Multiple sequence alignment - TraesCS3A01G267200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G267200 chr3A 100.000 3204 0 0 1 3204 492056369 492053166 0.000000e+00 5917.0
1 TraesCS3A01G267200 chr3A 94.444 90 5 0 1 90 711964045 711963956 4.310000e-29 139.0
2 TraesCS3A01G267200 chr3D 90.981 2528 119 37 396 2880 371151433 371148972 0.000000e+00 3304.0
3 TraesCS3A01G267200 chr3D 88.179 313 31 5 2620 2931 371148712 371148405 5.050000e-98 368.0
4 TraesCS3A01G267200 chr3D 92.975 242 17 0 2963 3204 371148347 371148106 1.410000e-93 353.0
5 TraesCS3A01G267200 chr3D 87.405 262 29 4 2620 2880 371148971 371148713 6.720000e-77 298.0
6 TraesCS3A01G267200 chr3B 93.145 2159 112 12 544 2689 482349051 482346916 0.000000e+00 3134.0
7 TraesCS3A01G267200 chr3B 95.062 486 19 1 2724 3204 482346918 482346433 0.000000e+00 760.0
8 TraesCS3A01G267200 chr4A 89.399 283 16 5 103 385 96440623 96440891 8.510000e-91 344.0
9 TraesCS3A01G267200 chr4A 93.137 102 7 0 1 102 494052799 494052900 1.990000e-32 150.0
10 TraesCS3A01G267200 chr4A 88.000 100 12 0 3 102 225975885 225975984 5.610000e-23 119.0
11 TraesCS3A01G267200 chr4A 100.000 42 0 0 351 392 734232911 734232870 9.530000e-11 78.7
12 TraesCS3A01G267200 chr7D 73.399 1124 213 51 836 1944 81772880 81771828 1.100000e-89 340.0
13 TraesCS3A01G267200 chr7D 95.238 42 2 0 348 389 571873362 571873403 2.060000e-07 67.6
14 TraesCS3A01G267200 chr7A 73.023 860 160 39 836 1678 83733750 83732946 1.490000e-58 237.0
15 TraesCS3A01G267200 chr7A 95.455 88 4 0 1 88 731342610 731342523 1.200000e-29 141.0
16 TraesCS3A01G267200 chr7A 94.118 68 4 0 35 102 105758168 105758101 1.570000e-18 104.0
17 TraesCS3A01G267200 chr7A 97.561 41 1 0 348 388 393370849 393370889 1.590000e-08 71.3
18 TraesCS3A01G267200 chr7A 95.556 45 1 1 344 388 677732466 677732509 1.590000e-08 71.3
19 TraesCS3A01G267200 chr1A 95.098 102 5 0 1 102 48962600 48962701 9.200000e-36 161.0
20 TraesCS3A01G267200 chr1A 93.333 90 5 1 1 90 100367361 100367273 7.210000e-27 132.0
21 TraesCS3A01G267200 chr2B 92.473 93 6 1 11 102 534217593 534217501 7.210000e-27 132.0
22 TraesCS3A01G267200 chr2B 94.000 50 2 1 348 397 481913790 481913838 1.230000e-09 75.0
23 TraesCS3A01G267200 chr7B 80.734 109 19 2 1187 1294 28763995 28763888 2.050000e-12 84.2
24 TraesCS3A01G267200 chr1D 95.652 46 2 0 351 396 413771424 413771379 1.230000e-09 75.0
25 TraesCS3A01G267200 chr2A 97.619 42 1 0 348 389 755399066 755399107 4.430000e-09 73.1
26 TraesCS3A01G267200 chr2D 93.333 45 2 1 351 394 36221450 36221494 7.420000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G267200 chr3A 492053166 492056369 3203 True 5917.00 5917 100.0000 1 3204 1 chr3A.!!$R1 3203
1 TraesCS3A01G267200 chr3D 371148106 371151433 3327 True 1080.75 3304 89.8850 396 3204 4 chr3D.!!$R1 2808
2 TraesCS3A01G267200 chr3B 482346433 482349051 2618 True 1947.00 3134 94.1035 544 3204 2 chr3B.!!$R1 2660
3 TraesCS3A01G267200 chr7D 81771828 81772880 1052 True 340.00 340 73.3990 836 1944 1 chr7D.!!$R1 1108
4 TraesCS3A01G267200 chr7A 83732946 83733750 804 True 237.00 237 73.0230 836 1678 1 chr7A.!!$R1 842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.165944 GCGTTGTTCACCCGAATCAG 59.834 55.0 0.0 0.0 32.61 2.90 F
245 246 0.165944 CGTTGTTCACCCGAATCAGC 59.834 55.0 0.0 0.0 32.61 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2178 0.615331 TCCTGATCTGGGTGAGCAAC 59.385 55.000 17.73 0.0 40.87 4.17 R
2354 2394 5.743026 TGTAATCAAGTCACTCGCAAAAA 57.257 34.783 0.00 0.0 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.408050 ACGTTGACTCATCTTCAGTGC 58.592 47.619 0.00 0.00 0.00 4.40
21 22 2.224042 ACGTTGACTCATCTTCAGTGCA 60.224 45.455 0.00 0.00 0.00 4.57
22 23 2.802247 CGTTGACTCATCTTCAGTGCAA 59.198 45.455 0.00 0.00 0.00 4.08
23 24 3.363378 CGTTGACTCATCTTCAGTGCAAC 60.363 47.826 0.00 0.00 33.35 4.17
24 25 2.407090 TGACTCATCTTCAGTGCAACG 58.593 47.619 0.00 0.00 45.86 4.10
25 26 2.224042 TGACTCATCTTCAGTGCAACGT 60.224 45.455 0.00 0.00 45.86 3.99
26 27 3.005367 TGACTCATCTTCAGTGCAACGTA 59.995 43.478 0.00 0.00 45.86 3.57
27 28 3.579709 ACTCATCTTCAGTGCAACGTAG 58.420 45.455 0.00 0.00 45.86 3.51
28 29 2.926200 CTCATCTTCAGTGCAACGTAGG 59.074 50.000 0.00 0.00 45.86 3.18
29 30 2.002586 CATCTTCAGTGCAACGTAGGG 58.997 52.381 0.00 0.00 45.86 3.53
30 31 1.334160 TCTTCAGTGCAACGTAGGGA 58.666 50.000 0.00 0.00 45.86 4.20
31 32 1.272490 TCTTCAGTGCAACGTAGGGAG 59.728 52.381 0.00 0.00 45.86 4.30
32 33 0.320374 TTCAGTGCAACGTAGGGAGG 59.680 55.000 0.00 0.00 45.86 4.30
33 34 0.830444 TCAGTGCAACGTAGGGAGGT 60.830 55.000 0.00 0.00 45.86 3.85
34 35 0.892755 CAGTGCAACGTAGGGAGGTA 59.107 55.000 0.00 0.00 45.86 3.08
35 36 1.274167 CAGTGCAACGTAGGGAGGTAA 59.726 52.381 0.00 0.00 45.86 2.85
36 37 1.972795 AGTGCAACGTAGGGAGGTAAA 59.027 47.619 0.00 0.00 45.86 2.01
