACAGGTACA 60.016 38.462 0.00 0.00 0.00 2.90
2606 5542 5.071250 TCTGCACTAAGTCCCAAGTAAAGAA 59.929 40.000 0.00 0.00 0.00 2.52
2609 5545 4.347000 ACTCTGCACTAAGTCCCAAGTAAA 59.653 41.667 0.00 0.00 0.00 2.01
3112 6109 7.803279 ATATGTATGAGACGAGACTACACAA 57.197 36.000 0.00 0.00 0.00 3.33
3188 6185 0.318120 CCGCTTTGCCATGAAAACCT 59.682 50.000 0.00 0.00 0.00 3.50
3277 6274 5.070847 AGTGGATTTCTGCAGGTTCAATTTT 59.929 36.000 15.13 0.00 0.00 1.82
3421 6432 3.922171 AAAGATGCTCAAGTCCTAGGG 57.078 47.619 9.46 0.00 0.00 3.53
3522 6533 7.451731 AGATCAAGTGGGATATTCCAAGTAA 57.548 36.000 3.59 0.00 38.64 2.24
3734 6745 9.528489 AACAGTATAACAAATTGTAAGGGACAT 57.472 29.630 0.00 0.00 38.07 3.06
4244 7261 1.135402 GTTTCGGGTGGATTGATGTGC 60.135 52.381 0.00 0.00 0.00 4.57
4245 7262 1.472480 GGTTTCGGGTGGATTGATGTG 59.528 52.381 0.00 0.00 0.00 3.21
4334 7351 3.644966 ACGTTATGTGGATGGATTGGT 57.355 42.857 0.00 0.00 0.00 3.67
4398 7415 2.165282 GCTTCTAAAGCGTGTGCATC 57.835 50.000 0.00 0.00 45.74 3.91
4439 7456 3.044894 GGATCTCTCTCCTGAATGGGTT 58.955 50.000 0.00 0.00 36.20 4.11
4465 7484 0.616395 TGTCCGGACTGGCAAGGATA 60.616 55.000 33.39 8.02 37.80 2.59
4538 7557 0.605589 TCCAGAGTCTTCGCGTCTGA 60.606 55.000 21.26 9.30 40.21 3.27
4743 7764 3.374318 TGGTCTTCCAGATCGGACA 57.626 52.632 5.89 0.00 46.36 4.02
4786 7807 1.683365 GGTTGCTGGTGATGGGCAT 60.683 57.895 0.00 0.00 35.84 4.40
4814 7835 2.191908 GTGGTGGGCACTGTGTGA 59.808 61.111 9.86 0.00 35.23 3.58
4853 7874 1.009389 CGTCGTGACCTTCCTGAAGC 61.009 60.000 1.25 0.00 37.11 3.86
4913 7943 4.475444 CCCCCTACCCGCCTCTCA 62.475 72.222 0.00 0.00 0.00 3.27
4953 7986 3.639538 CTTTTCTTCTTGGAGACGTCGA 58.360 45.455 10.46 0.00 0.00 4.20
5042 8075 0.687354 GTGAAGCTGGTGGAGGAGAA 59.313 55.000 0.00 0.00 0.00 2.87
5111 8144 1.743252 GTGCTTCTCTCTTGCGGGG 60.743 63.158 0.00 0.00 0.00 5.73
5178 8212 3.774528 CCTGGCGTGGCTGCTCTA 61.775 66.667 0.00 0.00 34.52 2.43
5206 8249 3.528370 CGGCCGACGGATCTTCCT 61.528 66.667 24.07 0.00 39.42 3.36
5300 8343 2.293118 TGGAGAGTGATTGGATCTGGGA 60.293 50.000 0.00 0.00 0.00 4.37
5391 8436 4.827087 CTCGCTGCCGCATGAGGT 62.827 66.667 17.41 0.00 35.30 3.85
5450 8534 1.484240 CTTCACCCTCTCTCCATCCAC 59.516 57.143 0.00 0.00 0.00 4.02
5556 8644 2.768344 GATCCTCCTCCCCCGCAA 60.768 66.667 0.00 0.00 0.00 4.85
