Multiple sequence alignment - TraesCS3A01G267800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G267800 chr3A 100.000 2445 0 0 1 2445 493559176 493561620 0.000000e+00 4516.0
1 TraesCS3A01G267800 chr3A 89.221 1271 101 6 734 1985 678042622 678041369 0.000000e+00 1555.0
2 TraesCS3A01G267800 chr3A 89.451 455 48 0 1987 2441 351163841 351163387 2.110000e-160 575.0
3 TraesCS3A01G267800 chr2A 90.918 1971 145 10 3 1952 188605218 188607175 0.000000e+00 2617.0
4 TraesCS3A01G267800 chr2B 90.247 1743 121 20 267 1984 763316730 763315012 0.000000e+00 2231.0
5 TraesCS3A01G267800 chr5D 91.067 1668 112 11 337 1984 399707064 399705414 0.000000e+00 2220.0
6 TraesCS3A01G267800 chr5D 88.889 459 51 0 1987 2445 515495026 515494568 1.270000e-157 566.0
7 TraesCS3A01G267800 chr5D 93.750 336 19 2 7 340 399709076 399708741 1.010000e-138 503.0
8 TraesCS3A01G267800 chr5D 84.874 119 13 4 128 241 554362616 554362734 5.520000e-22 115.0
9 TraesCS3A01G267800 chr5A 90.547 1682 134 10 315 1974 288890124 288891802 0.000000e+00 2202.0
10 TraesCS3A01G267800 chr5A 94.007 267 12 3 1 264 611696469 611696734 3.790000e-108 401.0
11 TraesCS3A01G267800 chr1B 89.085 1759 135 21 267 1988 97809622 97807884 0.000000e+00 2132.0
12 TraesCS3A01G267800 chr1B 89.296 1093 104 7 896 1984 64751017 64752100 0.000000e+00 1358.0
13 TraesCS3A01G267800 chr1B 95.833 48 2 0 4 51 97809698 97809651 7.250000e-11 78.7
14 TraesCS3A01G267800 chr1A 89.614 1608 146 4 266 1853 145814974 145813368 0.000000e+00 2025.0
15 TraesCS3A01G267800 chr1A 90.183 438 38 4 670 1104 523755072 523754637 1.270000e-157 566.0
16 TraesCS3A01G267800 chr7B 89.727 1392 118 11 315 1683 694526886 694525497 0.000000e+00 1755.0
17 TraesCS3A01G267800 chr7B 89.728 1178 103 4 693 1853 747107424 747108600 0.000000e+00 1489.0
18 TraesCS3A01G267800 chr4D 90.146 1299 93 7 693 1974 46138595 46137315 0.000000e+00 1657.0
19 TraesCS3A01G267800 chr2D 88.872 1312 83 30 693 1984 582871608 582872876 0.000000e+00 1555.0
20 TraesCS3A01G267800 chr2D 89.542 459 48 0 1987 2445 568142202 568141744 1.260000e-162 582.0
21 TraesCS3A01G267800 chr2D 88.889 459 51 0 1987 2445 458120502 458120044 1.270000e-157 566.0
22 TraesCS3A01G267800 chr6B 88.512 1297 120 8 711 1985 148307041 148305752 0.000000e+00 1543.0
23 TraesCS3A01G267800 chr6B 92.164 536 39 3 315 847 270898240 270898775 0.000000e+00 754.0
24 TraesCS3A01G267800 chr1D 89.890 455 46 0 1985 2439 48444429 48444883 9.740000e-164 586.0
25 TraesCS3A01G267800 chr1D 88.720 461 52 0 1985 2445 122464388 122464848 4.560000e-157 564.0
26 TraesCS3A01G267800 chr7D 89.325 459 49 0 1987 2445 588124109 588123651 5.860000e-161 577.0
27 TraesCS3A01G267800 chr7D 94.340 53 3 0 266 318 497197298 497197246 5.600000e-12 82.4
28 TraesCS3A01G267800 chr3D 88.937 461 51 0 1985 2445 402417466 402417006 9.810000e-159 569.0
29 TraesCS3A01G267800 chr6D 88.889 459 51 0 1987 2445 147089217 147088759 1.270000e-157 566.0
30 TraesCS3A01G267800 chrUn 89.954 438 42 1 257 692 381946804 381947241 4.560000e-157 564.0
31 TraesCS3A01G267800 chr4A 87.600 250 22 4 1 241 614242426 614242177 5.150000e-72 281.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G267800 chr3A 493559176 493561620 2444 False 4516.00 4516 100.0000 1 2445 1 chr3A.!!$F1 2444
1 TraesCS3A01G267800 chr3A 678041369 678042622 1253 True 1555.00 1555 89.2210 734 1985 1 chr3A.!!$R2 1251
2 TraesCS3A01G267800 chr2A 188605218 188607175 1957 False 2617.00 2617 90.9180 3 1952 1 chr2A.!!$F1 1949
3 TraesCS3A01G267800 chr2B 763315012 763316730 1718 True 2231.00 2231 90.2470 267 1984 1 chr2B.!!$R1 1717
4 TraesCS3A01G267800 chr5D 399705414 399709076 3662 True 1361.50 2220 92.4085 7 1984 2 chr5D.!!$R2 1977
5 TraesCS3A01G267800 chr5A 288890124 288891802 1678 False 2202.00 2202 90.5470 315 1974 1 chr5A.!!$F1 1659
6 TraesCS3A01G267800 chr1B 64751017 64752100 1083 False 1358.00 1358 89.2960 896 1984 1 chr1B.!!$F1 1088
7 TraesCS3A01G267800 chr1B 97807884 97809698 1814 True 1105.35 2132 92.4590 4 1988 2 chr1B.!!$R1 1984
8 TraesCS3A01G267800 chr1A 145813368 145814974 1606 True 2025.00 2025 89.6140 266 1853 1 chr1A.!!$R1 1587
9 TraesCS3A01G267800 chr7B 694525497 694526886 1389 True 1755.00 1755 89.7270 315 1683 1 chr7B.!!$R1 1368
10 TraesCS3A01G267800 chr7B 747107424 747108600 1176 False 1489.00 1489 89.7280 693 1853 1 chr7B.!!$F1 1160
11 TraesCS3A01G267800 chr4D 46137315 46138595 1280 True 1657.00 1657 90.1460 693 1974 1 chr4D.!!$R1 1281
12 TraesCS3A01G267800 chr2D 582871608 582872876 1268 False 1555.00 1555 88.8720 693 1984 1 chr2D.!!$F1 1291
13 TraesCS3A01G267800 chr6B 148305752 148307041 1289 True 1543.00 1543 88.5120 711 1985 1 chr6B.!!$R1 1274
14 TraesCS3A01G267800 chr6B 270898240 270898775 535 False 754.00 754 92.1640 315 847 1 chr6B.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 2529 0.333993 AATGCTGAGCCATGTTCCCT 59.666 50.0 0.23 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 3981 0.034896 GTGGACGAGGCTTTTCAGGA 59.965 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.022764 TGTGTACATGATCCCAAGCG 57.977 50.000 0.00 0.00 0.00 4.68
92 93 7.994911 TGTAGTTTAGCATGGATTGATGATCTT 59.005 33.333 0.00 0.00 35.02 2.40
165 166 3.077359 AGCAGTTGATTTCACCTGTAGC 58.923 45.455 6.92 0.00 38.46 3.58
166 167 2.813754 GCAGTTGATTTCACCTGTAGCA 59.186 45.455 6.92 0.00 38.46 3.49
193 194 4.952262 ACTTGAAATGTGATGATCCACG 57.048 40.909 0.00 0.00 39.80 4.94
197 198 2.112380 AATGTGATGATCCACGTGCA 57.888 45.000 10.91 3.03 39.80 4.57
235 237 4.871871 TGGTATTCTTGGATTTGCCCTA 57.128 40.909 0.00 0.00 34.97 3.53
264 266 8.714179 TCCGGTTAAGATAATATGTTAAATGCG 58.286 33.333 0.00 0.00 31.01 4.73
375 2057 4.868734 GTCTACCTACCGGATTCAGTTTTG 59.131 45.833 9.46 0.00 0.00 2.44
430 2112 6.852420 TCATTAGTACAAACCTGCTCTACT 57.148 37.500 0.00 0.00 0.00 2.57
480 2164 2.875296 AGCAGTTTTGGGCATTGTCTA 58.125 42.857 0.00 0.00 0.00 2.59
481 2165 2.821969 AGCAGTTTTGGGCATTGTCTAG 59.178 45.455 0.00 0.00 0.00 2.43
539 2223 1.327303 GGCAACAGGTGGTCAATCAA 58.673 50.000 0.00 0.00 0.00 2.57
545 2229 3.412386 ACAGGTGGTCAATCAAGTTAGC 58.588 45.455 0.00 0.00 0.00 3.09
549 2233 4.702131 AGGTGGTCAATCAAGTTAGCATTC 59.298 41.667 0.00 0.00 0.00 2.67
588 2272 6.043243 TCCATCCCCTCTCATAGTAAATTCAC 59.957 42.308 0.00 0.00 0.00 3.18
624 2309 0.485099 ACCCCCTTGCATAAACACCA 59.515 50.000 0.00 0.00 0.00 4.17
658 2343 4.445453 CCATATGTACAAGAAGCAGAGCA 58.555 43.478 0.00 0.00 0.00 4.26
708 2394 4.669700 AGGTAGTAATGTTTGGGTTTCCC 58.330 43.478 0.00 0.00 45.71 3.97
719 2405 2.976099 GGTTTCCCCCAAGGATGTG 58.024 57.895 0.00 0.00 46.94 3.21
842 2528 1.188863 AAATGCTGAGCCATGTTCCC 58.811 50.000 0.23 0.00 0.00 3.97
843 2529 0.333993 AATGCTGAGCCATGTTCCCT 59.666 50.000 0.23 0.00 0.00 4.20
848 2534 2.353109 GCTGAGCCATGTTCCCTTTTTC 60.353 50.000 0.00 0.00 0.00 2.29
851 2537 3.966665 TGAGCCATGTTCCCTTTTTCTTT 59.033 39.130 0.00 0.00 0.00 2.52
911 2613 4.326826 TGCTCCTTGTCTTTTTCATCGAT 58.673 39.130 0.00 0.00 0.00 3.59
920 2622 3.559655 TCTTTTTCATCGATATGCACCGG 59.440 43.478 0.00 0.00 32.76 5.28
