Multiple sequence alignment - TraesCS3A01G270100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G270100 chr3A 100.000 4998 0 0 1 4998 496986494 496991491 0.000000e+00 9230.0
1 TraesCS3A01G270100 chr3A 92.000 125 8 2 4872 4996 715718677 715718555 1.850000e-39 174.0
2 TraesCS3A01G270100 chr3A 93.162 117 5 3 4883 4998 662948301 662948187 8.600000e-38 169.0
3 TraesCS3A01G270100 chr3A 92.241 116 8 1 4883 4998 620605441 620605327 4.000000e-36 163.0
4 TraesCS3A01G270100 chr3A 95.745 47 2 0 3541 3587 491189464 491189510 5.370000e-10 76.8
5 TraesCS3A01G270100 chr3A 91.667 48 4 0 3542 3589 527938657 527938704 3.230000e-07 67.6
6 TraesCS3A01G270100 chr3D 96.745 3933 102 14 611 4532 374355865 374359782 0.000000e+00 6530.0
7 TraesCS3A01G270100 chr3D 93.989 183 5 1 24 206 374355122 374355298 6.380000e-69 272.0
8 TraesCS3A01G270100 chr3D 91.566 83 6 1 4746 4827 374359787 374359869 4.090000e-21 113.0
9 TraesCS3A01G270100 chr3B 94.982 2850 102 16 26 2853 488186671 488189501 0.000000e+00 4433.0
10 TraesCS3A01G270100 chr3B 90.838 895 59 13 2849 3734 488189592 488190472 0.000000e+00 1177.0
11 TraesCS3A01G270100 chr3B 92.044 817 45 7 3727 4532 488190548 488191355 0.000000e+00 1131.0
12 TraesCS3A01G270100 chr3B 92.754 69 4 1 4746 4814 488191361 488191428 1.150000e-16 99.0
13 TraesCS3A01G270100 chr3B 86.667 60 5 3 3531 3587 691739121 691739180 4.180000e-06 63.9
14 TraesCS3A01G270100 chr4A 91.515 165 12 2 4583 4746 531257956 531257793 5.030000e-55 226.0
15 TraesCS3A01G270100 chr4A 92.241 116 8 1 4884 4998 122085056 122085171 4.000000e-36 163.0
16 TraesCS3A01G270100 chr4A 92.982 57 4 0 4532 4588 531294477 531294421 3.210000e-12 84.2
17 TraesCS3A01G270100 chr7B 91.411 163 13 1 4583 4744 144740610 144740448 6.510000e-54 222.0
18 TraesCS3A01G270100 chr7B 93.478 46 3 0 3542 3587 490685137 490685182 8.980000e-08 69.4
19 TraesCS3A01G270100 chr7B 93.333 45 3 0 4544 4588 137891263 137891307 3.230000e-07 67.6
20 TraesCS3A01G270100 chr6A 93.377 151 8 2 4584 4733 319238212 319238361 6.510000e-54 222.0
21 TraesCS3A01G270100 chr2D 90.173 173 14 3 4575 4746 120561322 120561492 6.510000e-54 222.0
22 TraesCS3A01G270100 chr2B 90.964 166 14 1 4583 4747 195613078 195613243 6.510000e-54 222.0
23 TraesCS3A01G270100 chr7D 90.909 165 14 1 4583 4746 268193385 268193221 2.340000e-53 220.0
24 TraesCS3A01G270100 chr7D 94.737 57 3 0 4532 4588 118396293 118396349 6.890000e-14 89.8
25 TraesCS3A01G270100 chr5B 90.909 165 13 2 4583 4746 663242326 663242163 2.340000e-53 220.0
26 TraesCS3A01G270100 chr7A 91.358 162 11 2 4583 4741 85073333 85073494 8.420000e-53 219.0
27 TraesCS3A01G270100 chr7A 94.340 53 3 0 4533 4585 58332313 58332365 1.150000e-11 82.4
28 TraesCS3A01G270100 chr4B 87.912 182 19 2 4583 4761 545236730 545236549 1.410000e-50 211.0
29 TraesCS3A01G270100 chr4B 93.617 47 3 0 4536 4582 562595129 562595175 2.500000e-08 71.3
30 TraesCS3A01G270100 chrUn 92.562 121 9 0 4878 4998 306175939 306175819 1.850000e-39 174.0
31 TraesCS3A01G270100 chrUn 92.562 121 9 0 4878 4998 345480036 345479916 1.850000e-39 174.0
32 TraesCS3A01G270100 chr5D 92.500 120 8 1 4880 4998 528733047 528732928 2.390000e-38 171.0
33 TraesCS3A01G270100 chr4D 93.750 112 7 0 4885 4996 469305454 469305565 8.600000e-38 169.0
34 TraesCS3A01G270100 chr5A 92.241 116 9 0 4883 4998 620006616 620006731 1.110000e-36 165.0
35 TraesCS3A01G270100 chr5A 97.561 41 1 0 3547 3587 485202106 485202066 2.500000e-08 71.3
36 TraesCS3A01G270100 chr1A 93.878 49 3 0 3542 3590 494443726 494443774 1.930000e-09 75.0
37 TraesCS3A01G270100 chr1A 95.652 46 2 0 3542 3587 567969964 567970009 1.930000e-09 75.0
38 TraesCS3A01G270100 chr2A 88.889 54 6 0 4535 4588 623166685 623166632 3.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G270100 chr3A 496986494 496991491 4997 False 9230 9230 100.0000 1 4998 1 chr3A.!!$F2 4997
1 TraesCS3A01G270100 chr3D 374355122 374359869 4747 False 2305 6530 94.1000 24 4827 3 chr3D.!!$F1 4803
2 TraesCS3A01G270100 chr3B 488186671 488191428 4757 False 1710 4433 92.6545 26 4814 4 chr3B.!!$F2 4788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 721 0.321671 CGTGGTAGCATATGAGGGGG 59.678 60.000 6.97 0.0 0.00 5.40 F
1056 1287 0.108945 GGTCGGTTAAGGACTGGTCG 60.109 60.000 6.56 0.0 35.23 4.79 F
1707 1938 1.415659 GCAGAGTGGCCATATCAGTCT 59.584 52.381 9.72 0.0 43.42 3.24 F
3437 3769 0.877743 GGCTTGCAGGTGAGTTCTTC 59.122 55.000 0.00 0.0 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 1834 1.445942 CCTGGTGTGGTCGAACTGT 59.554 57.895 0.33 0.0 0.00 3.55 R
2901 3231 1.277557 AGAACTCCTGATGGCAGACAC 59.722 52.381 0.00 0.0 45.17 3.67 R
3649 3987 2.357154 GGCTCACCCCAACAGATTGTAT 60.357 50.000 0.00 0.0 33.60 2.29 R
4830 5260 0.036010 ATTGACTGGTGCCTTCTCCG 60.036 55.000 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 72 8.608185 AAATCATGTGGGGTACTCAAATATTT 57.392 30.769 0.00 0.00 0.00 1.40
64 73 8.608185 AATCATGTGGGGTACTCAAATATTTT 57.392 30.769 0.00 0.00 0.00 1.82
65 74 7.639113 TCATGTGGGGTACTCAAATATTTTC 57.361 36.000 0.00 0.00 0.00 2.29
66 75 6.605594 TCATGTGGGGTACTCAAATATTTTCC 59.394 38.462 0.00 0.00 0.00 3.13
67 76 6.147437 TGTGGGGTACTCAAATATTTTCCT 57.853 37.500 0.00 0.00 0.00 3.36
68 77 6.557568 TGTGGGGTACTCAAATATTTTCCTT 58.442 36.000 0.00 0.00 0.00 3.36
109 118 6.566187 GCATTGACTAGCTCAGCATATCTTTG 60.566 42.308 0.00 0.00 0.00 2.77
166 175 2.094026 CCTGGAGGGTTTAAATGCAAGC 60.094 50.000 0.00 0.00 0.00 4.01
249 259 2.765502 ACCATTACCTCCTCCTCTTCC 58.234 52.381 0.00 0.00 0.00 3.46
279 289 4.410400 CCCTCCGCCCTCACCAAC 62.410 72.222 0.00 0.00 0.00 3.77
321 537 1.227380 CGAATTCCTCCGAGGCCAG 60.227 63.158 9.87 0.00 34.61 4.85
445 663 4.003648 CCGAGGTATTTATTCCATGCCTC 58.996 47.826 6.91 6.91 45.46 4.70
471 689 4.875544 TTGTTTTCTCGAACAGAACCAG 57.124 40.909 0.00 0.00 41.13 4.00
502 721 0.321671 CGTGGTAGCATATGAGGGGG 59.678 60.000 6.97 0.00 0.00 5.40
609 837 2.623878 TCTTGCTGTTGTTTCCGGTA 57.376 45.000 0.00 0.00 0.00 4.02
630 859 5.863935 GGTACCATTTGCTCTTTTGACATTC 59.136 40.000 7.15 0.00 0.00 2.67
640 869 5.182760 GCTCTTTTGACATTCAGATTGGAGT 59.817 40.000 0.00 0.00 0.00 3.85