5577 8665 1.728971 GTTGGATTGACTGCTCTGACG 59.271 52.381 0.00 0.00 0.00 4.35
5578 8666 2.079925 GGTTGGATTGACTGCTCTGAC 58.920 52.381 0.00 0.00 0.00 3.51
5579 8667 1.699083 TGGTTGGATTGACTGCTCTGA 59.301 47.619 0.00 0.00 0.00 3.27
5580 8668 2.189594 TGGTTGGATTGACTGCTCTG 57.810 50.000 0.00 0.00 0.00 3.35
5581 8669 3.446442 AATGGTTGGATTGACTGCTCT 57.554 42.857 0.00 0.00 0.00 4.09
5582 8670 4.517285 TCTAATGGTTGGATTGACTGCTC 58.483 43.478 0.00 0.00 0.00 4.26
5583 8671 4.574674 TCTAATGGTTGGATTGACTGCT 57.425 40.909 0.00 0.00 0.00 4.24
5584 8672 6.942532 TTATCTAATGGTTGGATTGACTGC 57.057 37.500 0.00 0.00 32.74 4.40
5585 8673 8.455903 ACATTATCTAATGGTTGGATTGACTG 57.544 34.615 13.08 0.00 45.54 3.51
5586 8674 9.784531 CTACATTATCTAATGGTTGGATTGACT 57.215 33.333 13.08 0.00 45.54 3.41
5587 8675 9.561069 ACTACATTATCTAATGGTTGGATTGAC 57.439 33.333 13.08 0.00 45.54 3.18
5625 8713 5.881923 AGTGGTACTAACTCCAAGTTTGA 57.118 39.130 8.00 0.00 39.51 2.69
5656 8744 7.912056 TTCAAACTCAATGGAGAAGATACAG 57.088 36.000 3.42 0.00 44.26 2.74
5665 8753 7.615582 TTACTAGCATTCAAACTCAATGGAG 57.384 36.000 0.00 0.00 46.96 3.86
5726 8814 3.118298 AGGTCAAAAGGTTTGCTTTGCAT 60.118 39.130 0.00 0.00 38.76 3.96
5817 8905 5.874810 GTGTAAATACTTCAGCAGACCATCA 59.125 40.000 0.00 0.00 0.00 3.07
5944 9033 7.016296 TCCTCAGGACCCAGAAAATAAATTTT 58.984 34.615 0.00 0.37 42.24 1.82
5956 9045 2.173126 AAGAGATCCTCAGGACCCAG 57.827 55.000 0.00 0.00 32.98 4.45
6046 9136 7.540474 ACACAGACTTGAGAGGTTTATAGAA 57.460 36.000 0.00 0.00 0.00 2.10
6070 9160 2.617021 CGCTTCAGGGGGCTAAGTAAAA 60.617 50.000 0.00 0.00 0.00 1.52
6071 9161 1.065709 CGCTTCAGGGGGCTAAGTAAA 60.066 52.381 0.00 0.00 0.00 2.01
6146 9236 2.428890 TGGACACAAACCATGAAACCAC 59.571 45.455 0.00 0.00 32.03 4.16
6282 9372 2.289382 GGTTTTGCTTACCCATGGTTGG 60.289 50.000 11.73 0.00 43.23 3.77
6283 9373 2.632512 AGGTTTTGCTTACCCATGGTTG 59.367 45.455 11.73 0.00 37.09 3.77
6284 9374 2.970987 AGGTTTTGCTTACCCATGGTT 58.029 42.857 11.73 0.00 37.09 3.67
6285 9375 2.694616 AGGTTTTGCTTACCCATGGT 57.305 45.000 11.73 1.30 40.16 3.55
6563 9653 2.703536 TGGCACAAAGAGGAAGTAGACA 59.296 45.455 0.00 0.00 31.92 3.41
6619 9709 5.720202 TCTGATGACTACTTTTACGCACAT 58.280 37.500 0.00 0.00 0.00 3.21
6655 9745 0.819582 CATGGATCACAAGGCCAACC 59.180 55.000 5.01 0.00 34.95 3.77
6666 9756 5.619132 TTAAGACAGCTGATCATGGATCA 57.381 39.130 23.35 8.48 45.35 2.92