930 2632 7.604545 TCATCGATATGCACCGGATTATTTTTA 59.395 33.333 9.46 0.00 32.76 1.52
1005 2716 0.618458 GGGTTCTAGTGGTGATGCCA 59.382 55.000 0.00 0.00 46.95 4.92
1062 2773 0.322975 GGCTGCCGATGTATGGAGAT 59.677 55.000 1.35 0.00 0.00 2.75
1069 2780 2.029918 CCGATGTATGGAGATGCGAAGA 60.030 50.000 0.00 0.00 0.00 2.87
1072 2783 4.564041 GATGTATGGAGATGCGAAGATGT 58.436 43.478 0.00 0.00 0.00 3.06
1075 2786 2.028420 TGGAGATGCGAAGATGTTGG 57.972 50.000 0.00 0.00 0.00 3.77
1294 3007 3.782443 GACATCGACCGGGGCCTT 61.782 66.667 6.32 0.00 0.00 4.35
1305 3018 1.380302 GGGGCCTTCTTGAGCTGAA 59.620 57.895 0.84 0.00 0.00 3.02
1375 3088 2.426023 GGTCCAGTGTGGCTCGTT 59.574 61.111 0.00 0.00 37.47 3.85
1403 3116 1.570813 CCGCTATGTTTCATCGCAGA 58.429 50.000 6.95 0.00 45.75 4.26
1547 3260 1.885887 GCATGGCAAGAACCACTTACA 59.114 47.619 0.00 0.00 44.17 2.41
1671 3391 6.767902 AGATACGGCAATTGTGTGATAGAATT 59.232 34.615 7.40 0.00 32.93 2.17
1724 3449 8.418597 TCTAATAAGTTAGTAGTAGCATGGGG 57.581 38.462 15.08 0.00 38.72 4.96
1811 3538 2.795175 TCATTAGTAGTAGCGCAGGC 57.205 50.000 11.47 0.00 40.37 4.85
1871 3616 6.275335 ACTAACAAAGTTAGTAGTTGCACGA 58.725 36.000 18.09 0.00 33.35 4.35
1889 3635 1.990563 CGAGTTTAACCCACGCTACTG 59.009 52.381 0.00 0.00 0.00 2.74
1985 3734 5.008911 GCTAGTAGCCTTTCCTAGTAGTGAC 59.991 48.000 11.33 0.00 40.80 3.67
1987 3736 5.581975 AGTAGCCTTTCCTAGTAGTGACTT 58.418 41.667 0.00 0.00 37.10 3.01
1988 3737 5.653330 AGTAGCCTTTCCTAGTAGTGACTTC 59.347 44.000 0.00 0.00 37.10 3.01
1989 3738 4.679331 AGCCTTTCCTAGTAGTGACTTCT 58.321 43.478 0.00 0.00 37.10 2.85
1990 3739 5.088026 AGCCTTTCCTAGTAGTGACTTCTT 58.912 41.667 0.00 0.00 37.10 2.52
1991 3740 5.046950 AGCCTTTCCTAGTAGTGACTTCTTG 60.047 44.000 0.00 0.00 37.10 3.02
1992 3741 5.725362 CCTTTCCTAGTAGTGACTTCTTGG 58.275 45.833 12.15 12.15 37.10 3.61
1993 3742 4.803098 TTCCTAGTAGTGACTTCTTGGC 57.197 45.455 13.23 0.00 37.10 4.52
1994 3743 2.753452 TCCTAGTAGTGACTTCTTGGCG 59.247 50.000 13.23 0.00 37.10 5.69
1995 3744 2.159226 CCTAGTAGTGACTTCTTGGCGG 60.159 54.545 6.76 0.00 37.10 6.13
1996 3745 1.339097 AGTAGTGACTTCTTGGCGGT 58.661 50.000 0.00 0.00 28.61 5.68
1997 3746 2.522185 AGTAGTGACTTCTTGGCGGTA 58.478 47.619 0.00 0.00 28.61 4.02
1998 3747 2.895404 AGTAGTGACTTCTTGGCGGTAA 59.105 45.455 0.00 0.00 28.61 2.85
1999 3748 2.922740 AGTGACTTCTTGGCGGTAAA 57.077 45.000 0.00 0.00 0.00 2.01
2000 3749 3.202829 AGTGACTTCTTGGCGGTAAAA 57.797 42.857 0.00 0.00 0.00 1.52
2001 3750 3.751518 AGTGACTTCTTGGCGGTAAAAT 58.248 40.909 0.00 0.00 0.00 1.82
2002 3751 4.901868 AGTGACTTCTTGGCGGTAAAATA 58.098 39.130 0.00 0.00 0.00 1.40
2003 3752 4.694037 AGTGACTTCTTGGCGGTAAAATAC 59.306 41.667 0.00 0.00 0.00 1.89
2004 3753 4.453136 GTGACTTCTTGGCGGTAAAATACA 59.547 41.667 0.00 0.00 0.00 2.29
2005 3754 4.453136 TGACTTCTTGGCGGTAAAATACAC 59.547 41.667 0.00 0.00 0.00 2.90
2006 3755 3.434299 ACTTCTTGGCGGTAAAATACACG 59.566 43.478 0.00 0.00 0.00 4.49
2007 3756 1.733360 TCTTGGCGGTAAAATACACGC 59.267 47.619 12.05 12.05 43.05 5.34
2009 3758 4.959491 GCGGTAAAATACACGCCG 57.041 55.556 0.00 0.00 44.60 6.46
2010 3759 2.080700 GCGGTAAAATACACGCCGT 58.919 52.632 0.00 0.00 43.78 5.68
2011 3760 1.276415 GCGGTAAAATACACGCCGTA 58.724 50.000 0.00 0.00 43.78 4.02
2012 3761 1.658095 GCGGTAAAATACACGCCGTAA 59.342 47.619 0.00 0.00 43.78 3.18
2013 3762 2.534742 GCGGTAAAATACACGCCGTAAC 60.535 50.000 0.00 0.00 43.78 2.50
2014 3763 2.665537 CGGTAAAATACACGCCGTAACA 59.334 45.455 0.00 0.00 37.87 2.41
2015 3764 3.481789 CGGTAAAATACACGCCGTAACAC 60.482 47.826 0.00 0.00 37.87 3.32
2016 3765 3.431572 GGTAAAATACACGCCGTAACACA 59.568 43.478 0.00 0.00 32.59 3.72
2017 3766 4.093261 GGTAAAATACACGCCGTAACACAT 59.907 41.667 0.00 0.00 32.59 3.21
2018 3767 4.330740 AAAATACACGCCGTAACACATC 57.669 40.909 0.00 0.00 32.59 3.06
2019 3768 2.953466 ATACACGCCGTAACACATCT 57.047 45.000 0.00 0.00 32.59 2.90
2020 3769 2.728690 TACACGCCGTAACACATCTT 57.271 45.000 0.00 0.00 0.00 2.40
2021 3770 1.425412 ACACGCCGTAACACATCTTC 58.575 50.000 0.00 0.00 0.00 2.87
2022 3771 1.000506 ACACGCCGTAACACATCTTCT 59.999 47.619 0.00 0.00 0.00 2.85
2023 3772 1.390123 CACGCCGTAACACATCTTCTG 59.610 52.381 0.00 0.00 0.00 3.02
2024 3773 0.999406 CGCCGTAACACATCTTCTGG 59.001 55.000 0.00 0.00 0.00 3.86
2025 3774 1.671850 CGCCGTAACACATCTTCTGGT 60.672 52.381 0.00 0.00 0.00 4.00
2026 3775 2.416296 CGCCGTAACACATCTTCTGGTA 60.416 50.000 0.00 0.00 0.00 3.25
2027 3776 3.187700 GCCGTAACACATCTTCTGGTAG 58.812 50.000 0.00 0.00 0.00 3.18
2028 3777 3.368116 GCCGTAACACATCTTCTGGTAGT 60.368 47.826 0.00 0.00 0.00 2.73
2029 3778 4.174009 CCGTAACACATCTTCTGGTAGTG 58.826 47.826 0.00 0.00 36.34 2.74
2030 3779 3.612860 CGTAACACATCTTCTGGTAGTGC 59.387 47.826 0.00 0.00 33.69 4.40
2031 3780 2.370281 ACACATCTTCTGGTAGTGCG 57.630 50.000 0.00 0.00 33.69 5.34
2032 3781 1.893137 ACACATCTTCTGGTAGTGCGA 59.107 47.619 0.00 0.00 33.69 5.10
2033 3782 2.094494 ACACATCTTCTGGTAGTGCGAG 60.094 50.000 0.00 0.00 33.69 5.03
2034 3783 2.094494 CACATCTTCTGGTAGTGCGAGT 60.094 50.000 0.00 0.00 0.00 4.18
2035 3784 3.128764 CACATCTTCTGGTAGTGCGAGTA 59.871 47.826 0.00 0.00 0.00 2.59
2036 3785 3.378742 ACATCTTCTGGTAGTGCGAGTAG 59.621 47.826 0.00 0.00 0.00 2.57
2037 3786 3.069079 TCTTCTGGTAGTGCGAGTAGT 57.931 47.619 0.00 0.00 0.00 2.73
2038 3787 3.418995 TCTTCTGGTAGTGCGAGTAGTT 58.581 45.455 0.00 0.00 0.00 2.24
2039 3788 3.439476 TCTTCTGGTAGTGCGAGTAGTTC 59.561 47.826 0.00 0.00 0.00 3.01
2040 3789 3.069079 TCTGGTAGTGCGAGTAGTTCT 57.931 47.619 0.00 0.00 0.00 3.01
2041 3790 4.212143 TCTGGTAGTGCGAGTAGTTCTA 57.788 45.455 0.00 0.00 0.00 2.10
2042 3791 3.937706 TCTGGTAGTGCGAGTAGTTCTAC 59.062 47.826 2.14 2.14 0.00 2.59
2043 3792 3.940221 CTGGTAGTGCGAGTAGTTCTACT 59.060 47.826 11.64 11.64 33.69 2.57
2044 3793 4.330250 TGGTAGTGCGAGTAGTTCTACTT 58.670 43.478 12.82 1.30 33.69 2.24
2045 3794 4.155462 TGGTAGTGCGAGTAGTTCTACTTG 59.845 45.833 18.01 18.01 35.15 3.16
2046 3795 3.851976 AGTGCGAGTAGTTCTACTTGG 57.148 47.619 21.57 14.37 33.17 3.61
2047 3796 3.418995 AGTGCGAGTAGTTCTACTTGGA 58.581 45.455 21.57 18.24 33.17 3.53
2048 3797 3.440872 AGTGCGAGTAGTTCTACTTGGAG 59.559 47.826 21.57 12.16 33.35 3.86
2049 3798 2.753452 TGCGAGTAGTTCTACTTGGAGG 59.247 50.000 21.57 9.08 33.17 4.30
2050 3799 2.479901 GCGAGTAGTTCTACTTGGAGGC 60.480 54.545 21.57 13.24 33.17 4.70
2051 3800 2.223294 CGAGTAGTTCTACTTGGAGGCG 60.223 54.545 15.69 9.51 0.00 5.52
2052 3801 2.099427 GAGTAGTTCTACTTGGAGGCGG 59.901 54.545 12.82 0.00 0.00 6.13
2053 3802 2.097825 GTAGTTCTACTTGGAGGCGGA 58.902 52.381 3.09 0.00 0.00 5.54
2054 3803 1.187087 AGTTCTACTTGGAGGCGGAG 58.813 55.000 0.00 0.00 0.00 4.63
2055 3804 1.183549 GTTCTACTTGGAGGCGGAGA 58.816 55.000 0.00 0.00 0.00 3.71
2056 3805 1.135333 GTTCTACTTGGAGGCGGAGAG 59.865 57.143 0.00 0.00 0.00 3.20
2075 3824 2.196295 GCACCTCGCTCAAGTAGTAG 57.804 55.000 0.00 0.00 37.77 2.57
2076 3825 1.743958 GCACCTCGCTCAAGTAGTAGA 59.256 52.381 0.00 0.00 37.77 2.59
2077 3826 2.478200 GCACCTCGCTCAAGTAGTAGAC 60.478 54.545 0.00 0.00 37.77 2.59
2078 3827 2.097791 CACCTCGCTCAAGTAGTAGACC 59.902 54.545 0.00 0.00 0.00 3.85
