Multiple sequence alignment - TraesCS3A01G267500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3A01G267500
chr3A
100.000
3152
0
0
1
3152
492738467
492735316
0.000000e+00
5821.0
1
TraesCS3A01G267500
chr3A
98.039
51
1
0
1
51
101441849
101441899
4.330000e-14
89.8
2
TraesCS3A01G267500
chr3A
98.039
51
1
0
1
51
333328266
333328316
4.330000e-14
89.8
3
TraesCS3A01G267500
chr3A
98.039
51
1
0
1
51
529744929
529744979
4.330000e-14
89.8
4
TraesCS3A01G267500
chr3D
93.166
3029
138
20
103
3105
371871590
371868605
0.000000e+00
4383.0
5
TraesCS3A01G267500
chr3B
92.577
3085
160
29
52
3105
482786231
482783185
0.000000e+00
4364.0
6
TraesCS3A01G267500
chr1B
78.579
929
173
19
1112
2030
638783744
638782832
9.740000e-165
590.0
7
TraesCS3A01G267500
chr1B
78.335
937
173
22
1109
2030
638821853
638820932
2.110000e-161
579.0
8
TraesCS3A01G267500
chr1D
77.908
937
177
22
1109
2030
463326368
463325447
9.880000e-155
556.0
9
TraesCS3A01G267500
chr1D
98.039
51
1
0
2
52
384739899
384739849
4.330000e-14
89.8
10
TraesCS3A01G267500
chr1A
77.801
937
178
22
1109
2030
555523073
555522152
4.590000e-153
551.0
11
TraesCS3A01G267500
chr1A
77.326
935
174
30
1112
2030
555484955
555484043
4.660000e-143
518.0
12
TraesCS3A01G267500
chr7A
98.039
51
1
0
1
51
123244956
123244906
4.330000e-14
89.8
13
TraesCS3A01G267500
chr5B
96.296
54
1
1
1
54
660212237
660212185
1.560000e-13
87.9
14
TraesCS3A01G267500
chr4D
96.226
53
2
0
1
53
494149274
494149222
1.560000e-13
87.9
15
TraesCS3A01G267500
chr2A
98.000
50
1
0
1
50
102328478
102328527
1.560000e-13
87.9
16
TraesCS3A01G267500
chr7B
93.103
58
4
0
1
58
732473915
732473858
5.600000e-13
86.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3A01G267500
chr3A
492735316
492738467
3151
True
5821
5821
100.000
1
3152
1
chr3A.!!$R1
3151
1
TraesCS3A01G267500
chr3D
371868605
371871590
2985
True
4383
4383
93.166
103
3105
1
chr3D.!!$R1
3002
2
TraesCS3A01G267500
chr3B
482783185
482786231
3046
True
4364
4364
92.577
52
3105
1
chr3B.!!$R1
3053
3
TraesCS3A01G267500
chr1B
638782832
638783744
912
True
590
590
78.579
1112
2030
1
chr1B.!!$R1
918
4
TraesCS3A01G267500
chr1B
638820932
638821853
921
True
579
579
78.335
1109
2030
1
chr1B.!!$R2
921
5
TraesCS3A01G267500
chr1D
463325447
463326368
921
True
556
556
77.908
1109
2030
1
chr1D.!!$R2
921
6
TraesCS3A01G267500
chr1A
555522152
555523073
921
True
551
551
77.801
1109
2030
1
chr1A.!!$R2
921
7
TraesCS3A01G267500
chr1A
555484043
555484955
912
True
518
518
77.326
1112
2030
1
chr1A.!!$R1
918
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
207
208
0.107993
CTTCATCCTCCTTGAGCGCA
60.108
55.0
11.47
0.0
0.0
6.09
F
2121