645 874 7.672983 TTTGACATTCAGATTGGAGTACTTC 57.327 36.000 0.00 0.00 0.00 3.01
690 919 5.374071 AGTTTCCTCCTTTGTTGTTATCGT 58.626 37.500 0.00 0.00 0.00 3.73
696 925 3.059461 TCCTTTGTTGTTATCGTGTTCGC 60.059 43.478 0.00 0.00 36.96 4.70
761 990 1.172180 TTTTGGTTGCAGCGGGAGAG 61.172 55.000 0.00 0.00 0.00 3.20
774 1003 2.012673 CGGGAGAGAAGGCTGAAATTG 58.987 52.381 0.00 0.00 0.00 2.32
815 1044 4.006319 GGAGTTGGAATTTCTGAGGACAG 58.994 47.826 0.00 0.00 44.66 3.51
980 1211 2.854777 CACTCTAGAACTGTACATGCGC 59.145 50.000 0.00 0.00 0.00 6.09
1056 1287 0.108945 GGTCGGTTAAGGACTGGTCG 60.109 60.000 6.56 0.00 35.23 4.79
1371 1602 3.463048 AAGGACAGGCTTCCATTTGAT 57.537 42.857 15.14 0.00 38.25 2.57
1689 1920 1.833630 CCTCTTCTGTGGATAGTGGCA 59.166 52.381 0.00 0.00 0.00 4.92
1707 1938 1.415659 GCAGAGTGGCCATATCAGTCT 59.584 52.381 9.72 0.00 43.42 3.24
1890 2121 3.550820 TGAGGAGAGAGCATACTCAGTC 58.449 50.000 0.00 0.00 46.09 3.51
2007 2241 7.094805 TGACACTCTTTAACCAGCACAAATATC 60.095 37.037 0.00 0.00 0.00 1.63
2085 2319 6.444633 GCTTATGCTCACCTTCGTATTACTA 58.555 40.000 0.00 0.00 36.03 1.82
2335 2569 8.690203 TTCACTTTTGTCATCCTTATTTCTGA 57.310 30.769 0.00 0.00 0.00 3.27
2533 2767 7.426929 AAGTGTCTTGCTTGTTTAGTCATAG 57.573 36.000 0.00 0.00 0.00 2.23
3059 3391 7.433719 CCGTTTACAATTTCACATCAAAAGTCA 59.566 33.333 0.00 0.00 0.00 3.41
3079 3411 4.335315 GTCAAAACATCTGTCACTGAACCA 59.665 41.667 0.00 0.00 0.00 3.67
3204 3536 1.339631 GGTACATGGCCAGTAGCAACA 60.340 52.381 26.18 5.01 46.50 3.33
3297 3629 5.220739 GCATACAAACCAGAAGAGCAGTATG 60.221 44.000 0.00 0.00 40.08 2.39
3318 3650 2.785679 CTTCGTCGATTTCCAATTGGC 58.214 47.619 20.33 4.65 34.44 4.52
3437 3769 0.877743 GGCTTGCAGGTGAGTTCTTC 59.122 55.000 0.00 0.00 0.00 2.87
3460 3795 9.305925 CTTCATCAAAATTTCAAATACCTAGGC 57.694 33.333 9.30 0.00 0.00 3.93
3638 3976 8.319143 ACGAACTGCAGTTGTTATTAATTACT 57.681 30.769 35.67 7.27 38.56 2.24
3668 4007 3.955471 ACATACAATCTGTTGGGGTGAG 58.045 45.455 0.00 0.00 39.70 3.51
3706 4045 9.833917 CATATGAATATCCATGAGAGCAAGTAT 57.166 33.333 0.00 0.00 0.00 2.12
3743 4165 8.306313 TGATCTAAAGGAACTAGAACATAGCA 57.694 34.615 0.00 0.00 38.49 3.49
3749 4171 6.313519 AGGAACTAGAACATAGCAATTCCA 57.686 37.500 0.00 0.00 37.43 3.53
3752 4174 8.664079 AGGAACTAGAACATAGCAATTCCATAT 58.336 33.333 0.00 0.00 37.43 1.78
4261 4685 3.358118 ACCCTTTCTTTGTTTCGGTTCA 58.642 40.909 0.00 0.00 0.00 3.18
4316 4740 2.223711 GGAAGTTTGTCACCGTTGCAAT 60.224 45.455 0.59 0.00 0.00 3.56
4388 4818 4.687483 GCAAAATCACAGATTGGGTTTGAG 59.313 41.667 0.00 0.00 34.07 3.02
4397 4827 1.388547 TTGGGTTTGAGAGTGTGTGC 58.611 50.000 0.00 0.00 0.00 4.57
4398 4828 0.546122 TGGGTTTGAGAGTGTGTGCT 59.454 50.000 0.00 0.00 0.00 4.40
4399 4829 0.947244 GGGTTTGAGAGTGTGTGCTG 59.053 55.000 0.00 0.00 0.00 4.41
4400 4830 1.668419 GGTTTGAGAGTGTGTGCTGT 58.332 50.000 0.00 0.00 0.00 4.40
4401 4831 1.599542 GGTTTGAGAGTGTGTGCTGTC 59.400 52.381 0.00 0.00 0.00 3.51
4402 4832 1.599542 GTTTGAGAGTGTGTGCTGTCC 59.400 52.381 0.00 0.00 0.00 4.02
4455 4885 5.899547 TCTCAGCTGTAATTCTCCCTATGAA 59.100 40.000 14.67 0.00 0.00 2.57
4456 4886 6.556495 TCTCAGCTGTAATTCTCCCTATGAAT 59.444 38.462 14.67 0.00 35.88 2.57
4457 4887 6.528321 TCAGCTGTAATTCTCCCTATGAATG 58.472 40.000 14.67 0.00 34.74 2.67
4459 4889 6.769822 CAGCTGTAATTCTCCCTATGAATGTT 59.230 38.462 5.25 0.00 34.74 2.71
4462 4892 7.500559 GCTGTAATTCTCCCTATGAATGTTCTT 59.499 37.037 0.00 0.00 34.74 2.52
4463 4893 8.737168 TGTAATTCTCCCTATGAATGTTCTTG 57.263 34.615 0.00 0.00 34.74 3.02
4464 4894 8.548025 TGTAATTCTCCCTATGAATGTTCTTGA 58.452 33.333 0.00 0.00 34.74 3.02
4465 4895 9.566432 GTAATTCTCCCTATGAATGTTCTTGAT 57.434 33.333 0.00 0.00 34.74 2.57
4467 4897 7.870509 TTCTCCCTATGAATGTTCTTGATTG 57.129 36.000 0.00 0.00 0.00 2.67
4468 4898 6.359804 TCTCCCTATGAATGTTCTTGATTGG 58.640 40.000 0.00 0.00 0.00 3.16
4471 4901 5.658190 CCCTATGAATGTTCTTGATTGGGTT 59.342 40.000 0.00 0.00 0.00 4.11
4473 4903 7.037438 CCTATGAATGTTCTTGATTGGGTTTG 58.963 38.462 0.00 0.00 0.00 2.93
4474 4904 6.669125 ATGAATGTTCTTGATTGGGTTTGA 57.331 33.333 0.00 0.00 0.00 2.69
4475 4905 5.841810 TGAATGTTCTTGATTGGGTTTGAC 58.158 37.500 0.00 0.00 0.00 3.18
4477 4907 2.621055 TGTTCTTGATTGGGTTTGACGG 59.379 45.455 0.00 0.00 0.00 4.79
4494 4924 0.610785 CGGGTTTGGCCATACACCTT 60.611 55.000 25.09 0.00 39.65 3.50
4499 4929 3.767131 GGTTTGGCCATACACCTTATGTT 59.233 43.478 25.09 0.00 38.89 2.71
4526 4956 3.948735 TTTTTGGGGGCTCGTCTAG 57.051 52.632 0.00 0.00 0.00 2.43
4527 4957 1.061546 TTTTTGGGGGCTCGTCTAGT 58.938 50.000 0.00 0.00 0.00 2.57
4532 4962 0.473326 GGGGGCTCGTCTAGTCTCTA 59.527 60.000 0.00 0.00 27.86 2.43
4533 4963 1.543871 GGGGGCTCGTCTAGTCTCTAG 60.544 61.905 0.00 0.00 27.86 2.43
4535 4965 1.543871 GGGCTCGTCTAGTCTCTAGGG 60.544 61.905 4.32 0.00 0.00 3.53
4536 4966 1.232119 GCTCGTCTAGTCTCTAGGGC 58.768 60.000 4.32 1.91 0.00 5.19
4538 4968 2.812613 GCTCGTCTAGTCTCTAGGGCAT 60.813 54.545 4.32 0.00 0.00 4.40
4539 4969 2.811431 CTCGTCTAGTCTCTAGGGCATG 59.189 54.545 4.32 0.00 0.00 4.06
4541 4971 3.390311 TCGTCTAGTCTCTAGGGCATGTA 59.610 47.826 0.00 0.00 0.00 2.29
4542 4972 4.135306 CGTCTAGTCTCTAGGGCATGTAA 58.865 47.826 0.00 0.00 0.00 2.41
4543 4973 4.579340 CGTCTAGTCTCTAGGGCATGTAAA 59.421 45.833 0.00 0.00 0.00 2.01
4544 4974 5.067413 CGTCTAGTCTCTAGGGCATGTAAAA 59.933 44.000 0.00 0.00 0.00 1.52
4545 4975 6.239064 CGTCTAGTCTCTAGGGCATGTAAAAT 60.239 42.308 0.00 0.00 0.00 1.82
4546 4976 6.926272 GTCTAGTCTCTAGGGCATGTAAAATG 59.074 42.308 0.00 0.00 0.00 2.32
4547 4977 5.041191 AGTCTCTAGGGCATGTAAAATGG 57.959 43.478 0.00 0.00 0.00 3.16
4548 4978 4.475016 AGTCTCTAGGGCATGTAAAATGGT 59.525 41.667 0.00 0.00 0.00 3.55
4549 4979 5.044846 AGTCTCTAGGGCATGTAAAATGGTT 60.045 40.000 0.00 0.00 0.00 3.67
4550 4980 5.297029 GTCTCTAGGGCATGTAAAATGGTTC 59.703 44.000 0.00 0.00 0.00 3.62
4551 4981 5.191722 TCTCTAGGGCATGTAAAATGGTTCT 59.808 40.000 0.00 0.00 0.00 3.01
4552 4982 6.385759 TCTCTAGGGCATGTAAAATGGTTCTA 59.614 38.462 0.00 0.00 0.00 2.10
4553 4983 7.072454 TCTCTAGGGCATGTAAAATGGTTCTAT 59.928 37.037 0.00 0.00 0.00 1.98
4554 4984 7.582719 TCTAGGGCATGTAAAATGGTTCTATT 58.417 34.615 0.00 0.00 0.00 1.73