2079 3828 1.331138 CCTCGCTCAAGTAGTAGACCG 59.669 57.143 0.00 0.00 0.00 4.79
2080 3829 1.331138 CTCGCTCAAGTAGTAGACCGG 59.669 57.143 0.00 0.00 0.00 5.28
2081 3830 0.381089 CGCTCAAGTAGTAGACCGGG 59.619 60.000 6.32 0.00 0.00 5.73
2082 3831 1.472188 GCTCAAGTAGTAGACCGGGT 58.528 55.000 6.32 0.00 0.00 5.28
2083 3832 1.134560 GCTCAAGTAGTAGACCGGGTG 59.865 57.143 3.30 0.00 0.00 4.61
2084 3833 1.134560 CTCAAGTAGTAGACCGGGTGC 59.865 57.143 3.30 0.00 0.00 5.01
2085 3834 1.183549 CAAGTAGTAGACCGGGTGCT 58.816 55.000 3.30 3.91 0.00 4.40
2086 3835 1.135083 CAAGTAGTAGACCGGGTGCTG 60.135 57.143 3.30 0.00 0.00 4.41
2087 3836 0.683504 AGTAGTAGACCGGGTGCTGG 60.684 60.000 3.30 0.00 35.68 4.85
2088 3837 0.682209 GTAGTAGACCGGGTGCTGGA 60.682 60.000 3.30 0.00 33.36 3.86
2089 3838 0.682209 TAGTAGACCGGGTGCTGGAC 60.682 60.000 3.30 0.00 33.36 4.02
2090 3839 3.066190 TAGACCGGGTGCTGGACG 61.066 66.667 3.30 0.00 33.36 4.79
2097 3846 4.329545 GGTGCTGGACGGCTTGGA 62.330 66.667 4.59 0.00 0.00 3.53
2098 3847 2.045926 GTGCTGGACGGCTTGGAT 60.046 61.111 4.59 0.00 0.00 3.41
2099 3848 2.109126 GTGCTGGACGGCTTGGATC 61.109 63.158 4.59 0.00 0.00 3.36
2100 3849 2.293318 TGCTGGACGGCTTGGATCT 61.293 57.895 4.59 0.00 0.00 2.75
2101 3850 1.078143 GCTGGACGGCTTGGATCTT 60.078 57.895 0.00 0.00 0.00 2.40
2102 3851 0.678048 GCTGGACGGCTTGGATCTTT 60.678 55.000 0.00 0.00 0.00 2.52
2103 3852 1.373570 CTGGACGGCTTGGATCTTTC 58.626 55.000 0.00 0.00 0.00 2.62
2104 3853 0.035439 TGGACGGCTTGGATCTTTCC 60.035 55.000 0.00 0.00 42.94 3.13
2105 3854 0.748367 GGACGGCTTGGATCTTTCCC 60.748 60.000 0.00 0.00 41.83 3.97
2106 3855 0.253327 GACGGCTTGGATCTTTCCCT 59.747 55.000 0.00 0.00 41.83 4.20
2107 3856 0.698818 ACGGCTTGGATCTTTCCCTT 59.301 50.000 0.00 0.00 41.83 3.95
2108 3857 1.340114 ACGGCTTGGATCTTTCCCTTC 60.340 52.381 0.00 0.00 41.83 3.46
2109 3858 1.065126 CGGCTTGGATCTTTCCCTTCT 60.065 52.381 0.00 0.00 41.83 2.85
2110 3859 2.649190 GGCTTGGATCTTTCCCTTCTC 58.351 52.381 0.00 0.00 41.83 2.87
2111 3860 2.240921 GGCTTGGATCTTTCCCTTCTCT 59.759 50.000 0.00 0.00 41.83 3.10
2112 3861 3.277715 GCTTGGATCTTTCCCTTCTCTG 58.722 50.000 0.00 0.00 41.83 3.35
2113 3862 3.883669 CTTGGATCTTTCCCTTCTCTGG 58.116 50.000 0.00 0.00 41.83 3.86
2114 3863 3.205519 TGGATCTTTCCCTTCTCTGGA 57.794 47.619 0.00 0.00 41.83 3.86
2115 3864 2.840651 TGGATCTTTCCCTTCTCTGGAC 59.159 50.000 0.00 0.00 41.83 4.02
2116 3865 2.840651 GGATCTTTCCCTTCTCTGGACA 59.159 50.000 0.00 0.00 35.84 4.02
2117 3866 3.369997 GGATCTTTCCCTTCTCTGGACAC 60.370 52.174 0.00 0.00 35.84 3.67
2118 3867 2.977808 TCTTTCCCTTCTCTGGACACT 58.022 47.619 0.00 0.00 0.00 3.55
2119 3868 2.900546 TCTTTCCCTTCTCTGGACACTC 59.099 50.000 0.00 0.00 0.00 3.51
2120 3869 1.257743 TTCCCTTCTCTGGACACTCG 58.742 55.000 0.00 0.00 0.00 4.18
2121 3870 0.404426 TCCCTTCTCTGGACACTCGA 59.596 55.000 0.00 0.00 0.00 4.04
2122 3871 0.528470 CCCTTCTCTGGACACTCGAC 59.472 60.000 0.00 0.00 0.00 4.20
2123 3872 0.528470 CCTTCTCTGGACACTCGACC 59.472 60.000 0.00 0.00 0.00 4.79
2124 3873 1.248486 CTTCTCTGGACACTCGACCA 58.752 55.000 0.00 0.00 35.57 4.02
2125 3874 0.959553 TTCTCTGGACACTCGACCAC 59.040 55.000 0.00 0.00 33.22 4.16
2126 3875 0.894184 TCTCTGGACACTCGACCACC 60.894 60.000 0.00 0.00 33.22 4.61
2127 3876 1.152631 TCTGGACACTCGACCACCA 60.153 57.895 0.00 0.00 33.22 4.17
2128 3877 1.006102 CTGGACACTCGACCACCAC 60.006 63.158 0.00 0.00 33.22 4.16
2129 3878 2.342648 GGACACTCGACCACCACC 59.657 66.667 0.00 0.00 0.00 4.61
2130 3879 2.504274 GGACACTCGACCACCACCA 61.504 63.158 0.00 0.00 0.00 4.17
2131 3880 1.671742 GACACTCGACCACCACCAT 59.328 57.895 0.00 0.00 0.00 3.55
2132 3881 0.389948 GACACTCGACCACCACCATC 60.390 60.000 0.00 0.00 0.00 3.51
2133 3882 1.446099 CACTCGACCACCACCATCG 60.446 63.158 0.00 0.00 37.20 3.84
2134 3883 1.906824 ACTCGACCACCACCATCGT 60.907 57.895 0.00 0.00 37.16 3.73
2135 3884 1.446099 CTCGACCACCACCATCGTG 60.446 63.158 0.00 0.00 39.91 4.35
2136 3885 3.118454 CGACCACCACCATCGTGC 61.118 66.667 0.00 0.00 38.79 5.34
2137 3886 2.347490 GACCACCACCATCGTGCT 59.653 61.111 0.00 0.00 38.79 4.40
2138 3887 2.032528 ACCACCACCATCGTGCTG 59.967 61.111 0.00 0.00 38.79 4.41
2139 3888 2.347114 CCACCACCATCGTGCTGA 59.653 61.111 0.00 0.00 38.79 4.26
2140 3889 1.078214 CCACCACCATCGTGCTGAT 60.078 57.895 0.00 0.00 38.79 2.90
2141 3890 1.091771 CCACCACCATCGTGCTGATC 61.092 60.000 0.00 0.00 38.79 2.92
2142 3891 1.153568 ACCACCATCGTGCTGATCG 60.154 57.895 0.00 0.00 38.79 3.69
2143 3892 1.141665 CCACCATCGTGCTGATCGA 59.858 57.895 0.00 0.00 38.79 3.59
2144 3893 1.148157 CCACCATCGTGCTGATCGAC 61.148 60.000 0.00 0.00 40.07 4.20
2145 3894 1.141881 ACCATCGTGCTGATCGACC 59.858 57.895 0.00 0.00 40.07 4.79
2146 3895 1.946156 CCATCGTGCTGATCGACCG 60.946 63.158 0.00 0.00 40.07 4.79
2147 3896 2.278857 ATCGTGCTGATCGACCGC 60.279 61.111 0.00 0.00 40.07 5.68
2148 3897 4.829518 TCGTGCTGATCGACCGCG 62.830 66.667 0.00 0.00 39.35 6.46
2162 3911 3.197790 CGCGAGGTGGAGGCAATG 61.198 66.667 0.00 0.00 0.00 2.82
2163 3912 2.045926 GCGAGGTGGAGGCAATGT 60.046 61.111 0.00 0.00 0.00 2.71
2164 3913 1.220749 GCGAGGTGGAGGCAATGTA 59.779 57.895 0.00 0.00 0.00 2.29
2165 3914 0.811616 GCGAGGTGGAGGCAATGTAG 60.812 60.000 0.00 0.00 0.00 2.74
2166 3915 0.824109 CGAGGTGGAGGCAATGTAGA 59.176 55.000 0.00 0.00 0.00 2.59
2167 3916 1.471676 CGAGGTGGAGGCAATGTAGAC 60.472 57.143 0.00 0.00 0.00 2.59
2168 3917 1.555075 GAGGTGGAGGCAATGTAGACA 59.445 52.381 0.00 0.00 0.00 3.41
2169 3918 1.985159 AGGTGGAGGCAATGTAGACAA 59.015 47.619 0.00 0.00 0.00 3.18
2170 3919 2.375174 AGGTGGAGGCAATGTAGACAAA 59.625 45.455 0.00 0.00 0.00 2.83
2171 3920 2.488153 GGTGGAGGCAATGTAGACAAAC 59.512 50.000 0.00 0.00 0.00 2.93
2172 3921 3.146066 GTGGAGGCAATGTAGACAAACA 58.854 45.455 0.00 0.00 0.00 2.83
2173 3922 3.189287 GTGGAGGCAATGTAGACAAACAG 59.811 47.826 0.00 0.00 31.70 3.16
2174 3923 2.162408 GGAGGCAATGTAGACAAACAGC 59.838 50.000 0.00 0.00 31.70 4.40
2175 3924 1.806542 AGGCAATGTAGACAAACAGCG 59.193 47.619 0.00 0.00 31.70 5.18
2176 3925 1.135689 GGCAATGTAGACAAACAGCGG 60.136 52.381 0.00 0.00 31.70 5.52
2177 3926 1.729149 GCAATGTAGACAAACAGCGGC 60.729 52.381 0.00 0.00 31.70 6.53
2178 3927 1.806542 CAATGTAGACAAACAGCGGCT 59.193 47.619 0.00 0.00 31.70 5.52
2179 3928 1.726853 ATGTAGACAAACAGCGGCTC 58.273 50.000 0.00 0.00 31.70 4.70
2180 3929 0.320421 TGTAGACAAACAGCGGCTCC 60.320 55.000 0.00 0.00 0.00 4.70
2181 3930 0.037232 GTAGACAAACAGCGGCTCCT 60.037 55.000 0.00 0.00 0.00 3.69
2182 3931 0.685097 TAGACAAACAGCGGCTCCTT 59.315 50.000 0.00 0.00 0.00 3.36
2183 3932 0.603975 AGACAAACAGCGGCTCCTTC 60.604 55.000 0.00 0.00 0.00 3.46
2184 3933 0.603975 GACAAACAGCGGCTCCTTCT 60.604 55.000 0.00 0.00 0.00 2.85
2185 3934 0.603975 ACAAACAGCGGCTCCTTCTC 60.604 55.000 0.00 0.00 0.00 2.87
2186 3935 1.374758 AAACAGCGGCTCCTTCTCG 60.375 57.895 0.00 0.00 0.00 4.04
2190 3939 3.191539 GCGGCTCCTTCTCGCTTG 61.192 66.667 0.00 0.00 45.16 4.01
2191 3940 2.510238 CGGCTCCTTCTCGCTTGG 60.510 66.667 0.00 0.00 0.00 3.61
2192 3941 2.665603 GGCTCCTTCTCGCTTGGT 59.334 61.111 0.00 0.00 0.00 3.67
2193 3942 1.743252 GGCTCCTTCTCGCTTGGTG 60.743 63.158 0.00 0.00 0.00 4.17