2179
0.179078
TTACAAGTGGCGACGTTGGT
60.179
50.0
4.64
0.0
0.0
3.67
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2130
2188
0.458260
AAACGGTTTCAACTGCACCC
59.542
50.0
0.0
0.0
38.89
4.61
R
3105
3170
2.223805
CCTCTCAACCAACCAAACTTGC
60.224
50.0
0.0
0.0
0.00
4.01
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
34
35
8.818057
ACAAAAGATAGATGTACACTTATTCGC
58.182
33.333
0.00
0.00
0.00
4.70
35
36
7.624706
AAAGATAGATGTACACTTATTCGCG
57.375
36.000
0.00
0.00
0.00
5.87
36
37
5.700846
AGATAGATGTACACTTATTCGCGG
58.299
41.667
6.13
0.00
0.00
6.46
37
38
5.472478
AGATAGATGTACACTTATTCGCGGA
59.528
40.000
6.13
0.00
0.00
5.54
38
39
3.703420
AGATGTACACTTATTCGCGGAC
58.297
45.455
6.13
0.00
0.00
4.79
39
40
1.898938
TGTACACTTATTCGCGGACG
58.101
50.000
6.13
0.00
42.01
4.79
40
41
1.194495
GTACACTTATTCGCGGACGG
58.806
55.000
6.13
0.00
40.63
4.79
41
42
1.093972
TACACTTATTCGCGGACGGA
58.906
50.000
6.13
0.00
40.63
4.69
42
43
0.179145
ACACTTATTCGCGGACGGAG
60.179
55.000
6.13
0.00
40.63
4.63
43
44
0.870307
CACTTATTCGCGGACGGAGG
60.870
60.000
6.13
0.00
40.63
4.30
44
45
1.299926
CTTATTCGCGGACGGAGGG
60.300
63.158
6.13
0.00
40.63
4.30
45
46
1.731433
CTTATTCGCGGACGGAGGGA
61.731
60.000
6.13
0.00
40.63
4.20
46
47
1.731433
TTATTCGCGGACGGAGGGAG
61.731
60.000
6.13
0.00
40.63
4.30
47
48
2.898920
TATTCGCGGACGGAGGGAGT
62.899
60.000
6.13
0.00
40.63
3.85
48
49
2.898920
ATTCGCGGACGGAGGGAGTA
62.899
60.000
6.13
0.00
40.63
2.59
49
50
2.898920
TTCGCGGACGGAGGGAGTAT
62.899
60.000
6.13
0.00
40.63
2.12
50
51
1.598962
CGCGGACGGAGGGAGTATA
60.599
63.158
0.00
0.00
34.97
1.47
90
91
4.635765
CACCGGTGAAAAGTATGATGTGAT
59.364
41.667
31.31
0.00
0.00
3.06
115
116
1.946984
AGGGTTTGGTCAGGTATCGA
58.053
50.000
0.00
0.00
0.00
3.59
186
187
0.896923
GAAATCCAATGGCCAGCACA
59.103
50.000
13.05
0.00
0.00
4.57
206
207
0.813210
CCTTCATCCTCCTTGAGCGC
60.813
60.000
0.00
0.00
0.00
5.92
207
208
0.107993
CTTCATCCTCCTTGAGCGCA
60.108
55.000
11.47
0.00
0.00
6.09
212
213
0.391661
TCCTCCTTGAGCGCAATCAC
60.392
55.000
11.47
0.00
32.68
3.06
224
226
1.209621
GCAATCACCCCCTACACCTA
58.790
55.000
0.00
0.00
0.00
3.08
232
234
2.197465
CCCCCTACACCTAGCTTCTTT
58.803
52.381
0.00
0.00
0.00
2.52
273
275
2.055838
CATCTTTTCCGACGACGACAA
58.944
47.619
9.28
0.00
42.66
3.18
276
278
1.790623
CTTTTCCGACGACGACAACAT
59.209
47.619
9.28
0.00
42.66
2.71
314
317
1.953017
CTCTGGCGAGGTCCTATCG
59.047
63.158
0.00
0.00
43.00
2.92
416
419
7.476540
TTAGGTCTAAGCAATCACTTAGTGA
57.523
36.000
17.87
17.87
46.13
3.41
430
439
9.899226
AATCACTTAGTGAAAAAGATTACTTGC
57.101
29.630
19.42
0.00
45.96
4.01
431
440
8.445275
TCACTTAGTGAAAAAGATTACTTGCA
57.555
30.769
13.16
0.00
39.78