37 38 2.369532 AGTGCAACGTAGGGAGGTAAAA 59.630 45.455 0.00 0.00 45.86 1.52
38 39 3.140623 GTGCAACGTAGGGAGGTAAAAA 58.859 45.455 0.00 0.00 0.00 1.94
58 59 6.639632 AAAAATACATGCTTGCGATAGGAT 57.360 33.333 0.00 0.00 35.16 3.24
59 60 6.639632 AAAATACATGCTTGCGATAGGATT 57.360 33.333 0.00 0.00 35.16 3.01
60 61 6.639632 AAATACATGCTTGCGATAGGATTT 57.360 33.333 0.00 0.00 35.16 2.17
61 62 3.976793 ACATGCTTGCGATAGGATTTG 57.023 42.857 0.00 0.00 35.16 2.32
62 63 3.544684 ACATGCTTGCGATAGGATTTGA 58.455 40.909 0.00 0.00 35.16 2.69
63 64 3.947196 ACATGCTTGCGATAGGATTTGAA 59.053 39.130 0.00 0.00 35.16 2.69
64 65 4.201950 ACATGCTTGCGATAGGATTTGAAC 60.202 41.667 0.00 0.00 35.16 3.18
65 66 3.609853 TGCTTGCGATAGGATTTGAACT 58.390 40.909 0.00 0.00 35.16 3.01
66 67 3.623060 TGCTTGCGATAGGATTTGAACTC 59.377 43.478 0.00 0.00 35.16 3.01
67 68 3.302740 GCTTGCGATAGGATTTGAACTCG 60.303 47.826 0.00 0.00 35.16 4.18
68 69 2.932167 GCGATAGGATTTGAACTCGC 57.068 50.000 0.00 0.00 43.61 5.03
71 72 4.183539 CGATAGGATTTGAACTCGCAAC 57.816 45.455 0.00 0.00 0.00 4.17
72 73 3.001330 CGATAGGATTTGAACTCGCAACC 59.999 47.826 0.00 0.00 0.00 3.77
73 74 2.568623 AGGATTTGAACTCGCAACCT 57.431 45.000 0.00 0.00 0.00 3.50
74 75 2.863809 AGGATTTGAACTCGCAACCTT 58.136 42.857 0.00 0.00 0.00 3.50
75 76 2.814336 AGGATTTGAACTCGCAACCTTC 59.186 45.455 0.00 0.00 0.00 3.46
76 77 2.095212 GGATTTGAACTCGCAACCTTCC 60.095 50.000 0.00 0.00 0.00 3.46
77 78 2.045561 TTTGAACTCGCAACCTTCCA 57.954 45.000 0.00 0.00 0.00 3.53
78 79 1.305201 TTGAACTCGCAACCTTCCAC 58.695 50.000 0.00 0.00 0.00 4.02
79 80 0.878523 TGAACTCGCAACCTTCCACG 60.879 55.000 0.00 0.00 0.00 4.94
80 81 2.171489 GAACTCGCAACCTTCCACGC 62.171 60.000 0.00 0.00 0.00 5.34
81 82 2.664851 CTCGCAACCTTCCACGCA 60.665 61.111 0.00 0.00 0.00 5.24
82 83 2.203084 TCGCAACCTTCCACGCAA 60.203 55.556 0.00 0.00 0.00 4.85
83 84 1.577328 CTCGCAACCTTCCACGCAAT 61.577 55.000 0.00 0.00 0.00 3.56
84 85 0.320858 TCGCAACCTTCCACGCAATA 60.321 50.000 0.00 0.00 0.00 1.90
85 86 0.179200 CGCAACCTTCCACGCAATAC 60.179 55.000 0.00 0.00 0.00 1.89
86 87 0.170339 GCAACCTTCCACGCAATACC 59.830 55.000 0.00 0.00 0.00 2.73
87 88 1.821216 CAACCTTCCACGCAATACCT 58.179 50.000 0.00 0.00 0.00 3.08
88 89 1.737793 CAACCTTCCACGCAATACCTC 59.262 52.381 0.00 0.00 0.00 3.85
89 90 1.276622 ACCTTCCACGCAATACCTCT 58.723 50.000 0.00 0.00 0.00 3.69
90 91 2.463752 ACCTTCCACGCAATACCTCTA 58.536 47.619 0.00 0.00 0.00 2.43
91 92 2.431057 ACCTTCCACGCAATACCTCTAG 59.569 50.000 0.00 0.00 0.00 2.43
92 93 2.474816 CTTCCACGCAATACCTCTAGC 58.525 52.381 0.00 0.00 0.00 3.42
93 94 1.480789 TCCACGCAATACCTCTAGCA 58.519 50.000 0.00 0.00 0.00 3.49
94 95 1.136305 TCCACGCAATACCTCTAGCAC 59.864 52.381 0.00 0.00 0.00 4.40
95 96 1.571919 CACGCAATACCTCTAGCACC 58.428 55.000 0.00 0.00 0.00 5.01
96 97 1.134818 CACGCAATACCTCTAGCACCA 60.135 52.381 0.00 0.00 0.00 4.17
97 98 1.762957 ACGCAATACCTCTAGCACCAT 59.237 47.619 0.00 0.00 0.00 3.55
98 99 2.224066 ACGCAATACCTCTAGCACCATC 60.224 50.000 0.00 0.00 0.00 3.51
99 100 2.772287 GCAATACCTCTAGCACCATCC 58.228 52.381 0.00 0.00 0.00 3.51
100 101 2.104792 GCAATACCTCTAGCACCATCCA 59.895 50.000 0.00 0.00 0.00 3.41
101 102 3.433598 GCAATACCTCTAGCACCATCCAA 60.434 47.826 0.00 0.00 0.00 3.53
102 103 4.780815 CAATACCTCTAGCACCATCCAAA 58.219 43.478 0.00 0.00 0.00 3.28
103 104 4.696479 ATACCTCTAGCACCATCCAAAG 57.304 45.455 0.00 0.00 0.00 2.77
104 105 2.269940 ACCTCTAGCACCATCCAAAGT 58.730 47.619 0.00 0.00 0.00 2.66
105 106 2.644798 ACCTCTAGCACCATCCAAAGTT 59.355 45.455 0.00 0.00 0.00 2.66
106 107 3.274288 CCTCTAGCACCATCCAAAGTTC 58.726 50.000 0.00 0.00 0.00 3.01
107 108 3.054802 CCTCTAGCACCATCCAAAGTTCT 60.055 47.826 0.00 0.00 0.00 3.01
108 109 3.937706 CTCTAGCACCATCCAAAGTTCTG 59.062 47.826 0.00 0.00 0.00 3.02
109 110 1.251251 AGCACCATCCAAAGTTCTGC 58.749 50.000 0.00 0.00 0.00 4.26
110 111 0.244721 GCACCATCCAAAGTTCTGCC 59.755 55.000 0.00 0.00 0.00 4.85
111 112 1.915141 CACCATCCAAAGTTCTGCCT 58.085 50.000 0.00 0.00 0.00 4.75
112 113 2.879756 GCACCATCCAAAGTTCTGCCTA 60.880 50.000 0.00 0.00 0.00 3.93
113 114 3.624777 CACCATCCAAAGTTCTGCCTAT 58.375 45.455 0.00 0.00 0.00 2.57
114 115 4.019174 CACCATCCAAAGTTCTGCCTATT 58.981 43.478 0.00 0.00 0.00 1.73
115 116 5.192927 CACCATCCAAAGTTCTGCCTATTA 58.807 41.667 0.00 0.00 0.00 0.98
116 117 5.066505 CACCATCCAAAGTTCTGCCTATTAC 59.933 44.000 0.00 0.00 0.00 1.89
117 118 5.044846 ACCATCCAAAGTTCTGCCTATTACT 60.045 40.000 0.00 0.00 0.00 2.24
118 119 5.529060 CCATCCAAAGTTCTGCCTATTACTC 59.471 44.000 0.00 0.00 0.00 2.59
119 120 5.755409 TCCAAAGTTCTGCCTATTACTCA 57.245 39.130 0.00 0.00 0.00 3.41
120 121 6.121776 TCCAAAGTTCTGCCTATTACTCAA 57.878 37.500 0.00 0.00 0.00 3.02
121 122 5.938125 TCCAAAGTTCTGCCTATTACTCAAC 59.062 40.000 0.00 0.00 0.00 3.18