2194 3943 2.394563 GCTCCTTCTCGCTTGGTGC 61.395 63.158 0.00 0.00 38.57 5.01
2222 3971 3.161450 GGGGCGGTGGAGAGCATA 61.161 66.667 0.00 0.00 34.54 3.14
2223 3972 2.520536 GGGGCGGTGGAGAGCATAT 61.521 63.158 0.00 0.00 34.54 1.78
2224 3973 1.302033 GGGCGGTGGAGAGCATATG 60.302 63.158 0.00 0.00 34.54 1.78
2225 3974 1.963338 GGCGGTGGAGAGCATATGC 60.963 63.158 20.36 20.36 42.49 3.14
2240 3989 5.762825 GCATATGCTTGAGATCCTGAAAA 57.237 39.130 20.64 0.00 38.21 2.29
2241 3990 5.759963 GCATATGCTTGAGATCCTGAAAAG 58.240 41.667 20.64 0.00 38.21 2.27
2242 3991 5.759963 CATATGCTTGAGATCCTGAAAAGC 58.240 41.667 0.00 0.00 42.78 3.51
2243 3992 2.440409 TGCTTGAGATCCTGAAAAGCC 58.560 47.619 10.90 0.00 41.99 4.35
2244 3993 2.040813 TGCTTGAGATCCTGAAAAGCCT 59.959 45.455 10.90 0.00 41.99 4.58
2245 3994 2.682352 GCTTGAGATCCTGAAAAGCCTC 59.318 50.000 0.00 0.00 37.80 4.70
2246 3995 2.680312 TGAGATCCTGAAAAGCCTCG 57.320 50.000 0.00 0.00 0.00 4.63
2247 3996 1.902508 TGAGATCCTGAAAAGCCTCGT 59.097 47.619 0.00 0.00 0.00 4.18
2248 3997 2.093973 TGAGATCCTGAAAAGCCTCGTC 60.094 50.000 0.00 0.00 0.00 4.20
2249 3998 1.208293 AGATCCTGAAAAGCCTCGTCC 59.792 52.381 0.00 0.00 0.00 4.79
2250 3999 0.984230 ATCCTGAAAAGCCTCGTCCA 59.016 50.000 0.00 0.00 0.00 4.02
2251 4000 0.034896 TCCTGAAAAGCCTCGTCCAC 59.965 55.000 0.00 0.00 0.00 4.02
2252 4001 0.955919 CCTGAAAAGCCTCGTCCACC 60.956 60.000 0.00 0.00 0.00 4.61
2253 4002 0.035458 CTGAAAAGCCTCGTCCACCT 59.965 55.000 0.00 0.00 0.00 4.00
2254 4003 0.250295 TGAAAAGCCTCGTCCACCTG 60.250 55.000 0.00 0.00 0.00 4.00
2255 4004 0.955919 GAAAAGCCTCGTCCACCTGG 60.956 60.000 0.00 0.00 0.00 4.45
2256 4005 1.705997 AAAAGCCTCGTCCACCTGGT 61.706 55.000 0.00 0.00 36.34 4.00
2257 4006 2.113243 AAAGCCTCGTCCACCTGGTC 62.113 60.000 0.00 0.00 36.34 4.02
2258 4007 4.436998 GCCTCGTCCACCTGGTCG 62.437 72.222 0.00 4.79 45.66 4.79
2259 4008 2.989824 CCTCGTCCACCTGGTCGT 60.990 66.667 10.18 0.00 44.82 4.34
2260 4009 2.571216 CCTCGTCCACCTGGTCGTT 61.571 63.158 10.18 0.00 44.82 3.85
2261 4010 1.080705 CTCGTCCACCTGGTCGTTC 60.081 63.158 10.18 0.00 44.82 3.95
2262 4011 2.048503 CGTCCACCTGGTCGTTCC 60.049 66.667 0.00 0.00 40.83 3.62
2263 4012 2.863346 CGTCCACCTGGTCGTTCCA 61.863 63.158 0.00 2.64 45.01 3.53
2264 4013 1.677552 GTCCACCTGGTCGTTCCAT 59.322 57.895 0.00 0.00 46.12 3.41
2265 4014 0.036306 GTCCACCTGGTCGTTCCATT 59.964 55.000 0.00 0.00 46.12 3.16
2266 4015 0.323629 TCCACCTGGTCGTTCCATTC 59.676 55.000 0.00 0.00 46.12 2.67
2267 4016 1.019278 CCACCTGGTCGTTCCATTCG 61.019 60.000 0.00 0.00 46.12 3.34
2268 4017 0.037697 CACCTGGTCGTTCCATTCGA 60.038 55.000 0.00 0.00 46.12 3.71
2269 4018 0.682852 ACCTGGTCGTTCCATTCGAA 59.317 50.000 0.00 0.00 46.12 3.71
2270 4019 1.076332 CCTGGTCGTTCCATTCGAAC 58.924 55.000 0.00 0.00 46.12 3.95
2275 4024 3.557824 GTTCCATTCGAACGGCGT 58.442 55.556 6.77 6.77 41.51 5.68
2276 4025 1.418755 GTTCCATTCGAACGGCGTC 59.581 57.895 15.17 6.18 41.51 5.19
2277 4026 2.089936 TTCCATTCGAACGGCGTCG 61.090 57.895 15.17 18.54 42.48 5.12
2287 4036 4.478195 CGGCGTCGTCTTCTTCAT 57.522 55.556 0.00 0.00 0.00 2.57
2288 4037 2.279469 CGGCGTCGTCTTCTTCATC 58.721 57.895 0.00 0.00 0.00 2.92
2289 4038 0.456142 CGGCGTCGTCTTCTTCATCA 60.456 55.000 0.00 0.00 0.00 3.07
2290 4039 1.272781 GGCGTCGTCTTCTTCATCAG 58.727 55.000 0.00 0.00 0.00 2.90
2291 4040 1.272781 GCGTCGTCTTCTTCATCAGG 58.727 55.000 0.00 0.00 0.00 3.86
2292 4041 1.402984 GCGTCGTCTTCTTCATCAGGT 60.403 52.381 0.00 0.00 0.00 4.00
2293 4042 2.254459 CGTCGTCTTCTTCATCAGGTG 58.746 52.381 0.00 0.00 0.00 4.00
2294 4043 2.095212 CGTCGTCTTCTTCATCAGGTGA 60.095 50.000 0.00 0.00 34.25 4.02
2295 4044 3.428180 CGTCGTCTTCTTCATCAGGTGAT 60.428 47.826 0.00 0.00 36.54 3.06
2296 4045 4.201920 CGTCGTCTTCTTCATCAGGTGATA 60.202 45.833 0.00 0.00 36.54 2.15
2297 4046 5.038033 GTCGTCTTCTTCATCAGGTGATAC 58.962 45.833 0.00 0.00 36.54 2.24
2298 4047 4.705023 TCGTCTTCTTCATCAGGTGATACA 59.295 41.667 0.00 0.00 36.54 2.29
2299 4048 5.039984 CGTCTTCTTCATCAGGTGATACAG 58.960 45.833 0.00 0.00 36.54 2.74
2300 4049 5.355596 GTCTTCTTCATCAGGTGATACAGG 58.644 45.833 0.00 0.00 36.54 4.00
2301 4050 4.406972 TCTTCTTCATCAGGTGATACAGGG 59.593 45.833 0.00 0.00 36.54 4.45
2302 4051 3.041211 TCTTCATCAGGTGATACAGGGG 58.959 50.000 0.00 0.00 36.54 4.79
2303 4052 1.131638 TCATCAGGTGATACAGGGGC 58.868 55.000 0.00 0.00 32.63 5.80
2304 4053 0.839277 CATCAGGTGATACAGGGGCA 59.161 55.000 0.00 0.00 32.63 5.36
2305 4054 1.212688 CATCAGGTGATACAGGGGCAA 59.787 52.381 0.00 0.00 32.63 4.52
2306 4055 0.911769 TCAGGTGATACAGGGGCAAG 59.088 55.000 0.00 0.00 0.00 4.01
2307 4056 0.107017 CAGGTGATACAGGGGCAAGG 60.107 60.000 0.00 0.00 0.00 3.61
2308 4057 1.453928 GGTGATACAGGGGCAAGGC 60.454 63.158 0.00 0.00 0.00 4.35
2318 4067 2.275748 GGCAAGGCCCTCTTACCC 59.724 66.667 0.00 0.00 44.06 3.69
2319 4068 2.612493 GGCAAGGCCCTCTTACCCA 61.612 63.158 0.00 0.00 44.06 4.51
2320 4069 1.077429 GCAAGGCCCTCTTACCCAG 60.077 63.158 0.00 0.00 33.68 4.45
2321 4070 1.077429 CAAGGCCCTCTTACCCAGC 60.077 63.158 0.00 0.00 33.68 4.85
2322 4071 2.309504 AAGGCCCTCTTACCCAGCC 61.310 63.158 0.00 0.00 44.20 4.85
2323 4072 4.176752 GGCCCTCTTACCCAGCCG 62.177 72.222 0.00 0.00 33.18 5.52
2324 4073 4.176752 GCCCTCTTACCCAGCCGG 62.177 72.222 0.00 0.00 37.81 6.13
2325 4074 4.176752 CCCTCTTACCCAGCCGGC 62.177 72.222 21.89 21.89 33.26 6.13
2326 4075 3.083997 CCTCTTACCCAGCCGGCT 61.084 66.667 27.08 27.08 33.26 5.52
2327 4076 2.187946 CTCTTACCCAGCCGGCTG 59.812 66.667 43.23 43.23 43.26 4.85
2335 4084 3.121030 CAGCCGGCTGAGAAACCG 61.121 66.667 46.72 21.06 46.30 4.44
2339 4088 3.121030 CGGCTGAGAAACCGGCTG 61.121 66.667 0.00 0.00 45.74 4.85
2340 4089 2.347490 GGCTGAGAAACCGGCTGA 59.653 61.111 0.00 0.00 38.45 4.26
2341 4090 2.035442 GGCTGAGAAACCGGCTGAC 61.035 63.158 0.00 0.00 38.45 3.51
2342 4091 2.035442 GCTGAGAAACCGGCTGACC 61.035 63.158 0.00 0.00 35.61 4.02
2352 4101 2.044946 GGCTGACCGAGGCCAAAT 60.045 61.111 5.01 0.00 46.84 2.32
2353 4102 1.223487 GGCTGACCGAGGCCAAATA 59.777 57.895 5.01 0.00 46.84 1.40
2354 4103 0.815615 GGCTGACCGAGGCCAAATAG 60.816 60.000 5.01 0.00 46.84 1.73
2355 4104 1.440145 GCTGACCGAGGCCAAATAGC 61.440 60.000 5.01 3.02 0.00 2.97
2356 4105 0.179000 CTGACCGAGGCCAAATAGCT 59.821 55.000 5.01 0.00 0.00 3.32
2357 4106 0.107703 TGACCGAGGCCAAATAGCTG 60.108 55.000 5.01 0.00 0.00 4.24
2358 4107 0.815615 GACCGAGGCCAAATAGCTGG 60.816 60.000 5.01 0.00 39.71 4.85
2359 4108 1.224592 CCGAGGCCAAATAGCTGGT 59.775 57.895 5.01 0.00 38.86 4.00
2360 4109 1.097547 CCGAGGCCAAATAGCTGGTG 61.098 60.000 5.01 0.00 38.86 4.17
2361 4110 0.107703 CGAGGCCAAATAGCTGGTGA 60.108 55.000 5.01 0.00 38.86 4.02
2362 4111 1.678728 CGAGGCCAAATAGCTGGTGAA 60.679 52.381 5.01 0.00 38.86 3.18
2363 4112 1.745653 GAGGCCAAATAGCTGGTGAAC 59.254 52.381 5.01 0.00 38.86 3.18
2364 4113 1.355720 AGGCCAAATAGCTGGTGAACT 59.644 47.619 5.01 0.00 38.86 3.01
2365 4114 2.171003 GGCCAAATAGCTGGTGAACTT 58.829 47.619 0.00 0.00 38.86 2.66
2366 4115 3.010138 AGGCCAAATAGCTGGTGAACTTA 59.990 43.478 5.01 0.00 38.86 2.24
2367 4116 3.954258 GGCCAAATAGCTGGTGAACTTAT 59.046 43.478 0.00 0.00 38.86 1.73