4.08
432
441
8.342634
TCACTTAGTGAAAAAGATTACTTGCAC
58.657
33.333
13.16
0.00
39.78
4.57
433
442
7.591426
CACTTAGTGAAAAAGATTACTTGCACC
59.409
37.037
6.50
0.00
35.79
5.01
434
443
7.284489
ACTTAGTGAAAAAGATTACTTGCACCA
59.716
33.333
0.00
0.00
35.79
4.17
435
444
6.076981
AGTGAAAAAGATTACTTGCACCAG
57.923
37.500
0.00
0.00
35.79
4.00
488
497
2.531326
GTTTGCCCCTTCCCCCTT
59.469
61.111
0.00
0.00
0.00
3.95
519
528
2.358737
CAACCCTCTGCCACGTCC
60.359
66.667
0.00
0.00
0.00
4.79
532
541
2.488355
CGTCCATGTAGGCGACGT
59.512
61.111
11.76
0.00
43.29
4.34
533
542
1.153901
CGTCCATGTAGGCGACGTT
60.154
57.895
11.76
0.00
43.29
3.99
535
544
1.447140
TCCATGTAGGCGACGTTGC
60.447
57.895
19.96
19.96
37.29
4.17
593
602
2.954611
CTCGCTGAGGACGACACA
59.045
61.111
0.00
0.00
35.35
3.72
727
758
8.732746
ATACTACTAGTTTGCATTAACAAGGG
57.267
34.615
0.00
0.00
0.00
3.95
840
871
3.568430
GCTTCCATTATTTTACTCCCCCG
59.432
47.826
0.00
0.00
0.00
5.73
854
885
1.116308
CCCCCGTCACAAAAAGGTTT
58.884
50.000
0.00
0.00
0.00
3.27
868
903
5.959618
AAAAGGTTTGTAAATCTCCTCCG
57.040
39.130
0.00
0.00
0.00
4.63
904
939
2.234300
TCGTAATCTCCCGCAAATCC
57.766
50.000
0.00
0.00
0.00
3.01
958
993
1.229984
CCCCTTTCCCTCCTCACCT
60.230
63.158
0.00
0.00
0.00
4.00
966
1001
1.992277
CCTCCTCACCTCACCCCAG
60.992
68.421
0.00
0.00
0.00
4.45
1317
1366
2.047750
TTGCTCATGGCGTGCGTA
60.048
55.556
0.65
0.00
45.43
4.42
2121
2179
0.179078
TTACAAGTGGCGACGTTGGT
60.179
50.000
4.64
0.00
0.00
3.67
2122
2180
0.876777
TACAAGTGGCGACGTTGGTG
60.877
55.000
4.64
3.27
0.00
4.17
2123
2181
1.885388
CAAGTGGCGACGTTGGTGA
60.885
57.895
4.64
0.00
0.00
4.02
2124
2182
1.594293
AAGTGGCGACGTTGGTGAG
60.594
57.895
4.64
0.00
0.00
3.51
2125
2183
2.989055
AAGTGGCGACGTTGGTGAGG
62.989
60.000
4.64
0.00
0.00
3.86
2126
2184
4.308458
TGGCGACGTTGGTGAGGG
62.308
66.667
4.64
0.00
0.00
4.30
2127
2185
3.998672
GGCGACGTTGGTGAGGGA
61.999
66.667
4.64
0.00
0.00
4.20
2128
2186
2.432628
GCGACGTTGGTGAGGGAG
60.433
66.667
4.64
0.00
0.00
4.30
2129
2187
2.261671
CGACGTTGGTGAGGGAGG
59.738
66.667
0.00
0.00
0.00
4.30
2130
2188
2.663196
GACGTTGGTGAGGGAGGG
59.337
66.667
0.00
0.00
0.00
4.30
2160
2218
5.469084
AGTTGAAACCGTTTGATCTAACCTC
59.531
40.000
13.34
6.75
0.00
3.85
2236
2294
9.702253
ATCTCAAAGGAAGTACATCTAGTCTAA
57.298
33.333
0.00
0.00
0.00
2.10
2256
2314
9.606631
AGTCTAATTGCACCTATTTCTAAGAAG
57.393
33.333
0.00
0.00
0.00
2.85
2379
2441
2.955660
GAGGTTGGTGATTGTGGTTTGA
59.044
45.455
0.00
0.00
0.00
2.69
2394
2456
3.196469
TGGTTTGATGGTTGCTTGTTTGA
59.804
39.130
0.00
0.00
0.00
2.69
2449
2511
5.314923
ACGAAATGGAAGGATGTTTGATG
57.685
39.130
0.00
0.00
0.00
3.07
2455
2517
4.933134
TGGAAGGATGTTTGATGATGGAA