122 123 5.705441 CCAAAGTTCTGCCTATTACTCAACA 59.295 40.000 0.00 0.00 0.00 3.33
123 124 6.348540 CCAAAGTTCTGCCTATTACTCAACAC 60.349 42.308 0.00 0.00 0.00 3.32
124 125 5.483685 AGTTCTGCCTATTACTCAACACA 57.516 39.130 0.00 0.00 0.00 3.72
125 126 5.482908 AGTTCTGCCTATTACTCAACACAG 58.517 41.667 0.00 0.00 0.00 3.66
126 127 3.861840 TCTGCCTATTACTCAACACAGC 58.138 45.455 0.00 0.00 0.00 4.40
127 128 3.515502 TCTGCCTATTACTCAACACAGCT 59.484 43.478 0.00 0.00 0.00 4.24
128 129 4.020218 TCTGCCTATTACTCAACACAGCTT 60.020 41.667 0.00 0.00 0.00 3.74
129 130 4.651778 TGCCTATTACTCAACACAGCTTT 58.348 39.130 0.00 0.00 0.00 3.51
130 131 4.455533 TGCCTATTACTCAACACAGCTTTG 59.544 41.667 0.00 0.00 0.00 2.77
131 132 4.695455 GCCTATTACTCAACACAGCTTTGA 59.305 41.667 6.92 2.86 0.00 2.69
137 138 4.843220 CTCAACACAGCTTTGAGGAATT 57.157 40.909 15.91 0.00 44.25 2.17
138 139 5.192327 CTCAACACAGCTTTGAGGAATTT 57.808 39.130 15.91 0.00 44.25 1.82
139 140 6.317789 CTCAACACAGCTTTGAGGAATTTA 57.682 37.500 15.91 0.00 44.25 1.40
140 141 6.707440 TCAACACAGCTTTGAGGAATTTAA 57.293 33.333 6.92 0.00 0.00 1.52
141 142 6.738114 TCAACACAGCTTTGAGGAATTTAAG 58.262 36.000 6.92 0.00 0.00 1.85
142 143 6.545666 TCAACACAGCTTTGAGGAATTTAAGA 59.454 34.615 6.92 0.00 0.00 2.10
143 144 6.959639 ACACAGCTTTGAGGAATTTAAGAA 57.040 33.333 6.92 0.00 0.00 2.52
144 145 7.530426 ACACAGCTTTGAGGAATTTAAGAAT 57.470 32.000 6.92 0.00 0.00 2.40
145 146 7.373493 ACACAGCTTTGAGGAATTTAAGAATG 58.627 34.615 6.92 0.00 0.00 2.67
146 147 7.014615 ACACAGCTTTGAGGAATTTAAGAATGT 59.985 33.333 6.92 0.00 0.00 2.71
147 148 7.540055 CACAGCTTTGAGGAATTTAAGAATGTC 59.460 37.037 0.00 0.00 0.00 3.06
148 149 7.231317 ACAGCTTTGAGGAATTTAAGAATGTCA 59.769 33.333 0.00 0.00 0.00 3.58
149 150 7.754027 CAGCTTTGAGGAATTTAAGAATGTCAG 59.246 37.037 0.00 0.00 0.00 3.51
150 151 7.667219 AGCTTTGAGGAATTTAAGAATGTCAGA 59.333 33.333 0.00 0.00 0.00 3.27
151 152 7.752686 GCTTTGAGGAATTTAAGAATGTCAGAC 59.247 37.037 0.00 0.00 0.00 3.51
152 153 8.690203 TTTGAGGAATTTAAGAATGTCAGACA 57.310 30.769 5.50 5.50 0.00 3.41
153 154 8.690203 TTGAGGAATTTAAGAATGTCAGACAA 57.310 30.769 7.50 0.00 0.00 3.18
154 155 8.327941 TGAGGAATTTAAGAATGTCAGACAAG 57.672 34.615 7.50 0.00 0.00 3.16
155 156 7.094634 TGAGGAATTTAAGAATGTCAGACAAGC 60.095 37.037 7.50 2.56 0.00 4.01
156 157 6.151817 AGGAATTTAAGAATGTCAGACAAGCC 59.848 38.462 7.50 0.00 0.00 4.35
157 158 5.551760 ATTTAAGAATGTCAGACAAGCCG 57.448 39.130 7.50 0.00 0.00 5.52
158 159 1.160137 AAGAATGTCAGACAAGCCGC 58.840 50.000 7.50 0.00 0.00 6.53
159 160 1.016130 AGAATGTCAGACAAGCCGCG 61.016 55.000 7.50 0.00 0.00 6.46
160 161 1.291877 GAATGTCAGACAAGCCGCGT 61.292 55.000 7.50 0.00 0.00 6.01
161 162 0.884704 AATGTCAGACAAGCCGCGTT 60.885 50.000 7.50 0.00 0.00 4.84
162 163 1.568612 ATGTCAGACAAGCCGCGTTG 61.569 55.000 7.50 6.64 0.00 4.10
163 164 2.664851 TCAGACAAGCCGCGTTGG 60.665 61.111 13.23 0.00 42.50 3.77
172 173 2.811317 CCGCGTTGGCACTCTCTC 60.811 66.667 4.92 0.00 39.92 3.20
173 174 2.049156 CGCGTTGGCACTCTCTCA 60.049 61.111 0.00 0.00 39.92 3.27
174 175 2.091112 CGCGTTGGCACTCTCTCAG 61.091 63.158 0.00 0.00 39.92 3.35
175 176 1.290324 GCGTTGGCACTCTCTCAGA 59.710 57.895 0.00 0.00 39.62 3.27
186 187 3.260475 CTCTCTCAGAGTCGAGGAAGA 57.740 52.381 0.36 7.33 37.57 2.87
187 188 2.936498 CTCTCTCAGAGTCGAGGAAGAC 59.064 54.545 0.36 0.00 37.57 3.01
188 189 2.303311 TCTCTCAGAGTCGAGGAAGACA 59.697 50.000 0.36 0.00 43.24 3.41
189 190 3.054728 TCTCTCAGAGTCGAGGAAGACAT 60.055 47.826 0.36 0.00 43.24 3.06
190 191 3.013219 TCTCAGAGTCGAGGAAGACATG 58.987 50.000 10.67 0.00 43.24 3.21
191 192 2.095461 TCAGAGTCGAGGAAGACATGG 58.905 52.381 0.00 0.00 43.24 3.66
192 193 0.820871 AGAGTCGAGGAAGACATGGC 59.179 55.000 0.00 0.00 43.24 4.40
193 194 0.179097 GAGTCGAGGAAGACATGGCC 60.179 60.000 0.00 0.00 43.24 5.36
194 195 1.153349 GTCGAGGAAGACATGGCCC 60.153 63.158 0.00 0.00 40.65 5.80
195 196 1.612146 TCGAGGAAGACATGGCCCA 60.612 57.895 0.00 0.00 0.00 5.36
196 197 0.982852 TCGAGGAAGACATGGCCCAT 60.983 55.000 0.00 0.00 0.00 4.00
197 198 0.758734 CGAGGAAGACATGGCCCATA 59.241 55.000 0.00 0.00 0.00 2.74
198 199 1.349026 CGAGGAAGACATGGCCCATAT 59.651 52.381 0.00 0.00 0.00 1.78
199 200 2.567169 CGAGGAAGACATGGCCCATATA 59.433 50.000 0.00 0.00 0.00 0.86
200 201 3.617531 CGAGGAAGACATGGCCCATATAC 60.618 52.174 0.00 0.00 0.00 1.47
201 202 3.326521 AGGAAGACATGGCCCATATACA 58.673 45.455 0.00 0.00 0.00 2.29
202 203 3.328931 AGGAAGACATGGCCCATATACAG 59.671 47.826 0.00 0.00 0.00 2.74
203 204 3.073062 GGAAGACATGGCCCATATACAGT 59.927 47.826 0.00 0.00 0.00 3.55
204 205 4.286032 GGAAGACATGGCCCATATACAGTA 59.714 45.833 0.00 0.00 0.00 2.74
205 206 5.045578 GGAAGACATGGCCCATATACAGTAT 60.046 44.000 0.00 0.00 0.00 2.12
206 207 6.156256 GGAAGACATGGCCCATATACAGTATA 59.844 42.308 0.00 2.62 0.00 1.47
207 208 6.546428 AGACATGGCCCATATACAGTATAC 57.454 41.667 0.00 0.00 0.00 1.47