2368 4117 4.202050 GGCCAAATAGCTGGTGAACTTATG 60.202 45.833 0.00 0.00 38.86 1.90
2369 4118 4.202050 GCCAAATAGCTGGTGAACTTATGG 60.202 45.833 0.00 0.00 38.86 2.74
2370 4119 5.192927 CCAAATAGCTGGTGAACTTATGGA 58.807 41.667 0.00 0.00 0.00 3.41
2371 4120 5.066505 CCAAATAGCTGGTGAACTTATGGAC 59.933 44.000 0.00 0.00 0.00 4.02
2372 4121 5.435686 AATAGCTGGTGAACTTATGGACA 57.564 39.130 0.00 0.00 0.00 4.02
2373 4122 5.636903 ATAGCTGGTGAACTTATGGACAT 57.363 39.130 0.00 0.00 0.00 3.06
2374 4123 3.878778 AGCTGGTGAACTTATGGACATC 58.121 45.455 0.00 0.00 0.00 3.06
2375 4124 2.609459 GCTGGTGAACTTATGGACATCG 59.391 50.000 0.00 0.00 0.00 3.84
2376 4125 2.609459 CTGGTGAACTTATGGACATCGC 59.391 50.000 0.00 0.00 0.00 4.58
2377 4126 1.593006 GGTGAACTTATGGACATCGCG 59.407 52.381 0.00 0.00 0.00 5.87
2378 4127 1.004927 GTGAACTTATGGACATCGCGC 60.005 52.381 0.00 0.00 0.00 6.86
2379 4128 1.286501 GAACTTATGGACATCGCGCA 58.713 50.000 8.75 0.00 0.00 6.09
2380 4129 1.258982 GAACTTATGGACATCGCGCAG 59.741 52.381 8.75 0.00 0.00 5.18
2412 4161 4.060038 GCATGCGCTTGTTGGCCT 62.060 61.111 22.50 0.00 34.30 5.19
2413 4162 2.652530 CATGCGCTTGTTGGCCTT 59.347 55.556 14.73 0.00 0.00 4.35
2414 4163 1.735198 CATGCGCTTGTTGGCCTTG 60.735 57.895 14.73 0.00 0.00 3.61
2415 4164 1.902918 ATGCGCTTGTTGGCCTTGA 60.903 52.632 9.73 0.00 0.00 3.02
2416 4165 1.252904 ATGCGCTTGTTGGCCTTGAT 61.253 50.000 9.73 0.00 0.00 2.57
2417 4166 1.153958 GCGCTTGTTGGCCTTGATC 60.154 57.895 3.32 0.00 0.00 2.92
2418 4167 1.589716 GCGCTTGTTGGCCTTGATCT 61.590 55.000 3.32 0.00 0.00 2.75
2419 4168 0.883833 CGCTTGTTGGCCTTGATCTT 59.116 50.000 3.32 0.00 0.00 2.40
2420 4169 1.135575 CGCTTGTTGGCCTTGATCTTC 60.136 52.381 3.32 0.00 0.00 2.87
2421 4170 2.165998 GCTTGTTGGCCTTGATCTTCT 58.834 47.619 3.32 0.00 0.00 2.85
2422 4171 2.163211 GCTTGTTGGCCTTGATCTTCTC 59.837 50.000 3.32 0.00 0.00 2.87
2423 4172 2.496899 TGTTGGCCTTGATCTTCTCC 57.503 50.000 3.32 0.00 0.00 3.71
2424 4173 1.988107 TGTTGGCCTTGATCTTCTCCT 59.012 47.619 3.32 0.00 0.00 3.69
2425 4174 2.290514 TGTTGGCCTTGATCTTCTCCTG 60.291 50.000 3.32 0.00 0.00 3.86
2426 4175 0.914644 TGGCCTTGATCTTCTCCTGG 59.085 55.000 3.32 0.00 0.00 4.45
2427 4176 0.915364 GGCCTTGATCTTCTCCTGGT 59.085 55.000 0.00 0.00 0.00 4.00
2428 4177 1.283321 GGCCTTGATCTTCTCCTGGTT 59.717 52.381 0.00 0.00 0.00 3.67
2429 4178 2.637947 GCCTTGATCTTCTCCTGGTTC 58.362 52.381 0.00 0.00 0.00 3.62
2430 4179 2.898705 CCTTGATCTTCTCCTGGTTCG 58.101 52.381 0.00 0.00 0.00 3.95
2431 4180 2.275318 CTTGATCTTCTCCTGGTTCGC 58.725 52.381 0.00 0.00 0.00 4.70
2432 4181 0.537188 TGATCTTCTCCTGGTTCGCC 59.463 55.000 0.00 0.00 37.92 5.54
2433 4182 0.827368 GATCTTCTCCTGGTTCGCCT 59.173 55.000 0.00 0.00 38.36 5.52
2434 4183 0.827368 ATCTTCTCCTGGTTCGCCTC 59.173 55.000 0.00 0.00 38.36 4.70
2435 4184 0.541998 TCTTCTCCTGGTTCGCCTCA 60.542 55.000 0.00 0.00 38.36 3.86
2436 4185 0.321671 CTTCTCCTGGTTCGCCTCAA 59.678 55.000 0.00 0.00 38.36 3.02
2437 4186 0.984230 TTCTCCTGGTTCGCCTCAAT 59.016 50.000 0.00 0.00 38.36 2.57
2438 4187 0.250234 TCTCCTGGTTCGCCTCAATG 59.750 55.000 0.00 0.00 38.36 2.82
2439 4188 0.036010 CTCCTGGTTCGCCTCAATGT 60.036 55.000 0.00 0.00 38.36 2.71
2440 4189 0.036388 TCCTGGTTCGCCTCAATGTC 60.036 55.000 0.00 0.00 38.36 3.06
2441 4190 0.321564 CCTGGTTCGCCTCAATGTCA 60.322 55.000 0.00 0.00 38.36 3.58
2442 4191 0.798776 CTGGTTCGCCTCAATGTCAC 59.201 55.000 0.00 0.00 38.36 3.67
2443 4192 0.948623 TGGTTCGCCTCAATGTCACG 60.949 55.000 0.00 0.00 38.36 4.35
2444 4193 1.132640 GTTCGCCTCAATGTCACGC 59.867 57.895 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.607293 TGCATGACTCAGAACAAGTAGT 57.393 40.909 0.00 0.00 0.00 2.73
62 63 6.494893 TCAATCCATGCTAAACTACAACAC 57.505 37.500 0.00 0.00 0.00 3.32
92 93 2.642311 TGCCCTTGAACTCTCCAATACA 59.358 45.455 0.00 0.00 0.00 2.29
165 166 7.335171 TGGATCATCACATTTCAAGTAGAAGTG 59.665 37.037 0.00 0.00 46.16 3.16
166 167 7.335422 GTGGATCATCACATTTCAAGTAGAAGT 59.665 37.037 0.00 0.00 36.29 3.01
264 266 3.057245 GTCTTTGGTGATCTGAAAAGGCC 60.057 47.826 0.00 0.00 29.93 5.19
405 2087 7.268586 AGTAGAGCAGGTTTGTACTAATGATG 58.731 38.462 0.00 0.00 0.00 3.07
468 2152 5.417580 GGTAAAATTGACTAGACAATGCCCA 59.582 40.000 18.90 4.91 39.88 5.36
480 2164 5.223449 TCAGGAGTTCGGTAAAATTGACT 57.777 39.130 0.00 0.00 0.00 3.41
481 2165 5.237779 TGTTCAGGAGTTCGGTAAAATTGAC 59.762 40.000 0.00 0.00 0.00 3.18
539 2223 4.592942 TGCCTGAATTCAGAATGCTAACT 58.407 39.130 32.49 0.00 46.59 2.24
545 2229 4.994907 TGGAATGCCTGAATTCAGAATG 57.005 40.909 32.49 18.86 46.59 2.67
588 2272 5.321927 AGGGGGTCAGTGTTAAAATAACAG 58.678 41.667 3.32 0.00 0.00 3.16
624 2309 0.034767 ACATATGGCTGTGCTGCACT 60.035 50.000 30.43 14.60 35.11 4.40
658 2343 1.649664 GCTCGAGCATGAACTGATGT 58.350 50.000 31.91 0.00 41.59 3.06
709 2395 3.652057 AATAGTGTCCCACATCCTTGG 57.348 47.619 0.00 0.00 36.74 3.61
822 2508 1.551883 GGGAACATGGCTCAGCATTTT 59.448 47.619 0.00 0.00 0.00 1.82
872 2558 2.772515 GAGCATACTAACCCCTTCAGGT 59.227 50.000 0.00 0.00 44.00 4.00
911 2613 7.283354 TGACACATAAAAATAATCCGGTGCATA 59.717 33.333 0.00 0.00 0.00 3.14
1005 2716 1.407979 ACAAACCTCTCGACGACTGTT 59.592 47.619 0.00 0.00 0.00 3.16
1008 2719 0.314302 CCACAAACCTCTCGACGACT 59.686 55.000 0.00 0.00 0.00 4.18
1062 2773 0.032815 TGACGACCAACATCTTCGCA 59.967 50.000 0.00 0.00 36.18 5.10
1069 2780 4.038522 CCAGAGATAGATGACGACCAACAT 59.961 45.833 0.00 0.00 0.00 2.71
1072 2783 2.362397 GCCAGAGATAGATGACGACCAA 59.638 50.000 0.00 0.00 0.00 3.67
1075 2786 2.287909 GGTGCCAGAGATAGATGACGAC 60.288 54.545 0.00 0.00 0.00 4.34
1107 2818 2.164624 GGTGTCTGATCGACTGCTTACT 59.835 50.000 15.40 0.00 43.25 2.24
1207 2920 2.654863 CCCGCACCCTAAAATCTGAAT 58.345 47.619 0.00 0.00 0.00 2.57
1255 2968 3.907260 CTCATGCCACGCCACCAGT 62.907 63.158 0.00 0.00 0.00 4.00
1305 3018 3.396822 ATGTCCCTCGCCCTAGCCT 62.397 63.158 0.00 0.00 34.57 4.58
1362 3075 2.320587 GCCTCAACGAGCCACACTG 61.321 63.158 0.00 0.00 0.00 3.66
1403 3116 0.110678 CCTGATCTCATGGCCTGCAT 59.889 55.000 3.32 0.00 0.00 3.96
1547 3260 3.323691 TGTTGTGTGTGTCAGCTACCTAT 59.676 43.478 0.00 0.00 0.00 2.57
1724 3449 5.400703 AGTACTAGTAGCGAGCAGTTTTTC 58.599 41.667 1.87 0.00 0.00 2.29
1794 3521 2.628178 TCATGCCTGCGCTACTACTAAT 59.372 45.455 9.73 0.00 35.36 1.73
1811 3538 2.545526 CCCACGCTACTGCTATTTCATG 59.454 50.000 0.00 0.00 36.97 3.07
1865 3595 1.500512 GCGTGGGTTAAACTCGTGCA 61.501 55.000 9.46 0.00 0.00 4.57
1868 3613 1.615392 AGTAGCGTGGGTTAAACTCGT 59.385 47.619 9.46 1.90 0.00 4.18
1871 3616 1.804601 GCAGTAGCGTGGGTTAAACT 58.195 50.000 0.00 0.00 0.00 2.66
1907 3653 1.154263 CCGCGCTACTAGTATCGCC 60.154 63.158 33.28 21.05 44.74 5.54
1985 3734 3.726782 GCGTGTATTTTACCGCCAAGAAG 60.727 47.826 0.00 0.00 40.20 2.85
1987 3736 1.733360 GCGTGTATTTTACCGCCAAGA 59.267 47.619 0.00 0.00 40.20 3.02
1988 3737 2.168201 GCGTGTATTTTACCGCCAAG 57.832 50.000 0.00 0.00 40.20 3.61
1992 3741 4.959491 CGGCGTGTATTTTACCGC 57.041 55.556 0.00 10.19 43.05 5.68
1994 3743 3.431572 TGTGTTACGGCGTGTATTTTACC 59.568 43.478 24.86 0.00 31.81 2.85
1995 3744 4.644044 TGTGTTACGGCGTGTATTTTAC 57.356 40.909 24.86 11.85 31.81 2.01