58.067
39.130
0.00
0.00
0.00
3.53
2513
2578
6.293004
TCTTCACAAAATGTTGGTTCCTTT
57.707
33.333
0.00
0.00
39.22
3.11
2514
2579
7.411486
TCTTCACAAAATGTTGGTTCCTTTA
57.589
32.000
0.00
0.00
39.22
1.85
2532
2597
4.282195
CCTTTAGAGCCTAATCGGTGATCT
59.718
45.833
0.00
0.00
34.25
2.75
2533
2598
5.221541
CCTTTAGAGCCTAATCGGTGATCTT
60.222
44.000
0.00
0.00
34.25
2.40
2537
2602
5.141182
AGAGCCTAATCGGTGATCTTCTAA
58.859
41.667
0.00
0.00
34.25
2.10
2559
2624
8.625651
TCTAACAGAAGAGAGAAATATTCCTCG
58.374
37.037
0.00
0.00
34.34
4.63
2563
2628
4.599047
AGAGAGAAATATTCCTCGGCTG
57.401
45.455
0.00
0.00
34.34
4.85
2578
2643
0.610232
GGCTGGACTGCTCCAAATGT
60.610
55.000
0.00
0.00
46.63
2.71
2597
2662
4.727507
TGTTGCCTTGTTTTGTGTACAT
57.272
36.364
0.00
0.00
0.00
2.29
2615
2680
6.465781
GTGTACATGCGTCAACAATTTATCTG
59.534
38.462
0.00
0.00
0.00
2.90
2666
2731
4.539870
CTTGTGTCATTGTGGAATGTGAC
58.460
43.478
0.00
0.00
40.09
3.67
2795
2860
6.874134
TGTTTTGTAATGTAGCCTCTTCTCTC
59.126
38.462
0.00
0.00
0.00
3.20
2797
2862
3.632604
TGTAATGTAGCCTCTTCTCTCGG
59.367
47.826
0.00
0.00
0.00
4.63
2802
2867
1.216710
GCCTCTTCTCTCGGTGTGG
59.783
63.158
0.00
0.00
0.00
4.17
2818
2883
4.278170
CGGTGTGGTATAAATCATGGCAAT
59.722
41.667
0.00
0.00
0.00
3.56
2828
2893
9.964303
GTATAAATCATGGCAATTGAATACACA
57.036
29.630
10.34
0.00
0.00
3.72
2892
2957
8.411318
ACAATTCAACAAAGCTTGAAGTTTAG
57.589
30.769
0.00
0.00
42.13
1.85
2978
3043
6.451393
TGCATGGTGGTTTTATTCTGTTTAC
58.549
36.000
0.00
0.00
0.00
2.01
3037
3102
5.627367
TGTGCGCACAAAAATAATAGTTCAC
59.373
36.000
39.13
7.92
38.56
3.18
3057
3122
9.388506
AGTTCACTTCCTTAAGTATGAATCATG
57.611
33.333
5.91
0.00
44.28
3.07
3058
3123
8.616076
GTTCACTTCCTTAAGTATGAATCATGG
58.384
37.037
5.91
0.00
44.28
3.66
3079
3144
6.620877
TGGTTGTTTACTCTCAGATATGGT
57.379
37.500
0.00
0.00
0.00
3.55
3084
3149
6.330278
TGTTTACTCTCAGATATGGTGTTCG
58.670
40.000
0.00
0.00
0.00
3.95
3114
3179
8.585471
ATGATATTATAGGGATGCAAGTTTGG
57.415
34.615
0.00
0.00
0.00
3.28
3115
3180
7.526041
TGATATTATAGGGATGCAAGTTTGGT
58.474
34.615
0.00
0.00
0.00
3.67
3116
3181
8.004215
TGATATTATAGGGATGCAAGTTTGGTT
58.996
33.333
0.00
0.00
0.00
3.67
3117
3182
5.913137
TTATAGGGATGCAAGTTTGGTTG
57.087
39.130
0.00
0.00
0.00
3.77
3118
3183
1.341080
AGGGATGCAAGTTTGGTTGG
58.659
50.000
0.00
0.00
0.00
3.77
3119
3184
1.047801
GGGATGCAAGTTTGGTTGGT
58.952
50.000
0.00
0.00
0.00
3.67
3120
3185
1.416030
GGGATGCAAGTTTGGTTGGTT
59.584
47.619
0.00
0.00
0.00
3.67
3121
3186
2.482864
GGATGCAAGTTTGGTTGGTTG
58.517
47.619
0.00
0.00
0.00
3.77
3122
3187
2.102252
GGATGCAAGTTTGGTTGGTTGA
59.898
45.455
0.00
0.00
0.00
3.18
3123
3188
2.957491
TGCAAGTTTGGTTGGTTGAG
