Multiple sequence alignment - TraesCS3A01G267900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G267900 chr3A 100.000 3126 0 0 1 3126 493711114 493714239 0.000000e+00 5773.0
1 TraesCS3A01G267900 chr3A 76.752 314 57 12 2821 3126 655991687 655991382 8.970000e-36 161.0
2 TraesCS3A01G267900 chr3D 90.630 2764 145 48 1 2701 372313345 372316057 0.000000e+00 3565.0
3 TraesCS3A01G267900 chr3B 89.591 2738 176 52 1 2697 486376942 486379611 0.000000e+00 3376.0
4 TraesCS3A01G267900 chr3B 93.519 108 7 0 1345 1452 394102423 394102530 8.970000e-36 161.0
5 TraesCS3A01G267900 chr3B 91.111 45 1 2 2777 2818 486380048 486380092 1.210000e-04 58.4
6 TraesCS3A01G267900 chr2D 89.902 307 20 5 2824 3124 448224784 448224483 4.890000e-103 385.0
7 TraesCS3A01G267900 chr2D 88.026 309 29 3 2824 3126 383167606 383167300 2.960000e-95 359.0
8 TraesCS3A01G267900 chr2D 77.741 301 53 11 2828 3119 531630041 531629746 4.140000e-39 172.0
9 TraesCS3A01G267900 chr2D 78.030 264 47 10 2864 3120 623503452 623503193 4.170000e-34 156.0
10 TraesCS3A01G267900 chr1B 87.055 309 32 4 2824 3126 24772265 24771959 2.990000e-90 342.0
11 TraesCS3A01G267900 chr1B 90.476 105 8 1 1123 1225 638930762 638930866 1.510000e-28 137.0
12 TraesCS3A01G267900 chr7B 82.971 276 41 6 966 1239 451656605 451656334 8.660000e-61 244.0
13 TraesCS3A01G267900 chr7B 80.800 250 37 10 1894 2139 451655874 451655632 5.320000e-43 185.0
14 TraesCS3A01G267900 chr7D 81.884 276 45 5 966 1239 434912262 434911990 8.720000e-56 228.0
15 TraesCS3A01G267900 chr7D 78.682 258 40 12 1894 2139 434911525 434911271 1.160000e-34 158.0
16 TraesCS3A01G267900 chr7D 89.655 116 10 2 1343 1457 521557263 521557149 2.510000e-31 147.0
17 TraesCS3A01G267900 chr7A 81.362 279 42 8 966 1239 485200580 485200307 5.250000e-53 219.0
18 TraesCS3A01G267900 chr7A 79.918 244 40 7 1894 2130 485199800 485199559 1.490000e-38 171.0
19 TraesCS3A01G267900 chr7A 78.486 251 40 11 2821 3062 440358882 440358637 5.400000e-33 152.0
20 TraesCS3A01G267900 chr7A 77.542 236 45 3 2891 3120 427519645 427519412 5.440000e-28 135.0
21 TraesCS3A01G267900 chr5A 78.073 301 52 10 2828 3119 122127613 122127908 8.910000e-41 178.0
22 TraesCS3A01G267900 chr1D 78.707 263 48 3 2864 3120 294747929 294748189 5.360000e-38 169.0
23 TraesCS3A01G267900 chr1D 92.632 95 7 0 1131 1225 463496711 463496617 1.510000e-28 137.0
24 TraesCS3A01G267900 chr4A 77.739 283 55 5 2828 3104 722378282 722378562 1.930000e-37 167.0
25 TraesCS3A01G267900 chr5B 92.857 112 8 0 1346 1457 38365241 38365130 2.490000e-36 163.0
26 TraesCS3A01G267900 chr5B 93.519 108 7 0 1350 1457 691166914 691167021 8.970000e-36 161.0
27 TraesCS3A01G267900 chr5D 92.593 108 8 0 1350 1457 547545548 547545655 4.170000e-34 156.0
28 TraesCS3A01G267900 chr4B 91.892 111 9 0 1347 1457 254413365 254413255 4.170000e-34 156.0
29 TraesCS3A01G267900 chr4B 76.144 306 62 8 2828 3126 591233898 591233597 1.940000e-32 150.0
30 TraesCS3A01G267900 chr6D 76.375 309 58 12 2821 3120 286783067 286782765 5.400000e-33 152.0
31 TraesCS3A01G267900 chr4D 90.991 111 10 0 1347 1457 400680566 400680676 1.940000e-32 150.0
32 TraesCS3A01G267900 chr6A 77.647 255 45 8 2826 3072 547306645 547306395 9.040000e-31 145.0
33 TraesCS3A01G267900 chr1A 95.652 46 2 0 1010 1055 555636189 555636234 1.200000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G267900 chr3A 493711114 493714239 3125 False 5773.0 5773 100.0000 1 3126 1 chr3A.!!$F1 3125
1 TraesCS3A01G267900 chr3D 372313345 372316057 2712 False 3565.0 3565 90.6300 1 2701 1 chr3D.!!$F1 2700
2 TraesCS3A01G267900 chr3B 486376942 486380092 3150 False 1717.2 3376 90.3510 1 2818 2 chr3B.!!$F2 2817
3 TraesCS3A01G267900 chr7B 451655632 451656605 973 True 214.5 244 81.8855 966 2139 2 chr7B.!!$R1 1173


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 634 0.037447 TGGGCCAATCGATGTGTTCA 59.963 50.0 2.13 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2410 2572 0.249868 TCTCACAAAGGTGCAGTCGG 60.25 55.0 0.0 0.0 44.87 4.79 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 112 5.838531 TTCCCGCTGAAAGAAAAACTAAA 57.161 34.783 0.00 0.00 34.07 1.85
159 161 4.021916 ACTCTGTACTACCACCACATACC 58.978 47.826 0.00 0.00 0.00 2.73
161 163 4.275810 TCTGTACTACCACCACATACCTC 58.724 47.826 0.00 0.00 0.00 3.85
258 263 2.258109 GGAAACCCTAGCCTCCGATAT 58.742 52.381 0.00 0.00 0.00 1.63
259 264 3.438183 GGAAACCCTAGCCTCCGATATA 58.562 50.000 0.00 0.00 0.00 0.86
260 265 4.031611 GGAAACCCTAGCCTCCGATATAT 58.968 47.826 0.00 0.00 0.00 0.86
261 266 5.206587 GGAAACCCTAGCCTCCGATATATA 58.793 45.833 0.00 0.00 0.00 0.86
262 267 5.659971 GGAAACCCTAGCCTCCGATATATAA 59.340 44.000 0.00 0.00 0.00 0.98
263 268 6.183360 GGAAACCCTAGCCTCCGATATATAAG 60.183 46.154 0.00 0.00 0.00 1.73
264 269 4.216708 ACCCTAGCCTCCGATATATAAGC 58.783 47.826 0.00 0.00 0.00 3.09
265 270 4.079096 ACCCTAGCCTCCGATATATAAGCT 60.079 45.833 0.00 0.00 0.00 3.74
266 271 4.521256 CCCTAGCCTCCGATATATAAGCTC 59.479 50.000 0.00 0.00 0.00 4.09
267 272 4.214545 CCTAGCCTCCGATATATAAGCTCG 59.785 50.000 0.00 0.00 0.00 5.03
378 383 1.876714 CCGCCGAGATGGTACGTTG 60.877 63.158 0.00 0.00 41.21 4.10
555 561 1.229209 TGTCGAGCTCCCCCTTTCT 60.229 57.895 8.47 0.00 0.00 2.52
561 567 0.914902 AGCTCCCCCTTTCTACCACC 60.915 60.000 0.00 0.00 0.00 4.61
628 634 0.037447 TGGGCCAATCGATGTGTTCA 59.963 50.000 2.13 0.00 0.00 3.18
635 641 4.501559 GCCAATCGATGTGTTCATCAATTG 59.498 41.667 12.22 12.22 46.54 2.32
656 662 5.353394 TGGCTTAGAACCTAGGTGTATTG 57.647 43.478 17.14 7.61 0.00 1.90
735 741 0.184933 TTGTGGGCTTGTGGCTAGTT 59.815 50.000 0.00 0.00 41.46 2.24
776 782 1.503542 CCATCTGCGCAAGTGGTTC 59.496 57.895 25.06 0.00 41.68 3.62
786 792 1.006102 AAGTGGTTCGAGTGGAGCG 60.006 57.895 0.00 0.00 0.00 5.03
824 830 2.952310 GGGAAGGATACAAACTGGATGC 59.048 50.000 0.00 0.00 41.41 3.91
842 848 6.808829 TGGATGCAATATCAGAACATTTTCC 58.191 36.000 0.00 0.00 31.28 3.13
845 851 7.437267 GGATGCAATATCAGAACATTTTCCTTG 59.563 37.037 0.00 0.00 31.28 3.61
855 861 8.999431 TCAGAACATTTTCCTTGTCTAATGTAC 58.001 33.333 0.00 0.00 39.55 2.90
1108 1115 2.386660 GCGCTTCTGCTGTGTCCTC 61.387 63.158 0.00 0.00 36.97 3.71
1155 1162 0.322322 CCAGGTACGGTGCCAGTTTA 59.678 55.000 17.72 0.00 0.00 2.01
1243 1250 6.075949 AGGTATGTCTTCTGTCACCTACTA 57.924 41.667 0.00 0.00 34.67 1.82
1244 1251 5.887035 AGGTATGTCTTCTGTCACCTACTAC 59.113 44.000 0.00 0.00 34.67 2.73
1245 1252 5.887035 GGTATGTCTTCTGTCACCTACTACT 59.113 44.000 0.00 0.00 0.00 2.57
1340 1349 3.009473 ACACTGACTACCTTTCCATGCAT 59.991 43.478 0.00 0.00 0.00 3.96
1341 1350 3.376234 CACTGACTACCTTTCCATGCATG 59.624 47.826 20.19 20.19 0.00 4.06
1366 1375 4.406972 TCATACTCCCTCAGTCTGGAATTG 59.593 45.833 0.00 0.00 36.43 2.32
1435 1445 8.871629 ATACGTCTAGATACATCCATTTCTCT 57.128 34.615 0.00 0.00 0.00 3.10