1996 3745 5.170021 AGATGTGTTACGGCGTGTATTTTA 58.830 37.500 24.86 0.00 31.81 1.52
1997 3746 3.998341 AGATGTGTTACGGCGTGTATTTT 59.002 39.130 24.86 3.21 31.81 1.82
1998 3747 3.592059 AGATGTGTTACGGCGTGTATTT 58.408 40.909 24.86 2.62 31.81 1.40
1999 3748 3.241067 AGATGTGTTACGGCGTGTATT 57.759 42.857 24.86 2.01 31.81 1.89
2000 3749 2.953466 AGATGTGTTACGGCGTGTAT 57.047 45.000 24.86 9.27 31.81 2.29
2001 3750 2.229543 AGAAGATGTGTTACGGCGTGTA 59.770 45.455 24.86 7.78 0.00 2.90
2002 3751 1.000506 AGAAGATGTGTTACGGCGTGT 59.999 47.619 24.86 0.00 0.00 4.49
2003 3752 1.390123 CAGAAGATGTGTTACGGCGTG 59.610 52.381 24.86 0.00 0.00 5.34
2004 3753 1.671850 CCAGAAGATGTGTTACGGCGT 60.672 52.381 19.64 19.64 0.00 5.68
2005 3754 0.999406 CCAGAAGATGTGTTACGGCG 59.001 55.000 4.80 4.80 0.00 6.46
2006 3755 2.094762 ACCAGAAGATGTGTTACGGC 57.905 50.000 0.00 0.00 0.00 5.68
2007 3756 4.174009 CACTACCAGAAGATGTGTTACGG 58.826 47.826 0.00 0.00 0.00 4.02
2008 3757 3.612860 GCACTACCAGAAGATGTGTTACG 59.387 47.826 0.00 0.00 0.00 3.18
2009 3758 3.612860 CGCACTACCAGAAGATGTGTTAC 59.387 47.826 0.00 0.00 0.00 2.50
2010 3759 3.508402 TCGCACTACCAGAAGATGTGTTA 59.492 43.478 0.00 0.00 0.00 2.41
2011 3760 2.299013 TCGCACTACCAGAAGATGTGTT 59.701 45.455 0.00 0.00 0.00 3.32
2012 3761 1.893137 TCGCACTACCAGAAGATGTGT 59.107 47.619 0.00 0.00 0.00 3.72
2013 3762 2.094494 ACTCGCACTACCAGAAGATGTG 60.094 50.000 0.00 0.00 0.00 3.21
2014 3763 2.171840 ACTCGCACTACCAGAAGATGT 58.828 47.619 0.00 0.00 0.00 3.06
2015 3764 2.949451 ACTCGCACTACCAGAAGATG 57.051 50.000 0.00 0.00 0.00 2.90
2016 3765 3.622630 ACTACTCGCACTACCAGAAGAT 58.377 45.455 0.00 0.00 0.00 2.40
2017 3766 3.069079 ACTACTCGCACTACCAGAAGA 57.931 47.619 0.00 0.00 0.00 2.87
2018 3767 3.440872 AGAACTACTCGCACTACCAGAAG 59.559 47.826 0.00 0.00 0.00 2.85
2019 3768 3.418995 AGAACTACTCGCACTACCAGAA 58.581 45.455 0.00 0.00 0.00 3.02
2020 3769 3.069079 AGAACTACTCGCACTACCAGA 57.931 47.619 0.00 0.00 0.00 3.86
2021 3770 3.940221 AGTAGAACTACTCGCACTACCAG 59.060 47.826 8.47 0.00 42.30 4.00
2022 3771 3.947868 AGTAGAACTACTCGCACTACCA 58.052 45.455 8.47 0.00 42.30 3.25
2023 3772 4.438472 CCAAGTAGAACTACTCGCACTACC 60.438 50.000 13.75 0.00 44.96 3.18
2024 3773 4.394300 TCCAAGTAGAACTACTCGCACTAC 59.606 45.833 13.75 0.00 44.96 2.73
2025 3774 4.582869 TCCAAGTAGAACTACTCGCACTA 58.417 43.478 13.75 0.00 44.96 2.74
2026 3775 3.418995 TCCAAGTAGAACTACTCGCACT 58.581 45.455 13.75 0.00 44.96 4.40
2027 3776 3.427773 CCTCCAAGTAGAACTACTCGCAC 60.428 52.174 13.75 0.00 44.96 5.34
2028 3777 2.753452 CCTCCAAGTAGAACTACTCGCA 59.247 50.000 13.75 2.08 44.96 5.10
2029 3778 2.479901 GCCTCCAAGTAGAACTACTCGC 60.480 54.545 13.75 8.02 44.96 5.03
2030 3779 2.223294 CGCCTCCAAGTAGAACTACTCG 60.223 54.545 13.75 8.85 44.96 4.18
2031 3780 2.099427 CCGCCTCCAAGTAGAACTACTC 59.901 54.545 13.75 1.69 44.96 2.59
2033 3782 2.097825 TCCGCCTCCAAGTAGAACTAC 58.902 52.381 4.05 4.05 36.35 2.73
2034 3783 2.025605 TCTCCGCCTCCAAGTAGAACTA 60.026 50.000 0.00 0.00 0.00 2.24
2035 3784 1.187087 CTCCGCCTCCAAGTAGAACT 58.813 55.000 0.00 0.00 0.00 3.01
2036 3785 1.135333 CTCTCCGCCTCCAAGTAGAAC 59.865 57.143 0.00 0.00 0.00 3.01
2037 3786 1.475403 CTCTCCGCCTCCAAGTAGAA 58.525 55.000 0.00 0.00 0.00 2.10
2038 3787 1.038130 GCTCTCCGCCTCCAAGTAGA 61.038 60.000 0.00 0.00 0.00 2.59
2039 3788 1.323271 TGCTCTCCGCCTCCAAGTAG 61.323 60.000 0.00 0.00 38.05 2.57
2040 3789 1.304962 TGCTCTCCGCCTCCAAGTA 60.305 57.895 0.00 0.00 38.05 2.24
2041 3790 2.604686 TGCTCTCCGCCTCCAAGT 60.605 61.111 0.00 0.00 38.05 3.16
2042 3791 2.125350 GTGCTCTCCGCCTCCAAG 60.125 66.667 0.00 0.00 38.05 3.61
2043 3792 3.706373 GGTGCTCTCCGCCTCCAA 61.706 66.667 0.00 0.00 41.07 3.53
2056 3805 1.743958 TCTACTACTTGAGCGAGGTGC 59.256 52.381 0.00 0.00 46.98 5.01
2057 3806 2.097791 GGTCTACTACTTGAGCGAGGTG 59.902 54.545 0.00 0.00 0.00 4.00
2058 3807 2.367486 GGTCTACTACTTGAGCGAGGT 58.633 52.381 0.00 0.00 0.00 3.85
2063 3812 1.134560 CACCCGGTCTACTACTTGAGC 59.865 57.143 0.00 0.00 0.00 4.26
2064 3813 1.134560 GCACCCGGTCTACTACTTGAG 59.865 57.143 0.00 0.00 0.00 3.02
2065 3814 1.180029 GCACCCGGTCTACTACTTGA 58.820 55.000 0.00 0.00 0.00 3.02
2066 3815 1.135083 CAGCACCCGGTCTACTACTTG 60.135 57.143 0.00 0.00 0.00 3.16
2067 3816 1.183549 CAGCACCCGGTCTACTACTT 58.816 55.000 0.00 0.00 0.00 2.24
2068 3817 0.683504 CCAGCACCCGGTCTACTACT 60.684 60.000 0.00 0.00 0.00 2.57
2069 3818 0.682209 TCCAGCACCCGGTCTACTAC 60.682 60.000 0.00 0.00 0.00 2.73
2070 3819 0.682209 GTCCAGCACCCGGTCTACTA 60.682 60.000 0.00 0.00 0.00 1.82
2071 3820 1.982938 GTCCAGCACCCGGTCTACT 60.983 63.158 0.00 0.00 0.00 2.57
2072 3821 2.577593 GTCCAGCACCCGGTCTAC 59.422 66.667 0.00 0.00 0.00 2.59
2073 3822 3.066190 CGTCCAGCACCCGGTCTA 61.066 66.667 0.00 0.00 0.00 2.59
2080 3829 3.628646 ATCCAAGCCGTCCAGCACC 62.629 63.158 0.00 0.00 34.23 5.01
2081 3830 2.045926 ATCCAAGCCGTCCAGCAC 60.046 61.111 0.00 0.00 34.23 4.40
2082 3831 1.841302 AAGATCCAAGCCGTCCAGCA 61.841 55.000 0.00 0.00 34.23 4.41
2083 3832 0.678048 AAAGATCCAAGCCGTCCAGC 60.678 55.000 0.00 0.00 0.00 4.85
2084 3833 1.373570 GAAAGATCCAAGCCGTCCAG 58.626 55.000 0.00 0.00 0.00 3.86
2085 3834 0.035439 GGAAAGATCCAAGCCGTCCA 60.035 55.000 0.00 0.00 45.79 4.02
2086 3835 2.781911 GGAAAGATCCAAGCCGTCC 58.218 57.895 0.00 0.00 45.79 4.79
2095 3844 2.840651 TGTCCAGAGAAGGGAAAGATCC 59.159 50.000 0.00 0.00 45.77 3.36
2096 3845 3.517500 AGTGTCCAGAGAAGGGAAAGATC 59.482 47.826 0.00 0.00 35.88 2.75
2097 3846 3.517500 GAGTGTCCAGAGAAGGGAAAGAT 59.482 47.826 0.00 0.00 35.88 2.40
2098 3847 2.900546 GAGTGTCCAGAGAAGGGAAAGA 59.099 50.000 0.00 0.00 35.88 2.52
2099 3848 2.353208 CGAGTGTCCAGAGAAGGGAAAG 60.353 54.545 0.00 0.00 35.88 2.62
2100 3849 1.618837 CGAGTGTCCAGAGAAGGGAAA 59.381 52.381 0.00 0.00 35.88 3.13
2101 3850 1.203013 TCGAGTGTCCAGAGAAGGGAA 60.203 52.381 0.00 0.00 35.88 3.97
2102 3851 0.404426 TCGAGTGTCCAGAGAAGGGA 59.596 55.000 0.00 0.00 0.00 4.20
2103 3852 0.528470 GTCGAGTGTCCAGAGAAGGG 59.472 60.000 0.00 0.00 0.00 3.95
2104 3853 0.528470 GGTCGAGTGTCCAGAGAAGG 59.472 60.000 0.00 0.00 0.00 3.46
2105 3854 1.068194 GTGGTCGAGTGTCCAGAGAAG 60.068 57.143 0.00 0.00 33.83 2.85
2106 3855 0.959553 GTGGTCGAGTGTCCAGAGAA 59.040 55.000 0.00 0.00 33.83 2.87
2107 3856 0.894184 GGTGGTCGAGTGTCCAGAGA 60.894 60.000 0.00 0.00 33.83 3.10
2108 3857 1.179174 TGGTGGTCGAGTGTCCAGAG 61.179 60.000 0.00 0.00 33.83 3.35
2109 3858 1.152631 TGGTGGTCGAGTGTCCAGA 60.153 57.895 0.00 0.00 33.83 3.86
2110 3859 1.006102 GTGGTGGTCGAGTGTCCAG 60.006 63.158 0.00 0.00 33.83 3.86
2111 3860 2.504274 GGTGGTGGTCGAGTGTCCA 61.504 63.158 0.00 0.00 0.00 4.02
2112 3861 1.827399 ATGGTGGTGGTCGAGTGTCC 61.827 60.000 0.00 0.00 0.00 4.02
2113 3862 0.389948 GATGGTGGTGGTCGAGTGTC 60.390 60.000 0.00 0.00 0.00 3.67
2114 3863 1.671742 GATGGTGGTGGTCGAGTGT 59.328 57.895 0.00 0.00 0.00 3.55
2115 3864 1.446099 CGATGGTGGTGGTCGAGTG 60.446 63.158 0.00 0.00 37.55 3.51
2116 3865 1.906824 ACGATGGTGGTGGTCGAGT 60.907 57.895 0.69 0.00 38.63 4.18
2117 3866 1.446099 CACGATGGTGGTGGTCGAG 60.446 63.158 0.00 0.00 40.58 4.04