208 209 6.022958 AGACATGGCCCATATACAGTATACA 58.977 40.000 0.00 0.00 0.00 2.29
209 210 6.049955 ACATGGCCCATATACAGTATACAC 57.950 41.667 0.00 0.00 0.00 2.90
210 211 5.546110 ACATGGCCCATATACAGTATACACA 59.454 40.000 0.00 0.00 0.00 3.72
211 212 6.043822 ACATGGCCCATATACAGTATACACAA 59.956 38.462 0.00 0.00 0.00 3.33
212 213 6.502074 TGGCCCATATACAGTATACACAAA 57.498 37.500 0.00 0.00 0.00 2.83
213 214 7.085476 TGGCCCATATACAGTATACACAAAT 57.915 36.000 0.00 0.00 0.00 2.32
214 215 8.208575 TGGCCCATATACAGTATACACAAATA 57.791 34.615 0.00 0.00 0.00 1.40
215 216 8.661345 TGGCCCATATACAGTATACACAAATAA 58.339 33.333 0.00 0.00 0.00 1.40
216 217 9.681062 GGCCCATATACAGTATACACAAATAAT 57.319 33.333 5.50 0.00 0.00 1.28
236 237 9.730420 AAATAATCATATTTAGCGTTGTTCACC 57.270 29.630 0.00 0.00 39.40 4.02
237 238 5.751243 ATCATATTTAGCGTTGTTCACCC 57.249 39.130 0.00 0.00 0.00 4.61
238 239 3.619483 TCATATTTAGCGTTGTTCACCCG 59.381 43.478 0.00 0.00 0.00 5.28
239 240 2.172851 ATTTAGCGTTGTTCACCCGA 57.827 45.000 0.00 0.00 0.00 5.14
240 241 1.950828 TTTAGCGTTGTTCACCCGAA 58.049 45.000 0.00 0.00 0.00 4.30
241 242 2.172851 TTAGCGTTGTTCACCCGAAT 57.827 45.000 0.00 0.00 32.61 3.34
242 243 1.717194 TAGCGTTGTTCACCCGAATC 58.283 50.000 0.00 0.00 32.61 2.52
243 244 0.250124 AGCGTTGTTCACCCGAATCA 60.250 50.000 0.00 0.00 32.61 2.57
244 245 0.165944 GCGTTGTTCACCCGAATCAG 59.834 55.000 0.00 0.00 32.61 2.90
245 246 0.165944 CGTTGTTCACCCGAATCAGC 59.834 55.000 0.00 0.00 32.61 4.26
246 247 1.523758 GTTGTTCACCCGAATCAGCT 58.476 50.000 0.00 0.00 32.61 4.24
247 248 1.197721 GTTGTTCACCCGAATCAGCTG 59.802 52.381 7.63 7.63 32.61 4.24
248 249 0.684535 TGTTCACCCGAATCAGCTGA 59.315 50.000 20.79 20.79 32.61 4.26
249 250 1.079503 GTTCACCCGAATCAGCTGAC 58.920 55.000 20.97 6.39 32.61 3.51
250 251 0.976641 TTCACCCGAATCAGCTGACT 59.023 50.000 20.97 8.44 0.00 3.41
251 252 1.847328 TCACCCGAATCAGCTGACTA 58.153 50.000 20.97 0.00 0.00 2.59
252 253 2.388735 TCACCCGAATCAGCTGACTAT 58.611 47.619 20.97 8.51 0.00 2.12
253 254 2.362397 TCACCCGAATCAGCTGACTATC 59.638 50.000 20.97 16.26 0.00 2.08
254 255 1.689273 ACCCGAATCAGCTGACTATCC 59.311 52.381 20.97 5.62 0.00 2.59
255 256 1.688735 CCCGAATCAGCTGACTATCCA 59.311 52.381 20.97 0.00 0.00 3.41
256 257 2.301296 CCCGAATCAGCTGACTATCCAT 59.699 50.000 20.97 0.00 0.00 3.41
257 258 3.324117 CCGAATCAGCTGACTATCCATG 58.676 50.000 20.97 5.63 0.00 3.66
258 259 3.244009 CCGAATCAGCTGACTATCCATGT 60.244 47.826 20.97 0.00 0.00 3.21
259 260 3.986572 CGAATCAGCTGACTATCCATGTC 59.013 47.826 20.97 4.61 35.21 3.06
260 261 4.314121 GAATCAGCTGACTATCCATGTCC 58.686 47.826 20.97 0.00 33.83 4.02
261 262 3.037851 TCAGCTGACTATCCATGTCCT 57.962 47.619 13.74 0.00 33.83 3.85
262 263 2.697229 TCAGCTGACTATCCATGTCCTG 59.303 50.000 13.74 0.00 33.83 3.86
263 264 2.697229 CAGCTGACTATCCATGTCCTGA 59.303 50.000 8.42 0.00 33.83 3.86
264 265 3.133542 CAGCTGACTATCCATGTCCTGAA 59.866 47.826 8.42 0.00 33.83 3.02
265 266 3.133721 AGCTGACTATCCATGTCCTGAAC 59.866 47.826 0.00 0.00 33.83 3.18
266 267 3.133721 GCTGACTATCCATGTCCTGAACT 59.866 47.826 0.00 0.00 33.83 3.01
267 268 4.342378 GCTGACTATCCATGTCCTGAACTA 59.658 45.833 0.00 0.00 33.83 2.24
268 269 5.011533 GCTGACTATCCATGTCCTGAACTAT 59.988 44.000 0.00 0.00 33.83 2.12
269 270 6.410942 TGACTATCCATGTCCTGAACTATG 57.589 41.667 0.00 0.00 33.83 2.23
270 271 5.220710 ACTATCCATGTCCTGAACTATGC 57.779 43.478 0.00 0.00 0.00 3.14
271 272 2.602257 TCCATGTCCTGAACTATGCG 57.398 50.000 0.00 0.00 0.00 4.73
272 273 1.831106 TCCATGTCCTGAACTATGCGT 59.169 47.619 0.00 0.00 0.00 5.24
273 274 2.159099 TCCATGTCCTGAACTATGCGTC 60.159 50.000 0.00 0.00 0.00 5.19
274 275 2.418609 CCATGTCCTGAACTATGCGTCA 60.419 50.000 0.00 0.00 0.00 4.35
275 276 2.363788 TGTCCTGAACTATGCGTCAC 57.636 50.000 0.00 0.00 0.00 3.67
276 277 1.616374 TGTCCTGAACTATGCGTCACA 59.384 47.619 0.00 0.00 0.00 3.58
277 278 2.036604 TGTCCTGAACTATGCGTCACAA 59.963 45.455 0.00 0.00 0.00 3.33
278 279 2.412089 GTCCTGAACTATGCGTCACAAC 59.588 50.000 0.00 0.00 0.00 3.32
296 297 8.222984 GTCACAACGAACCCTATTTTTAATTG 57.777 34.615 0.00 0.00 0.00 2.32
297 298 8.077386 GTCACAACGAACCCTATTTTTAATTGA 58.923 33.333 0.00 0.00 0.00 2.57
298 299 8.630917 TCACAACGAACCCTATTTTTAATTGAA 58.369 29.630 0.00 0.00 0.00 2.69
299 300 9.418045 CACAACGAACCCTATTTTTAATTGAAT 57.582 29.630 0.00 0.00 0.00 2.57
300 301 9.634163 ACAACGAACCCTATTTTTAATTGAATC 57.366 29.630 0.00 0.00 0.00 2.52
301 302 9.632807 CAACGAACCCTATTTTTAATTGAATCA 57.367 29.630 0.00 0.00 0.00 2.57
324 325 9.618890 ATCATATTTTGTATGTACAAGTCTGCT 57.381 29.630 0.00 0.00 45.77 4.24
328 329 7.609760 TTTTGTATGTACAAGTCTGCTATGG 57.390 36.000 0.00 0.00 45.77 2.74
329 330 5.932619 TGTATGTACAAGTCTGCTATGGT 57.067 39.130 0.00 0.00 32.40 3.55
330 331 6.294361 TGTATGTACAAGTCTGCTATGGTT 57.706 37.500 0.00 0.00 32.40 3.67