1496 1510 8.969121 TGATGTGATAGTTTTGTATTGCTTTG 57.031 30.769 0.00 0.00 0.00 2.77
1497 1511 7.541783 TGATGTGATAGTTTTGTATTGCTTTGC 59.458 33.333 0.00 0.00 0.00 3.68
1529 1543 3.562176 CCCTCCCAGTGATAGTTTTGCTT 60.562 47.826 0.00 0.00 0.00 3.91
1560 1574 7.760340 AGTCGTAATTTCCTCTCATCTTGTTAC 59.240 37.037 0.00 0.00 0.00 2.50
1617 1631 9.899226 GTTTTATCTTCTATTTGCAACAGAAGT 57.101 29.630 30.66 24.19 43.70 3.01
1712 1771 7.790823 TGTATATGTTGTCATCACCATGAAG 57.209 36.000 0.00 0.00 40.90 3.02
1753 1812 2.821437 TCTGAGTACAGGAAAGGGAGG 58.179 52.381 0.00 0.00 43.60 4.30
1828 1896 6.534475 TTTGACTTCCTATACGCTTCCTTA 57.466 37.500 0.00 0.00 0.00 2.69
1829 1897 6.534475 TTGACTTCCTATACGCTTCCTTAA 57.466 37.500 0.00 0.00 0.00 1.85
1830 1898 6.534475 TGACTTCCTATACGCTTCCTTAAA 57.466 37.500 0.00 0.00 0.00 1.52
1892 2034 6.519679 TGCTTTCTGCTTGTGAATCATAAT 57.480 33.333 0.00 0.00 43.37 1.28
2151 2294 4.757149 GCACTACTGTTGTCTTGAGGAATT 59.243 41.667 0.00 0.00 0.00 2.17
2181 2324 5.961396 TCTGTAGTGGAGTGAAGACTTAC 57.039 43.478 0.00 0.00 30.16 2.34
2203 2346 9.125026 CTTACCAATCTCTGTATTTTGGCTATT 57.875 33.333 0.62 0.00 41.89 1.73
2251 2400 8.576442 GGTTCTGATTTTAGGATCTTTCAAACA 58.424 33.333 0.00 0.00 0.00 2.83
2301 2450 6.127591 TGTTATGCGTTATGCCAACCTATTTT 60.128 34.615 8.02 0.00 45.60 1.82
2357 2507 3.054434 TCCACACCCCAAGTCAATCTATG 60.054 47.826 0.00 0.00 0.00 2.23
2358 2508 3.054434 CCACACCCCAAGTCAATCTATGA 60.054 47.826 0.00 0.00 35.05 2.15
2359 2509 4.567537 CCACACCCCAAGTCAATCTATGAA 60.568 45.833 0.00 0.00 40.50 2.57
2360 2510 4.396166 CACACCCCAAGTCAATCTATGAAC 59.604 45.833 0.00 0.00 40.50 3.18
2362 2512 4.637534 CACCCCAAGTCAATCTATGAACTG 59.362 45.833 0.00 0.00 40.50 3.16
2363 2513 4.289672 ACCCCAAGTCAATCTATGAACTGT 59.710 41.667 0.00 0.00 40.50 3.55
2396 2558 7.312657 ACATAGTACAGATGAAAATGCACAG 57.687 36.000 13.14 0.00 0.00 3.66
2397 2559 6.881065 ACATAGTACAGATGAAAATGCACAGT 59.119 34.615 13.14 0.00 0.00 3.55
2399 2561 5.308014 AGTACAGATGAAAATGCACAGTCA 58.692 37.500 0.00 0.00 0.00 3.41
2401 2563 3.254166 ACAGATGAAAATGCACAGTCACC 59.746 43.478 0.00 0.00 0.00 4.02
2404 2566 1.327303 GAAAATGCACAGTCACCCCA 58.673 50.000 0.00 0.00 0.00 4.96
2405 2567 1.270550 GAAAATGCACAGTCACCCCAG 59.729 52.381 0.00 0.00 0.00 4.45
2407 2569 0.250901 AATGCACAGTCACCCCAGAC 60.251 55.000 0.00 0.00 38.81 3.51
2408 2570 1.418097 ATGCACAGTCACCCCAGACA 61.418 55.000 0.00 0.00 40.98 3.41
2409 2571 1.598130 GCACAGTCACCCCAGACAC 60.598 63.158 0.00 0.00 40.98 3.67
2410 2572 1.071471 CACAGTCACCCCAGACACC 59.929 63.158 0.00 0.00 40.98 4.16
2411 2573 2.147387 ACAGTCACCCCAGACACCC 61.147 63.158 0.00 0.00 40.98 4.61
2414 2576 2.920912 TCACCCCAGACACCCGAC 60.921 66.667 0.00 0.00 0.00 4.79
2417 2579 4.394712 CCCCAGACACCCGACTGC 62.395 72.222 0.00 0.00 34.12 4.40
2420 2582 2.357517 CAGACACCCGACTGCACC 60.358 66.667 0.00 0.00 0.00 5.01
2421 2583 2.524394 AGACACCCGACTGCACCT 60.524 61.111 0.00 0.00 0.00 4.00
2422 2584 2.140792 AGACACCCGACTGCACCTT 61.141 57.895 0.00 0.00 0.00 3.50
2423 2585 1.227853 GACACCCGACTGCACCTTT 60.228 57.895 0.00 0.00 0.00 3.11
2424 2586 1.507141 GACACCCGACTGCACCTTTG 61.507 60.000 0.00 0.00 0.00 2.77
2426 2588 1.525995 ACCCGACTGCACCTTTGTG 60.526 57.895 0.00 0.00 45.65 3.33
2427 2589 1.227823 CCCGACTGCACCTTTGTGA 60.228 57.895 0.00 0.00 45.76 3.58
2428 2590 1.230635 CCCGACTGCACCTTTGTGAG 61.231 60.000 0.00 0.00 45.76 3.51
2429 2591 0.249868 CCGACTGCACCTTTGTGAGA 60.250 55.000 0.00 0.00 45.76 3.27
2430 2592 1.609061 CCGACTGCACCTTTGTGAGAT 60.609 52.381 0.00 0.00 45.76 2.75
2432 2594 2.096069 CGACTGCACCTTTGTGAGATTG 60.096 50.000 0.00 0.00 45.76 2.67
2433 2595 3.141398 GACTGCACCTTTGTGAGATTGA 58.859 45.455 0.00 0.00 45.76 2.57
2435 2597 1.881973 TGCACCTTTGTGAGATTGAGC 59.118 47.619 0.00 0.00 45.76 4.26
2436 2598 1.200948 GCACCTTTGTGAGATTGAGCC 59.799 52.381 0.00 0.00 45.76 4.70
2437 2599 2.507484 CACCTTTGTGAGATTGAGCCA 58.493 47.619 0.00 0.00 45.76 4.75
2439 2601 2.887152 ACCTTTGTGAGATTGAGCCAAC 59.113 45.455 0.00 0.00 0.00 3.77
2440 2602 2.886523 CCTTTGTGAGATTGAGCCAACA 59.113 45.455 0.00 0.00 0.00 3.33
2441 2603 3.304928 CCTTTGTGAGATTGAGCCAACAC 60.305 47.826 0.00 0.00 0.00 3.32
2442 2604 2.636647 TGTGAGATTGAGCCAACACA 57.363 45.000 0.00 0.00 36.22 3.72
2448 2610 4.197750 GAGATTGAGCCAACACATCATCT 58.802 43.478 0.00 0.00 0.00 2.90
2449 2611 3.945921 AGATTGAGCCAACACATCATCTG 59.054 43.478 0.00 0.00 0.00 2.90
2450 2612 3.421919 TTGAGCCAACACATCATCTGA 57.578 42.857 0.00 0.00 0.00 3.27
2451 2613 2.981898 TGAGCCAACACATCATCTGAG 58.018 47.619 0.00 0.00 0.00 3.35
2452 2614 2.568509 TGAGCCAACACATCATCTGAGA 59.431 45.455 0.00 0.00 0.00 3.27
2453 2615 3.199289 TGAGCCAACACATCATCTGAGAT 59.801 43.478 0.00 0.00 0.00 2.75
2459 2621 5.878669 CCAACACATCATCTGAGATTGAGAA 59.121 40.000 1.39 0.00 0.00 2.87
2500 2662 4.095036 GGAGGAAAATGTTAGTAGCAGTGC 59.905 45.833 7.13 7.13 0.00 4.40
2532 2710 4.494855 GCTGGTCGCATCTCTAAAATTGTC 60.495 45.833 0.00 0.00 38.92 3.18
2657 2846 5.078411 TGCACTGTAAAAACATTTGTGGT 57.922 34.783 0.00 0.00 0.00 4.16
2665 2854 3.708563 AAACATTTGTGGTTGTCTCGG 57.291 42.857 0.00 0.00 0.00 4.63
2707 2897 9.611284 TCAAAAGTGATTACAAGAAATGATTCG 57.389 29.630 0.00 0.00 40.63 3.34
2708 2898 9.611284 CAAAAGTGATTACAAGAAATGATTCGA 57.389 29.630 0.00 0.00 40.63 3.71
2735 2937 2.509336 CGTACGCTGCTCCCAAGG 60.509 66.667 0.52 0.00 0.00 3.61
2739 2941 4.379243 CGCTGCTCCCAAGGTCGT 62.379 66.667 0.00 0.00 0.00 4.34
2741 2943 2.948720 GCTGCTCCCAAGGTCGTCT 61.949 63.158 0.00 0.00 0.00 4.18
2742 2944 1.605058 GCTGCTCCCAAGGTCGTCTA 61.605 60.000 0.00 0.00 0.00 2.59
2754 3126 5.287226 CAAGGTCGTCTAGTGTTACAAGTT 58.713 41.667 0.00 0.00 0.00 2.66
2755 3127 6.441274 CAAGGTCGTCTAGTGTTACAAGTTA 58.559 40.000 0.00 0.00 0.00 2.24
2756 3128 6.006759 AGGTCGTCTAGTGTTACAAGTTAC 57.993 41.667 0.00 0.00 0.00 2.50
2757 3129 4.848299 GGTCGTCTAGTGTTACAAGTTACG 59.152 45.833 5.57 5.57 0.00 3.18
2758 3130 5.334105 GGTCGTCTAGTGTTACAAGTTACGA 60.334 44.000 9.18 9.18 34.80 3.43
2759 3131 5.561873 GTCGTCTAGTGTTACAAGTTACGAC 59.438 44.000 20.28 20.28 46.30 4.34
2760 3132 5.466728 TCGTCTAGTGTTACAAGTTACGACT 59.533 40.000 9.18 0.00 37.87 4.18
2761 3133 6.645003 TCGTCTAGTGTTACAAGTTACGACTA 59.355 38.462 9.18 0.00 34.21 2.59
2762 3134 6.734171 CGTCTAGTGTTACAAGTTACGACTAC 59.266 42.308 5.91 0.00 34.21 2.73
2778 3192 3.184581 CGACTACTTCTGCAAAGGTGTTC 59.815 47.826 11.59 0.00 0.00 3.18
2779 3193 3.131396 ACTACTTCTGCAAAGGTGTTCG 58.869 45.455 11.59 0.00 0.00 3.95
2781 3195 2.213499 ACTTCTGCAAAGGTGTTCGAG 58.787 47.619 11.59 0.00 0.00 4.04
2782 3196 2.213499 CTTCTGCAAAGGTGTTCGAGT 58.787 47.619 0.00 0.00 0.00 4.18
2818 3368 2.831526 ACAAAGGTTCTGTTGCAAAGGT 59.168 40.909 0.00 0.00 0.00 3.50
2819 3369 3.189285 CAAAGGTTCTGTTGCAAAGGTG 58.811 45.455 0.00 0.00 0.00 4.00