2118 3867 2.654289 CACGATGGTGGTGGTCGA 59.346 61.111 0.00 0.00 40.58 4.20
2119 3868 3.118454 GCACGATGGTGGTGGTCG 61.118 66.667 10.06 0.00 44.54 4.79
2125 3874 1.141665 TCGATCAGCACGATGGTGG 59.858 57.895 10.06 0.00 45.21 4.61
2126 3875 1.148157 GGTCGATCAGCACGATGGTG 61.148 60.000 3.08 3.08 46.40 4.17
2127 3876 1.141881 GGTCGATCAGCACGATGGT 59.858 57.895 0.00 0.00 41.62 3.55
2128 3877 1.946156 CGGTCGATCAGCACGATGG 60.946 63.158 0.00 0.00 41.62 3.51
2129 3878 2.580470 GCGGTCGATCAGCACGATG 61.580 63.158 7.48 0.00 41.62 3.84
2130 3879 2.278857 GCGGTCGATCAGCACGAT 60.279 61.111 7.48 0.00 41.62 3.73
2131 3880 4.829518 CGCGGTCGATCAGCACGA 62.830 66.667 11.87 0.00 37.09 4.35
2132 3881 4.829518 TCGCGGTCGATCAGCACG 62.830 66.667 6.13 2.81 40.21 5.34
2133 3882 2.951745 CTCGCGGTCGATCAGCAC 60.952 66.667 6.13 0.00 44.56 4.40
2134 3883 4.193334 CCTCGCGGTCGATCAGCA 62.193 66.667 6.13 0.83 44.56 4.41
2135 3884 4.194720 ACCTCGCGGTCGATCAGC 62.195 66.667 6.13 0.00 44.56 4.26
2136 3885 2.278206 CACCTCGCGGTCGATCAG 60.278 66.667 6.13 0.00 43.24 2.90
2137 3886 3.822192 CCACCTCGCGGTCGATCA 61.822 66.667 6.13 0.00 43.24 2.92
2138 3887 3.471244 CTCCACCTCGCGGTCGATC 62.471 68.421 6.13 0.00 43.24 3.69
2139 3888 3.518998 CTCCACCTCGCGGTCGAT 61.519 66.667 6.13 0.00 43.24 3.59
2144 3893 4.473520 ATTGCCTCCACCTCGCGG 62.474 66.667 6.13 0.00 0.00 6.46
2145 3894 2.572095 TACATTGCCTCCACCTCGCG 62.572 60.000 0.00 0.00 0.00 5.87
2146 3895 0.811616 CTACATTGCCTCCACCTCGC 60.812 60.000 0.00 0.00 0.00 5.03
2147 3896 0.824109 TCTACATTGCCTCCACCTCG 59.176 55.000 0.00 0.00 0.00 4.63
2148 3897 1.555075 TGTCTACATTGCCTCCACCTC 59.445 52.381 0.00 0.00 0.00 3.85
2149 3898 1.656587 TGTCTACATTGCCTCCACCT 58.343 50.000 0.00 0.00 0.00 4.00
2150 3899 2.488153 GTTTGTCTACATTGCCTCCACC 59.512 50.000 0.00 0.00 0.00 4.61
2151 3900 3.146066 TGTTTGTCTACATTGCCTCCAC 58.854 45.455 0.00 0.00 0.00 4.02
2152 3901 3.411446 CTGTTTGTCTACATTGCCTCCA 58.589 45.455 0.00 0.00 0.00 3.86
2153 3902 2.162408 GCTGTTTGTCTACATTGCCTCC 59.838 50.000 0.00 0.00 0.00 4.30
2154 3903 2.159653 CGCTGTTTGTCTACATTGCCTC 60.160 50.000 0.00 0.00 0.00 4.70
2155 3904 1.806542 CGCTGTTTGTCTACATTGCCT 59.193 47.619 0.00 0.00 0.00 4.75
2156 3905 1.135689 CCGCTGTTTGTCTACATTGCC 60.136 52.381 0.00 0.00 0.00 4.52
2157 3906 1.729149 GCCGCTGTTTGTCTACATTGC 60.729 52.381 0.00 0.00 0.00 3.56
2158 3907 1.806542 AGCCGCTGTTTGTCTACATTG 59.193 47.619 0.00 0.00 0.00 2.82
2159 3908 2.076863 GAGCCGCTGTTTGTCTACATT 58.923 47.619 0.00 0.00 0.00 2.71
2160 3909 1.676014 GGAGCCGCTGTTTGTCTACAT 60.676 52.381 0.00 0.00 0.00 2.29
2161 3910 0.320421 GGAGCCGCTGTTTGTCTACA 60.320 55.000 0.00 0.00 0.00 2.74
2162 3911 0.037232 AGGAGCCGCTGTTTGTCTAC 60.037 55.000 0.00 0.00 0.00 2.59
2163 3912 0.685097 AAGGAGCCGCTGTTTGTCTA 59.315 50.000 0.00 0.00 0.00 2.59
2164 3913 0.603975 GAAGGAGCCGCTGTTTGTCT 60.604 55.000 0.00 0.00 0.00 3.41
2165 3914 0.603975 AGAAGGAGCCGCTGTTTGTC 60.604 55.000 0.00 0.00 0.00 3.18
2166 3915 0.603975 GAGAAGGAGCCGCTGTTTGT 60.604 55.000 0.00 0.00 0.00 2.83
2167 3916 1.630244 CGAGAAGGAGCCGCTGTTTG 61.630 60.000 0.00 0.00 0.00 2.93
2168 3917 1.374758 CGAGAAGGAGCCGCTGTTT 60.375 57.895 0.00 0.00 0.00 2.83
2169 3918 2.262915 CGAGAAGGAGCCGCTGTT 59.737 61.111 0.00 0.00 0.00 3.16
2170 3919 4.443266 GCGAGAAGGAGCCGCTGT 62.443 66.667 0.00 0.00 44.83 4.40
2174 3923 2.510238 CCAAGCGAGAAGGAGCCG 60.510 66.667 0.00 0.00 0.00 5.52
2175 3924 1.743252 CACCAAGCGAGAAGGAGCC 60.743 63.158 0.00 0.00 0.00 4.70
2176 3925 2.394563 GCACCAAGCGAGAAGGAGC 61.395 63.158 0.00 0.00 32.16 4.70
2177 3926 3.882025 GCACCAAGCGAGAAGGAG 58.118 61.111 0.00 0.00 0.00 3.69
2205 3954 2.520536 ATATGCTCTCCACCGCCCC 61.521 63.158 0.00 0.00 0.00 5.80
2206 3955 1.302033 CATATGCTCTCCACCGCCC 60.302 63.158 0.00 0.00 0.00 6.13
2207 3956 1.963338 GCATATGCTCTCCACCGCC 60.963 63.158 20.64 0.00 38.21 6.13
2208 3957 3.647824 GCATATGCTCTCCACCGC 58.352 61.111 20.64 0.00 38.21 5.68
2218 3967 5.759963 CTTTTCAGGATCTCAAGCATATGC 58.240 41.667 20.36 20.36 42.49 3.14
2219 3968 5.278364 GGCTTTTCAGGATCTCAAGCATATG 60.278 44.000 0.00 0.00 41.42 1.78
2220 3969 4.826183 GGCTTTTCAGGATCTCAAGCATAT 59.174 41.667 13.21 0.00 41.42 1.78
2221 3970 4.080129 AGGCTTTTCAGGATCTCAAGCATA 60.080 41.667 13.21 0.00 41.42 3.14
2222 3971 3.022406 GGCTTTTCAGGATCTCAAGCAT 58.978 45.455 13.21 0.00 41.42 3.79
2223 3972 2.040813 AGGCTTTTCAGGATCTCAAGCA 59.959 45.455 13.21 0.00 41.42 3.91
2224 3973 2.682352 GAGGCTTTTCAGGATCTCAAGC 59.318 50.000 0.00 0.00 39.35 4.01
2225 3974 2.935201 CGAGGCTTTTCAGGATCTCAAG 59.065 50.000 0.00 0.00 0.00 3.02
2226 3975 2.303022 ACGAGGCTTTTCAGGATCTCAA 59.697 45.455 0.00 0.00 0.00 3.02
2227 3976 1.902508 ACGAGGCTTTTCAGGATCTCA 59.097 47.619 0.00 0.00 0.00 3.27
2228 3977 2.545731 GACGAGGCTTTTCAGGATCTC 58.454 52.381 0.00 0.00 0.00 2.75
2229 3978 1.208293 GGACGAGGCTTTTCAGGATCT 59.792 52.381 0.00 0.00 0.00 2.75
2230 3979 1.066143 TGGACGAGGCTTTTCAGGATC 60.066 52.381 0.00 0.00 0.00 3.36
2231 3980 0.984230 TGGACGAGGCTTTTCAGGAT 59.016 50.000 0.00 0.00 0.00 3.24
2232 3981 0.034896 GTGGACGAGGCTTTTCAGGA 59.965 55.000 0.00 0.00 0.00 3.86
2233 3982 0.955919 GGTGGACGAGGCTTTTCAGG 60.956 60.000 0.00 0.00 0.00 3.86
2234 3983 0.035458 AGGTGGACGAGGCTTTTCAG 59.965 55.000 0.00 0.00 0.00 3.02
2235 3984 0.250295 CAGGTGGACGAGGCTTTTCA 60.250 55.000 0.00 0.00 0.00 2.69
2236 3985 0.955919 CCAGGTGGACGAGGCTTTTC 60.956 60.000 0.00 0.00 37.39 2.29
2237 3986 1.073199 CCAGGTGGACGAGGCTTTT 59.927 57.895 0.00 0.00 37.39 2.27
2238 3987 2.113243 GACCAGGTGGACGAGGCTTT 62.113 60.000 0.00 0.00 38.94 3.51
2239 3988 2.526873 ACCAGGTGGACGAGGCTT 60.527 61.111 2.10 0.00 38.94 4.35
2240 3989 2.997897 GACCAGGTGGACGAGGCT 60.998 66.667 0.00 0.00 38.94 4.58
2246 3995 3.144285 TGGAACGACCAGGTGGAC 58.856 61.111 8.91 2.11 44.64 4.02
2259 4008 2.089936 CGACGCCGTTCGAATGGAA 61.090 57.895 35.31 0.00 41.78 3.53
2260 4009 2.505337 CGACGCCGTTCGAATGGA 60.505 61.111 35.31 0.00 41.78 3.41
2270 4019 0.456142 TGATGAAGAAGACGACGCCG 60.456 55.000 0.00 0.00 42.50 6.46
2271 4020 1.272781 CTGATGAAGAAGACGACGCC 58.727 55.000 0.00 0.00 0.00 5.68
2272 4021 1.272781 CCTGATGAAGAAGACGACGC 58.727 55.000 0.00 0.00 0.00 5.19
2273 4022 2.095212 TCACCTGATGAAGAAGACGACG 60.095 50.000 0.00 0.00 33.02 5.12
2274 4023 3.577649 TCACCTGATGAAGAAGACGAC 57.422 47.619 0.00 0.00 33.02 4.34
2275 4024 4.705023 TGTATCACCTGATGAAGAAGACGA 59.295 41.667 0.00 0.00 41.93 4.20
2276 4025 4.998788 TGTATCACCTGATGAAGAAGACG 58.001 43.478 0.00 0.00 41.93 4.18
2277 4026 5.355596 CCTGTATCACCTGATGAAGAAGAC 58.644 45.833 0.00 0.00 41.93 3.01
2278 4027 4.406972 CCCTGTATCACCTGATGAAGAAGA 59.593 45.833 0.00 0.00 41.93 2.87
2279 4028 4.444022 CCCCTGTATCACCTGATGAAGAAG 60.444 50.000 0.00 0.00 41.93 2.85
2280 4029 3.455910 CCCCTGTATCACCTGATGAAGAA 59.544 47.826 0.00 0.00 41.93 2.52
2281 4030 3.041211 CCCCTGTATCACCTGATGAAGA 58.959 50.000 0.00 0.00 41.93 2.87
2282 4031 2.486191 GCCCCTGTATCACCTGATGAAG 60.486 54.545 0.00 0.00 41.93 3.02
2283 4032 1.490490 GCCCCTGTATCACCTGATGAA 59.510 52.381 0.00 0.00 41.93 2.57