4555 4985 8.058847 TCTAGGGCATGTAAAATGGTTCTATTT 58.941 33.333 0.00 0.00 31.87 1.40
4556 4986 7.494922 AGGGCATGTAAAATGGTTCTATTTT 57.505 32.000 10.63 10.63 41.62 1.82
4557 4987 8.602472 AGGGCATGTAAAATGGTTCTATTTTA 57.398 30.769 9.05 9.05 39.96 1.52
4558 4988 9.041354 AGGGCATGTAAAATGGTTCTATTTTAA 57.959 29.630 12.98 6.98 41.52 1.52
4559 4989 9.313118 GGGCATGTAAAATGGTTCTATTTTAAG 57.687 33.333 12.98 9.03 41.52 1.85
4568 4998 9.840427 AAATGGTTCTATTTTAAGAATGTCACG 57.160 29.630 0.00 0.00 37.78 4.35
4569 4999 7.972832 TGGTTCTATTTTAAGAATGTCACGT 57.027 32.000 0.00 0.00 37.78 4.49
4570 5000 9.661563 ATGGTTCTATTTTAAGAATGTCACGTA 57.338 29.630 0.00 0.00 37.78 3.57
4571 5001 9.146984 TGGTTCTATTTTAAGAATGTCACGTAG 57.853 33.333 0.00 0.00 37.78 3.51
4572 5002 8.601476 GGTTCTATTTTAAGAATGTCACGTAGG 58.399 37.037 0.00 0.00 37.78 3.18
4573 5003 9.362539 GTTCTATTTTAAGAATGTCACGTAGGA 57.637 33.333 0.00 0.00 37.78 2.94
4580 5010 9.878667 TTTAAGAATGTCACGTAGGATAAATGA 57.121 29.630 0.00 0.00 0.00 2.57
4582 5012 7.953158 AGAATGTCACGTAGGATAAATGATG 57.047 36.000 0.00 0.00 0.00 3.07
4583 5013 7.726216 AGAATGTCACGTAGGATAAATGATGA 58.274 34.615 0.00 0.00 0.00 2.92
4584 5014 7.869937 AGAATGTCACGTAGGATAAATGATGAG 59.130 37.037 0.00 0.00 0.00 2.90
4585 5015 6.709018 TGTCACGTAGGATAAATGATGAGA 57.291 37.500 0.00 0.00 0.00 3.27
4586 5016 7.290110 TGTCACGTAGGATAAATGATGAGAT 57.710 36.000 0.00 0.00 0.00 2.75
4587 5017 7.147976 TGTCACGTAGGATAAATGATGAGATG 58.852 38.462 0.00 0.00 0.00 2.90
4588 5018 7.014230 TGTCACGTAGGATAAATGATGAGATGA 59.986 37.037 0.00 0.00 0.00 2.92
4589 5019 8.031864 GTCACGTAGGATAAATGATGAGATGAT 58.968 37.037 0.00 0.00 0.00 2.45
4590 5020 8.246871 TCACGTAGGATAAATGATGAGATGATC 58.753 37.037 0.00 0.00 0.00 2.92
4591 5021 8.249638 CACGTAGGATAAATGATGAGATGATCT 58.750 37.037 0.00 0.00 0.00 2.75
4592 5022 8.465999 ACGTAGGATAAATGATGAGATGATCTC 58.534 37.037 15.36 15.36 43.65 2.75
4593 5023 8.685427 CGTAGGATAAATGATGAGATGATCTCT 58.315 37.037 21.83 8.75 43.73 3.10
4597 5027 9.316730 GGATAAATGATGAGATGATCTCTTAGC 57.683 37.037 21.83 13.92 43.73 3.09
4598 5028 9.872721 GATAAATGATGAGATGATCTCTTAGCA 57.127 33.333 21.83 12.67 43.73 3.49
4599 5029 7.966246 AAATGATGAGATGATCTCTTAGCAC 57.034 36.000 21.83 6.03 43.73 4.40
4600 5030 6.667558 ATGATGAGATGATCTCTTAGCACA 57.332 37.500 21.83 10.87 43.73 4.57
4601 5031 6.475596 TGATGAGATGATCTCTTAGCACAA 57.524 37.500 21.83 0.95 43.73 3.33
4602 5032 7.063934 TGATGAGATGATCTCTTAGCACAAT 57.936 36.000 21.83 5.77 43.73 2.71
4603 5033 8.186709 TGATGAGATGATCTCTTAGCACAATA 57.813 34.615 21.83 0.00 43.73 1.90
4604 5034 8.813951 TGATGAGATGATCTCTTAGCACAATAT 58.186 33.333 21.83 4.41 43.73 1.28
4605 5035 9.089601 GATGAGATGATCTCTTAGCACAATATG 57.910 37.037 21.83 0.00 43.73 1.78
4606 5036 7.960262 TGAGATGATCTCTTAGCACAATATGT 58.040 34.615 21.83 0.00 43.73 2.29
4607 5037 8.087136 TGAGATGATCTCTTAGCACAATATGTC 58.913 37.037 21.83 0.00 43.73 3.06
4608 5038 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
4609 5039 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
4610 5040 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
4611 5041 7.960262 TGATCTCTTAGCACAATATGTCTCAT 58.040 34.615 0.00 0.00 0.00 2.90
4612 5042 8.087136 TGATCTCTTAGCACAATATGTCTCATC 58.913 37.037 0.00 0.00 0.00 2.92
4613 5043 7.352079 TCTCTTAGCACAATATGTCTCATCA 57.648 36.000 0.00 0.00 0.00 3.07
4614 5044 7.960262 TCTCTTAGCACAATATGTCTCATCAT 58.040 34.615 0.00 0.00 0.00 2.45
4615 5045 7.871463 TCTCTTAGCACAATATGTCTCATCATG 59.129 37.037 0.00 0.00 0.00 3.07
4616 5046 7.503549 TCTTAGCACAATATGTCTCATCATGT 58.496 34.615 0.00 0.00 0.00 3.21
4617 5047 7.989170 TCTTAGCACAATATGTCTCATCATGTT 59.011 33.333 0.00 0.00 31.24 2.71
4618 5048 8.510243 TTAGCACAATATGTCTCATCATGTTT 57.490 30.769 0.00 0.00 29.25 2.83
4619 5049 7.400599 AGCACAATATGTCTCATCATGTTTT 57.599 32.000 0.00 0.00 29.25 2.43
4620 5050 7.833786 AGCACAATATGTCTCATCATGTTTTT 58.166 30.769 0.00 0.00 29.25 1.94
4621 5051 8.959548 AGCACAATATGTCTCATCATGTTTTTA 58.040 29.630 0.00 0.00 29.25 1.52
4622 5052 9.571810 GCACAATATGTCTCATCATGTTTTTAA 57.428 29.630 0.00 0.00 29.25 1.52
4674 5104 9.685276 TTAAGAGATGATCCATTGTAAACATGT 57.315 29.630 0.00 0.00 0.00 3.21
4675 5105 8.585471 AAGAGATGATCCATTGTAAACATGTT 57.415 30.769 4.92 4.92 0.00 2.71
4676 5106 8.585471 AGAGATGATCCATTGTAAACATGTTT 57.415 30.769 25.99 25.99 36.63 2.83
4677 5107 9.028284 AGAGATGATCCATTGTAAACATGTTTT 57.972 29.630 27.66 12.78 34.23 2.43
4678 5108 9.643693 GAGATGATCCATTGTAAACATGTTTTT 57.356 29.630 27.66 8.57 34.23 1.94
4788 5218 0.317160 CGGAGTGGTGTCTGCTTGTA 59.683 55.000 0.00 0.00 0.00 2.41
4804 5234 0.888736 TGTATTGGCACTGCAGCGTT 60.889 50.000 15.27 0.00 34.64 4.84
4814 5244 0.110056 CTGCAGCGTTGTGATTCACC 60.110 55.000 14.05 0.00 32.73 4.02
4824 5254 4.613622 CGTTGTGATTCACCTTTGGATGTC 60.614 45.833 14.05 0.00 32.73 3.06
4825 5255 4.097551 TGTGATTCACCTTTGGATGTCA 57.902 40.909 14.05 0.00 32.73 3.58
4826 5256 4.074259 TGTGATTCACCTTTGGATGTCAG 58.926 43.478 14.05 0.00 32.73 3.51
4828 5258 3.074390 TGATTCACCTTTGGATGTCAGGT 59.926 43.478 0.00 0.00 0.00 4.00
4829 5259 3.593442 TTCACCTTTGGATGTCAGGTT 57.407 42.857 0.00 0.00 0.00 3.50
4830 5260 3.140325 TCACCTTTGGATGTCAGGTTC 57.860 47.619 0.00 0.00 0.00 3.62
4831 5261 1.806542 CACCTTTGGATGTCAGGTTCG 59.193 52.381 0.00 0.00 0.00 3.95
4832 5262 1.271379 ACCTTTGGATGTCAGGTTCGG 60.271 52.381 0.00 0.00 0.00 4.30
4833 5263 1.003118 CCTTTGGATGTCAGGTTCGGA 59.997 52.381 0.00 0.00 0.00 4.55
4834 5264 2.350522 CTTTGGATGTCAGGTTCGGAG 58.649 52.381 0.00 0.00 0.00 4.63
4835 5265 1.639722 TTGGATGTCAGGTTCGGAGA 58.360 50.000 0.00 0.00 0.00 3.71
4836 5266 1.639722 TGGATGTCAGGTTCGGAGAA 58.360 50.000 0.00 0.00 45.90 2.87
4837 5267 1.550524 TGGATGTCAGGTTCGGAGAAG 59.449 52.381 0.00 0.00 45.90 2.85
4838 5268 1.134670 GGATGTCAGGTTCGGAGAAGG 60.135 57.143 0.00 0.00 45.90 3.46
4839 5269 0.250513 ATGTCAGGTTCGGAGAAGGC 59.749 55.000 0.00 0.00 45.90 4.35
4840 5270 1.118965 TGTCAGGTTCGGAGAAGGCA 61.119 55.000 0.00 0.00 45.90 4.75
4841 5271 0.670854 GTCAGGTTCGGAGAAGGCAC 60.671 60.000 0.00 0.00 45.90 5.01