2820 3370 2.143876 AGGTTCTGTTGCAAAGGTGT 57.856 45.000 0.00 0.00 0.00 4.16
2821 3371 1.750778 AGGTTCTGTTGCAAAGGTGTG 59.249 47.619 0.00 0.00 0.00 3.82
2822 3372 1.476488 GGTTCTGTTGCAAAGGTGTGT 59.524 47.619 0.00 0.00 0.00 3.72
2823 3373 2.094234 GGTTCTGTTGCAAAGGTGTGTT 60.094 45.455 0.00 0.00 0.00 3.32
2824 3374 3.179048 GTTCTGTTGCAAAGGTGTGTTC 58.821 45.455 0.00 0.00 0.00 3.18
2825 3375 2.722094 TCTGTTGCAAAGGTGTGTTCT 58.278 42.857 0.00 0.00 0.00 3.01
2826 3376 2.423185 TCTGTTGCAAAGGTGTGTTCTG 59.577 45.455 0.00 0.00 0.00 3.02
2827 3377 2.423185 CTGTTGCAAAGGTGTGTTCTGA 59.577 45.455 0.00 0.00 0.00 3.27
2828 3378 2.163412 TGTTGCAAAGGTGTGTTCTGAC 59.837 45.455 0.00 0.00 0.00 3.51
2829 3379 2.121291 TGCAAAGGTGTGTTCTGACA 57.879 45.000 0.00 0.00 0.00 3.58
2830 3380 2.016318 TGCAAAGGTGTGTTCTGACAG 58.984 47.619 0.00 0.00 36.20 3.51
2831 3381 1.268743 GCAAAGGTGTGTTCTGACAGC 60.269 52.381 0.00 0.00 43.33 4.40
2832 3382 2.016318 CAAAGGTGTGTTCTGACAGCA 58.984 47.619 0.00 0.00 45.03 4.41
2833 3383 1.959042 AAGGTGTGTTCTGACAGCAG 58.041 50.000 0.00 0.00 45.03 4.24
2859 3409 6.573664 GCTCTAGCTCTTAGATTCAGATCA 57.426 41.667 0.00 0.00 37.75 2.92
2860 3410 7.161773 GCTCTAGCTCTTAGATTCAGATCAT 57.838 40.000 0.00 0.00 37.75 2.45
2861 3411 7.253422 GCTCTAGCTCTTAGATTCAGATCATC 58.747 42.308 0.00 0.00 37.75 2.92
2862 3412 7.121759 GCTCTAGCTCTTAGATTCAGATCATCT 59.878 40.741 0.00 0.00 37.75 2.90
2863 3413 8.565896 TCTAGCTCTTAGATTCAGATCATCTC 57.434 38.462 0.00 0.00 33.42 2.75
2864 3414 8.385491 TCTAGCTCTTAGATTCAGATCATCTCT 58.615 37.037 0.00 0.00 33.42 3.10
2865 3415 7.844493 AGCTCTTAGATTCAGATCATCTCTT 57.156 36.000 0.00 0.00 34.60 2.85
2866 3416 8.938801 AGCTCTTAGATTCAGATCATCTCTTA 57.061 34.615 0.00 0.00 34.60 2.10
2867 3417 8.796475 AGCTCTTAGATTCAGATCATCTCTTAC 58.204 37.037 0.00 0.00 34.60 2.34
2868 3418 8.575589 GCTCTTAGATTCAGATCATCTCTTACA 58.424 37.037 0.00 0.00 34.60 2.41
2869 3419 9.897744 CTCTTAGATTCAGATCATCTCTTACAC 57.102 37.037 0.00 0.00 34.60 2.90
2870 3420 9.413734 TCTTAGATTCAGATCATCTCTTACACA 57.586 33.333 0.00 0.00 34.60 3.72
2874 3424 9.730705 AGATTCAGATCATCTCTTACACAAAAA 57.269 29.630 0.00 0.00 34.60 1.94
2875 3425 9.985318 GATTCAGATCATCTCTTACACAAAAAG 57.015 33.333 0.00 0.00 32.33 2.27
2876 3426 7.369803 TCAGATCATCTCTTACACAAAAAGC 57.630 36.000 0.00 0.00 29.16 3.51
2877 3427 6.091305 TCAGATCATCTCTTACACAAAAAGCG 59.909 38.462 0.00 0.00 29.16 4.68
2878 3428 5.352569 AGATCATCTCTTACACAAAAAGCGG 59.647 40.000 0.00 0.00 0.00 5.52
2879 3429 3.751175 TCATCTCTTACACAAAAAGCGGG 59.249 43.478 0.00 0.00 0.00 6.13
2880 3430 3.478857 TCTCTTACACAAAAAGCGGGA 57.521 42.857 0.00 0.00 0.00 5.14
2881 3431 4.015872 TCTCTTACACAAAAAGCGGGAT 57.984 40.909 0.00 0.00 0.00 3.85
2882 3432 3.751175 TCTCTTACACAAAAAGCGGGATG 59.249 43.478 0.00 0.00 0.00 3.51
2883 3433 2.227865 TCTTACACAAAAAGCGGGATGC 59.772 45.455 0.00 0.00 46.98 3.91
2893 3443 3.334078 GCGGGATGCAATTGTCTTG 57.666 52.632 7.40 0.00 45.45 3.02
2894 3444 0.527565 GCGGGATGCAATTGTCTTGT 59.472 50.000 7.40 0.00 45.45 3.16
2895 3445 1.067635 GCGGGATGCAATTGTCTTGTT 60.068 47.619 7.40 0.00 45.45 2.83
2896 3446 2.163412 GCGGGATGCAATTGTCTTGTTA 59.837 45.455 7.40 0.00 45.45 2.41
2897 3447 3.181487 GCGGGATGCAATTGTCTTGTTAT 60.181 43.478 7.40 0.00 45.45 1.89
2898 3448 4.677779 GCGGGATGCAATTGTCTTGTTATT 60.678 41.667 7.40 0.00 45.45 1.40
2899 3449 5.449862 GCGGGATGCAATTGTCTTGTTATTA 60.450 40.000 7.40 0.00 45.45 0.98
2900 3450 6.559810 CGGGATGCAATTGTCTTGTTATTAA 58.440 36.000 7.40 0.00 0.00 1.40
2901 3451 6.472163 CGGGATGCAATTGTCTTGTTATTAAC 59.528 38.462 7.40 0.00 0.00 2.01
2902 3452 7.547227 GGGATGCAATTGTCTTGTTATTAACT 58.453 34.615 7.40 0.00 0.00 2.24
2903 3453 7.702348 GGGATGCAATTGTCTTGTTATTAACTC 59.298 37.037 7.40 0.00 0.00 3.01
2904 3454 8.462016 GGATGCAATTGTCTTGTTATTAACTCT 58.538 33.333 7.40 0.00 0.00 3.24
2905 3455 9.282247 GATGCAATTGTCTTGTTATTAACTCTG 57.718 33.333 7.40 0.00 0.00 3.35
2906 3456 8.389779 TGCAATTGTCTTGTTATTAACTCTGA 57.610 30.769 7.40 1.58 0.00 3.27
2907 3457 9.013229 TGCAATTGTCTTGTTATTAACTCTGAT 57.987 29.630 7.40 0.00 0.00 2.90
2925 3475 9.689976 AACTCTGATAATATGAAAGTGATCGAG 57.310 33.333 0.00 0.00 0.00 4.04
2926 3476 9.072375 ACTCTGATAATATGAAAGTGATCGAGA 57.928 33.333 0.00 0.00 0.00 4.04
2927 3477 9.340695 CTCTGATAATATGAAAGTGATCGAGAC 57.659 37.037 0.00 0.00 0.00 3.36
2928 3478 8.850156 TCTGATAATATGAAAGTGATCGAGACA 58.150 33.333 0.00 0.00 0.00 3.41
2929 3479 9.468532 CTGATAATATGAAAGTGATCGAGACAA 57.531 33.333 0.00 0.00 0.00 3.18
2930 3480 9.987272 TGATAATATGAAAGTGATCGAGACAAT 57.013 29.630 0.00 0.00 0.00 2.71
2932 3482 9.987272 ATAATATGAAAGTGATCGAGACAATGA 57.013 29.630 0.00 0.00 0.00 2.57
2933 3483 8.722480 AATATGAAAGTGATCGAGACAATGAA 57.278 30.769 0.00 0.00 0.00 2.57
2934 3484 6.659361 ATGAAAGTGATCGAGACAATGAAG 57.341 37.500 0.00 0.00 0.00 3.02
2935 3485 5.783111 TGAAAGTGATCGAGACAATGAAGA 58.217 37.500 0.00 0.00 0.00 2.87
2936 3486 6.223120 TGAAAGTGATCGAGACAATGAAGAA 58.777 36.000 0.00 0.00 0.00 2.52
2937 3487 6.705825 TGAAAGTGATCGAGACAATGAAGAAA 59.294 34.615 0.00 0.00 0.00 2.52
2938 3488 6.473397 AAGTGATCGAGACAATGAAGAAAC 57.527 37.500 0.00 0.00 0.00 2.78
2939 3489 4.623167 AGTGATCGAGACAATGAAGAAACG 59.377 41.667 0.00 0.00 0.00 3.60
2940 3490 3.926527 TGATCGAGACAATGAAGAAACGG 59.073 43.478 0.00 0.00 0.00 4.44
2941 3491 3.380479 TCGAGACAATGAAGAAACGGT 57.620 42.857 0.00 0.00 0.00 4.83
2942 3492 3.314553 TCGAGACAATGAAGAAACGGTC 58.685 45.455 0.00 0.00 0.00 4.79
2943 3493 3.005472 TCGAGACAATGAAGAAACGGTCT 59.995 43.478 0.00 0.00 38.24 3.85
2944 3494 3.121944 CGAGACAATGAAGAAACGGTCTG 59.878 47.826 0.00 0.00 36.40 3.51
2945 3495 2.808543 AGACAATGAAGAAACGGTCTGC 59.191 45.455 0.00 0.00 36.40 4.26
2946 3496 1.531149 ACAATGAAGAAACGGTCTGCG 59.469 47.619 0.00 0.00 33.99 5.18
2947 3497 1.135972 CAATGAAGAAACGGTCTGCGG 60.136 52.381 0.00 0.00 33.99 5.69
2948 3498 0.673644 ATGAAGAAACGGTCTGCGGG 60.674 55.000 0.00 0.00 33.99 6.13
2949 3499 1.005394 GAAGAAACGGTCTGCGGGA 60.005 57.895 0.00 0.00 36.40 5.14
2950 3500 1.004918 AAGAAACGGTCTGCGGGAG 60.005 57.895 0.00 0.00 36.40 4.30
2951 3501 1.469335 AAGAAACGGTCTGCGGGAGA 61.469 55.000 0.00 0.00 36.40 3.71
2952 3502 1.446272 GAAACGGTCTGCGGGAGAG 60.446 63.158 0.00 0.00 0.00 3.20
2953 3503 2.837371 GAAACGGTCTGCGGGAGAGG 62.837 65.000 0.00 0.00 0.00 3.69
2957 3507 4.500116 GTCTGCGGGAGAGGCGTC 62.500 72.222 0.00 0.00 0.00 5.19
2964 3514 4.803426 GGAGAGGCGTCGGCAGTG 62.803 72.222 21.79 0.00 42.47 3.66
2965 3515 4.057428 GAGAGGCGTCGGCAGTGT 62.057 66.667 21.79 0.00 42.47 3.55
2966 3516 3.575351 GAGAGGCGTCGGCAGTGTT 62.575 63.158 21.79 0.00 42.47 3.32
2967 3517 2.665185 GAGGCGTCGGCAGTGTTT 60.665 61.111 21.79 0.00 42.47 2.83