57.043
45.000
0.00
0.00
0.00
3.02
3124
3189
2.451490
TGCAAGTTTGGTTGGTTGAGA
58.549
42.857
0.00
0.00
0.00
3.27
3125
3190
2.426738
TGCAAGTTTGGTTGGTTGAGAG
59.573
45.455
0.00
0.00
0.00
3.20
3126
3191
2.223805
GCAAGTTTGGTTGGTTGAGAGG
60.224
50.000
0.00
0.00
0.00
3.69
3127
3192
3.287222
CAAGTTTGGTTGGTTGAGAGGA
58.713
45.455
0.00
0.00
0.00
3.71
3128
3193
3.214696
AGTTTGGTTGGTTGAGAGGAG
57.785
47.619
0.00
0.00
0.00
3.69
3129
3194
2.509964
AGTTTGGTTGGTTGAGAGGAGT
59.490
45.455
0.00
0.00
0.00
3.85
3130
3195
3.714798
AGTTTGGTTGGTTGAGAGGAGTA
59.285
43.478
0.00
0.00
0.00
2.59
3131
3196
4.165372
AGTTTGGTTGGTTGAGAGGAGTAA
59.835
41.667
0.00
0.00
0.00
2.24
3132
3197
4.993705
TTGGTTGGTTGAGAGGAGTAAT
57.006
40.909
0.00
0.00
0.00
1.89
3133
3198
4.553330
TGGTTGGTTGAGAGGAGTAATC
57.447
45.455
0.00
0.00
0.00
1.75
3134
3199
3.907474
TGGTTGGTTGAGAGGAGTAATCA
59.093
43.478
0.00
0.00
0.00
2.57
3135
3200
4.020218
TGGTTGGTTGAGAGGAGTAATCAG
60.020
45.833
0.00
0.00
0.00
2.90
3136
3201
3.895232
TGGTTGAGAGGAGTAATCAGC
57.105
47.619
0.00
0.00
0.00
4.26
3137
3202
3.173151
TGGTTGAGAGGAGTAATCAGCA
58.827
45.455
0.00
0.00
0.00
4.41
3138
3203
3.776969
TGGTTGAGAGGAGTAATCAGCAT
59.223
43.478
0.00
0.00
0.00
3.79
3139
3204
4.125703
GGTTGAGAGGAGTAATCAGCATG
58.874
47.826
0.00
0.00
37.54
4.06
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
8
9
8.818057
GCGAATAAGTGTACATCTATCTTTTGT
58.182
33.333
0.00
0.00
0.00
2.83
9
10
7.998767
CGCGAATAAGTGTACATCTATCTTTTG
59.001
37.037
0.00
0.00
0.00
2.44
10
11
7.169308
CCGCGAATAAGTGTACATCTATCTTTT
59.831
37.037
8.23
0.00
0.00
2.27
11
12
6.641314
CCGCGAATAAGTGTACATCTATCTTT
59.359
38.462
8.23
0.00
0.00
2.52
12
13
6.016527
TCCGCGAATAAGTGTACATCTATCTT
60.017
38.462
8.23
0.00
0.00
2.40
13
14
5.472478
TCCGCGAATAAGTGTACATCTATCT
59.528
40.000
8.23
0.00
0.00
1.98
14
15
5.568296
GTCCGCGAATAAGTGTACATCTATC
59.432
44.000
8.23
0.00
0.00
2.08
15
16
5.458891
GTCCGCGAATAAGTGTACATCTAT
58.541
41.667
8.23
0.00
0.00
1.98
16
17
4.553351
CGTCCGCGAATAAGTGTACATCTA
60.553
45.833
8.23
0.00
41.33
1.98
17
18
3.703420
GTCCGCGAATAAGTGTACATCT
58.297
45.455
8.23
0.00
0.00
2.90
18
19
2.466571
CGTCCGCGAATAAGTGTACATC
59.533
50.000
8.23
0.00
41.33
3.06
19
20
2.456989
CGTCCGCGAATAAGTGTACAT
58.543
47.619
8.23
0.00
41.33
2.29
20
21
1.467883
CCGTCCGCGAATAAGTGTACA
60.468
52.381
8.23
0.00
41.33
2.90
21
22
1.194495
CCGTCCGCGAATAAGTGTAC
58.806
55.000
8.23
0.00
41.33
2.90
22
23
1.064505
CTCCGTCCGCGAATAAGTGTA
59.935
52.381
8.23
0.00
41.33
2.90
23
24
0.179145
CTCCGTCCGCGAATAAGTGT
60.179
55.000
8.23
0.00
41.33
3.55
24
25
0.870307
CCTCCGTCCGCGAATAAGTG
60.870
60.000
8.23
0.00
41.33
3.16
25
26