4842 5272 1.376037 CAGGTTCGGAGAAGGCACC 60.376 63.158 0.00 0.00 45.90 5.01
4843 5273 1.841556 AGGTTCGGAGAAGGCACCA 60.842 57.895 0.00 0.00 45.90 4.17
4844 5274 1.376037 GGTTCGGAGAAGGCACCAG 60.376 63.158 0.00 0.00 45.90 4.00
4845 5275 1.371558 GTTCGGAGAAGGCACCAGT 59.628 57.895 0.00 0.00 45.90 4.00
4846 5276 0.670854 GTTCGGAGAAGGCACCAGTC 60.671 60.000 0.00 0.00 45.90 3.51
4847 5277 1.118965 TTCGGAGAAGGCACCAGTCA 61.119 55.000 0.00 0.00 45.90 3.41
4848 5278 1.118965 TCGGAGAAGGCACCAGTCAA 61.119 55.000 0.00 0.00 0.00 3.18
4849 5279 0.036010 CGGAGAAGGCACCAGTCAAT 60.036 55.000 0.00 0.00 0.00 2.57
4850 5280 1.611673 CGGAGAAGGCACCAGTCAATT 60.612 52.381 0.00 0.00 0.00 2.32
4851 5281 1.815003 GGAGAAGGCACCAGTCAATTG 59.185 52.381 0.00 0.00 0.00 2.32
4852 5282 1.200948 GAGAAGGCACCAGTCAATTGC 59.799 52.381 0.00 0.00 35.40 3.56
4855 5285 3.776158 GCACCAGTCAATTGCCCA 58.224 55.556 0.00 0.00 0.00 5.36
4856 5286 2.279842 GCACCAGTCAATTGCCCAT 58.720 52.632 0.00 0.00 0.00 4.00
4857 5287 0.174162 GCACCAGTCAATTGCCCATC 59.826 55.000 0.00 0.00 0.00 3.51
4858 5288 1.843368 CACCAGTCAATTGCCCATCT 58.157 50.000 0.00 0.00 0.00 2.90
4859 5289 1.475280 CACCAGTCAATTGCCCATCTG 59.525 52.381 0.00 4.41 0.00 2.90
4860 5290 0.458669 CCAGTCAATTGCCCATCTGC 59.541 55.000 0.00 0.00 0.00 4.26
4861 5291 0.099968 CAGTCAATTGCCCATCTGCG 59.900 55.000 0.00 0.00 0.00 5.18
4862 5292 1.033746 AGTCAATTGCCCATCTGCGG 61.034 55.000 0.00 0.00 0.00 5.69
4868 5298 3.512516 GCCCATCTGCGGCTCAAC 61.513 66.667 0.00 0.00 43.48 3.18
4869 5299 3.197790 CCCATCTGCGGCTCAACG 61.198 66.667 0.00 0.00 0.00 4.10
4870 5300 2.125552 CCATCTGCGGCTCAACGA 60.126 61.111 0.00 0.00 35.47 3.85
4871 5301 1.522355 CCATCTGCGGCTCAACGAT 60.522 57.895 0.00 0.00 35.47 3.73
4872 5302 1.640069 CATCTGCGGCTCAACGATG 59.360 57.895 0.00 2.48 35.47 3.84
4873 5303 1.522355 ATCTGCGGCTCAACGATGG 60.522 57.895 0.00 0.00 35.47 3.51
4874 5304 2.244117 ATCTGCGGCTCAACGATGGT 62.244 55.000 0.00 0.00 35.47 3.55
4875 5305 2.741985 TGCGGCTCAACGATGGTG 60.742 61.111 0.00 0.00 35.47 4.17
4876 5306 4.166011 GCGGCTCAACGATGGTGC 62.166 66.667 0.00 0.00 35.47 5.01
4877 5307 2.434884 CGGCTCAACGATGGTGCT 60.435 61.111 10.19 0.00 35.47 4.40
4878 5308 2.743752 CGGCTCAACGATGGTGCTG 61.744 63.158 10.19 8.21 35.47 4.41
4879 5309 2.482374 GCTCAACGATGGTGCTGC 59.518 61.111 0.00 0.00 0.00 5.25
4880 5310 2.037136 GCTCAACGATGGTGCTGCT 61.037 57.895 0.00 0.00 0.00 4.24
4881 5311 1.792301 CTCAACGATGGTGCTGCTG 59.208 57.895 0.00 0.00 0.00 4.41
4882 5312 0.952497 CTCAACGATGGTGCTGCTGT 60.952 55.000 0.00 0.00 0.00 4.40
4883 5313 0.534877 TCAACGATGGTGCTGCTGTT 60.535 50.000 0.00 0.00 0.00 3.16
4884 5314 1.155889 CAACGATGGTGCTGCTGTTA 58.844 50.000 0.00 0.00 0.00 2.41
4885 5315 1.129251 CAACGATGGTGCTGCTGTTAG 59.871 52.381 0.00 0.00 0.00 2.34
4886 5316 0.391661 ACGATGGTGCTGCTGTTAGG 60.392 55.000 0.00 0.00 0.00 2.69
4887 5317 1.091771 CGATGGTGCTGCTGTTAGGG 61.092 60.000 0.00 0.00 0.00 3.53
4888 5318 1.379044 ATGGTGCTGCTGTTAGGGC 60.379 57.895 0.00 0.00 0.00 5.19
4889 5319 2.034066 GGTGCTGCTGTTAGGGCA 59.966 61.111 0.00 0.00 38.10 5.36
4890 5320 1.379044 GGTGCTGCTGTTAGGGCAT 60.379 57.895 0.00 0.00 39.07 4.40
4891 5321 1.660560 GGTGCTGCTGTTAGGGCATG 61.661 60.000 0.00 0.00 39.07 4.06
4892 5322 0.962356 GTGCTGCTGTTAGGGCATGT 60.962 55.000 0.00 0.00 39.07 3.21
4893 5323 0.617935 TGCTGCTGTTAGGGCATGTA 59.382 50.000 0.00 0.00 39.07 2.29
4894 5324 1.017387 GCTGCTGTTAGGGCATGTAC 58.983 55.000 0.00 0.00 39.07 2.90
4895 5325 1.678728 GCTGCTGTTAGGGCATGTACA 60.679 52.381 0.00 0.00 39.07 2.90
4896 5326 2.710377 CTGCTGTTAGGGCATGTACAA 58.290 47.619 0.00 0.00 39.07 2.41
4897 5327 3.282021 CTGCTGTTAGGGCATGTACAAT 58.718 45.455 0.00 0.00 39.07 2.71
4898 5328 3.016031 TGCTGTTAGGGCATGTACAATG 58.984 45.455 0.00 0.12 34.56 2.82
4899 5329 3.278574 GCTGTTAGGGCATGTACAATGA 58.721 45.455 0.00 0.00 0.00 2.57
4900 5330 3.885297 GCTGTTAGGGCATGTACAATGAT 59.115 43.478 0.00 0.00 0.00 2.45
4901 5331 4.261322 GCTGTTAGGGCATGTACAATGATG 60.261 45.833 0.00 0.00 0.00 3.07
4902 5332 4.206375 TGTTAGGGCATGTACAATGATGG 58.794 43.478 0.00 0.00 0.00 3.51
4903 5333 1.696063 AGGGCATGTACAATGATGGC 58.304 50.000 11.25 11.25 42.82 4.40
4904 5334 1.063792 AGGGCATGTACAATGATGGCA 60.064 47.619 18.87 0.00 44.77 4.92
4905 5335 1.965643 GGGCATGTACAATGATGGCAT 59.034 47.619 18.87 0.00 44.77 4.40
4906 5336 3.156293 GGGCATGTACAATGATGGCATA 58.844 45.455 18.87 0.00 44.77 3.14
4907 5337 3.765511 GGGCATGTACAATGATGGCATAT 59.234 43.478 18.87 0.00 44.77 1.78
4908 5338 4.381185 GGGCATGTACAATGATGGCATATG 60.381 45.833 18.87 2.78 44.77 1.78
4909 5339 4.381185 GGCATGTACAATGATGGCATATGG 60.381 45.833 14.01 0.00 43.00 2.74
4910 5340 4.460034 GCATGTACAATGATGGCATATGGA 59.540 41.667 0.00 0.00 33.44 3.41
4911 5341 5.126545 GCATGTACAATGATGGCATATGGAT 59.873 40.000 0.00 0.00 33.44 3.41
4912 5342 6.319405 GCATGTACAATGATGGCATATGGATA 59.681 38.462 0.00 0.00 33.44 2.59
4913 5343 7.680350 GCATGTACAATGATGGCATATGGATAC 60.680 40.741 0.00 2.02 33.44 2.24
4914 5344 6.777782 TGTACAATGATGGCATATGGATACA 58.222 36.000 0.00 4.71 43.07 2.29
4932 5362 8.759481 TGGATACATATGCCTTATGACAAAAA 57.241 30.769 1.58 0.00 46.17 1.94
4933 5363 8.849168 TGGATACATATGCCTTATGACAAAAAG 58.151 33.333 1.58 0.00 46.17 2.27
4934 5364 8.850156 GGATACATATGCCTTATGACAAAAAGT 58.150 33.333 1.58 0.00 40.22 2.66
4942 5372 9.643693 ATGCCTTATGACAAAAAGTAATTTGAG 57.356 29.630 6.76 0.00 41.73 3.02
4943 5373 8.087750 TGCCTTATGACAAAAAGTAATTTGAGG 58.912 33.333 6.76 4.06 41.73 3.86
4944 5374 7.063426 GCCTTATGACAAAAAGTAATTTGAGGC 59.937 37.037 11.29 11.29 42.72 4.70
4945 5375 8.087750 CCTTATGACAAAAAGTAATTTGAGGCA 58.912 33.333 6.76 0.00 41.73 4.75
4946 5376 9.643693 CTTATGACAAAAAGTAATTTGAGGCAT 57.356 29.630 11.93 11.93 41.73 4.40
4948 5378 8.986477 ATGACAAAAAGTAATTTGAGGCATAC 57.014 30.769 7.03 0.00 41.73 2.39
4949 5379 7.081349 TGACAAAAAGTAATTTGAGGCATACG 58.919 34.615 6.76 0.00 41.73 3.06
4950 5380 6.977213 ACAAAAAGTAATTTGAGGCATACGT 58.023 32.000 6.76 0.00 41.73 3.57
4951 5381 6.861055 ACAAAAAGTAATTTGAGGCATACGTG 59.139 34.615 0.00 0.00 41.73 4.49
4952 5382 6.569179 AAAAGTAATTTGAGGCATACGTGT 57.431 33.333 0.00 0.00 0.00 4.49