2968 3518 2.954753 GAGGCGTCGGCAGTGTTTG 61.955 63.158 21.79 0.00 42.47 2.93
2969 3519 2.970324 GGCGTCGGCAGTGTTTGA 60.970 61.111 14.73 0.00 42.47 2.69
2970 3520 2.248431 GCGTCGGCAGTGTTTGAC 59.752 61.111 0.00 0.00 39.62 3.18
2976 3526 3.092081 GGCAGTGTTTGACGATTGC 57.908 52.632 0.00 0.00 0.00 3.56
2977 3527 0.593128 GGCAGTGTTTGACGATTGCT 59.407 50.000 0.00 0.00 0.00 3.91
2978 3528 1.804151 GGCAGTGTTTGACGATTGCTA 59.196 47.619 0.00 0.00 0.00 3.49
2979 3529 2.420022 GGCAGTGTTTGACGATTGCTAT 59.580 45.455 0.00 0.00 0.00 2.97
2980 3530 3.119849 GGCAGTGTTTGACGATTGCTATT 60.120 43.478 0.00 0.00 0.00 1.73
2981 3531 4.475944 GCAGTGTTTGACGATTGCTATTT 58.524 39.130 0.00 0.00 0.00 1.40
2982 3532 4.917415 GCAGTGTTTGACGATTGCTATTTT 59.083 37.500 0.00 0.00 0.00 1.82
2983 3533 5.402270 GCAGTGTTTGACGATTGCTATTTTT 59.598 36.000 0.00 0.00 0.00 1.94
3004 3554 5.975988 TTTGGCTTGTATATCTTCCCTCT 57.024 39.130 0.00 0.00 0.00 3.69
3005 3555 5.552870 TTGGCTTGTATATCTTCCCTCTC 57.447 43.478 0.00 0.00 0.00 3.20
3006 3556 4.556697 TGGCTTGTATATCTTCCCTCTCA 58.443 43.478 0.00 0.00 0.00 3.27
3007 3557 5.158141 TGGCTTGTATATCTTCCCTCTCAT 58.842 41.667 0.00 0.00 0.00 2.90
3008 3558 5.608437 TGGCTTGTATATCTTCCCTCTCATT 59.392 40.000 0.00 0.00 0.00 2.57
3009 3559 6.787458 TGGCTTGTATATCTTCCCTCTCATTA 59.213 38.462 0.00 0.00 0.00 1.90
3010 3560 7.038729 TGGCTTGTATATCTTCCCTCTCATTAG 60.039 40.741 0.00 0.00 0.00 1.73
3011 3561 7.038658 GGCTTGTATATCTTCCCTCTCATTAGT 60.039 40.741 0.00 0.00 0.00 2.24
3012 3562 8.032451 GCTTGTATATCTTCCCTCTCATTAGTC 58.968 40.741 0.00 0.00 0.00 2.59
3013 3563 9.308000 CTTGTATATCTTCCCTCTCATTAGTCT 57.692 37.037 0.00 0.00 0.00 3.24
3014 3564 9.661954 TTGTATATCTTCCCTCTCATTAGTCTT 57.338 33.333 0.00 0.00 0.00 3.01
3019 3569 7.792364 TCTTCCCTCTCATTAGTCTTAAACA 57.208 36.000 0.00 0.00 0.00 2.83
3020 3570 8.380742 TCTTCCCTCTCATTAGTCTTAAACAT 57.619 34.615 0.00 0.00 0.00 2.71
3021 3571 8.826765 TCTTCCCTCTCATTAGTCTTAAACATT 58.173 33.333 0.00 0.00 0.00 2.71
3022 3572 8.792830 TTCCCTCTCATTAGTCTTAAACATTG 57.207 34.615 0.00 0.00 0.00 2.82
3023 3573 7.918076 TCCCTCTCATTAGTCTTAAACATTGT 58.082 34.615 0.00 0.00 0.00 2.71
3024 3574 9.042450 TCCCTCTCATTAGTCTTAAACATTGTA 57.958 33.333 0.00 0.00 0.00 2.41
3025 3575 9.667107 CCCTCTCATTAGTCTTAAACATTGTAA 57.333 33.333 0.00 0.00 0.00 2.41
3034 3584 8.507524 AGTCTTAAACATTGTAATAGGGAAGC 57.492 34.615 0.00 0.00 0.00 3.86
3035 3585 7.280205 AGTCTTAAACATTGTAATAGGGAAGCG 59.720 37.037 0.00 0.00 0.00 4.68
3036 3586 7.279313 GTCTTAAACATTGTAATAGGGAAGCGA 59.721 37.037 0.00 0.00 0.00 4.93
3037 3587 7.825270 TCTTAAACATTGTAATAGGGAAGCGAA 59.175 33.333 0.00 0.00 0.00 4.70
3038 3588 8.514330 TTAAACATTGTAATAGGGAAGCGAAT 57.486 30.769 0.00 0.00 0.00 3.34
3039 3589 9.616156 TTAAACATTGTAATAGGGAAGCGAATA 57.384 29.630 0.00 0.00 0.00 1.75
3040 3590 8.691661 AAACATTGTAATAGGGAAGCGAATAT 57.308 30.769 0.00 0.00 0.00 1.28
3041 3591 7.672983 ACATTGTAATAGGGAAGCGAATATG 57.327 36.000 0.00 0.00 0.00 1.78
3042 3592 7.450074 ACATTGTAATAGGGAAGCGAATATGA 58.550 34.615 0.00 0.00 0.00 2.15
3043 3593 8.103305 ACATTGTAATAGGGAAGCGAATATGAT 58.897 33.333 0.00 0.00 0.00 2.45
3044 3594 8.950210 CATTGTAATAGGGAAGCGAATATGATT 58.050 33.333 0.00 0.00 0.00 2.57
3045 3595 7.905604 TGTAATAGGGAAGCGAATATGATTG 57.094 36.000 0.00 0.00 0.00 2.67
3046 3596 5.886960 AATAGGGAAGCGAATATGATTGC 57.113 39.130 0.00 0.00 0.00 3.56
3047 3597 3.498774 AGGGAAGCGAATATGATTGCT 57.501 42.857 0.00 0.00 41.92 3.91
3048 3598 3.406764 AGGGAAGCGAATATGATTGCTC 58.593 45.455 0.00 0.00 39.16 4.26
3049 3599 3.141398 GGGAAGCGAATATGATTGCTCA 58.859 45.455 0.00 0.00 39.16 4.26
3050 3600 3.755378 GGGAAGCGAATATGATTGCTCAT 59.245 43.478 0.00 0.00 44.39 2.90
3051 3601 4.379186 GGGAAGCGAATATGATTGCTCATG 60.379 45.833 0.00 0.00 42.19 3.07
3052 3602 4.453478 GGAAGCGAATATGATTGCTCATGA 59.547 41.667 0.00 0.00 42.19 3.07
3053 3603 5.049198 GGAAGCGAATATGATTGCTCATGAA 60.049 40.000 0.00 0.00 42.19 2.57
3054 3604 6.381481 AAGCGAATATGATTGCTCATGAAA 57.619 33.333 0.00 0.00 42.19 2.69
3055 3605 6.570672 AGCGAATATGATTGCTCATGAAAT 57.429 33.333 0.00 0.00 42.19 2.17
3056 3606 6.978338 AGCGAATATGATTGCTCATGAAATT 58.022 32.000 0.00 0.00 42.19 1.82
3057 3607 6.861572 AGCGAATATGATTGCTCATGAAATTG 59.138 34.615 0.00 0.00 42.19 2.32
3058 3608 6.399669 GCGAATATGATTGCTCATGAAATTGC 60.400 38.462 0.00 0.00 42.19 3.56
3059 3609 6.861572 CGAATATGATTGCTCATGAAATTGCT 59.138 34.615 0.00 0.00 42.19 3.91
3060 3610 8.019094 CGAATATGATTGCTCATGAAATTGCTA 58.981 33.333 0.00 0.00 42.19 3.49
3061 3611 9.343103 GAATATGATTGCTCATGAAATTGCTAG 57.657 33.333 0.00 0.00 42.19 3.42
3062 3612 5.509716 TGATTGCTCATGAAATTGCTAGG 57.490 39.130 0.00 0.00 0.00 3.02
3063 3613 3.788333 TTGCTCATGAAATTGCTAGGC 57.212 42.857 0.00 0.00 0.00 3.93
3064 3614 3.008835 TGCTCATGAAATTGCTAGGCT 57.991 42.857 0.00 0.00 0.00 4.58
3065 3615 4.155063 TGCTCATGAAATTGCTAGGCTA 57.845 40.909 0.00 0.00 0.00 3.93
3066 3616 4.132336 TGCTCATGAAATTGCTAGGCTAG 58.868 43.478 17.33 17.33 0.00 3.42
3080 3630 5.314923 CTAGGCTAGCAAAATTTTCTGCA 57.685 39.130 18.24 0.00 41.17 4.41
3081 3631 4.605640 AGGCTAGCAAAATTTTCTGCAA 57.394 36.364 18.24 0.00 41.17 4.08
3082 3632 4.309933 AGGCTAGCAAAATTTTCTGCAAC 58.690 39.130 18.24 5.72 41.17 4.17
3083 3633 4.057432 GGCTAGCAAAATTTTCTGCAACA 58.943 39.130 18.24 2.02 41.17 3.33
3084 3634 4.511082 GGCTAGCAAAATTTTCTGCAACAA 59.489 37.500 18.24 0.30 41.17 2.83
3085 3635 5.007528 GGCTAGCAAAATTTTCTGCAACAAA 59.992 36.000 18.24 0.00 41.17 2.83
3086 3636 6.293571 GGCTAGCAAAATTTTCTGCAACAAAT 60.294 34.615 18.24 0.00 41.17 2.32
3087 3637 7.134163 GCTAGCAAAATTTTCTGCAACAAATT 58.866 30.769 10.63 8.91 41.17 1.82
3088 3638 7.321984 GCTAGCAAAATTTTCTGCAACAAATTC 59.678 33.333 10.63 4.81 41.17 2.17
3089 3639 7.324354 AGCAAAATTTTCTGCAACAAATTCT 57.676 28.000 15.37 6.47 41.17 2.40
3090 3640 7.764331 AGCAAAATTTTCTGCAACAAATTCTT 58.236 26.923 15.37 8.89 41.17 2.52
3091 3641 7.698970 AGCAAAATTTTCTGCAACAAATTCTTG 59.301 29.630 15.37 16.71 41.17 3.02
3092 3642 7.043920 GCAAAATTTTCTGCAACAAATTCTTGG 60.044 33.333 21.16 12.87 38.48 3.61
3093 3643 7.628769 AAATTTTCTGCAACAAATTCTTGGT 57.371 28.000 13.33 0.00 36.82 3.67
3094 3644 7.628769 AATTTTCTGCAACAAATTCTTGGTT 57.371 28.000 8.91 0.00 36.82 3.67
3095 3645 7.628769 ATTTTCTGCAACAAATTCTTGGTTT 57.371 28.000 0.00 0.00 36.82 3.27
3096 3646 6.419980 TTTCTGCAACAAATTCTTGGTTTG 57.580 33.333 0.00 0.00 41.22 2.93
3097 3647 5.336150 TCTGCAACAAATTCTTGGTTTGA 57.664 34.783 5.69 0.00 38.51 2.69
3098 3648 5.350633 TCTGCAACAAATTCTTGGTTTGAG 58.649 37.500 5.69 0.18 38.51 3.02
3099 3649 4.440880 TGCAACAAATTCTTGGTTTGAGG 58.559 39.130 5.69 0.00 38.51 3.86
3100 3650 4.161189 TGCAACAAATTCTTGGTTTGAGGA 59.839 37.500 5.69 0.00 38.51 3.71
3101 3651 4.746611 GCAACAAATTCTTGGTTTGAGGAG 59.253 41.667 5.69 0.00 38.51 3.69