331 332 7.412853 TGTATGTACAAGTCTGCTATGGTTA 57.587 36.000 0.00 0.00 32.40 2.85
332 333 8.018537 TGTATGTACAAGTCTGCTATGGTTAT 57.981 34.615 0.00 0.00 32.40 1.89
333 334 8.482943 TGTATGTACAAGTCTGCTATGGTTATT 58.517 33.333 0.00 0.00 32.40 1.40
334 335 9.976511 GTATGTACAAGTCTGCTATGGTTATTA 57.023 33.333 0.00 0.00 0.00 0.98
336 337 7.497595 TGTACAAGTCTGCTATGGTTATTAGG 58.502 38.462 0.00 0.00 0.00 2.69
337 338 5.930135 ACAAGTCTGCTATGGTTATTAGGG 58.070 41.667 0.00 0.00 0.00 3.53
338 339 5.428783 ACAAGTCTGCTATGGTTATTAGGGT 59.571 40.000 0.00 0.00 0.00 4.34
339 340 5.552870 AGTCTGCTATGGTTATTAGGGTG 57.447 43.478 0.00 0.00 0.00 4.61
340 341 4.065789 GTCTGCTATGGTTATTAGGGTGC 58.934 47.826 0.00 0.00 0.00 5.01
341 342 3.973973 TCTGCTATGGTTATTAGGGTGCT 59.026 43.478 0.00 0.00 0.00 4.40
342 343 5.011738 GTCTGCTATGGTTATTAGGGTGCTA 59.988 44.000 0.00 0.00 0.00 3.49
343 344 5.246203 TCTGCTATGGTTATTAGGGTGCTAG 59.754 44.000 0.00 0.00 0.00 3.42
344 345 5.152193 TGCTATGGTTATTAGGGTGCTAGA 58.848 41.667 0.00 0.00 0.00 2.43
345 346 5.785423 TGCTATGGTTATTAGGGTGCTAGAT 59.215 40.000 0.00 0.00 0.00 1.98
346 347 6.070767 TGCTATGGTTATTAGGGTGCTAGATC 60.071 42.308 0.00 0.00 0.00 2.75
347 348 6.155393 GCTATGGTTATTAGGGTGCTAGATCT 59.845 42.308 0.00 0.00 0.00 2.75
348 349 7.310734 GCTATGGTTATTAGGGTGCTAGATCTT 60.311 40.741 0.00 0.00 0.00 2.40
349 350 6.420913 TGGTTATTAGGGTGCTAGATCTTC 57.579 41.667 0.00 0.00 0.00 2.87
350 351 6.143915 TGGTTATTAGGGTGCTAGATCTTCT 58.856 40.000 0.00 0.00 0.00 2.85
351 352 6.615726 TGGTTATTAGGGTGCTAGATCTTCTT 59.384 38.462 0.00 0.00 0.00 2.52
352 353 7.127339 TGGTTATTAGGGTGCTAGATCTTCTTT 59.873 37.037 0.00 0.00 0.00 2.52
353 354 7.993758 GGTTATTAGGGTGCTAGATCTTCTTTT 59.006 37.037 0.00 0.00 0.00 2.27
354 355 9.047371 GTTATTAGGGTGCTAGATCTTCTTTTC 57.953 37.037 0.00 0.00 0.00 2.29
355 356 6.875972 TTAGGGTGCTAGATCTTCTTTTCT 57.124 37.500 0.00 0.00 0.00 2.52
356 357 5.351948 AGGGTGCTAGATCTTCTTTTCTC 57.648 43.478 0.00 0.00 0.00 2.87
357 358 4.163268 AGGGTGCTAGATCTTCTTTTCTCC 59.837 45.833 0.00 0.00 0.00 3.71
358 359 4.447290 GGTGCTAGATCTTCTTTTCTCCC 58.553 47.826 0.00 0.00 0.00 4.30
359 360 4.116238 GTGCTAGATCTTCTTTTCTCCCG 58.884 47.826 0.00 0.00 0.00 5.14
360 361 3.769844 TGCTAGATCTTCTTTTCTCCCGT 59.230 43.478 0.00 0.00 0.00 5.28
361 362 4.223032 TGCTAGATCTTCTTTTCTCCCGTT 59.777 41.667 0.00 0.00 0.00 4.44
362 363 4.568760 GCTAGATCTTCTTTTCTCCCGTTG 59.431 45.833 0.00 0.00 0.00 4.10
363 364 3.339141 AGATCTTCTTTTCTCCCGTTGC 58.661 45.455 0.00 0.00 0.00 4.17
364 365 2.631160 TCTTCTTTTCTCCCGTTGCA 57.369 45.000 0.00 0.00 0.00 4.08
365 366 2.925724 TCTTCTTTTCTCCCGTTGCAA 58.074 42.857 0.00 0.00 0.00 4.08
366 367 2.616842 TCTTCTTTTCTCCCGTTGCAAC 59.383 45.455 19.89 19.89 0.00 4.17
376 377 3.649986 GTTGCAACGCACGAGCCT 61.650 61.111 14.90 0.00 38.71 4.58
377 378 2.899838 TTGCAACGCACGAGCCTT 60.900 55.556 0.00 0.00 38.71 4.35
378 379 2.477176 TTGCAACGCACGAGCCTTT 61.477 52.632 0.00 0.00 38.71 3.11
379 380 1.999071 TTGCAACGCACGAGCCTTTT 61.999 50.000 0.00 0.00 38.71 2.27
380 381 1.299089 GCAACGCACGAGCCTTTTT 60.299 52.632 0.00 0.00 37.52 1.94
381 382 1.539776 GCAACGCACGAGCCTTTTTG 61.540 55.000 0.00 0.00 37.52 2.44
382 383 1.299089 AACGCACGAGCCTTTTTGC 60.299 52.632 0.00 0.00 37.52 3.68
383 384 1.724582 AACGCACGAGCCTTTTTGCT 61.725 50.000 0.00 0.00 46.37 3.91
384 385 0.882927 ACGCACGAGCCTTTTTGCTA 60.883 50.000 0.00 0.00 42.95 3.49
385 386 0.179215 CGCACGAGCCTTTTTGCTAG 60.179 55.000 0.00 0.00 42.95 3.42
386 387 0.875059 GCACGAGCCTTTTTGCTAGT 59.125 50.000 0.00 0.00 46.25 2.57
387 388 2.073816 GCACGAGCCTTTTTGCTAGTA 58.926 47.619 0.00 0.00 43.98 1.82
388 389 2.482721 GCACGAGCCTTTTTGCTAGTAA 59.517 45.455 0.00 0.00 43.98 2.24
389 390 3.424962 GCACGAGCCTTTTTGCTAGTAAG 60.425 47.826 0.00 0.00 43.98 2.34
390 391 3.994392 CACGAGCCTTTTTGCTAGTAAGA 59.006 43.478 0.00 0.00 43.98 2.10
391 392 4.451096 CACGAGCCTTTTTGCTAGTAAGAA 59.549 41.667 0.00 0.00 43.98 2.52
392 393 5.122396 CACGAGCCTTTTTGCTAGTAAGAAT 59.878 40.000 0.00 0.00 43.98 2.40
393 394 6.312918 CACGAGCCTTTTTGCTAGTAAGAATA 59.687 38.462 0.00 0.00 43.98 1.75
394 395 6.877322 ACGAGCCTTTTTGCTAGTAAGAATAA 59.123 34.615 0.00 0.00 43.98 1.40
404 405 8.438676 TTGCTAGTAAGAATAAAGATTGAGCC 57.561 34.615 0.00 0.00 0.00 4.70
417 418 3.253432 AGATTGAGCCGACCTTGTTTTTC 59.747 43.478 0.00 0.00 0.00 2.29
425 426 4.743151 GCCGACCTTGTTTTTCCTTTTAAG 59.257 41.667 0.00 0.00 0.00 1.85
585 586 8.204836 AGTAATCAATAAAGCGGAGTGTATTCT 58.795 33.333 0.00 0.00 0.00 2.40
701 709 4.608890 GCCAAAAATCACAACTGAAATGCG 60.609 41.667 0.00 0.00 0.00 4.73
706 714 2.710377 TCACAACTGAAATGCGCCTAT 58.290 42.857 4.18 0.00 0.00 2.57
731 739 4.023291 AGAGTGAGACCTGAGAGAAATCC 58.977 47.826 0.00 0.00 0.00 3.01