6719 9963 1.288752 CCATTCACCCGTGTTTGGC 59.711 57.895 6.08 0.00 31.13 4.52
6749 9993 6.493115 AGAGTTCATCTTGATCGGAGTGATAT 59.507 38.462 0.00 0.00 33.54 1.63
7346 10601 1.338579 CCAGGTCTCTTGAGGTGAAGC 60.339 57.143 0.00 0.00 0.00 3.86
7373 10628 0.875059 CGGAACTTTGTCTTGAGGGC 59.125 55.000 0.00 0.00 0.00 5.19
7384 10639 0.611896 CCATGGGCTTCCGGAACTTT 60.612 55.000 14.35 0.00 0.00 2.66
7474 10729 2.281900 GCAACTGTTACCCGCCCA 60.282 61.111 0.00 0.00 0.00 5.36
7541 10796 2.509916 CTCATCCCTGGAGCCAGC 59.490 66.667 11.07 0.00 42.35 4.85
7555 10810 2.601666 AGCAGCACCGTCTCCTCA 60.602 61.111 0.00 0.00 0.00 3.86
7576 10831 3.880047 TCGTCATCGACCTTACCAAAT 57.120 42.857 0.00 0.00 41.35 2.32
7748 11003 0.660595 CGAGACGCAACAAGACTCGT 60.661 55.000 0.00 0.00 44.35 4.18
7795 11058 5.940192 AGCACATCGACATCAAACTAAAA 57.060 34.783 0.00 0.00 0.00 1.52
7796 11059 8.764287 CATATAGCACATCGACATCAAACTAAA 58.236 33.333 0.00 0.00 0.00 1.85
7864 11130 7.175990 TCCCTTGTTGGAACTAAATACATTCAC 59.824 37.037 0.00 0.00 38.35 3.18
7893 11159 4.720046 TGGGTGAAACTTTATACAGCACA 58.280 39.130 0.00 0.00 36.74 4.57
7914 11180 4.432712 CCTGGGTTTTCACTTCAGTTTTG 58.567 43.478 0.00 0.00 0.00 2.44
7973 11239 1.272769 ACGTGCAGGTAGGAGAAAGTC 59.727 52.381 10.95 0.00 0.00 3.01
8052 11319 2.827755 TCATCTGTACAGCTACCCCAA 58.172 47.619 18.45 0.00 0.00 4.12
8123 11390 3.372206 CGATCTTCCTACAGCAAAGTTGG 59.628 47.826 0.00 0.00 36.01 3.77
8124 11391 3.997021 ACGATCTTCCTACAGCAAAGTTG 59.003 43.478 0.00 0.00 0.00 3.16
8125 11392 4.273148 ACGATCTTCCTACAGCAAAGTT 57.727 40.909 0.00 0.00 0.00 2.66
8126 11393 3.963428 ACGATCTTCCTACAGCAAAGT 57.037 42.857 0.00 0.00 0.00 2.66
8127 11394 4.744570 TGTACGATCTTCCTACAGCAAAG 58.255 43.478 0.00 0.00 0.00 2.77
8129 11396 4.371855 CTGTACGATCTTCCTACAGCAA 57.628 45.455 0.00 0.00 33.04 3.91
8132 11399 4.355437 CTTGCTGTACGATCTTCCTACAG 58.645 47.826 0.00 8.44 40.20 2.74
8133 11400 3.428999 GCTTGCTGTACGATCTTCCTACA 60.429 47.826 0.00 0.00 0.00 2.74
8134 11401 3.117046 GCTTGCTGTACGATCTTCCTAC 58.883 50.000 0.00 0.00 0.00 3.18
8218 11492 1.300465 CGATGGGCTCATCCTGTCG 60.300 63.158 20.95 6.56 45.20 4.35
8221 11495 0.395686 ATGACGATGGGCTCATCCTG 59.604 55.000 20.95 10.32 45.20 3.86
8229 11503 1.597663 CGGAAAAGTATGACGATGGGC 59.402 52.381 0.00 0.00 0.00 5.36