3102 3652 4.590850 ACAAATTCTTGGTTTGAGGAGC 57.409 40.909 5.69 0.00 38.51 4.70
3103 3653 3.321968 ACAAATTCTTGGTTTGAGGAGCC 59.678 43.478 5.69 0.00 38.51 4.70
3104 3654 1.826385 ATTCTTGGTTTGAGGAGCCG 58.174 50.000 0.00 0.00 0.00 5.52
3105 3655 0.762418 TTCTTGGTTTGAGGAGCCGA 59.238 50.000 0.00 0.00 0.00 5.54
3106 3656 0.984230 TCTTGGTTTGAGGAGCCGAT 59.016 50.000 0.00 0.00 0.00 4.18
3107 3657 1.089920 CTTGGTTTGAGGAGCCGATG 58.910 55.000 0.00 0.00 0.00 3.84
3108 3658 0.322456 TTGGTTTGAGGAGCCGATGG 60.322 55.000 0.00 0.00 0.00 3.51
3109 3659 1.198094 TGGTTTGAGGAGCCGATGGA 61.198 55.000 0.00 0.00 0.00 3.41
3110 3660 0.744771 GGTTTGAGGAGCCGATGGAC 60.745 60.000 0.00 0.00 0.00 4.02
3111 3661 1.084370 GTTTGAGGAGCCGATGGACG 61.084 60.000 0.00 0.00 42.18 4.79
3112 3662 1.254975 TTTGAGGAGCCGATGGACGA 61.255 55.000 0.00 0.00 45.77 4.20
3113 3663 1.043116 TTGAGGAGCCGATGGACGAT 61.043 55.000 0.00 0.00 45.77 3.73
3114 3664 0.179001 TGAGGAGCCGATGGACGATA 60.179 55.000 0.00 0.00 45.77 2.92
3115 3665 1.178276 GAGGAGCCGATGGACGATAT 58.822 55.000 0.00 0.00 45.77 1.63
3116 3666 1.546476 GAGGAGCCGATGGACGATATT 59.454 52.381 0.00 0.00 45.77 1.28
3117 3667 1.273606 AGGAGCCGATGGACGATATTG 59.726 52.381 0.00 0.00 45.77 1.90
3118 3668 1.000955 GGAGCCGATGGACGATATTGT 59.999 52.381 0.00 0.00 45.77 2.71
3119 3669 2.230508 GGAGCCGATGGACGATATTGTA 59.769 50.000 0.00 0.00 45.77 2.41
3120 3670 3.305813 GGAGCCGATGGACGATATTGTAA 60.306 47.826 0.00 0.00 45.77 2.41
3121 3671 3.650139 AGCCGATGGACGATATTGTAAC 58.350 45.455 0.00 0.00 45.77 2.50
3122 3672 3.069016 AGCCGATGGACGATATTGTAACA 59.931 43.478 0.00 0.00 45.77 2.41
3123 3673 3.183775 GCCGATGGACGATATTGTAACAC 59.816 47.826 0.00 0.00 45.77 3.32
3124 3674 4.617959 CCGATGGACGATATTGTAACACT 58.382 43.478 0.00 0.00 45.77 3.55
3125 3675 5.047847 CCGATGGACGATATTGTAACACTT 58.952 41.667 0.00 0.00 45.77 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 112 6.294010 GGCTTTCTTCACTCGGTTAGAAAATT 60.294 38.462 0.00 0.00 36.50 1.82
159 161 0.681564 AGGTGGGCTCACTACTCGAG 60.682 60.000 18.03 11.84 43.17 4.04
161 163 1.609555 GATAGGTGGGCTCACTACTCG 59.390 57.143 18.03 0.00 43.17 4.18
263 268 1.623163 AGAGGGGAGCTTATACGAGC 58.377 55.000 0.00 0.00 43.02 5.03
264 269 2.750712 GCTAGAGGGGAGCTTATACGAG 59.249 54.545 0.00 0.00 36.96 4.18
265 270 2.792878 GCTAGAGGGGAGCTTATACGA 58.207 52.381 0.00 0.00 36.96 3.43
266 271 1.469308 CGCTAGAGGGGAGCTTATACG 59.531 57.143 0.00 0.00 37.81 3.06
267 272 1.202817 GCGCTAGAGGGGAGCTTATAC 59.797 57.143 0.00 0.00 37.81 1.47
378 383 2.478200 CCGAGAAAGGAAGTACGAGAGC 60.478 54.545 0.00 0.00 0.00 4.09
555 561 1.229272 AGGGCTAACACGGGTGGTA 60.229 57.895 0.00 0.00 34.19 3.25
561 567 0.034896 ACAACTCAGGGCTAACACGG 59.965 55.000 0.00 0.00 0.00 4.94
628 634 5.044846 ACACCTAGGTTCTAAGCCAATTGAT 60.045 40.000 13.15 0.00 0.00 2.57
635 641 4.444449 CCCAATACACCTAGGTTCTAAGCC 60.444 50.000 13.15 0.00 0.00 4.35
695 701 2.816087 ACACCATGTCAGTGCAGATTTC 59.184 45.455 0.00 0.00 38.87 2.17
735 741 4.102681 GCTTTTCCCCTGCTATTCTACCTA 59.897 45.833 0.00 0.00 0.00 3.08
776 782 0.595053 AATATCGCACGCTCCACTCG 60.595 55.000 0.00 0.00 0.00 4.18
786 792 3.859411 TCCCCAAACAAAATATCGCAC 57.141 42.857 0.00 0.00 0.00 5.34
842 848 8.425491 CAACGAAACACTAGTACATTAGACAAG 58.575 37.037 0.00 0.00 0.00 3.16
845 851 8.584600 CATCAACGAAACACTAGTACATTAGAC 58.415 37.037 0.00 0.00 0.00 2.59
855 861 6.467723 AGCTTAACATCAACGAAACACTAG 57.532 37.500 0.00 0.00 0.00 2.57
1108 1115 6.925165 CCTATAACATTGCAAGGGCTAATTTG 59.075 38.462 16.45 2.66 41.91 2.32
1155 1162 4.160439 TCCATCTTCTTGATCTGCTTACGT 59.840 41.667 0.00 0.00 32.05 3.57
1243 1250 3.066621 CACAATGCACTGTGTAACCAAGT 59.933 43.478 19.77 0.26 41.52 3.16
1244 1251 3.631144 CACAATGCACTGTGTAACCAAG 58.369 45.455 19.77 0.00 41.52 3.61
1245 1252 3.706802 CACAATGCACTGTGTAACCAA 57.293 42.857 19.77 0.00 41.52 3.67
1340 1349 3.099905 CCAGACTGAGGGAGTATGAACA 58.900 50.000 3.32 0.00 45.33 3.18
1341 1350 3.366396 TCCAGACTGAGGGAGTATGAAC 58.634 50.000 3.32 0.00 45.33 3.18
1413 1423 7.081349 GTCAGAGAAATGGATGTATCTAGACG 58.919 42.308 0.00 0.00 0.00 4.18
1435 1445 5.762179 ACTCCATCCAGAAATACTTGTCA 57.238 39.130 0.00 0.00 0.00 3.58
1481 1495 7.967771 AAAAACATGCAAAGCAATACAAAAC 57.032 28.000 0.00 0.00 43.62 2.43
1508 1522 3.356529 AGCAAAACTATCACTGGGAGG 57.643 47.619 0.00 0.00 0.00 4.30
1529 1543 5.462530 TGAGAGGAAATTACGACTGACAA 57.537 39.130 0.00 0.00 0.00 3.18
1560 1574 8.035394 AGCATAAGATATTACAGGGTAATGACG 58.965 37.037 10.94 0.00 0.00 4.35
1617 1631 6.038714 GGCAACAATAAAACCAAATTGGACAA 59.961 34.615 20.25 1.38 40.96 3.18
1712 1771 5.581085 CAGATTACTACAGTACAACAAGCCC 59.419 44.000 0.00 0.00 0.00 5.19
1830 1898 9.602568 ACCAAACAAAAGTTTCCGTATATTTTT 57.397 25.926 0.00 0.00 0.00 1.94
1839 1909 4.490743 AGACAACCAAACAAAAGTTTCCG 58.509 39.130 0.00 0.00 0.00 4.30
2151 2294 1.149288 ACTCCACTACAGAACCCCTGA 59.851 52.381 0.00 0.00 45.78 3.86
2181 2324 7.572523 TCAATAGCCAAAATACAGAGATTGG 57.427 36.000 0.00 0.00 44.09 3.16
2203 2346 6.170506 ACCAAAATTACTAACAGATCGCTCA 58.829 36.000 0.00 0.00 0.00 4.26
2246 2395 6.655003 ACTGTAGGGACATACTTTCATGTTTG 59.345 38.462 0.00 0.00 39.25 2.93
2251 2400 5.186198 GCAACTGTAGGGACATACTTTCAT 58.814 41.667 0.00 0.00 34.24 2.57
2309 2458 4.887071 GGTAGAGAGTGAGAGACATGTCAT 59.113 45.833 27.02 15.39 30.39 3.06
2315 2464 2.240160 GAGGGGTAGAGAGTGAGAGACA 59.760 54.545 0.00 0.00 0.00 3.41
2370 2532 8.109705 TGTGCATTTTCATCTGTACTATGTTT 57.890 30.769 0.00 0.00 0.00 2.83
2375 2537 6.368791 GTGACTGTGCATTTTCATCTGTACTA 59.631 38.462 0.00 0.00 0.00 1.82
2380 2542 3.366679 GGGTGACTGTGCATTTTCATCTG 60.367 47.826 0.00 0.00 0.00 2.90
2386 2548 1.133513 TCTGGGGTGACTGTGCATTTT 60.134 47.619 0.00 0.00 0.00 1.82
2390 2552 2.069430 TGTCTGGGGTGACTGTGCA 61.069 57.895 0.00 0.00 37.79 4.57
2392 2554 1.071471 GGTGTCTGGGGTGACTGTG 59.929 63.158 0.00 0.00 37.79 3.66
2393 2555 2.147387 GGGTGTCTGGGGTGACTGT 61.147 63.158 0.00 0.00 37.79 3.55
2396 2558 2.920912 TCGGGTGTCTGGGGTGAC 60.921 66.667 0.00 0.00 37.47 3.67
2397 2559 2.920912 GTCGGGTGTCTGGGGTGA 60.921 66.667 0.00 0.00 0.00 4.02
2399 2561 2.923035 CAGTCGGGTGTCTGGGGT 60.923 66.667 0.00 0.00 0.00 4.95
2401 2563 3.625897 TGCAGTCGGGTGTCTGGG 61.626 66.667 0.00 0.00 32.71 4.45
2404 2566 1.696097 AAAGGTGCAGTCGGGTGTCT 61.696 55.000 0.00 0.00 0.00 3.41
2405 2567 1.227853 AAAGGTGCAGTCGGGTGTC 60.228 57.895 0.00 0.00 0.00 3.67
2407 2569 1.525995 ACAAAGGTGCAGTCGGGTG 60.526 57.895 0.00 0.00 0.00 4.61
2408 2570 1.525995 CACAAAGGTGCAGTCGGGT 60.526 57.895 0.00 0.00 38.37 5.28
2409 2571 1.227823 TCACAAAGGTGCAGTCGGG 60.228 57.895 0.00 0.00 44.87 5.14
2410 2572 0.249868 TCTCACAAAGGTGCAGTCGG 60.250 55.000 0.00 0.00 44.87 4.79
2411 2573 1.800805 ATCTCACAAAGGTGCAGTCG 58.199 50.000 0.00 0.00 44.87 4.18