755 763 5.557893 CGATCTGATCCTTCAAAAGCGAATC 60.558 44.000 11.84 0.00 0.00 2.52
777 789 5.502079 TCCTCTTGAGAAGTAGTACTCCTG 58.498 45.833 2.58 0.00 32.84 3.86
825 837 0.179124 GAGAGCGCCAAGAAGACGAT 60.179 55.000 2.29 0.00 0.00 3.73
1144 1160 1.203137 TCTTCTTCGAAGACCTCCCCA 60.203 52.381 27.03 10.12 34.32 4.96
1332 1348 1.209128 GCTATTCGTCCCACATCGTG 58.791 55.000 0.00 0.00 0.00 4.35
1359 1375 2.586079 ATCTTGGCGGACGATGCG 60.586 61.111 0.00 0.00 0.00 4.73
1382 1398 2.707849 CCTCGTTCCGGGTCATCGT 61.708 63.158 0.00 0.00 0.00 3.73
1456 1478 1.375908 TGGGACATGCTTGAGTCGC 60.376 57.895 6.60 7.43 44.90 5.19
1482 1507 2.470821 ACGCCTGCGATGTATAACTTC 58.529 47.619 19.52 0.00 42.83 3.01
1487 1512 3.997021 CCTGCGATGTATAACTTCATCCC 59.003 47.826 0.00 0.00 37.67 3.85
1492 1517 4.996758 CGATGTATAACTTCATCCCATGCA 59.003 41.667 0.00 0.00 37.67 3.96
1536 1561 1.878070 CTACGTGTACTGGCGGTCA 59.122 57.895 0.06 0.00 0.00 4.02
1590 1615 2.738000 CGAGAAGATCTTGGTGCTGGAG 60.738 54.545 14.00 0.00 0.00 3.86
1897 1922 3.515602 GGAAGCCCCATTCATATCTGT 57.484 47.619 0.00 0.00 34.14 3.41
1899 1924 3.823304 GGAAGCCCCATTCATATCTGTTC 59.177 47.826 0.00 0.00 34.14 3.18
2019 2044 0.468648 TGCCTGCTCCAGATGATGAG 59.531 55.000 0.00 0.00 32.44 2.90
2020 2045 0.469070 GCCTGCTCCAGATGATGAGT 59.531 55.000 0.00 0.00 32.44 3.41
2022 2047 2.103771 GCCTGCTCCAGATGATGAGTAA 59.896 50.000 0.00 0.00 32.44 2.24
2023 2048 3.803021 GCCTGCTCCAGATGATGAGTAAG 60.803 52.174 0.00 0.00 32.44 2.34
2026 2051 5.396101 CCTGCTCCAGATGATGAGTAAGAAA 60.396 44.000 0.00 0.00 32.44 2.52
2027 2052 6.244552 TGCTCCAGATGATGAGTAAGAAAT 57.755 37.500 0.00 0.00 0.00 2.17
2028 2053 6.656902 TGCTCCAGATGATGAGTAAGAAATT 58.343 36.000 0.00 0.00 0.00 1.82
2029 2054 7.114754 TGCTCCAGATGATGAGTAAGAAATTT 58.885 34.615 0.00 0.00 0.00 1.82
2030 2055 7.281774 TGCTCCAGATGATGAGTAAGAAATTTC 59.718 37.037 10.33 10.33 0.00 2.17
2031 2056 7.281774 GCTCCAGATGATGAGTAAGAAATTTCA 59.718 37.037 19.99 0.00 0.00 2.69
2032 2057 9.170734 CTCCAGATGATGAGTAAGAAATTTCAA 57.829 33.333 19.99 5.14 0.00 2.69
2033 2058 9.170734 TCCAGATGATGAGTAAGAAATTTCAAG 57.829 33.333 19.99 0.00 0.00 3.02
2034 2059 8.404000 CCAGATGATGAGTAAGAAATTTCAAGG 58.596 37.037 19.99 0.00 0.00 3.61
2035 2060 7.914346 CAGATGATGAGTAAGAAATTTCAAGGC 59.086 37.037 19.99 7.32 0.00 4.35
2036 2061 6.182039 TGATGAGTAAGAAATTTCAAGGCG 57.818 37.500 19.99 0.00 0.00 5.52
2037 2062 4.419522 TGAGTAAGAAATTTCAAGGCGC 57.580 40.909 19.99 0.00 0.00 6.53
2038 2063 4.072131 TGAGTAAGAAATTTCAAGGCGCT 58.928 39.130 19.99 8.72 0.00 5.92
2080 2119 9.050601 GGTAATCTCCTCTTTGATCTGTTAATG 57.949 37.037 0.00 0.00 0.00 1.90
2139 2178 5.615925 AGCTATTTAAGGACAGGTGTAGG 57.384 43.478 0.00 0.00 0.00 3.18
2178 2218 5.180868 CAGGATTTGATGCCTATGAAGCTAC 59.819 44.000 0.00 0.00 32.03 3.58
2180 2220 5.180868 GGATTTGATGCCTATGAAGCTACTG 59.819 44.000 0.00 0.00 0.00 2.74
2190 2230 6.348050 GCCTATGAAGCTACTGCATGATAAAC 60.348 42.308 0.00 0.00 42.74 2.01
2261 2301 5.859495 TGGTATTGTCACAGTGTGTCATTA 58.141 37.500 21.19 18.36 32.53 1.90
2324 2364 6.434028 CCAATTTCCCTAGAACTCAACATCAA 59.566 38.462 0.00 0.00 0.00 2.57
2394 2434 8.196802 TGATTACATAAAAGACTGGATCAACG 57.803 34.615 0.00 0.00 0.00 4.10
2516 2557 6.418101 ACACTACATATTGCCAGAATCAACT 58.582 36.000 0.00 0.00 0.00 3.16
2607 2665 1.357137 TAGTTCACCTGGCACCATCA 58.643 50.000 0.00 0.00 0.00 3.07
2708 3033 2.890311 CTGGGTCATAGTTTGCACCAAA 59.110 45.455 0.00 0.00 32.66 3.28
2776 3360 4.202101 TGGTTGGCAAACTTAACTGTCATG 60.202 41.667 17.39 0.00 36.48 3.07
2779 3363 3.253188 TGGCAAACTTAACTGTCATGAGC 59.747 43.478 0.00 0.00 0.00 4.26
2887 3477 5.445069 TCCATTTCCATGTGTAATAGTGGG 58.555 41.667 0.00 0.00 32.58 4.61
2922 3513 0.618458 TACCCATGCCAGTTCCAGAC 59.382 55.000 0.00 0.00 0.00 3.51
2933 3561 3.368843 CCAGTTCCAGACGATTCAGTGAT 60.369 47.826 0.00 0.00 0.00 3.06
2974 3602 2.888414 GTGGCTTACTGGCTTTGGTTTA 59.112 45.455 0.00 0.00 42.34 2.01
2987 3615 9.974980 CTGGCTTTGGTTTATAGTTTCTAAAAA 57.025 29.630 0.00 0.00 0.00 1.94
3050 3678 3.875134 CGATTAGCCGAAGTTGGGTTAAT 59.125 43.478 20.78 20.78 41.72 1.40
3064 3692 3.270960 TGGGTTAATTGGGGCATAAGAGT 59.729 43.478 0.00 0.00 0.00 3.24
3170 3798 0.692476 TGTAGGCATGGCAGAACAGT 59.308 50.000 22.64 0.68 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.224042 TGCACTGAAGATGAGTCAACGT 60.224 45.455 0.00 0.00 0.00 3.99
1 2 2.407090 TGCACTGAAGATGAGTCAACG 58.593 47.619 0.00 0.00 0.00 4.10
2 3 3.363378 CGTTGCACTGAAGATGAGTCAAC 60.363 47.826 0.00 0.00 33.18 3.18
3 4 2.802247 CGTTGCACTGAAGATGAGTCAA 59.198 45.455 0.00 0.00 0.00 3.18
4 5 2.224042 ACGTTGCACTGAAGATGAGTCA 60.224 45.455 0.00 0.00 0.00 3.41
5 6 2.408050 ACGTTGCACTGAAGATGAGTC 58.592 47.619 0.00 0.00 0.00 3.36
6 7 2.533266 ACGTTGCACTGAAGATGAGT 57.467 45.000 0.00 0.00 0.00 3.41
7 8 2.926200 CCTACGTTGCACTGAAGATGAG 59.074 50.000 0.00 0.00 0.00 2.90