4953 5383 6.569179 AAAGTAATTTGAGGCATACGTGTT 57.431 33.333 0.00 0.00 0.00 3.32
4954 5384 5.545658 AGTAATTTGAGGCATACGTGTTG 57.454 39.130 0.00 0.00 0.00 3.33
4955 5385 5.242434 AGTAATTTGAGGCATACGTGTTGA 58.758 37.500 0.00 0.00 0.00 3.18
4956 5386 5.880332 AGTAATTTGAGGCATACGTGTTGAT 59.120 36.000 0.00 0.00 0.00 2.57
4957 5387 5.643379 AATTTGAGGCATACGTGTTGATT 57.357 34.783 0.00 0.00 0.00 2.57
4958 5388 5.643379 ATTTGAGGCATACGTGTTGATTT 57.357 34.783 0.00 0.00 0.00 2.17
4959 5389 4.418013 TTGAGGCATACGTGTTGATTTG 57.582 40.909 0.00 0.00 0.00 2.32
4960 5390 3.407698 TGAGGCATACGTGTTGATTTGT 58.592 40.909 0.00 0.00 0.00 2.83
4961 5391 3.818210 TGAGGCATACGTGTTGATTTGTT 59.182 39.130 0.00 0.00 0.00 2.83
4962 5392 4.083537 TGAGGCATACGTGTTGATTTGTTC 60.084 41.667 0.00 0.00 0.00 3.18
4963 5393 4.072131 AGGCATACGTGTTGATTTGTTCT 58.928 39.130 0.00 0.00 0.00 3.01
4964 5394 4.154195 AGGCATACGTGTTGATTTGTTCTC 59.846 41.667 0.00 0.00 0.00 2.87
4965 5395 4.403453 GCATACGTGTTGATTTGTTCTCC 58.597 43.478 0.00 0.00 0.00 3.71
4966 5396 4.671766 GCATACGTGTTGATTTGTTCTCCC 60.672 45.833 0.00 0.00 0.00 4.30
4967 5397 2.227194 ACGTGTTGATTTGTTCTCCCC 58.773 47.619 0.00 0.00 0.00 4.81
4968 5398 2.226330 CGTGTTGATTTGTTCTCCCCA 58.774 47.619 0.00 0.00 0.00 4.96
4969 5399 2.621055 CGTGTTGATTTGTTCTCCCCAA 59.379 45.455 0.00 0.00 0.00 4.12
4970 5400 3.255642 CGTGTTGATTTGTTCTCCCCAAT 59.744 43.478 0.00 0.00 0.00 3.16
4971 5401 4.559153 GTGTTGATTTGTTCTCCCCAATG 58.441 43.478 0.00 0.00 0.00 2.82
4972 5402 3.006752 TGTTGATTTGTTCTCCCCAATGC 59.993 43.478 0.00 0.00 0.00 3.56
4973 5403 2.886913 TGATTTGTTCTCCCCAATGCA 58.113 42.857 0.00 0.00 0.00 3.96
4974 5404 3.237746 TGATTTGTTCTCCCCAATGCAA 58.762 40.909 0.00 0.00 0.00 4.08
4975 5405 3.258872 TGATTTGTTCTCCCCAATGCAAG 59.741 43.478 0.00 0.00 0.00 4.01
4976 5406 0.968405 TTGTTCTCCCCAATGCAAGC 59.032 50.000 0.00 0.00 0.00 4.01
4977 5407 0.112995 TGTTCTCCCCAATGCAAGCT 59.887 50.000 0.00 0.00 0.00 3.74
4978 5408 1.354031 TGTTCTCCCCAATGCAAGCTA 59.646 47.619 0.00 0.00 0.00 3.32
4979 5409 1.745653 GTTCTCCCCAATGCAAGCTAC 59.254 52.381 0.00 0.00 0.00 3.58
4980 5410 1.289160 TCTCCCCAATGCAAGCTACT 58.711 50.000 0.00 0.00 0.00 2.57
4981 5411 2.477245 TCTCCCCAATGCAAGCTACTA 58.523 47.619 0.00 0.00 0.00 1.82
4982 5412 2.170607 TCTCCCCAATGCAAGCTACTAC 59.829 50.000 0.00 0.00 0.00 2.73
4983 5413 2.171448 CTCCCCAATGCAAGCTACTACT 59.829 50.000 0.00 0.00 0.00 2.57
4984 5414 3.380393 TCCCCAATGCAAGCTACTACTA 58.620 45.455 0.00 0.00 0.00 1.82
4985 5415 3.388024 TCCCCAATGCAAGCTACTACTAG 59.612 47.826 0.00 0.00 0.00 2.57
4986 5416 3.134804 CCCCAATGCAAGCTACTACTAGT 59.865 47.826 0.00 0.00 0.00 2.57
4987 5417 4.122776 CCCAATGCAAGCTACTACTAGTG 58.877 47.826 5.39 0.00 0.00 2.74
4988 5418 4.122776 CCAATGCAAGCTACTACTAGTGG 58.877 47.826 5.39 4.89 0.00 4.00
4989 5419 4.141937 CCAATGCAAGCTACTACTAGTGGA 60.142 45.833 13.86 0.00 0.00 4.02
4990 5420 4.657436 ATGCAAGCTACTACTAGTGGAC 57.343 45.455 13.86 2.15 0.00 4.02
4991 5421 2.758979 TGCAAGCTACTACTAGTGGACC 59.241 50.000 13.86 0.75 0.00 4.46
4992 5422 3.025262 GCAAGCTACTACTAGTGGACCT 58.975 50.000 13.86 3.06 0.00 3.85
4993 5423 3.067040 GCAAGCTACTACTAGTGGACCTC 59.933 52.174 13.86 0.00 0.00 3.85
4994 5424 4.270834 CAAGCTACTACTAGTGGACCTCA 58.729 47.826 13.86 0.00 0.00 3.86
4995 5425 4.799715 AGCTACTACTAGTGGACCTCAT 57.200 45.455 13.86 0.00 0.00 2.90
4996 5426 4.721132 AGCTACTACTAGTGGACCTCATC 58.279 47.826 13.86 0.00 0.00 2.92
4997 5427 4.166337 AGCTACTACTAGTGGACCTCATCA 59.834 45.833 13.86 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.304829 TGGAAAATATTTAGGCCCCTGC 58.695 45.455 0.00 0.00 0.00 4.85
3 4 4.284234 CCATGGAAAATATTTAGGCCCCTG 59.716 45.833 5.56 4.67 0.00 4.45
4 5 4.492646 CCATGGAAAATATTTAGGCCCCT 58.507 43.478 5.56 0.00 0.00 4.79
5 6 3.582647 CCCATGGAAAATATTTAGGCCCC 59.417 47.826 15.22 0.00 0.00 5.80
6 7 4.488770 TCCCATGGAAAATATTTAGGCCC 58.511 43.478 15.22 2.11 0.00 5.80
7 8 4.021104 GCTCCCATGGAAAATATTTAGGCC 60.021 45.833 15.22 0.00 0.00 5.19
8 9 4.835056 AGCTCCCATGGAAAATATTTAGGC 59.165 41.667 15.22 0.00 0.00 3.93
9 10 6.983906 AAGCTCCCATGGAAAATATTTAGG 57.016 37.500 15.22 0.00 0.00 2.69
63 72 1.760029 GGTGTGGCAAAGGAAAAGGAA 59.240 47.619 0.00 0.00 0.00 3.36
64 73 1.408969 GGTGTGGCAAAGGAAAAGGA 58.591 50.000 0.00 0.00 0.00 3.36
65 74 0.031994 CGGTGTGGCAAAGGAAAAGG 59.968 55.000 0.00 0.00 0.00 3.11
66 75 0.597377 GCGGTGTGGCAAAGGAAAAG 60.597 55.000 0.00 0.00 0.00 2.27
67 76 1.323271 TGCGGTGTGGCAAAGGAAAA 61.323 50.000 0.00 0.00 40.59 2.29
68 77 1.754621 TGCGGTGTGGCAAAGGAAA 60.755 52.632 0.00 0.00 40.59 3.13
109 118 3.571590 TGGGTAATCATTATTGGTGGCC 58.428 45.455 0.00 0.00 0.00 5.36
146 155 2.562298 TGCTTGCATTTAAACCCTCCAG 59.438 45.455 0.00 0.00 0.00 3.86
249 259 1.118356 CGGAGGGGGATGGAGAAGAG 61.118 65.000 0.00 0.00 0.00 2.85
279 289 1.649815 CGAATCGAGACGGGAGGAG 59.350 63.158 0.00 0.00 0.00 3.69
347 563 3.455469 AATCCCCGTCCGTCCGTC 61.455 66.667 0.00 0.00 0.00 4.79
348 564 3.766691 CAATCCCCGTCCGTCCGT 61.767 66.667 0.00 0.00 0.00 4.69
445 663 4.875544 TCTGTTCGAGAAAACAAACAGG 57.124 40.909 12.59 0.00 45.44 4.00
502 721 3.323243 AGCAAAACAGCAGCATGAAATC 58.677 40.909 0.00 0.00 39.69 2.17
609 837 5.302568 TCTGAATGTCAAAAGAGCAAATGGT 59.697 36.000 0.00 0.00 0.00 3.55
630 859 7.144661 CACAGCTATAGAAGTACTCCAATCTG 58.855 42.308 3.21 1.34 0.00 2.90
640 869 9.419297 CTAAACACAAACACAGCTATAGAAGTA 57.581 33.333 3.21 0.00 0.00 2.24
645 874 7.891183 ACTCTAAACACAAACACAGCTATAG 57.109 36.000 0.00 0.00 0.00 1.31
761 990 1.541588 ACGCCTTCAATTTCAGCCTTC 59.458 47.619 0.00 0.00 0.00 3.46
980 1211 1.655484 TGCAGGTGCTCAATATGTCG 58.345 50.000 3.18 0.00 42.66 4.35
1056 1287 1.153429 CGGTGAGGGGTCGAATTCC 60.153 63.158 0.00 0.00 0.00 3.01
1371 1602 4.644685 TGTCGTCTATCAATCACATCTCCA 59.355 41.667 0.00 0.00 0.00 3.86
1374 1605 6.481313 CCATTTGTCGTCTATCAATCACATCT 59.519 38.462 0.00 0.00 0.00 2.90
1603 1834 1.445942 CCTGGTGTGGTCGAACTGT 59.554 57.895 0.33 0.00 0.00 3.55
1689 1920 1.959985 CGAGACTGATATGGCCACTCT 59.040 52.381 8.16 0.56 0.00 3.24
1707 1938 5.462530 TCAGGATTTCTACTGTTTCACGA 57.537 39.130 0.00 0.00 36.17 4.35