2414 2576 2.095364 GCTCAATCTCACAAAGGTGCAG 60.095 50.000 0.00 0.00 44.87 4.41
2417 2579 2.507484 TGGCTCAATCTCACAAAGGTG 58.493 47.619 0.00 0.00 46.66 4.00
2420 2582 3.316029 TGTGTTGGCTCAATCTCACAAAG 59.684 43.478 7.11 0.00 33.81 2.77
2421 2583 3.286353 TGTGTTGGCTCAATCTCACAAA 58.714 40.909 7.11 0.00 33.81 2.83
2422 2584 2.929641 TGTGTTGGCTCAATCTCACAA 58.070 42.857 7.11 0.00 33.81 3.33
2423 2585 2.636647 TGTGTTGGCTCAATCTCACA 57.363 45.000 0.00 0.00 34.23 3.58
2424 2586 3.076621 TGATGTGTTGGCTCAATCTCAC 58.923 45.455 0.00 0.00 0.00 3.51
2426 2588 4.035324 CAGATGATGTGTTGGCTCAATCTC 59.965 45.833 0.00 0.00 0.00 2.75
2427 2589 3.945921 CAGATGATGTGTTGGCTCAATCT 59.054 43.478 0.00 0.00 0.00 2.40
2428 2590 3.943381 TCAGATGATGTGTTGGCTCAATC 59.057 43.478 0.00 0.00 0.00 2.67
2429 2591 3.945921 CTCAGATGATGTGTTGGCTCAAT 59.054 43.478 0.00 0.00 0.00 2.57
2430 2592 3.008266 TCTCAGATGATGTGTTGGCTCAA 59.992 43.478 0.00 0.00 0.00 3.02
2432 2594 3.257469 TCTCAGATGATGTGTTGGCTC 57.743 47.619 0.00 0.00 0.00 4.70
2433 2595 3.928005 ATCTCAGATGATGTGTTGGCT 57.072 42.857 0.00 0.00 0.00 4.75
2435 2597 5.425630 TCTCAATCTCAGATGATGTGTTGG 58.574 41.667 0.00 0.00 0.00 3.77
2436 2598 6.980051 TTCTCAATCTCAGATGATGTGTTG 57.020 37.500 0.00 0.00 0.00 3.33
2437 2599 7.336396 TCATTCTCAATCTCAGATGATGTGTT 58.664 34.615 0.00 0.00 0.00 3.32
2439 2601 7.210873 TCTCATTCTCAATCTCAGATGATGTG 58.789 38.462 0.00 0.00 0.00 3.21
2440 2602 7.362802 TCTCATTCTCAATCTCAGATGATGT 57.637 36.000 0.00 0.00 0.00 3.06
2441 2603 8.716909 CATTCTCATTCTCAATCTCAGATGATG 58.283 37.037 0.00 0.00 0.00 3.07
2442 2604 8.652290 TCATTCTCATTCTCAATCTCAGATGAT 58.348 33.333 0.00 0.00 0.00 2.45
2448 2610 8.674607 CAATGTTCATTCTCATTCTCAATCTCA 58.325 33.333 0.00 0.00 32.85 3.27
2449 2611 7.644551 GCAATGTTCATTCTCATTCTCAATCTC 59.355 37.037 0.00 0.00 32.85 2.75
2450 2612 7.416438 GGCAATGTTCATTCTCATTCTCAATCT 60.416 37.037 0.00 0.00 32.85 2.40
2451 2613 6.696148 GGCAATGTTCATTCTCATTCTCAATC 59.304 38.462 0.00 0.00 32.85 2.67
2452 2614 6.570692 GGCAATGTTCATTCTCATTCTCAAT 58.429 36.000 0.00 0.00 32.85 2.57
2453 2615 5.392272 CGGCAATGTTCATTCTCATTCTCAA 60.392 40.000 0.00 0.00 32.85 3.02
2459 2621 2.947652 CTCCGGCAATGTTCATTCTCAT 59.052 45.455 0.00 0.00 0.00 2.90
2500 2662 2.825836 GCGACCAGCCCATCTTGG 60.826 66.667 0.00 0.00 40.81 3.61
2515 2693 7.641411 CCATAAGTTGACAATTTTAGAGATGCG 59.359 37.037 0.91 0.00 0.00 4.73
2637 2826 6.811170 AGACAACCACAAATGTTTTTACAGTG 59.189 34.615 0.00 0.00 0.00 3.66
2638 2827 6.930731 AGACAACCACAAATGTTTTTACAGT 58.069 32.000 0.00 0.00 0.00 3.55
2642 2831 5.357314 TCCGAGACAACCACAAATGTTTTTA 59.643 36.000 0.00 0.00 0.00 1.52
2690 2880 5.121611 TGCGTGTCGAATCATTTCTTGTAAT 59.878 36.000 0.00 0.00 0.00 1.89
2697 2887 2.527487 GCAATGCGTGTCGAATCATTTC 59.473 45.455 0.00 0.00 0.00 2.17
2700 2890 3.903876 GCAATGCGTGTCGAATCAT 57.096 47.368 0.00 0.00 0.00 2.45
2721 2923 4.379243 CGACCTTGGGAGCAGCGT 62.379 66.667 0.00 0.00 0.00 5.07
2724 2926 0.457851 CTAGACGACCTTGGGAGCAG 59.542 60.000 0.00 0.00 0.00 4.24
2725 2927 0.251653 ACTAGACGACCTTGGGAGCA 60.252 55.000 0.00 0.00 0.00 4.26
2727 2929 1.546961 ACACTAGACGACCTTGGGAG 58.453 55.000 0.00 0.00 0.00 4.30
2728 2930 2.005370 AACACTAGACGACCTTGGGA 57.995 50.000 0.00 0.00 0.00 4.37
2735 2937 5.561873 GTCGTAACTTGTAACACTAGACGAC 59.438 44.000 15.18 15.18 40.57 4.34
2739 2941 7.969536 AGTAGTCGTAACTTGTAACACTAGA 57.030 36.000 0.00 0.00 36.92 2.43
2741 2943 8.285394 CAGAAGTAGTCGTAACTTGTAACACTA 58.715 37.037 4.89 0.00 37.31 2.74
2742 2944 7.137426 CAGAAGTAGTCGTAACTTGTAACACT 58.863 38.462 4.89 0.00 37.31 3.55
2754 3126 3.319972 ACACCTTTGCAGAAGTAGTCGTA 59.680 43.478 7.53 0.00 0.00 3.43
2755 3127 2.102588 ACACCTTTGCAGAAGTAGTCGT 59.897 45.455 7.53 0.00 0.00 4.34
2756 3128 2.755650 ACACCTTTGCAGAAGTAGTCG 58.244 47.619 7.53 0.00 0.00 4.18
2757 3129 3.184581 CGAACACCTTTGCAGAAGTAGTC 59.815 47.826 7.53 0.00 0.00 2.59
2758 3130 3.131396 CGAACACCTTTGCAGAAGTAGT 58.869 45.455 7.53 3.90 0.00 2.73
2759 3131 3.390135 TCGAACACCTTTGCAGAAGTAG 58.610 45.455 7.53 3.45 0.00 2.57
2760 3132 3.181469 ACTCGAACACCTTTGCAGAAGTA 60.181 43.478 7.53 0.00 0.00 2.24
2761 3133 2.213499 CTCGAACACCTTTGCAGAAGT 58.787 47.619 7.53 0.00 0.00 3.01
2762 3134 2.213499 ACTCGAACACCTTTGCAGAAG 58.787 47.619 0.00 0.00 0.00 2.85
2778 3192 3.653344 TGTTGGAGAAACATCTGACTCG 58.347 45.455 0.00 0.00 43.96 4.18
2814 3364 1.486310 TCTGCTGTCAGAACACACCTT 59.514 47.619 3.32 0.00 45.69 3.50
2833 3383 7.040478 TGATCTGAATCTAAGAGCTAGAGCTTC 60.040 40.741 5.33 0.00 41.14 3.86
2834 3384 6.777091 TGATCTGAATCTAAGAGCTAGAGCTT 59.223 38.462 5.33 0.00 41.14 3.74
2835 3385 6.306199 TGATCTGAATCTAAGAGCTAGAGCT 58.694 40.000 3.04 3.04 42.56 4.09
2836 3386 6.573664 TGATCTGAATCTAAGAGCTAGAGC 57.426 41.667 0.00 0.00 40.06 4.09
2837 3387 8.571461 AGATGATCTGAATCTAAGAGCTAGAG 57.429 38.462 0.00 0.00 40.06 2.43
2838 3388 8.385491 AGAGATGATCTGAATCTAAGAGCTAGA 58.615 37.037 0.00 0.00 37.72 2.43
2839 3389 8.571461 AGAGATGATCTGAATCTAAGAGCTAG 57.429 38.462 0.00 0.00 36.69 3.42
2840 3390 8.938801 AAGAGATGATCTGAATCTAAGAGCTA 57.061 34.615 0.00 0.00 38.67 3.32
2841 3391 7.844493 AAGAGATGATCTGAATCTAAGAGCT 57.156 36.000 0.00 0.00 38.67 4.09
2842 3392 8.575589 TGTAAGAGATGATCTGAATCTAAGAGC 58.424 37.037 0.00 0.00 38.67 4.09
2843 3393 9.897744 GTGTAAGAGATGATCTGAATCTAAGAG 57.102 37.037 0.00 0.00 38.67 2.85
2844 3394 9.413734 TGTGTAAGAGATGATCTGAATCTAAGA 57.586 33.333 0.00 0.00 38.67 2.10
2848 3398 9.730705 TTTTTGTGTAAGAGATGATCTGAATCT 57.269 29.630 0.00 0.00 38.67 2.40
2849 3399 9.985318 CTTTTTGTGTAAGAGATGATCTGAATC 57.015 33.333 0.00 0.00 38.67 2.52
2850 3400 8.457261 GCTTTTTGTGTAAGAGATGATCTGAAT 58.543 33.333 0.00 0.00 38.67 2.57
2851 3401 7.360353 CGCTTTTTGTGTAAGAGATGATCTGAA 60.360 37.037 0.00 0.00 38.67 3.02
2852 3402 6.091305 CGCTTTTTGTGTAAGAGATGATCTGA 59.909 38.462 0.00 0.00 38.67 3.27
2853 3403 6.246449 CGCTTTTTGTGTAAGAGATGATCTG 58.754 40.000 0.00 0.00 38.67 2.90
2854 3404 5.352569 CCGCTTTTTGTGTAAGAGATGATCT 59.647 40.000 0.00 0.00 41.27 2.75
2855 3405 5.447818 CCCGCTTTTTGTGTAAGAGATGATC 60.448 44.000 0.00 0.00 0.00 2.92
2856 3406 4.396166 CCCGCTTTTTGTGTAAGAGATGAT 59.604 41.667 0.00 0.00 0.00 2.45
2857 3407 3.751175 CCCGCTTTTTGTGTAAGAGATGA 59.249 43.478 0.00 0.00 0.00 2.92
2858 3408 3.751175 TCCCGCTTTTTGTGTAAGAGATG 59.249 43.478 0.00 0.00 0.00 2.90
2859 3409 4.015872 TCCCGCTTTTTGTGTAAGAGAT 57.984 40.909 0.00 0.00 0.00 2.75
2860 3410 3.478857 TCCCGCTTTTTGTGTAAGAGA 57.521 42.857 0.00 0.00 0.00 3.10
2861 3411 3.670627 GCATCCCGCTTTTTGTGTAAGAG 60.671 47.826 0.00 0.00 37.77 2.85
2862 3412 2.227865 GCATCCCGCTTTTTGTGTAAGA 59.772 45.455 0.00 0.00 37.77 2.10
2863 3413 2.030363 TGCATCCCGCTTTTTGTGTAAG 60.030 45.455 0.00 0.00 43.06 2.34