2284 4033 1.131638 GCCCCTGTATCACCTGATGA 58.868 55.000 0.00 0.00 43.13 2.92
2285 4034 0.839277 TGCCCCTGTATCACCTGATG 59.161 55.000 0.00 0.00 36.05 3.07
2286 4035 1.492176 CTTGCCCCTGTATCACCTGAT 59.508 52.381 0.00 0.00 38.51 2.90
2287 4036 0.911769 CTTGCCCCTGTATCACCTGA 59.088 55.000 0.00 0.00 0.00 3.86
2288 4037 0.107017 CCTTGCCCCTGTATCACCTG 60.107 60.000 0.00 0.00 0.00 4.00
2289 4038 1.926426 GCCTTGCCCCTGTATCACCT 61.926 60.000 0.00 0.00 0.00 4.00
2290 4039 1.453928 GCCTTGCCCCTGTATCACC 60.454 63.158 0.00 0.00 0.00 4.02
2291 4040 1.453928 GGCCTTGCCCCTGTATCAC 60.454 63.158 0.00 0.00 44.06 3.06
2292 4041 3.006677 GGCCTTGCCCCTGTATCA 58.993 61.111 0.00 0.00 44.06 2.15
2302 4051 1.077429 CTGGGTAAGAGGGCCTTGC 60.077 63.158 7.89 0.00 36.34 4.01
2303 4052 1.077429 GCTGGGTAAGAGGGCCTTG 60.077 63.158 7.89 0.00 36.34 3.61
2304 4053 2.309504 GGCTGGGTAAGAGGGCCTT 61.310 63.158 7.89 0.00 39.68 4.35
2305 4054 2.692741 GGCTGGGTAAGAGGGCCT 60.693 66.667 5.25 5.25 39.68 5.19
2306 4055 4.176752 CGGCTGGGTAAGAGGGCC 62.177 72.222 0.00 0.00 39.43 5.80
2307 4056 4.176752 CCGGCTGGGTAAGAGGGC 62.177 72.222 2.57 0.00 0.00 5.19
2308 4057 4.176752 GCCGGCTGGGTAAGAGGG 62.177 72.222 22.15 0.00 38.44 4.30
2309 4058 3.083997 AGCCGGCTGGGTAAGAGG 61.084 66.667 32.33 0.00 46.40 3.69
2310 4059 2.187946 CAGCCGGCTGGGTAAGAG 59.812 66.667 42.81 19.64 46.57 2.85
2311 4060 2.284331 TCAGCCGGCTGGGTAAGA 60.284 61.111 46.58 29.47 46.57 2.10
2312 4061 1.899437 TTCTCAGCCGGCTGGGTAAG 61.899 60.000 46.22 36.89 46.57 2.34
2313 4062 1.485294 TTTCTCAGCCGGCTGGGTAA 61.485 55.000 46.22 41.16 46.57 2.85
2314 4063 1.916273 TTTCTCAGCCGGCTGGGTA 60.916 57.895 46.22 38.57 46.57 3.69
2316 4065 2.747855 GTTTCTCAGCCGGCTGGG 60.748 66.667 46.58 45.64 45.48 4.45
2317 4066 2.747855 GGTTTCTCAGCCGGCTGG 60.748 66.667 46.58 37.08 43.75 4.85
2318 4067 3.121030 CGGTTTCTCAGCCGGCTG 61.121 66.667 44.24 44.24 43.85 4.85
2322 4071 3.121030 CAGCCGGTTTCTCAGCCG 61.121 66.667 1.90 0.00 46.80 5.52
2323 4072 2.035442 GTCAGCCGGTTTCTCAGCC 61.035 63.158 1.90 0.00 0.00 4.85
2324 4073 2.035442 GGTCAGCCGGTTTCTCAGC 61.035 63.158 1.90 0.00 0.00 4.26
2325 4074 4.285851 GGTCAGCCGGTTTCTCAG 57.714 61.111 1.90 0.00 0.00 3.35
2336 4085 1.440145 GCTATTTGGCCTCGGTCAGC 61.440 60.000 3.32 1.34 0.00 4.26
2337 4086 0.179000 AGCTATTTGGCCTCGGTCAG 59.821 55.000 3.32 0.00 0.00 3.51
2338 4087 0.107703 CAGCTATTTGGCCTCGGTCA 60.108 55.000 3.32 0.00 0.00 4.02
2339 4088 0.815615 CCAGCTATTTGGCCTCGGTC 60.816 60.000 3.32 0.00 0.00 4.79
2340 4089 1.224592 CCAGCTATTTGGCCTCGGT 59.775 57.895 3.32 0.00 0.00 4.69
2341 4090 1.097547 CACCAGCTATTTGGCCTCGG 61.098 60.000 3.32 0.00 42.18 4.63
2342 4091 0.107703 TCACCAGCTATTTGGCCTCG 60.108 55.000 3.32 0.00 42.18 4.63
2343 4092 1.745653 GTTCACCAGCTATTTGGCCTC 59.254 52.381 3.32 0.00 42.18 4.70
2344 4093 1.355720 AGTTCACCAGCTATTTGGCCT 59.644 47.619 3.32 0.00 42.18 5.19
2345 4094 1.839424 AGTTCACCAGCTATTTGGCC 58.161 50.000 0.00 0.00 42.18 5.36
2346 4095 4.202050 CCATAAGTTCACCAGCTATTTGGC 60.202 45.833 0.00 0.00 42.18 4.52
2347 4096 5.066505 GTCCATAAGTTCACCAGCTATTTGG 59.933 44.000 0.00 0.00 44.09 3.28
2348 4097 5.647658 TGTCCATAAGTTCACCAGCTATTTG 59.352 40.000 0.00 0.00 0.00 2.32
2349 4098 5.815581 TGTCCATAAGTTCACCAGCTATTT 58.184 37.500 0.00 0.00 0.00 1.40
2350 4099 5.435686 TGTCCATAAGTTCACCAGCTATT 57.564 39.130 0.00 0.00 0.00 1.73
2351 4100 5.615289 GATGTCCATAAGTTCACCAGCTAT 58.385 41.667 0.00 0.00 0.00 2.97
2352 4101 4.441495 CGATGTCCATAAGTTCACCAGCTA 60.441 45.833 0.00 0.00 0.00 3.32
2353 4102 3.679917 CGATGTCCATAAGTTCACCAGCT 60.680 47.826 0.00 0.00 0.00 4.24
2354 4103 2.609459 CGATGTCCATAAGTTCACCAGC 59.391 50.000 0.00 0.00 0.00 4.85
2355 4104 2.609459 GCGATGTCCATAAGTTCACCAG 59.391 50.000 0.00 0.00 0.00 4.00
2356 4105 2.627945 GCGATGTCCATAAGTTCACCA 58.372 47.619 0.00 0.00 0.00 4.17
2357 4106 1.593006 CGCGATGTCCATAAGTTCACC 59.407 52.381 0.00 0.00 0.00 4.02
2358 4107 1.004927 GCGCGATGTCCATAAGTTCAC 60.005 52.381 12.10 0.00 0.00 3.18
2359 4108 1.286501 GCGCGATGTCCATAAGTTCA 58.713 50.000 12.10 0.00 0.00 3.18
2360 4109 1.258982 CTGCGCGATGTCCATAAGTTC 59.741 52.381 12.10 0.00 0.00 3.01
2361 4110 1.290203 CTGCGCGATGTCCATAAGTT 58.710 50.000 12.10 0.00 0.00 2.66
2362 4111 1.154205 GCTGCGCGATGTCCATAAGT 61.154 55.000 12.10 0.00 0.00 2.24
2363 4112 1.566563 GCTGCGCGATGTCCATAAG 59.433 57.895 12.10 0.00 0.00 1.73
2364 4113 1.887242 GGCTGCGCGATGTCCATAA 60.887 57.895 12.10 0.00 0.00 1.90
2365 4114 2.280119 GGCTGCGCGATGTCCATA 60.280 61.111 12.10 0.00 0.00 2.74
2395 4144 3.578515 AAGGCCAACAAGCGCATGC 62.579 57.895 13.36 7.91 43.24 4.06
2396 4145 1.735198 CAAGGCCAACAAGCGCATG 60.735 57.895 11.47 11.60 0.00 4.06
2397 4146 1.252904 ATCAAGGCCAACAAGCGCAT 61.253 50.000 11.47 0.00 0.00 4.73
2398 4147 1.865788 GATCAAGGCCAACAAGCGCA 61.866 55.000 11.47 0.00 0.00 6.09
2399 4148 1.153958 GATCAAGGCCAACAAGCGC 60.154 57.895 5.01 0.00 0.00 5.92
2400 4149 0.883833 AAGATCAAGGCCAACAAGCG 59.116 50.000 5.01 0.00 0.00 4.68
2401 4150 2.163211 GAGAAGATCAAGGCCAACAAGC 59.837 50.000 5.01 0.00 0.00 4.01
2402 4151 2.751806 GGAGAAGATCAAGGCCAACAAG 59.248 50.000 5.01 0.00 0.00 3.16
2403 4152 2.376518 AGGAGAAGATCAAGGCCAACAA 59.623 45.455 5.01 0.00 0.00 2.83
2404 4153 1.988107 AGGAGAAGATCAAGGCCAACA 59.012 47.619 5.01 0.00 0.00 3.33
2405 4154 2.363683 CAGGAGAAGATCAAGGCCAAC 58.636 52.381 5.01 0.00 0.00 3.77
2406 4155 1.283029 CCAGGAGAAGATCAAGGCCAA 59.717 52.381 5.01 0.00 0.00 4.52
2407 4156 0.914644 CCAGGAGAAGATCAAGGCCA 59.085 55.000 5.01 0.00 0.00 5.36
2408 4157 0.915364 ACCAGGAGAAGATCAAGGCC 59.085 55.000 0.00 0.00 0.00 5.19
2409 4158 2.637947 GAACCAGGAGAAGATCAAGGC 58.362 52.381 0.00 0.00 0.00 4.35
2410 4159 2.898705 CGAACCAGGAGAAGATCAAGG 58.101 52.381 0.00 0.00 0.00 3.61
2411 4160 2.275318 GCGAACCAGGAGAAGATCAAG 58.725 52.381 0.00 0.00 0.00 3.02
2412 4161 1.066143 GGCGAACCAGGAGAAGATCAA 60.066 52.381 0.00 0.00 35.26 2.57
2413 4162 0.537188 GGCGAACCAGGAGAAGATCA 59.463 55.000 0.00 0.00 35.26 2.92
2414 4163 0.827368 AGGCGAACCAGGAGAAGATC 59.173 55.000 0.00 0.00 39.06 2.75
2415 4164 0.827368 GAGGCGAACCAGGAGAAGAT 59.173 55.000 0.00 0.00 39.06 2.40
2416 4165 0.541998 TGAGGCGAACCAGGAGAAGA 60.542 55.000 0.00 0.00 39.06 2.87
2417 4166 0.321671 TTGAGGCGAACCAGGAGAAG 59.678 55.000 0.00 0.00 39.06 2.85
2418 4167 0.984230 ATTGAGGCGAACCAGGAGAA 59.016 50.000 0.00 0.00 39.06 2.87
2419 4168 0.250234 CATTGAGGCGAACCAGGAGA 59.750 55.000 0.00 0.00 39.06 3.71
2420 4169 0.036010 ACATTGAGGCGAACCAGGAG 60.036 55.000 0.00 0.00 39.06 3.69
2421 4170 0.036388 GACATTGAGGCGAACCAGGA 60.036 55.000 0.00 0.00 39.06 3.86
2422 4171 0.321564 TGACATTGAGGCGAACCAGG 60.322 55.000 0.00 0.00 39.06 4.45
2423 4172 0.798776 GTGACATTGAGGCGAACCAG 59.201 55.000 0.00 0.00 39.06 4.00
2424 4173 0.948623 CGTGACATTGAGGCGAACCA 60.949 55.000 0.00 0.00 39.06 3.67
2425 4174 1.787847 CGTGACATTGAGGCGAACC 59.212 57.895 0.00 0.00 0.00 3.62
2426 4175 1.132640 GCGTGACATTGAGGCGAAC 59.867 57.895 0.00 0.00 0.00 3.95
2427 4176 3.561429 GCGTGACATTGAGGCGAA 58.439 55.556 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.