2085 2319 4.624336 TTTACAACGTCAACATGCAGTT 57.376 36.364 0.00 0.00 42.42 3.16
2179 2413 9.450807 GATTCTAGCATTTAAAACATTACGCAT 57.549 29.630 0.00 0.00 0.00 4.73
2335 2569 6.541641 TGCACCAAAAACAAATTCAAAGCTAT 59.458 30.769 0.00 0.00 0.00 2.97
2533 2767 2.040544 CATCCCCACACAAGTCGGC 61.041 63.158 0.00 0.00 0.00 5.54
2901 3231 1.277557 AGAACTCCTGATGGCAGACAC 59.722 52.381 0.00 0.00 45.17 3.67
3059 3391 4.949856 ACTTGGTTCAGTGACAGATGTTTT 59.050 37.500 0.00 0.00 0.00 2.43
3204 3536 7.068226 GCCAATTTATACTTAGTCCCAACATGT 59.932 37.037 0.00 0.00 0.00 3.21
3216 3548 7.107639 GCCTTCCAAAGCCAATTTATACTTA 57.892 36.000 0.00 0.00 0.00 2.24
3297 3629 2.785679 CCAATTGGAAATCGACGAAGC 58.214 47.619 20.50 0.00 37.39 3.86
3318 3650 6.881017 GCTGTTAAAAGCAAATCCAGAAAAG 58.119 36.000 13.00 0.00 43.01 2.27
3437 3769 8.469200 TCTGCCTAGGTATTTGAAATTTTGATG 58.531 33.333 11.31 0.00 0.00 3.07
3638 3976 6.016360 CCCAACAGATTGTATGTTCACAAAGA 60.016 38.462 0.00 0.00 41.50 2.52
3649 3987 2.357154 GGCTCACCCCAACAGATTGTAT 60.357 50.000 0.00 0.00 33.60 2.29
3668 4007 8.121305 TGGATATTCATATGGTTACATTTGGC 57.879 34.615 2.13 0.00 36.88 4.52
3706 4045 8.494433 AGTTCCTTTAGATCATTGTATTGGCTA 58.506 33.333 0.00 0.00 0.00 3.93
4316 4740 9.634021 AGAGAGTGTATATCTATCTGTCAACAA 57.366 33.333 4.88 0.00 33.15 2.83
4388 4818 0.601311 GACAGGGACAGCACACACTC 60.601 60.000 0.00 0.00 0.00 3.51
4397 4827 1.669115 CAAGCACGGACAGGGACAG 60.669 63.158 0.00 0.00 0.00 3.51
4398 4828 2.425592 CAAGCACGGACAGGGACA 59.574 61.111 0.00 0.00 0.00 4.02
4399 4829 2.358737 CCAAGCACGGACAGGGAC 60.359 66.667 0.00 0.00 0.00 4.46
4400 4830 4.329545 GCCAAGCACGGACAGGGA 62.330 66.667 0.00 0.00 0.00 4.20
4401 4831 3.850098 AAGCCAAGCACGGACAGGG 62.850 63.158 0.00 0.00 0.00 4.45
4402 4832 2.281761 AAGCCAAGCACGGACAGG 60.282 61.111 0.00 0.00 0.00 4.00
4455 4885 3.255642 CCGTCAAACCCAATCAAGAACAT 59.744 43.478 0.00 0.00 0.00 2.71
4456 4886 2.621055 CCGTCAAACCCAATCAAGAACA 59.379 45.455 0.00 0.00 0.00 3.18
4457 4887 2.030274 CCCGTCAAACCCAATCAAGAAC 60.030 50.000 0.00 0.00 0.00 3.01
4459 4889 1.144093 ACCCGTCAAACCCAATCAAGA 59.856 47.619 0.00 0.00 0.00 3.02
4462 4892 1.683917 CAAACCCGTCAAACCCAATCA 59.316 47.619 0.00 0.00 0.00 2.57
4463 4893 1.000394 CCAAACCCGTCAAACCCAATC 60.000 52.381 0.00 0.00 0.00 2.67
4464 4894 1.044611 CCAAACCCGTCAAACCCAAT 58.955 50.000 0.00 0.00 0.00 3.16
4465 4895 1.677637 GCCAAACCCGTCAAACCCAA 61.678 55.000 0.00 0.00 0.00 4.12
4467 4897 2.732016 GCCAAACCCGTCAAACCC 59.268 61.111 0.00 0.00 0.00 4.11
4468 4898 1.468506 ATGGCCAAACCCGTCAAACC 61.469 55.000 10.96 0.00 37.83 3.27
4471 4901 0.110678 TGTATGGCCAAACCCGTCAA 59.889 50.000 10.96 0.00 37.83 3.18
4473 4903 1.310216 GGTGTATGGCCAAACCCGTC 61.310 60.000 20.01 4.68 37.83 4.79
4474 4904 1.303806 GGTGTATGGCCAAACCCGT 60.304 57.895 20.01 2.10 37.83 5.28
4475 4905 0.610785 AAGGTGTATGGCCAAACCCG 60.611 55.000 24.64 0.00 37.83 5.28
4477 4907 3.361786 ACATAAGGTGTATGGCCAAACC 58.638 45.455 22.14 22.14 39.91 3.27
4518 4948 2.623878 TGCCCTAGAGACTAGACGAG 57.376 55.000 0.00 0.00 0.00 4.18
4519 4949 2.172930 ACATGCCCTAGAGACTAGACGA 59.827 50.000 0.00 0.00 0.00 4.20
4521 4951 6.466885 TTTTACATGCCCTAGAGACTAGAC 57.533 41.667 0.00 0.00 0.00 2.59
4522 4952 6.042093 CCATTTTACATGCCCTAGAGACTAGA 59.958 42.308 0.00 0.00 0.00 2.43
4523 4953 6.183361 ACCATTTTACATGCCCTAGAGACTAG 60.183 42.308 0.00 0.00 0.00 2.57
4524 4954 5.665812 ACCATTTTACATGCCCTAGAGACTA 59.334 40.000 0.00 0.00 0.00 2.59
4525 4955 4.475016 ACCATTTTACATGCCCTAGAGACT 59.525 41.667 0.00 0.00 0.00 3.24
4526 4956 4.781934 ACCATTTTACATGCCCTAGAGAC 58.218 43.478 0.00 0.00 0.00 3.36
4527 4957 5.191722 AGAACCATTTTACATGCCCTAGAGA 59.808 40.000 0.00 0.00 0.00 3.10
4532 4962 7.494922 AAAATAGAACCATTTTACATGCCCT 57.505 32.000 0.00 0.00 36.56 5.19
4533 4963 9.313118 CTTAAAATAGAACCATTTTACATGCCC 57.687 33.333 0.00 0.00 39.10 5.36
4542 4972 9.840427 CGTGACATTCTTAAAATAGAACCATTT 57.160 29.630 0.00 0.00 37.00 2.32
4543 4973 9.010029 ACGTGACATTCTTAAAATAGAACCATT 57.990 29.630 0.00 0.00 37.00 3.16
4544 4974 8.561738 ACGTGACATTCTTAAAATAGAACCAT 57.438 30.769 0.00 0.00 37.00 3.55
4545 4975 7.972832 ACGTGACATTCTTAAAATAGAACCA 57.027 32.000 0.00 0.00 37.00 3.67
4546 4976 8.601476 CCTACGTGACATTCTTAAAATAGAACC 58.399 37.037 0.00 0.00 37.00 3.62
4547 4977 9.362539 TCCTACGTGACATTCTTAAAATAGAAC 57.637 33.333 0.00 0.00 37.00 3.01
4554 4984 9.878667 TCATTTATCCTACGTGACATTCTTAAA 57.121 29.630 0.00 0.00 0.00 1.52
4556 4986 9.476202 CATCATTTATCCTACGTGACATTCTTA 57.524 33.333 0.00 0.00 0.00 2.10
4557 4987 8.204160 TCATCATTTATCCTACGTGACATTCTT 58.796 33.333 0.00 0.00 0.00 2.52
4558 4988 7.726216 TCATCATTTATCCTACGTGACATTCT 58.274 34.615 0.00 0.00 0.00 2.40
4559 4989 7.867909 TCTCATCATTTATCCTACGTGACATTC 59.132 37.037 0.00 0.00 0.00 2.67
4560 4990 7.726216 TCTCATCATTTATCCTACGTGACATT 58.274 34.615 0.00 0.00 0.00 2.71
4561 4991 7.290110 TCTCATCATTTATCCTACGTGACAT 57.710 36.000 0.00 0.00 0.00 3.06
4562 4992 6.709018 TCTCATCATTTATCCTACGTGACA 57.291 37.500 0.00 0.00 0.00 3.58
4563 4993 7.371159 TCATCTCATCATTTATCCTACGTGAC 58.629 38.462 0.00 0.00 0.00 3.67
4564 4994 7.524717 TCATCTCATCATTTATCCTACGTGA 57.475 36.000 0.00 0.00 0.00 4.35
4565 4995 8.249638 AGATCATCTCATCATTTATCCTACGTG 58.750 37.037 0.00 0.00 0.00 4.49
4566 4996 8.359875 AGATCATCTCATCATTTATCCTACGT 57.640 34.615 0.00 0.00 0.00 3.57
4567 4997 8.685427 AGAGATCATCTCATCATTTATCCTACG 58.315 37.037 17.27 0.00 45.73 3.51
4571 5001 9.316730 GCTAAGAGATCATCTCATCATTTATCC 57.683 37.037 17.27 0.00 45.73 2.59
4572 5002 9.872721 TGCTAAGAGATCATCTCATCATTTATC 57.127 33.333 17.27 3.09 45.73 1.75
4573 5003 9.656040 GTGCTAAGAGATCATCTCATCATTTAT 57.344 33.333 17.27 0.00 45.73 1.40
4574 5004 8.645110 TGTGCTAAGAGATCATCTCATCATTTA 58.355 33.333 17.27 5.45 45.73 1.40
4575 5005 7.506971 TGTGCTAAGAGATCATCTCATCATTT 58.493 34.615 17.27 4.54 45.73 2.32
4576 5006 7.063934 TGTGCTAAGAGATCATCTCATCATT 57.936 36.000 17.27 4.90 45.73 2.57
4577 5007 6.667558 TGTGCTAAGAGATCATCTCATCAT 57.332 37.500 17.27 2.87 45.73 2.45
4578 5008 6.475596 TTGTGCTAAGAGATCATCTCATCA 57.524 37.500 17.27 5.86 45.73 3.07