8 9 2.353704 CCCTACGTTGCACTGAAGATGA 60.354 50.000 0.00 0.00 0.00 2.92
9 10 2.002586 CCCTACGTTGCACTGAAGATG 58.997 52.381 0.00 0.00 0.00 2.90
10 11 1.899814 TCCCTACGTTGCACTGAAGAT 59.100 47.619 0.00 0.00 0.00 2.40
11 12 1.272490 CTCCCTACGTTGCACTGAAGA 59.728 52.381 0.00 0.00 0.00 2.87
12 13 1.673033 CCTCCCTACGTTGCACTGAAG 60.673 57.143 0.00 0.00 0.00 3.02
13 14 0.320374 CCTCCCTACGTTGCACTGAA 59.680 55.000 0.00 0.00 0.00 3.02
14 15 0.830444 ACCTCCCTACGTTGCACTGA 60.830 55.000 0.00 0.00 0.00 3.41
15 16 0.892755 TACCTCCCTACGTTGCACTG 59.107 55.000 0.00 0.00 0.00 3.66
16 17 1.636148 TTACCTCCCTACGTTGCACT 58.364 50.000 0.00 0.00 0.00 4.40
17 18 2.460757 TTTACCTCCCTACGTTGCAC 57.539 50.000 0.00 0.00 0.00 4.57
18 19 3.488778 TTTTTACCTCCCTACGTTGCA 57.511 42.857 0.00 0.00 0.00 4.08
35 36 6.639632 ATCCTATCGCAAGCATGTATTTTT 57.360 33.333 0.00 0.00 37.18 1.94
36 37 6.639632 AATCCTATCGCAAGCATGTATTTT 57.360 33.333 0.00 0.00 37.18 1.82
37 38 6.262944 TCAAATCCTATCGCAAGCATGTATTT 59.737 34.615 0.00 0.00 37.18 1.40
38 39 5.764686 TCAAATCCTATCGCAAGCATGTATT 59.235 36.000 0.00 0.00 37.18 1.89
39 40 5.308014 TCAAATCCTATCGCAAGCATGTAT 58.692 37.500 0.00 0.00 37.18 2.29
40 41 4.702831 TCAAATCCTATCGCAAGCATGTA 58.297 39.130 0.00 0.00 37.18 2.29
41 42 3.544684 TCAAATCCTATCGCAAGCATGT 58.455 40.909 0.00 0.00 37.18 3.21
42 43 4.036027 AGTTCAAATCCTATCGCAAGCATG 59.964 41.667 0.00 0.00 37.18 4.06
43 44 4.202441 AGTTCAAATCCTATCGCAAGCAT 58.798 39.130 0.00 0.00 37.18 3.79
44 45 3.609853 AGTTCAAATCCTATCGCAAGCA 58.390 40.909 0.00 0.00 37.18 3.91
45 46 3.302740 CGAGTTCAAATCCTATCGCAAGC 60.303 47.826 0.00 0.00 37.18 4.01
46 47 4.443850 CGAGTTCAAATCCTATCGCAAG 57.556 45.455 0.00 0.00 0.00 4.01
49 50 2.932167 GCGAGTTCAAATCCTATCGC 57.068 50.000 1.40 1.40 46.97 4.58
50 51 3.001330 GGTTGCGAGTTCAAATCCTATCG 59.999 47.826 0.00 0.00 0.00 2.92
51 52 4.192317 AGGTTGCGAGTTCAAATCCTATC 58.808 43.478 0.00 0.00 0.00 2.08
52 53 4.222124 AGGTTGCGAGTTCAAATCCTAT 57.778 40.909 0.00 0.00 0.00 2.57
53 54 3.695830 AGGTTGCGAGTTCAAATCCTA 57.304 42.857 0.00 0.00 0.00 2.94
54 55 2.568623 AGGTTGCGAGTTCAAATCCT 57.431 45.000 0.00 0.00 0.00 3.24
55 56 2.095212 GGAAGGTTGCGAGTTCAAATCC 60.095 50.000 0.00 0.00 0.00 3.01
56 57 2.552315 TGGAAGGTTGCGAGTTCAAATC 59.448 45.455 0.00 0.00 0.00 2.17
57 58 2.293399 GTGGAAGGTTGCGAGTTCAAAT 59.707 45.455 0.00 0.00 0.00 2.32
58 59 1.673920 GTGGAAGGTTGCGAGTTCAAA 59.326 47.619 0.00 0.00 0.00 2.69
59 60 1.305201 GTGGAAGGTTGCGAGTTCAA 58.695 50.000 0.00 0.00 0.00 2.69
60 61 0.878523 CGTGGAAGGTTGCGAGTTCA 60.879 55.000 0.00 0.00 0.00 3.18
61 62 1.860078 CGTGGAAGGTTGCGAGTTC 59.140 57.895 0.00 0.00 0.00 3.01
62 63 2.251642 GCGTGGAAGGTTGCGAGTT 61.252 57.895 0.00 0.00 0.00 3.01
63 64 2.665185 GCGTGGAAGGTTGCGAGT 60.665 61.111 0.00 0.00 0.00 4.18
64 65 1.577328 ATTGCGTGGAAGGTTGCGAG 61.577 55.000 0.00 0.00 0.00 5.03
65 66 0.320858 TATTGCGTGGAAGGTTGCGA 60.321 50.000 0.00 0.00 0.00 5.10
66 67 0.179200 GTATTGCGTGGAAGGTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
67 68 0.170339 GGTATTGCGTGGAAGGTTGC 59.830 55.000 0.00 0.00 0.00 4.17
68 69 1.737793 GAGGTATTGCGTGGAAGGTTG 59.262 52.381 0.00 0.00 0.00 3.77
69 70 1.628846 AGAGGTATTGCGTGGAAGGTT 59.371 47.619 0.00 0.00 0.00 3.50
70 71 1.276622 AGAGGTATTGCGTGGAAGGT 58.723 50.000 0.00 0.00 0.00 3.50
71 72 2.803492 GCTAGAGGTATTGCGTGGAAGG 60.803 54.545 0.00 0.00 0.00 3.46
72 73 2.159099 TGCTAGAGGTATTGCGTGGAAG 60.159 50.000 0.00 0.00 0.00 3.46
73 74 1.828595 TGCTAGAGGTATTGCGTGGAA 59.171 47.619 0.00 0.00 0.00 3.53
74 75 1.136305 GTGCTAGAGGTATTGCGTGGA 59.864 52.381 0.00 0.00 0.00 4.02
75 76 1.571919 GTGCTAGAGGTATTGCGTGG 58.428 55.000 0.00 0.00 0.00 4.94
76 77 1.134818 TGGTGCTAGAGGTATTGCGTG 60.135 52.381 0.00 0.00 0.00 5.34
77 78 1.191535 TGGTGCTAGAGGTATTGCGT 58.808 50.000 0.00 0.00 0.00 5.24
78 79 2.408050 GATGGTGCTAGAGGTATTGCG 58.592 52.381 0.00 0.00 0.00 4.85
79 80 2.104792 TGGATGGTGCTAGAGGTATTGC 59.895 50.000 0.00 0.00 0.00 3.56
80 81 4.422073 TTGGATGGTGCTAGAGGTATTG 57.578 45.455 0.00 0.00 0.00 1.90
81 82 4.475016 ACTTTGGATGGTGCTAGAGGTATT 59.525 41.667 0.00 0.00 0.00 1.89
82 83 4.040755 ACTTTGGATGGTGCTAGAGGTAT 58.959 43.478 0.00 0.00 0.00 2.73
83 84 3.450904 ACTTTGGATGGTGCTAGAGGTA 58.549 45.455 0.00 0.00 0.00 3.08
84 85 2.269940 ACTTTGGATGGTGCTAGAGGT 58.730 47.619 0.00 0.00 0.00 3.85
85 86 3.054802 AGAACTTTGGATGGTGCTAGAGG 60.055 47.826 0.00 0.00 0.00 3.69
86 87 3.937706 CAGAACTTTGGATGGTGCTAGAG 59.062 47.826 0.00 0.00 0.00 2.43
87 88 3.869912 GCAGAACTTTGGATGGTGCTAGA 60.870 47.826 0.00 0.00 0.00 2.43
88 89 2.421424 GCAGAACTTTGGATGGTGCTAG 59.579 50.000 0.00 0.00 0.00 3.42
89 90 2.436417 GCAGAACTTTGGATGGTGCTA 58.564 47.619 0.00 0.00 0.00 3.49
90 91 1.251251 GCAGAACTTTGGATGGTGCT 58.749 50.000 0.00 0.00 0.00 4.40