8231 11505 4.027132 CGTTACGGAAAAGTATGACGATGG 60.027 45.833 0.00 0.00 34.56 3.51
8237 11511 3.194116 AGGCTCGTTACGGAAAAGTATGA 59.806 43.478 4.53 0.00 0.00 2.15
8283 11571 0.898789 TGGGAGTGAGACGGACCTTC 60.899 60.000 0.00 0.00 0.00 3.46
8288 11576 1.697432 ACATTTTGGGAGTGAGACGGA 59.303 47.619 0.00 0.00 0.00 4.69
8289 11577 1.806542 CACATTTTGGGAGTGAGACGG 59.193 52.381 0.00 0.00 35.33 4.79
8290 11578 1.806542 CCACATTTTGGGAGTGAGACG 59.193 52.381 0.00 0.00 42.54 4.18
8301 11589 3.204526 TGAAGCCTTTTGCCACATTTTG 58.795 40.909 0.00 0.00 42.71 2.44
8316 11604 1.737793 CACGGTTGTATTCCTGAAGCC 59.262 52.381 0.00 0.00 0.00 4.35
8344 11632 2.707791 ACATGGCTGTGACTATGGCTAT 59.292 45.455 0.00 0.00 33.16 2.97
8345 11633 2.118679 ACATGGCTGTGACTATGGCTA 58.881 47.619 0.00 0.00 33.16 3.93
8346 11634 0.914644 ACATGGCTGTGACTATGGCT 59.085 50.000 0.00 0.00 33.16 4.75
8347 11635 1.672881 GAACATGGCTGTGACTATGGC 59.327 52.381 0.00 0.00 35.22 4.40
8348 11636 3.272574 AGAACATGGCTGTGACTATGG 57.727 47.619 0.00 0.00 35.22 2.74
8349 11637 4.696877 TGAAAGAACATGGCTGTGACTATG 59.303 41.667 0.00 0.00 35.22 2.23
8357 11645 2.821378 TGGTGATGAAAGAACATGGCTG 59.179 45.455 0.00 0.00 0.00 4.85
8358 11646 2.821969 GTGGTGATGAAAGAACATGGCT 59.178 45.455 0.00 0.00 0.00 4.75
8360 11648 4.520111 TCTTGTGGTGATGAAAGAACATGG 59.480 41.667 0.00 0.00 0.00 3.66
8370 11658 4.144297 CCTTCCTTTTCTTGTGGTGATGA 58.856 43.478 0.00 0.00 0.00 2.92
8377 11665 3.888930 TGTTAGGCCTTCCTTTTCTTGTG 59.111 43.478 12.58 0.00 40.66 3.33
8387 11675 2.750888 CGCGCTTGTTAGGCCTTCC 61.751 63.158 12.58 1.67 0.00 3.46
8389 11677 3.431725 GCGCGCTTGTTAGGCCTT 61.432 61.111 26.67 0.00 0.00 4.35
8390 11678 3.976701 ATGCGCGCTTGTTAGGCCT 62.977 57.895 33.29 11.78 0.00 5.19
8391 11679 3.508840 ATGCGCGCTTGTTAGGCC 61.509 61.111 33.29 0.00 0.00 5.19
8392 11680 2.051804 ATCATGCGCGCTTGTTAGGC 62.052 55.000 36.12 7.15 0.00 3.93
8393 11681 1.070577 GTATCATGCGCGCTTGTTAGG 60.071 52.381 36.12 18.65 0.00 2.69
8394 11682 1.860950 AGTATCATGCGCGCTTGTTAG 59.139 47.619 36.12 18.57 0.00 2.34
8395 11683 1.934589 AGTATCATGCGCGCTTGTTA 58.065 45.000 36.12 30.47 0.00 2.41
8396 11684 1.934589 TAGTATCATGCGCGCTTGTT 58.065 45.000 36.12 31.36 0.00 2.83
8397 11685 2.061773 GATAGTATCATGCGCGCTTGT 58.938 47.619 36.12 27.33 0.00 3.16