4579 5009 9.089601 CATATTGTGCTAAGAGATCATCTCATC 57.910 37.037 17.27 3.41 45.73 2.92
4580 5010 8.595421 ACATATTGTGCTAAGAGATCATCTCAT 58.405 33.333 17.27 7.56 45.73 2.90
4581 5011 7.960262 ACATATTGTGCTAAGAGATCATCTCA 58.040 34.615 17.27 0.00 45.73 3.27
4582 5012 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
4583 5013 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
4584 5014 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
4585 5015 7.960262 TGAGACATATTGTGCTAAGAGATCAT 58.040 34.615 0.00 0.00 0.00 2.45
4586 5016 7.352079 TGAGACATATTGTGCTAAGAGATCA 57.648 36.000 0.00 0.00 0.00 2.92
4587 5017 8.087136 TGATGAGACATATTGTGCTAAGAGATC 58.913 37.037 0.00 0.00 0.00 2.75
4588 5018 7.960262 TGATGAGACATATTGTGCTAAGAGAT 58.040 34.615 0.00 0.00 0.00 2.75
4589 5019 7.352079 TGATGAGACATATTGTGCTAAGAGA 57.648 36.000 0.00 0.00 0.00 3.10
4590 5020 7.656542 ACATGATGAGACATATTGTGCTAAGAG 59.343 37.037 0.00 0.00 0.00 2.85
4591 5021 7.503549 ACATGATGAGACATATTGTGCTAAGA 58.496 34.615 0.00 0.00 0.00 2.10
4592 5022 7.725818 ACATGATGAGACATATTGTGCTAAG 57.274 36.000 0.00 0.00 0.00 2.18
4593 5023 8.510243 AAACATGATGAGACATATTGTGCTAA 57.490 30.769 0.00 0.00 0.00 3.09
4594 5024 8.510243 AAAACATGATGAGACATATTGTGCTA 57.490 30.769 0.00 0.00 0.00 3.49
4595 5025 7.400599 AAAACATGATGAGACATATTGTGCT 57.599 32.000 0.00 0.00 0.00 4.40
4596 5026 9.571810 TTAAAAACATGATGAGACATATTGTGC 57.428 29.630 0.00 0.00 0.00 4.57
4648 5078 9.685276 ACATGTTTACAATGGATCATCTCTTAA 57.315 29.630 0.00 0.00 0.00 1.85
4649 5079 9.685276 AACATGTTTACAATGGATCATCTCTTA 57.315 29.630 4.92 0.00 0.00 2.10
4650 5080 8.585471 AACATGTTTACAATGGATCATCTCTT 57.415 30.769 4.92 0.00 0.00 2.85
4651 5081 8.585471 AAACATGTTTACAATGGATCATCTCT 57.415 30.769 22.10 0.00 0.00 3.10
4652 5082 9.643693 AAAAACATGTTTACAATGGATCATCTC 57.356 29.630 23.53 0.00 31.63 2.75
4724 5154 9.219603 GCAGTTAAGAGCATATATAATGGTTGA 57.780 33.333 0.00 0.00 0.00 3.18
4725 5155 8.454106 GGCAGTTAAGAGCATATATAATGGTTG 58.546 37.037 1.96 0.00 0.00 3.77
4726 5156 8.386264 AGGCAGTTAAGAGCATATATAATGGTT 58.614 33.333 1.96 0.00 0.00 3.67
4727 5157 7.922382 AGGCAGTTAAGAGCATATATAATGGT 58.078 34.615 1.96 0.00 0.00 3.55
4728 5158 8.798859 AAGGCAGTTAAGAGCATATATAATGG 57.201 34.615 1.96 0.00 0.00 3.16
4730 5160 8.734386 GCAAAGGCAGTTAAGAGCATATATAAT 58.266 33.333 1.96 0.00 40.72 1.28
4731 5161 8.099364 GCAAAGGCAGTTAAGAGCATATATAA 57.901 34.615 1.96 0.00 40.72 0.98
4732 5162 7.672983 GCAAAGGCAGTTAAGAGCATATATA 57.327 36.000 1.96 0.00 40.72 0.86
4733 5163 6.566197 GCAAAGGCAGTTAAGAGCATATAT 57.434 37.500 1.96 0.00 40.72 0.86
4735 5165 4.907879 GCAAAGGCAGTTAAGAGCATAT 57.092 40.909 1.96 0.00 40.72 1.78
4788 5218 2.195567 ACAACGCTGCAGTGCCAAT 61.196 52.632 26.78 8.33 0.00 3.16
4804 5234 4.074259 CTGACATCCAAAGGTGAATCACA 58.926 43.478 15.86 0.00 35.86 3.58
4814 5244 2.028112 TCTCCGAACCTGACATCCAAAG 60.028 50.000 0.00 0.00 0.00 2.77
4824 5254 1.376037 GGTGCCTTCTCCGAACCTG 60.376 63.158 0.00 0.00 0.00 4.00
4825 5255 1.831652 CTGGTGCCTTCTCCGAACCT 61.832 60.000 0.00 0.00 0.00 3.50
4826 5256 1.376037 CTGGTGCCTTCTCCGAACC 60.376 63.158 0.00 0.00 0.00 3.62
4828 5258 1.118965 TGACTGGTGCCTTCTCCGAA 61.119 55.000 0.00 0.00 0.00 4.30
4829 5259 1.118965 TTGACTGGTGCCTTCTCCGA 61.119 55.000 0.00 0.00 0.00 4.55
4830 5260 0.036010 ATTGACTGGTGCCTTCTCCG 60.036 55.000 0.00 0.00 0.00 4.63
4831 5261 1.815003 CAATTGACTGGTGCCTTCTCC 59.185 52.381 0.00 0.00 0.00 3.71
4832 5262 1.200948 GCAATTGACTGGTGCCTTCTC 59.799 52.381 10.34 0.00 31.94 2.87
4833 5263 1.251251 GCAATTGACTGGTGCCTTCT 58.749 50.000 10.34 0.00 31.94 2.85
4834 5264 3.800628 GCAATTGACTGGTGCCTTC 57.199 52.632 10.34 0.00 31.94 3.46
4838 5268 0.174162 GATGGGCAATTGACTGGTGC 59.826 55.000 11.97 0.00 37.55 5.01
4839 5269 1.475280 CAGATGGGCAATTGACTGGTG 59.525 52.381 11.97 0.24 0.00 4.17
4840 5270 1.843368 CAGATGGGCAATTGACTGGT 58.157 50.000 11.97 0.00 0.00 4.00
4841 5271 0.458669 GCAGATGGGCAATTGACTGG 59.541 55.000 11.97 0.00 0.00 4.00
4842 5272 0.099968 CGCAGATGGGCAATTGACTG 59.900 55.000 11.97 10.94 0.00 3.51
4843 5273 1.033746 CCGCAGATGGGCAATTGACT 61.034 55.000 11.97 0.00 0.00 3.41
4844 5274 1.434696 CCGCAGATGGGCAATTGAC 59.565 57.895 10.34 6.06 0.00 3.18
4845 5275 3.923013 CCGCAGATGGGCAATTGA 58.077 55.556 10.34 0.00 0.00 2.57
4852 5282 2.930385 ATCGTTGAGCCGCAGATGGG 62.930 60.000 0.00 0.00 0.00 4.00
4853 5283 1.522355 ATCGTTGAGCCGCAGATGG 60.522 57.895 0.00 0.00 0.00 3.51
4854 5284 1.640069 CATCGTTGAGCCGCAGATG 59.360 57.895 0.00 0.00 33.76 2.90
4855 5285 1.522355 CCATCGTTGAGCCGCAGAT 60.522 57.895 0.00 0.00 0.00 2.90
4856 5286 2.125552 CCATCGTTGAGCCGCAGA 60.126 61.111 0.00 0.00 0.00 4.26
4857 5287 2.434884 ACCATCGTTGAGCCGCAG 60.435 61.111 0.00 0.00 0.00 5.18
4858 5288 2.741985 CACCATCGTTGAGCCGCA 60.742 61.111 0.00 0.00 0.00 5.69
4859 5289 4.166011 GCACCATCGTTGAGCCGC 62.166 66.667 0.00 0.00 0.00 6.53
4860 5290 2.434884 AGCACCATCGTTGAGCCG 60.435 61.111 0.00 0.00 0.00 5.52
4861 5291 3.044059 GCAGCACCATCGTTGAGCC 62.044 63.158 0.00 0.00 0.00 4.70
4862 5292 2.037136 AGCAGCACCATCGTTGAGC 61.037 57.895 0.00 0.00 0.00 4.26
4863 5293 0.952497 ACAGCAGCACCATCGTTGAG 60.952 55.000 0.00 0.00 0.00 3.02
4864 5294 0.534877 AACAGCAGCACCATCGTTGA 60.535 50.000 0.00 0.00 0.00 3.18
4865 5295 1.129251 CTAACAGCAGCACCATCGTTG 59.871 52.381 0.00 0.00 0.00 4.10
4866 5296 1.442769 CTAACAGCAGCACCATCGTT 58.557 50.000 0.00 0.00 0.00 3.85
4867 5297 0.391661 CCTAACAGCAGCACCATCGT 60.392 55.000 0.00 0.00 0.00 3.73
4868 5298 1.091771 CCCTAACAGCAGCACCATCG 61.092 60.000 0.00 0.00 0.00 3.84
4869 5299 1.379642 GCCCTAACAGCAGCACCATC 61.380 60.000 0.00 0.00 0.00 3.51
4870 5300 1.379044 GCCCTAACAGCAGCACCAT 60.379 57.895 0.00 0.00 0.00 3.55
4871 5301 2.034066 GCCCTAACAGCAGCACCA 59.966 61.111 0.00 0.00 0.00 4.17
4872 5302 1.379044 ATGCCCTAACAGCAGCACC 60.379 57.895 0.00 0.00 44.90 5.01
4873 5303 0.962356 ACATGCCCTAACAGCAGCAC 60.962 55.000 0.00 0.00 44.90 4.40
4874 5304 0.617935 TACATGCCCTAACAGCAGCA 59.382 50.000 0.00 0.00 44.90 4.41
4875 5305 1.017387 GTACATGCCCTAACAGCAGC 58.983 55.000 0.00 0.00 44.90 5.25
4876 5306 2.401583 TGTACATGCCCTAACAGCAG 57.598 50.000 0.00 0.00 44.90 4.24