2864 3414 1.957177 TGCATCCCGCTTTTTGTGTAA 59.043 42.857 0.00 0.00 43.06 2.41
2865 3415 1.610363 TGCATCCCGCTTTTTGTGTA 58.390 45.000 0.00 0.00 43.06 2.90
2866 3416 0.749649 TTGCATCCCGCTTTTTGTGT 59.250 45.000 0.00 0.00 43.06 3.72
2867 3417 2.083167 ATTGCATCCCGCTTTTTGTG 57.917 45.000 0.00 0.00 43.06 3.33
2868 3418 2.224257 ACAATTGCATCCCGCTTTTTGT 60.224 40.909 5.05 0.00 43.06 2.83
2869 3419 2.412770 GACAATTGCATCCCGCTTTTTG 59.587 45.455 5.05 0.00 43.06 2.44
2870 3420 2.299867 AGACAATTGCATCCCGCTTTTT 59.700 40.909 5.05 0.00 43.06 1.94
2871 3421 1.895131 AGACAATTGCATCCCGCTTTT 59.105 42.857 5.05 0.00 43.06 2.27
2872 3422 1.549203 AGACAATTGCATCCCGCTTT 58.451 45.000 5.05 0.00 43.06 3.51
2873 3423 1.203052 CAAGACAATTGCATCCCGCTT 59.797 47.619 5.05 0.00 43.06 4.68
2874 3424 0.813184 CAAGACAATTGCATCCCGCT 59.187 50.000 5.05 0.00 43.06 5.52
2875 3425 0.527565 ACAAGACAATTGCATCCCGC 59.472 50.000 5.05 0.00 42.89 6.13
2876 3426 4.637483 ATAACAAGACAATTGCATCCCG 57.363 40.909 5.05 0.00 0.00 5.14
2877 3427 7.547227 AGTTAATAACAAGACAATTGCATCCC 58.453 34.615 5.05 0.00 0.00 3.85
2878 3428 8.462016 AGAGTTAATAACAAGACAATTGCATCC 58.538 33.333 5.05 0.00 0.00 3.51
2879 3429 9.282247 CAGAGTTAATAACAAGACAATTGCATC 57.718 33.333 5.05 0.00 0.00 3.91
2880 3430 9.013229 TCAGAGTTAATAACAAGACAATTGCAT 57.987 29.630 5.05 0.00 0.00 3.96
2881 3431 8.389779 TCAGAGTTAATAACAAGACAATTGCA 57.610 30.769 5.05 0.00 0.00 4.08
2899 3449 9.689976 CTCGATCACTTTCATATTATCAGAGTT 57.310 33.333 0.00 0.00 0.00 3.01
2900 3450 9.072375 TCTCGATCACTTTCATATTATCAGAGT 57.928 33.333 0.00 0.00 0.00 3.24
2901 3451 9.340695 GTCTCGATCACTTTCATATTATCAGAG 57.659 37.037 0.00 0.00 0.00 3.35
2902 3452 8.850156 TGTCTCGATCACTTTCATATTATCAGA 58.150 33.333 0.00 0.00 0.00 3.27
2903 3453 9.468532 TTGTCTCGATCACTTTCATATTATCAG 57.531 33.333 0.00 0.00 0.00 2.90
2904 3454 9.987272 ATTGTCTCGATCACTTTCATATTATCA 57.013 29.630 0.00 0.00 0.00 2.15
2906 3456 9.987272 TCATTGTCTCGATCACTTTCATATTAT 57.013 29.630 0.00 0.00 0.00 1.28
2907 3457 9.816354 TTCATTGTCTCGATCACTTTCATATTA 57.184 29.630 0.00 0.00 0.00 0.98
2908 3458 8.722480 TTCATTGTCTCGATCACTTTCATATT 57.278 30.769 0.00 0.00 0.00 1.28
2909 3459 8.200120 TCTTCATTGTCTCGATCACTTTCATAT 58.800 33.333 0.00 0.00 0.00 1.78
2910 3460 7.547227 TCTTCATTGTCTCGATCACTTTCATA 58.453 34.615 0.00 0.00 0.00 2.15
2911 3461 6.401394 TCTTCATTGTCTCGATCACTTTCAT 58.599 36.000 0.00 0.00 0.00 2.57
2912 3462 5.783111 TCTTCATTGTCTCGATCACTTTCA 58.217 37.500 0.00 0.00 0.00 2.69
2913 3463 6.712241 TTCTTCATTGTCTCGATCACTTTC 57.288 37.500 0.00 0.00 0.00 2.62
2914 3464 6.346919 CGTTTCTTCATTGTCTCGATCACTTT 60.347 38.462 0.00 0.00 0.00 2.66
2915 3465 5.119279 CGTTTCTTCATTGTCTCGATCACTT 59.881 40.000 0.00 0.00 0.00 3.16
2916 3466 4.623167 CGTTTCTTCATTGTCTCGATCACT 59.377 41.667 0.00 0.00 0.00 3.41
2917 3467 4.201628 CCGTTTCTTCATTGTCTCGATCAC 60.202 45.833 0.00 0.00 0.00 3.06
2918 3468 3.926527 CCGTTTCTTCATTGTCTCGATCA 59.073 43.478 0.00 0.00 0.00 2.92
2919 3469 3.927142 ACCGTTTCTTCATTGTCTCGATC 59.073 43.478 0.00 0.00 0.00 3.69
2920 3470 3.926616 ACCGTTTCTTCATTGTCTCGAT 58.073 40.909 0.00 0.00 0.00 3.59
2921 3471 3.005472 AGACCGTTTCTTCATTGTCTCGA 59.995 43.478 0.00 0.00 0.00 4.04
2922 3472 3.121944 CAGACCGTTTCTTCATTGTCTCG 59.878 47.826 0.00 0.00 31.08 4.04
2923 3473 3.120511 GCAGACCGTTTCTTCATTGTCTC 60.121 47.826 0.00 0.00 31.08 3.36
2924 3474 2.808543 GCAGACCGTTTCTTCATTGTCT 59.191 45.455 0.00 0.00 33.59 3.41
2925 3475 2.411547 CGCAGACCGTTTCTTCATTGTC 60.412 50.000 0.00 0.00 28.96 3.18
2926 3476 1.531149 CGCAGACCGTTTCTTCATTGT 59.469 47.619 0.00 0.00 28.96 2.71
2927 3477 1.135972 CCGCAGACCGTTTCTTCATTG 60.136 52.381 0.00 0.00 34.38 2.82
2928 3478 1.156736 CCGCAGACCGTTTCTTCATT 58.843 50.000 0.00 0.00 34.38 2.57
2929 3479 0.673644 CCCGCAGACCGTTTCTTCAT 60.674 55.000 0.00 0.00 34.38 2.57
2930 3480 1.301401 CCCGCAGACCGTTTCTTCA 60.301 57.895 0.00 0.00 34.38 3.02
2931 3481 1.005394 TCCCGCAGACCGTTTCTTC 60.005 57.895 0.00 0.00 34.38 2.87
2932 3482 1.004918 CTCCCGCAGACCGTTTCTT 60.005 57.895 0.00 0.00 34.38 2.52
2933 3483 1.878656 CTCTCCCGCAGACCGTTTCT 61.879 60.000 0.00 0.00 34.38 2.52
2934 3484 1.446272 CTCTCCCGCAGACCGTTTC 60.446 63.158 0.00 0.00 34.38 2.78
2935 3485 2.657237 CTCTCCCGCAGACCGTTT 59.343 61.111 0.00 0.00 34.38 3.60
2936 3486 3.382832 CCTCTCCCGCAGACCGTT 61.383 66.667 0.00 0.00 34.38 4.44
2940 3490 4.500116 GACGCCTCTCCCGCAGAC 62.500 72.222 0.00 0.00 0.00 3.51
2947 3497 4.803426 CACTGCCGACGCCTCTCC 62.803 72.222 0.00 0.00 0.00 3.71
2948 3498 3.575351 AACACTGCCGACGCCTCTC 62.575 63.158 0.00 0.00 0.00 3.20
2949 3499 3.165160 AAACACTGCCGACGCCTCT 62.165 57.895 0.00 0.00 0.00 3.69
2950 3500 2.665185 AAACACTGCCGACGCCTC 60.665 61.111 0.00 0.00 0.00 4.70
2951 3501 2.972505 CAAACACTGCCGACGCCT 60.973 61.111 0.00 0.00 0.00 5.52
2952 3502 2.970324 TCAAACACTGCCGACGCC 60.970 61.111 0.00 0.00 0.00 5.68
2953 3503 2.248431 GTCAAACACTGCCGACGC 59.752 61.111 0.00 0.00 0.00 5.19
2954 3504 2.544359 CGTCAAACACTGCCGACG 59.456 61.111 0.00 0.00 44.34 5.12
2955 3505 0.865769 AATCGTCAAACACTGCCGAC 59.134 50.000 0.00 0.00 0.00 4.79
2956 3506 0.865111 CAATCGTCAAACACTGCCGA 59.135 50.000 0.00 0.00 0.00 5.54
2957 3507 0.725784 GCAATCGTCAAACACTGCCG 60.726 55.000 0.00 0.00 0.00 5.69
2958 3508 0.593128 AGCAATCGTCAAACACTGCC 59.407 50.000 0.00 0.00 0.00 4.85
2959 3509 3.747099 ATAGCAATCGTCAAACACTGC 57.253 42.857 0.00 0.00 0.00 4.40
2960 3510 6.991485 AAAAATAGCAATCGTCAAACACTG 57.009 33.333 0.00 0.00 0.00 3.66
2980 3530 6.731467 AGAGGGAAGATATACAAGCCAAAAA 58.269 36.000 0.00 0.00 0.00 1.94
2981 3531 6.069673 TGAGAGGGAAGATATACAAGCCAAAA 60.070 38.462 0.00 0.00 0.00 2.44
2982 3532 5.428457 TGAGAGGGAAGATATACAAGCCAAA 59.572 40.000 0.00 0.00 0.00 3.28
2983 3533 4.968719 TGAGAGGGAAGATATACAAGCCAA 59.031 41.667 0.00 0.00 0.00 4.52
2984 3534 4.556697 TGAGAGGGAAGATATACAAGCCA 58.443 43.478 0.00 0.00 0.00 4.75
2985 3535 5.753721 ATGAGAGGGAAGATATACAAGCC 57.246 43.478 0.00 0.00 0.00 4.35
2986 3536 7.902087 ACTAATGAGAGGGAAGATATACAAGC 58.098 38.462 0.00 0.00 0.00 4.01
2987 3537 9.308000 AGACTAATGAGAGGGAAGATATACAAG 57.692 37.037 0.00 0.00 0.00 3.16
2988 3538 9.661954 AAGACTAATGAGAGGGAAGATATACAA 57.338 33.333 0.00 0.00 0.00 2.41
2993 3543 9.488762 TGTTTAAGACTAATGAGAGGGAAGATA 57.511 33.333 0.00 0.00 0.00 1.98
2994 3544 8.380742 TGTTTAAGACTAATGAGAGGGAAGAT 57.619 34.615 0.00 0.00 0.00 2.40
2995 3545 7.792364 TGTTTAAGACTAATGAGAGGGAAGA 57.208 36.000 0.00 0.00 0.00 2.87
2996 3546 8.887717 CAATGTTTAAGACTAATGAGAGGGAAG 58.112 37.037 0.00 0.00 0.00 3.46
2997 3547 8.383175 ACAATGTTTAAGACTAATGAGAGGGAA 58.617 33.333 0.00 0.00 0.00 3.97
2998 3548 7.918076 ACAATGTTTAAGACTAATGAGAGGGA 58.082 34.615 0.00 0.00 0.00 4.20
2999 3549 9.667107 TTACAATGTTTAAGACTAATGAGAGGG 57.333 33.333 0.00 0.00 0.00 4.30