8399 11687 2.061773 GTGATAGTATCATGCGCGCTT 58.938 47.619 33.29 24.21 42.04 4.68
8400 11688 1.670087 GGTGATAGTATCATGCGCGCT 60.670 52.381 33.29 14.83 42.04 5.92
8401 11689 0.716108 GGTGATAGTATCATGCGCGC 59.284 55.000 27.26 27.26 42.04 6.86
8402 11690 0.984829 CGGTGATAGTATCATGCGCG 59.015 55.000 15.77 0.00 42.04 6.86
8428 11719 0.994995 CTCGCTGATGGAAGAACACG 59.005 55.000 0.00 0.00 0.00 4.49
8429 11720 2.370281 TCTCGCTGATGGAAGAACAC 57.630 50.000 0.00 0.00 0.00 3.32
8430 11721 2.932622 GCTTCTCGCTGATGGAAGAACA 60.933 50.000 0.00 0.00 38.82 3.18
8431 11722 1.663135 GCTTCTCGCTGATGGAAGAAC 59.337 52.381 0.00 0.00 38.82 3.01
8432 11723 2.015736 GCTTCTCGCTGATGGAAGAA 57.984 50.000 0.00 0.00 38.82 2.52
8433 11724 3.748863 GCTTCTCGCTGATGGAAGA 57.251 52.632 0.00 0.00 38.82 2.87
8445 11736 4.278975 TCTTTTCCCTTCTCAGCTTCTC 57.721 45.455 0.00 0.00 0.00 2.87
8469 11760 5.105106 AGCTAGAAGTAGAAGCCTTCCTTTC 60.105 44.000 0.00 3.32 39.29 2.62
8488 11779 1.801771 CGTCGGAGAGACCATAGCTAG 59.198 57.143 0.00 0.00 46.92 3.42
8489 11780 1.415289 TCGTCGGAGAGACCATAGCTA 59.585 52.381 0.00 0.00 46.92 3.32
8491 11782 0.589223 CTCGTCGGAGAGACCATAGC 59.411 60.000 2.53 0.00 46.92 2.97
8493 11784 0.179026 CCCTCGTCGGAGAGACCATA 60.179 60.000 9.16 0.00 46.92 2.74
8496 11787 2.829458 CCCCTCGTCGGAGAGACC 60.829 72.222 9.16 0.00 46.92 3.85
8522 11813 1.458827 CGCCGACGACTAGGAGTATAC 59.541 57.143 0.00 0.00 43.93 1.47
8524 11815 0.883814 CCGCCGACGACTAGGAGTAT 60.884 60.000 0.00 0.00 43.93 2.12
8525 11816 1.522355 CCGCCGACGACTAGGAGTA 60.522 63.158 0.00 0.00 43.93 2.59
8526 11817 2.823147 CCGCCGACGACTAGGAGT 60.823 66.667 0.00 0.00 43.93 3.85
8560 11851 3.453070 GATGCTGGAGGCGGAGGTC 62.453 68.421 0.00 0.00 45.43 3.85
8635 11926 1.963338 GTATGCAGATGAGGCGGCC 60.963 63.158 12.11 12.11 0.00 6.13
8652 11943 6.272318 TGTATACGAAATTACGAAATCCGGT 58.728 36.000 0.00 0.00 43.93 5.28
8657 11948 8.316046 CGTTGACTGTATACGAAATTACGAAAT 58.684 33.333 8.05 0.00 37.47 2.17
8661 11952 6.779385 TCGTTGACTGTATACGAAATTACG 57.221 37.500 12.58 4.49 40.86 3.18
8665 11956 6.919188 CGAAATCGTTGACTGTATACGAAAT 58.081 36.000 17.09 10.90 45.92 2.17
8666 11957 6.308710 CGAAATCGTTGACTGTATACGAAA 57.691 37.500 17.09 1.05 45.92 3.46
8667 11958 5.920085 CGAAATCGTTGACTGTATACGAA 57.080 39.130 17.09 5.38 45.92 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.