4877 5307 2.869101 TTGTACATGCCCTAACAGCA 57.131 45.000 0.00 0.00 45.94 4.41
4878 5308 3.278574 TCATTGTACATGCCCTAACAGC 58.721 45.455 0.00 0.00 0.00 4.40
4879 5309 4.276678 CCATCATTGTACATGCCCTAACAG 59.723 45.833 0.00 0.00 0.00 3.16
4880 5310 4.206375 CCATCATTGTACATGCCCTAACA 58.794 43.478 0.00 0.00 0.00 2.41
4881 5311 3.004734 GCCATCATTGTACATGCCCTAAC 59.995 47.826 0.00 0.00 0.00 2.34
4882 5312 3.221771 GCCATCATTGTACATGCCCTAA 58.778 45.455 0.00 0.00 0.00 2.69
4883 5313 2.174424 TGCCATCATTGTACATGCCCTA 59.826 45.455 0.00 0.00 0.00 3.53
4884 5314 1.063792 TGCCATCATTGTACATGCCCT 60.064 47.619 0.00 0.00 0.00 5.19
4885 5315 1.401761 TGCCATCATTGTACATGCCC 58.598 50.000 0.00 0.00 0.00 5.36
4886 5316 4.381185 CCATATGCCATCATTGTACATGCC 60.381 45.833 0.00 0.00 34.22 4.40
4887 5317 4.460034 TCCATATGCCATCATTGTACATGC 59.540 41.667 0.00 0.00 34.22 4.06
4888 5318 6.769134 ATCCATATGCCATCATTGTACATG 57.231 37.500 0.00 0.00 34.22 3.21
4889 5319 7.404481 TGTATCCATATGCCATCATTGTACAT 58.596 34.615 0.00 0.00 34.22 2.29
4890 5320 6.777782 TGTATCCATATGCCATCATTGTACA 58.222 36.000 0.00 0.00 34.22 2.90
4891 5321 7.870509 ATGTATCCATATGCCATCATTGTAC 57.129 36.000 0.00 0.00 34.22 2.90
4906 5336 8.938801 TTTTGTCATAAGGCATATGTATCCAT 57.061 30.769 9.33 0.00 41.83 3.41
4907 5337 8.759481 TTTTTGTCATAAGGCATATGTATCCA 57.241 30.769 9.33 1.27 41.83 3.41
4908 5338 8.850156 ACTTTTTGTCATAAGGCATATGTATCC 58.150 33.333 9.33 0.00 41.83 2.59
4916 5346 9.643693 CTCAAATTACTTTTTGTCATAAGGCAT 57.356 29.630 0.00 0.00 37.73 4.40
4917 5347 8.087750 CCTCAAATTACTTTTTGTCATAAGGCA 58.912 33.333 0.00 0.00 37.73 4.75
4918 5348 7.063426 GCCTCAAATTACTTTTTGTCATAAGGC 59.937 37.037 9.43 9.43 37.73 4.35
4919 5349 8.087750 TGCCTCAAATTACTTTTTGTCATAAGG 58.912 33.333 0.00 0.00 37.73 2.69
4920 5350 9.643693 ATGCCTCAAATTACTTTTTGTCATAAG 57.356 29.630 0.00 0.00 37.73 1.73
4923 5353 7.754924 CGTATGCCTCAAATTACTTTTTGTCAT 59.245 33.333 0.00 0.00 37.73 3.06
4924 5354 7.081349 CGTATGCCTCAAATTACTTTTTGTCA 58.919 34.615 0.00 0.00 37.73 3.58
4925 5355 7.060633 CACGTATGCCTCAAATTACTTTTTGTC 59.939 37.037 0.00 0.00 37.73 3.18
4926 5356 6.861055 CACGTATGCCTCAAATTACTTTTTGT 59.139 34.615 0.00 0.00 37.73 2.83
4927 5357 6.861055 ACACGTATGCCTCAAATTACTTTTTG 59.139 34.615 0.00 0.00 37.83 2.44
4928 5358 6.977213 ACACGTATGCCTCAAATTACTTTTT 58.023 32.000 0.00 0.00 0.00 1.94
4929 5359 6.569179 ACACGTATGCCTCAAATTACTTTT 57.431 33.333 0.00 0.00 0.00 2.27
4930 5360 6.205853 TCAACACGTATGCCTCAAATTACTTT 59.794 34.615 0.00 0.00 0.00 2.66
4931 5361 5.703592 TCAACACGTATGCCTCAAATTACTT 59.296 36.000 0.00 0.00 0.00 2.24
4932 5362 5.242434 TCAACACGTATGCCTCAAATTACT 58.758 37.500 0.00 0.00 0.00 2.24
4933 5363 5.539582 TCAACACGTATGCCTCAAATTAC 57.460 39.130 0.00 0.00 0.00 1.89
4934 5364 6.751514 AATCAACACGTATGCCTCAAATTA 57.248 33.333 0.00 0.00 0.00 1.40
4935 5365 5.643379 AATCAACACGTATGCCTCAAATT 57.357 34.783 0.00 0.00 0.00 1.82
4936 5366 5.048083 ACAAATCAACACGTATGCCTCAAAT 60.048 36.000 0.00 0.00 0.00 2.32
4937 5367 4.277174 ACAAATCAACACGTATGCCTCAAA 59.723 37.500 0.00 0.00 0.00 2.69
4938 5368 3.818210 ACAAATCAACACGTATGCCTCAA 59.182 39.130 0.00 0.00 0.00 3.02
4939 5369 3.407698 ACAAATCAACACGTATGCCTCA 58.592 40.909 0.00 0.00 0.00 3.86
4940 5370 4.154195 AGAACAAATCAACACGTATGCCTC 59.846 41.667 0.00 0.00 0.00 4.70
4941 5371 4.072131 AGAACAAATCAACACGTATGCCT 58.928 39.130 0.00 0.00 0.00 4.75
4942 5372 4.403453 GAGAACAAATCAACACGTATGCC 58.597 43.478 0.00 0.00 0.00 4.40
4943 5373 4.403453 GGAGAACAAATCAACACGTATGC 58.597 43.478 0.00 0.00 0.00 3.14
4944 5374 4.142687 GGGGAGAACAAATCAACACGTATG 60.143 45.833 0.00 0.00 0.00 2.39
4945 5375 4.007659 GGGGAGAACAAATCAACACGTAT 58.992 43.478 0.00 0.00 0.00 3.06
4946 5376 3.181453 TGGGGAGAACAAATCAACACGTA 60.181 43.478 0.00 0.00 0.00 3.57
4947 5377 2.227194 GGGGAGAACAAATCAACACGT 58.773 47.619 0.00 0.00 0.00 4.49
4948 5378 2.226330 TGGGGAGAACAAATCAACACG 58.774 47.619 0.00 0.00 0.00 4.49
4949 5379 4.559153 CATTGGGGAGAACAAATCAACAC 58.441 43.478 0.00 0.00 0.00 3.32
4950 5380 3.006752 GCATTGGGGAGAACAAATCAACA 59.993 43.478 0.00 0.00 0.00 3.33
4951 5381 3.006752 TGCATTGGGGAGAACAAATCAAC 59.993 43.478 0.00 0.00 0.00 3.18
4952 5382 3.237746 TGCATTGGGGAGAACAAATCAA 58.762 40.909 0.00 0.00 0.00 2.57
4953 5383 2.886913 TGCATTGGGGAGAACAAATCA 58.113 42.857 0.00 0.00 0.00 2.57
4954 5384 3.853475 CTTGCATTGGGGAGAACAAATC 58.147 45.455 0.00 0.00 0.00 2.17
4955 5385 2.027837 GCTTGCATTGGGGAGAACAAAT 60.028 45.455 0.00 0.00 0.00 2.32
4956 5386 1.344114 GCTTGCATTGGGGAGAACAAA 59.656 47.619 0.00 0.00 0.00 2.83
4957 5387 0.968405 GCTTGCATTGGGGAGAACAA 59.032 50.000 0.00 0.00 0.00 2.83
4958 5388 0.112995 AGCTTGCATTGGGGAGAACA 59.887 50.000 0.00 0.00 0.00 3.18
4959 5389 1.745653 GTAGCTTGCATTGGGGAGAAC 59.254 52.381 0.00 0.00 0.00 3.01
4960 5390 1.635487 AGTAGCTTGCATTGGGGAGAA 59.365 47.619 0.00 0.00 0.00 2.87
4961 5391 1.289160 AGTAGCTTGCATTGGGGAGA 58.711 50.000 0.00 0.00 0.00 3.71
4962 5392 2.171448 AGTAGTAGCTTGCATTGGGGAG 59.829 50.000 0.00 0.00 0.00 4.30
4963 5393 2.196595 AGTAGTAGCTTGCATTGGGGA 58.803 47.619 0.00 0.00 0.00 4.81
4964 5394 2.717639 AGTAGTAGCTTGCATTGGGG 57.282 50.000 0.00 0.00 0.00 4.96
4965 5395 4.122776 CACTAGTAGTAGCTTGCATTGGG 58.877 47.826 1.57 0.00 0.00 4.12
4966 5396 4.122776 CCACTAGTAGTAGCTTGCATTGG 58.877 47.826 1.57 0.00 0.00 3.16
4967 5397 4.806247 GTCCACTAGTAGTAGCTTGCATTG 59.194 45.833 1.57 0.00 0.00 2.82
4968 5398 4.141914 GGTCCACTAGTAGTAGCTTGCATT 60.142 45.833 1.57 0.00 0.00 3.56
4969 5399 3.385111 GGTCCACTAGTAGTAGCTTGCAT 59.615 47.826 1.57 0.00 0.00 3.96
4970 5400 2.758979 GGTCCACTAGTAGTAGCTTGCA 59.241 50.000 1.57 0.00 0.00 4.08
4971 5401 3.025262 AGGTCCACTAGTAGTAGCTTGC 58.975 50.000 1.57 0.00 0.00 4.01
4972 5402 4.270834 TGAGGTCCACTAGTAGTAGCTTG 58.729 47.826 1.57 0.00 0.00 4.01
4973 5403 4.587976 TGAGGTCCACTAGTAGTAGCTT 57.412 45.455 1.57 0.00 0.00 3.74
4974 5404 4.166337 TGATGAGGTCCACTAGTAGTAGCT 59.834 45.833 1.57 3.45 0.00 3.32
4975 5405 4.462133 TGATGAGGTCCACTAGTAGTAGC 58.538 47.826 1.57 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.