3008 3558 9.609346 GCTTCCCTATTACAATGTTTAAGACTA 57.391 33.333 0.00 0.00 0.00 2.59
3009 3559 7.280205 CGCTTCCCTATTACAATGTTTAAGACT 59.720 37.037 0.00 0.00 0.00 3.24
3010 3560 7.279313 TCGCTTCCCTATTACAATGTTTAAGAC 59.721 37.037 0.00 0.00 0.00 3.01
3011 3561 7.332557 TCGCTTCCCTATTACAATGTTTAAGA 58.667 34.615 0.00 0.00 0.00 2.10
3012 3562 7.548196 TCGCTTCCCTATTACAATGTTTAAG 57.452 36.000 0.00 0.00 0.00 1.85
3013 3563 7.925043 TTCGCTTCCCTATTACAATGTTTAA 57.075 32.000 0.00 0.00 0.00 1.52
3014 3564 9.787435 ATATTCGCTTCCCTATTACAATGTTTA 57.213 29.630 0.00 0.00 0.00 2.01
3015 3565 8.567948 CATATTCGCTTCCCTATTACAATGTTT 58.432 33.333 0.00 0.00 0.00 2.83
3016 3566 7.936847 TCATATTCGCTTCCCTATTACAATGTT 59.063 33.333 0.00 0.00 0.00 2.71
3017 3567 7.450074 TCATATTCGCTTCCCTATTACAATGT 58.550 34.615 0.00 0.00 0.00 2.71
3018 3568 7.905604 TCATATTCGCTTCCCTATTACAATG 57.094 36.000 0.00 0.00 0.00 2.82
3019 3569 8.950210 CAATCATATTCGCTTCCCTATTACAAT 58.050 33.333 0.00 0.00 0.00 2.71
3020 3570 7.094805 GCAATCATATTCGCTTCCCTATTACAA 60.095 37.037 0.00 0.00 0.00 2.41
3021 3571 6.371548 GCAATCATATTCGCTTCCCTATTACA 59.628 38.462 0.00 0.00 0.00 2.41
3022 3572 6.595716 AGCAATCATATTCGCTTCCCTATTAC 59.404 38.462 0.00 0.00 0.00 1.89
3023 3573 6.711277 AGCAATCATATTCGCTTCCCTATTA 58.289 36.000 0.00 0.00 0.00 0.98
3024 3574 5.564550 AGCAATCATATTCGCTTCCCTATT 58.435 37.500 0.00 0.00 0.00 1.73
3025 3575 5.171339 AGCAATCATATTCGCTTCCCTAT 57.829 39.130 0.00 0.00 0.00 2.57
3026 3576 4.040339 TGAGCAATCATATTCGCTTCCCTA 59.960 41.667 0.00 0.00 34.12 3.53
3027 3577 3.181451 TGAGCAATCATATTCGCTTCCCT 60.181 43.478 0.00 0.00 34.12 4.20
3028 3578 3.141398 TGAGCAATCATATTCGCTTCCC 58.859 45.455 0.00 0.00 34.12 3.97
3029 3579 4.453478 TCATGAGCAATCATATTCGCTTCC 59.547 41.667 0.00 0.00 34.12 3.46
3030 3580 5.602458 TCATGAGCAATCATATTCGCTTC 57.398 39.130 0.00 0.00 34.12 3.86
3031 3581 6.381481 TTTCATGAGCAATCATATTCGCTT 57.619 33.333 0.00 0.00 34.12 4.68
3032 3582 6.570672 ATTTCATGAGCAATCATATTCGCT 57.429 33.333 0.00 0.00 37.44 4.93
3033 3583 6.399669 GCAATTTCATGAGCAATCATATTCGC 60.400 38.462 0.00 0.00 0.00 4.70
3034 3584 6.861572 AGCAATTTCATGAGCAATCATATTCG 59.138 34.615 7.34 0.00 0.00 3.34
3035 3585 9.343103 CTAGCAATTTCATGAGCAATCATATTC 57.657 33.333 7.34 0.00 0.00 1.75
3036 3586 8.304596 CCTAGCAATTTCATGAGCAATCATATT 58.695 33.333 7.34 0.00 0.00 1.28
3037 3587 7.577046 GCCTAGCAATTTCATGAGCAATCATAT 60.577 37.037 7.34 0.00 0.00 1.78
3038 3588 6.294342 GCCTAGCAATTTCATGAGCAATCATA 60.294 38.462 7.34 0.00 0.00 2.15
3039 3589 5.509163 GCCTAGCAATTTCATGAGCAATCAT 60.509 40.000 7.34 0.00 0.00 2.45
3040 3590 4.202080 GCCTAGCAATTTCATGAGCAATCA 60.202 41.667 7.34 0.00 0.00 2.57
3041 3591 4.037684 AGCCTAGCAATTTCATGAGCAATC 59.962 41.667 7.34 0.00 0.00 2.67
3042 3592 3.958798 AGCCTAGCAATTTCATGAGCAAT 59.041 39.130 7.34 0.00 0.00 3.56
3043 3593 3.359033 AGCCTAGCAATTTCATGAGCAA 58.641 40.909 7.34 0.00 0.00 3.91
3044 3594 3.008835 AGCCTAGCAATTTCATGAGCA 57.991 42.857 7.34 0.00 0.00 4.26
3045 3595 4.745837 CTAGCCTAGCAATTTCATGAGC 57.254 45.455 0.00 0.00 0.00 4.26
3058 3608 5.314923 TGCAGAAAATTTTGCTAGCCTAG 57.685 39.130 13.29 0.00 40.87 3.02
3059 3609 5.010516 TGTTGCAGAAAATTTTGCTAGCCTA 59.989 36.000 13.29 0.00 40.87 3.93
3060 3610 4.202243 TGTTGCAGAAAATTTTGCTAGCCT 60.202 37.500 13.29 0.00 40.87 4.58
3061 3611 4.057432 TGTTGCAGAAAATTTTGCTAGCC 58.943 39.130 13.29 0.00 40.87 3.93
3062 3612 5.655893 TTGTTGCAGAAAATTTTGCTAGC 57.344 34.783 8.47 8.10 40.87 3.42
3063 3613 8.553696 AGAATTTGTTGCAGAAAATTTTGCTAG 58.446 29.630 8.47 0.00 40.87 3.42
3064 3614 8.436046 AGAATTTGTTGCAGAAAATTTTGCTA 57.564 26.923 8.47 1.42 40.87 3.49
3065 3615 7.324354 AGAATTTGTTGCAGAAAATTTTGCT 57.676 28.000 8.47 10.59 40.87 3.91
3066 3616 7.043920 CCAAGAATTTGTTGCAGAAAATTTTGC 60.044 33.333 8.47 8.04 36.40 3.68
3067 3617 7.969508 ACCAAGAATTTGTTGCAGAAAATTTTG 59.030 29.630 8.47 18.97 36.40 2.44
3068 3618 8.054152 ACCAAGAATTTGTTGCAGAAAATTTT 57.946 26.923 17.50 2.28 36.40 1.82
3069 3619 7.628769 ACCAAGAATTTGTTGCAGAAAATTT 57.371 28.000 17.50 8.92 36.40 1.82
3070 3620 7.628769 AACCAAGAATTTGTTGCAGAAAATT 57.371 28.000 16.80 16.80 38.39 1.82
3071 3621 7.336427 TCAAACCAAGAATTTGTTGCAGAAAAT 59.664 29.630 0.88 3.52 38.08 1.82
3072 3622 6.652481 TCAAACCAAGAATTTGTTGCAGAAAA 59.348 30.769 0.88 0.00 38.08 2.29
3073 3623 6.169094 TCAAACCAAGAATTTGTTGCAGAAA 58.831 32.000 0.88 0.00 38.08 2.52
3074 3624 5.728471 TCAAACCAAGAATTTGTTGCAGAA 58.272 33.333 0.88 0.00 38.08 3.02
3075 3625 5.336150 TCAAACCAAGAATTTGTTGCAGA 57.664 34.783 0.88 0.00 38.08 4.26
3076 3626 4.508861 CCTCAAACCAAGAATTTGTTGCAG 59.491 41.667 0.88 0.00 38.08 4.41
3077 3627 4.161189 TCCTCAAACCAAGAATTTGTTGCA 59.839 37.500 0.88 0.00 38.08 4.08
3078 3628 4.692228 TCCTCAAACCAAGAATTTGTTGC 58.308 39.130 0.88 0.00 38.08 4.17
3079 3629 4.746611 GCTCCTCAAACCAAGAATTTGTTG 59.253 41.667 0.00 0.00 38.08 3.33
3080 3630 4.202253 GGCTCCTCAAACCAAGAATTTGTT 60.202 41.667 0.00 0.00 38.08 2.83
3081 3631 3.321968 GGCTCCTCAAACCAAGAATTTGT 59.678 43.478 0.00 0.00 38.08 2.83
3082 3632 3.612479 CGGCTCCTCAAACCAAGAATTTG 60.612 47.826 0.00 0.00 38.21 2.32
3083 3633 2.558359 CGGCTCCTCAAACCAAGAATTT 59.442 45.455 0.00 0.00 0.00 1.82
3084 3634 2.162681 CGGCTCCTCAAACCAAGAATT 58.837 47.619 0.00 0.00 0.00 2.17
3085 3635 1.351017 TCGGCTCCTCAAACCAAGAAT 59.649 47.619 0.00 0.00 0.00 2.40
3086 3636 0.762418 TCGGCTCCTCAAACCAAGAA 59.238 50.000 0.00 0.00 0.00 2.52
3087 3637 0.984230 ATCGGCTCCTCAAACCAAGA 59.016 50.000 0.00 0.00 0.00 3.02
3088 3638 1.089920 CATCGGCTCCTCAAACCAAG 58.910 55.000 0.00 0.00 0.00 3.61
3089 3639 0.322456 CCATCGGCTCCTCAAACCAA 60.322 55.000 0.00 0.00 0.00 3.67
3090 3640 1.198094 TCCATCGGCTCCTCAAACCA 61.198 55.000 0.00 0.00 0.00 3.67
3091 3641 0.744771 GTCCATCGGCTCCTCAAACC 60.745 60.000 0.00 0.00 0.00 3.27
3092 3642 1.084370 CGTCCATCGGCTCCTCAAAC 61.084 60.000 0.00 0.00 35.71 2.93
3093 3643 1.218047 CGTCCATCGGCTCCTCAAA 59.782 57.895 0.00 0.00 35.71 2.69
3094 3644 1.043116 ATCGTCCATCGGCTCCTCAA 61.043 55.000 0.00 0.00 40.32 3.02
3095 3645 0.179001 TATCGTCCATCGGCTCCTCA 60.179 55.000 0.00 0.00 40.32 3.86
3096 3646 1.178276 ATATCGTCCATCGGCTCCTC 58.822 55.000 0.00 0.00 40.32 3.71
3097 3647 1.273606 CAATATCGTCCATCGGCTCCT 59.726 52.381 0.00 0.00 40.32 3.69
3098 3648 1.000955 ACAATATCGTCCATCGGCTCC 59.999 52.381 0.00 0.00 40.32 4.70
3099 3649 2.440539 ACAATATCGTCCATCGGCTC 57.559 50.000 0.00 0.00 40.32 4.70
3100 3650 3.069016 TGTTACAATATCGTCCATCGGCT 59.931 43.478 0.00 0.00 40.32 5.52
3101 3651 3.183775 GTGTTACAATATCGTCCATCGGC 59.816 47.826 0.00 0.00 40.32 5.54
3102 3652 4.617959 AGTGTTACAATATCGTCCATCGG 58.382 43.478 0.00 0.00 40.32 4.18



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.