1.436336
CCTCCGTCCGCGAATAAGT
59.564
57.895
8.23
0.00
41.33
2.24
26
27
1.299926
CCCTCCGTCCGCGAATAAG
60.300
63.158
8.23
0.00
41.33
1.73
27
28
1.731433
CTCCCTCCGTCCGCGAATAA
61.731
60.000
8.23
0.00
41.33
1.40
28
29
2.124193
TCCCTCCGTCCGCGAATA
60.124
61.111
8.23
0.00
41.33
1.75
29
30
2.898920
TACTCCCTCCGTCCGCGAAT
62.899
60.000
8.23
0.00
41.33
3.34
30
31
2.898920
ATACTCCCTCCGTCCGCGAA
62.899
60.000
8.23
0.00
41.33
4.70
31
32
2.043604
TATACTCCCTCCGTCCGCGA
62.044
60.000
8.23
0.00
41.33
5.87
32
33
1.168407
TTATACTCCCTCCGTCCGCG
61.168
60.000
0.00
0.00
37.95
6.46
33
34
1.035139
TTTATACTCCCTCCGTCCGC
58.965
55.000
0.00
0.00
0.00
5.54
34
35
3.806625
TTTTTATACTCCCTCCGTCCG
57.193
47.619
0.00
0.00
0.00
4.79
60
61
1.876497
CTTTTCACCGGTGGCATGGG
61.876
60.000
33.40
15.22
0.00
4.00
90
91
7.011994
TCGATACCTGACCAAACCCTATATAA
58.988
38.462
0.00
0.00
0.00
0.98
115
116
4.734398
TTTGAAATTTATGCCAGGCGAT
57.266
36.364
7.03
4.29
0.00
4.58
176
177
1.303561
GATGAAGGTGTGCTGGCCA
60.304
57.895
4.71
4.71
0.00
5.36
180
181
0.617413
AGGAGGATGAAGGTGTGCTG
59.383
55.000
0.00
0.00
0.00
4.41
181
182
1.004044
CAAGGAGGATGAAGGTGTGCT
59.996
52.381
0.00
0.00
0.00
4.40
186
187
0.539051
CGCTCAAGGAGGATGAAGGT
59.461
55.000
0.00
0.00
0.00
3.50
206
207
1.141053
GCTAGGTGTAGGGGGTGATTG
59.859
57.143
0.00
0.00
0.00
2.67
207
208
1.009675
AGCTAGGTGTAGGGGGTGATT
59.990
52.381
0.00
0.00
0.00
2.57
212
213
1.880941
AAGAAGCTAGGTGTAGGGGG
58.119
55.000
0.00
0.00
0.00
5.40
251
253
0.734942
TCGTCGTCGGAAAAGATGCC
60.735
55.000
1.55
0.00
37.69
4.40
252
254
0.365859
GTCGTCGTCGGAAAAGATGC
59.634
55.000
1.55
0.00
37.69
3.91
253
255
1.693467
TGTCGTCGTCGGAAAAGATG
58.307
50.000
1.55
0.00
37.69
2.90
254
256
2.056577
GTTGTCGTCGTCGGAAAAGAT
58.943
47.619
1.55
0.00
37.69
2.40
352
355
3.127895
GTCGCTATGATTCGGATAGAGCT
59.872
47.826
0.00
0.00
0.00
4.09
393
396
7.476540
TTCACTAAGTGATTGCTTAGACCTA
57.523
36.000
16.70
0.75
46.55
3.08
416
419
5.067283
ACGAACTGGTGCAAGTAATCTTTTT
59.933
36.000
0.00
0.00
0.00
1.94
430
439
3.875134
ACTTAGACCAAAACGAACTGGTG
59.125
43.478
10.94
1.46
46.12
4.17
432
441
5.494632
AAACTTAGACCAAAACGAACTGG
57.505
39.130
0.00
0.00
38.77
4.00
433
442
7.473027
TCTAAACTTAGACCAAAACGAACTG
57.527
36.000
0.00
0.00
34.99
3.16
434
443
7.767659
AGTTCTAAACTTAGACCAAAACGAACT
59.232
33.333
0.00
0.00
39.04
3.01
435
444
7.913423
AGTTCTAAACTTAGACCAAAACGAAC
58.087
34.615
0.00
0.00
39.04
3.95
446
455
8.800332
ACCGTTGAAGATAGTTCTAAACTTAGA
58.200
33.333
0.00
0.00
42.81
2.10
488
497
1.423794
GGGTTGACAGGTTCAGGGGA
61.424
60.000
0.00
0.00
34.94
4.81
519
528
1.803922
TCGCAACGTCGCCTACATG
60.804
57.895
0.00
0.00
0.00
3.21
581
590
3.258123
TCAGATCAATTGTGTCGTCCTCA
59.742
43.478
5.13
0.00
0.00
3.86
583
592
3.961480
TCAGATCAATTGTGTCGTCCT
57.039
42.857
5.13
0.00
0.00
3.85
727
758
8.154649
ACACAAATTCGAATATATGTCCTTCC
57.845
34.615
11.83
0.00
0.00
3.46
854
885
2.457598
AGAGTGCGGAGGAGATTTACA
58.542
47.619
0.00
0.00
0.00
2.41
895
930
1.133792
AGATAAGTGGGGGATTTGCGG
60.134
52.381
0.00
0.00
0.00
5.69
904
939
5.855045
AGTATTTAAGCGAGATAAGTGGGG
58.145
41.667
0.00
0.00
0.00
4.96
966
1001
3.741476
CTTGACTTGGCGCTGGGC
61.741
66.667
7.64
8.35
42.51
5.36
975
1015
3.249091
CGAGTGAGATGGACTTGACTTG
58.751
50.000
0.00
0.00
0.00
3.16
1086
1126
2.925170
AACAGCAGCCTCCTCCGT
60.925
61.111
0.00
0.00
0.00
4.69
1317
1366
1.524002
CATGAGCACCCCGATGACT
59.476
57.895
0.00
0.00
0.00
3.41
1983
2032
1.072015
GAGAATCCCCAGATGCAGAGG
59.928
57.143
0.00
0.00
29.07
3.69
2121
2179
3.810687
AACTGCACCCCCTCCCTCA
62.811
63.158
0.00
0.00
0.00
3.86
2122
2180
2.936032
AACTGCACCCCCTCCCTC
60.936
66.667
0.00
0.00
0.00
4.30
2123
2181
3.260100
CAACTGCACCCCCTCCCT
61.260
66.667
0.00
0.00
0.00
4.20
2124
2182
2.366153
TTTCAACTGCACCCCCTCCC
62.366
60.000
0.00
0.00
0.00
4.30
2125
2183
1.152830
TTTCAACTGCACCCCCTCC
59.847
57.895
0.00
0.00
0.00
4.30
2126
2184
1.179174
GGTTTCAACTGCACCCCCTC
61.179
60.000
0.00
0.00
0.00
4.30
2127
2185
1.152546
GGTTTCAACTGCACCCCCT
60.153
57.895
0.00
0.00
0.00
4.79
2128
2186
2.561037
CGGTTTCAACTGCACCCCC
61.561
63.158
0.00
0.00
0.00
5.40
2129
2187
1.388837
AACGGTTTCAACTGCACCCC
61.389
55.000
0.00
0.00
38.89
4.95
2130
2188
0.458260
AAACGGTTTCAACTGCACCC
59.542
50.000
0.00
0.00
38.89
4.61
2160
2218
9.080915
GGATGCTAAAGCTCTAAAAATGAAAAG
57.919
33.333
3.26
0.00
42.66
2.27
2179
2237
1.148273
GCCCATGTTCCGGATGCTA
59.852
57.895
4.15
0.00
0.00
3.49
2379
2441
4.486125
AACCTTTCAAACAAGCAACCAT
57.514
36.364
0.00
0.00
0.00
3.55
2449
2511
5.413833
CCATCACATAAGGTAGCATTCCATC
59.586
44.000
0.00
0.00
0.00
3.51
2455
2517
6.247229
TGTTACCATCACATAAGGTAGCAT
57.753
37.500
0.00
0.00
41.95
3.79
2513
2578
4.730966
AGAAGATCACCGATTAGGCTCTA
58.269
43.478
0.00
0.00
46.52
2.43
2514
2579
3.571590
AGAAGATCACCGATTAGGCTCT
58.428
45.455
0.00
0.00
46.52
4.09
2533
2598
8.625651
CGAGGAATATTTCTCTCTTCTGTTAGA
58.374
37.037
19.48
0.00
0.00
2.10
2537
2602
5.452636
GCCGAGGAATATTTCTCTCTTCTGT
60.453
44.000
19.48
0.00
0.00
3.41
2563
2628
0.244721
GGCAACATTTGGAGCAGTCC
59.755
55.000
0.00
0.00
44.24
3.85
2578
2643
3.452474
GCATGTACACAAAACAAGGCAA
58.548
40.909
0.00
0.00
33.75
4.52
2597
2662
2.816672
TGCCAGATAAATTGTTGACGCA
59.183
40.909
0.00
0.00
0.00
5.24
2648
2713
2.150390
CGGTCACATTCCACAATGACA
58.850
47.619
5.66
0.00
41.97
3.58
2795
2860
3.210227
TGCCATGATTTATACCACACCG
58.790
45.455
0.00
0.00
0.00
4.94
2797
2862
6.804677
TCAATTGCCATGATTTATACCACAC
58.195
36.000
0.00
0.00
0.00
3.82
2802
2867
9.964303
TGTGTATTCAATTGCCATGATTTATAC
57.036
29.630
0.00
0.00
0.00
1.47
2876
2941
5.400485
GCATGTCACTAAACTTCAAGCTTTG
59.600
40.000
0.00
0.00
0.00
2.77
2892
2957
4.519540
ACCTTATGGTTTTGCATGTCAC
57.480
40.909
0.00
0.00
46.05
3.67
2937
3002
7.262772
CACCATGCATCAGTTTTCTATTGATT
58.737
34.615
0.00
0.00
29.48
2.57
3037
3102
8.511604
ACAACCATGATTCATACTTAAGGAAG
57.488
34.615
7.53
0.00
38.76
3.46
3057
3122
6.407202
ACACCATATCTGAGAGTAAACAACC
58.593
40.000
0.00
0.00
0.00
3.77
3058
3123
7.201444
CGAACACCATATCTGAGAGTAAACAAC
60.201
40.741
0.00
0.00
0.00
3.32
3105
3170
2.223805
CCTCTCAACCAACCAAACTTGC
60.224
50.000
0.00
0.00
0.00
4.01
3106
3171
3.287222
TCCTCTCAACCAACCAAACTTG
58.713
45.455
0.00
0.00
0.00
3.16
3107
3172
3.053619
ACTCCTCTCAACCAACCAAACTT
60.054
43.478
0.00
0.00
0.00
2.66
3108
3173
2.509964
ACTCCTCTCAACCAACCAAACT
59.490
45.455
0.00
0.00
0.00
2.66
3109
3174
2.932261
ACTCCTCTCAACCAACCAAAC
58.068
47.619
0.00
0.00
0.00
2.93
3110
3175
4.781775
TTACTCCTCTCAACCAACCAAA
57.218
40.909
0.00
0.00
0.00
3.28
3111
3176
4.349636
TGATTACTCCTCTCAACCAACCAA
59.650
41.667
0.00
0.00
0.00
3.67
3112
3177
3.907474
TGATTACTCCTCTCAACCAACCA
59.093
43.478
0.00
0.00
0.00
3.67
3113
3178
4.508662
CTGATTACTCCTCTCAACCAACC
58.491
47.826
0.00
0.00
0.00
3.77
3114
3179
3.935828
GCTGATTACTCCTCTCAACCAAC
59.064
47.826
0.00
0.00
0.00
3.77
3115
3180
3.582647
TGCTGATTACTCCTCTCAACCAA
59.417
43.478
0.00
0.00
0.00
3.67
3116
3181
3.173151
TGCTGATTACTCCTCTCAACCA
58.827
45.455
0.00
0.00
0.00
3.67
3117
3182
3.895232
TGCTGATTACTCCTCTCAACC
57.105
47.619
0.00
0.00
0.00
3.77
3118
3183
5.016051
TCATGCTGATTACTCCTCTCAAC
57.984
43.478
0.00
0.00
0.00
3.18
3119
3184
4.958581
TCTCATGCTGATTACTCCTCTCAA
59.041
41.667
0.00
0.00
0.00
3.02
3120
3185
4.540715
TCTCATGCTGATTACTCCTCTCA
58.459
43.478
0.00
0.00
0.00
3.27
3121
3186
5.528043
TTCTCATGCTGATTACTCCTCTC
57.472
43.478
0.00
0.00
0.00
3.20
3122
3187
5.601729
TCATTCTCATGCTGATTACTCCTCT
59.398
40.000
0.00
0.00
0.00
3.69
3123
3188
5.851720
TCATTCTCATGCTGATTACTCCTC
58.148
41.667
0.00
0.00
0.00
3.71
3124
3189
5.221682
CCTCATTCTCATGCTGATTACTCCT
60.222
44.000
0.00
0.00
0.00
3.69
3125
3190
4.996122
CCTCATTCTCATGCTGATTACTCC
59.004
45.833
0.00
0.00
0.00
3.85
3126
3191
5.609423
ACCTCATTCTCATGCTGATTACTC
58.391
41.667
0.00
0.00
0.00
2.59
3127
3192
5.627182
ACCTCATTCTCATGCTGATTACT
57.373
39.130
0.00
0.00
0.00
2.24
3128
3193
6.297694
GAACCTCATTCTCATGCTGATTAC
57.702
41.667
0.00
0.00
34.15
1.89
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.