91 92 0.244721 GGCAGAACTTTGGATGGTGC 59.755 55.000 0.00 0.00 0.00 5.01
92 93 1.915141 AGGCAGAACTTTGGATGGTG 58.085 50.000 0.00 0.00 0.00 4.17
93 94 4.322057 AATAGGCAGAACTTTGGATGGT 57.678 40.909 0.00 0.00 0.00 3.55
94 95 5.440610 AGTAATAGGCAGAACTTTGGATGG 58.559 41.667 0.00 0.00 0.00 3.51
95 96 6.115446 TGAGTAATAGGCAGAACTTTGGATG 58.885 40.000 0.00 0.00 0.00 3.51
96 97 6.313519 TGAGTAATAGGCAGAACTTTGGAT 57.686 37.500 0.00 0.00 0.00 3.41
97 98 5.755409 TGAGTAATAGGCAGAACTTTGGA 57.245 39.130 0.00 0.00 0.00 3.53
98 99 5.705441 TGTTGAGTAATAGGCAGAACTTTGG 59.295 40.000 0.00 0.00 0.00 3.28
99 100 6.204688 TGTGTTGAGTAATAGGCAGAACTTTG 59.795 38.462 0.00 0.00 0.00 2.77
100 101 6.296026 TGTGTTGAGTAATAGGCAGAACTTT 58.704 36.000 0.00 0.00 0.00 2.66
101 102 5.865085 TGTGTTGAGTAATAGGCAGAACTT 58.135 37.500 0.00 0.00 0.00 2.66
102 103 5.482908 CTGTGTTGAGTAATAGGCAGAACT 58.517 41.667 0.00 0.00 0.00 3.01
103 104 4.093556 GCTGTGTTGAGTAATAGGCAGAAC 59.906 45.833 0.00 0.00 0.00 3.01
104 105 4.020218 AGCTGTGTTGAGTAATAGGCAGAA 60.020 41.667 0.00 0.00 0.00 3.02
105 106 3.515502 AGCTGTGTTGAGTAATAGGCAGA 59.484 43.478 0.00 0.00 0.00 4.26
106 107 3.866651 AGCTGTGTTGAGTAATAGGCAG 58.133 45.455 0.00 0.00 0.00 4.85
107 108 3.981071 AGCTGTGTTGAGTAATAGGCA 57.019 42.857 0.00 0.00 0.00 4.75
108 109 4.695455 TCAAAGCTGTGTTGAGTAATAGGC 59.305 41.667 3.21 0.00 31.45 3.93
109 110 6.414408 CTCAAAGCTGTGTTGAGTAATAGG 57.586 41.667 15.59 0.00 44.58 2.57
117 118 6.545666 TCTTAAATTCCTCAAAGCTGTGTTGA 59.454 34.615 3.21 1.22 33.97 3.18
118 119 6.738114 TCTTAAATTCCTCAAAGCTGTGTTG 58.262 36.000 3.21 0.00 0.00 3.33
119 120 6.959639 TCTTAAATTCCTCAAAGCTGTGTT 57.040 33.333 3.21 0.00 0.00 3.32
120 121 6.959639 TTCTTAAATTCCTCAAAGCTGTGT 57.040 33.333 3.21 0.00 0.00 3.72
121 122 7.373493 ACATTCTTAAATTCCTCAAAGCTGTG 58.627 34.615 0.00 0.00 0.00 3.66
122 123 7.231317 TGACATTCTTAAATTCCTCAAAGCTGT 59.769 33.333 0.00 0.00 0.00 4.40
123 124 7.596494 TGACATTCTTAAATTCCTCAAAGCTG 58.404 34.615 0.00 0.00 0.00 4.24
124 125 7.667219 TCTGACATTCTTAAATTCCTCAAAGCT 59.333 33.333 0.00 0.00 0.00 3.74
125 126 7.752686 GTCTGACATTCTTAAATTCCTCAAAGC 59.247 37.037 2.24 0.00 0.00 3.51
126 127 8.786898 TGTCTGACATTCTTAAATTCCTCAAAG 58.213 33.333 6.36 0.00 0.00 2.77
127 128 8.690203 TGTCTGACATTCTTAAATTCCTCAAA 57.310 30.769 6.36 0.00 0.00 2.69
128 129 8.690203 TTGTCTGACATTCTTAAATTCCTCAA 57.310 30.769 11.86 0.00 0.00 3.02
129 130 7.094634 GCTTGTCTGACATTCTTAAATTCCTCA 60.095 37.037 11.86 0.00 0.00 3.86
130 131 7.247019 GCTTGTCTGACATTCTTAAATTCCTC 58.753 38.462 11.86 0.00 0.00 3.71
131 132 6.151817 GGCTTGTCTGACATTCTTAAATTCCT 59.848 38.462 11.86 0.00 0.00 3.36
132 133 6.325596 GGCTTGTCTGACATTCTTAAATTCC 58.674 40.000 11.86 0.00 0.00 3.01
133 134 6.024049 CGGCTTGTCTGACATTCTTAAATTC 58.976 40.000 11.86 0.00 0.00 2.17
134 135 5.619981 GCGGCTTGTCTGACATTCTTAAATT 60.620 40.000 11.86 0.00 0.00 1.82
135 136 4.142600 GCGGCTTGTCTGACATTCTTAAAT 60.143 41.667 11.86 0.00 0.00 1.40
136 137 3.188460 GCGGCTTGTCTGACATTCTTAAA 59.812 43.478 11.86 0.00 0.00 1.52
137 138 2.742053 GCGGCTTGTCTGACATTCTTAA 59.258 45.455 11.86 0.00 0.00 1.85
138 139 2.346803 GCGGCTTGTCTGACATTCTTA 58.653 47.619 11.86 0.00 0.00 2.10
139 140 1.160137 GCGGCTTGTCTGACATTCTT 58.840 50.000 11.86 0.00 0.00 2.52
140 141 1.016130 CGCGGCTTGTCTGACATTCT 61.016 55.000 11.86 0.00 0.00 2.40
141 142 1.291877 ACGCGGCTTGTCTGACATTC 61.292 55.000 12.47 6.32 0.00 2.67
142 143 0.884704 AACGCGGCTTGTCTGACATT 60.885 50.000 12.47 0.00 0.00 2.71
143 144 1.301716 AACGCGGCTTGTCTGACAT 60.302 52.632 12.47 0.00 0.00 3.06
144 145 2.108157 AACGCGGCTTGTCTGACA 59.892 55.556 12.47 6.36 0.00 3.58
145 146 2.551270 CAACGCGGCTTGTCTGAC 59.449 61.111 12.47 0.00 0.00 3.51
146 147 2.664851 CCAACGCGGCTTGTCTGA 60.665 61.111 12.47 0.00 0.00 3.27
155 156 2.811317 GAGAGAGTGCCAACGCGG 60.811 66.667 12.47 0.00 38.08 6.46
156 157 2.049156 TGAGAGAGTGCCAACGCG 60.049 61.111 3.53 3.53 38.08 6.01
157 158 0.735632 CTCTGAGAGAGTGCCAACGC 60.736 60.000 2.60 0.00 37.57 4.84
158 159 3.415237 CTCTGAGAGAGTGCCAACG 57.585 57.895 2.60 0.00 37.57 4.10
167 168 2.303311 TGTCTTCCTCGACTCTGAGAGA 59.697 50.000 17.71 9.25 38.28 3.10
168 169 2.705730 TGTCTTCCTCGACTCTGAGAG 58.294 52.381 12.44 8.15 38.28 3.20
169 170 2.861147 TGTCTTCCTCGACTCTGAGA 57.139 50.000 12.44 0.00 38.28 3.27
170 171 2.098934 CCATGTCTTCCTCGACTCTGAG 59.901 54.545 2.45 2.45 35.00 3.35
171 172 2.095461 CCATGTCTTCCTCGACTCTGA 58.905 52.381 0.00 0.00 35.00 3.27
172 173 1.470632 GCCATGTCTTCCTCGACTCTG 60.471 57.143 0.00 0.00 35.00 3.35
173 174 0.820871 GCCATGTCTTCCTCGACTCT 59.179 55.000 0.00 0.00 35.00 3.24
174 175 0.179097 GGCCATGTCTTCCTCGACTC 60.179 60.000 0.00 0.00 35.00 3.36
175 176 1.617947 GGGCCATGTCTTCCTCGACT 61.618 60.000 4.39 0.00 35.00 4.18
176 177 1.153349 GGGCCATGTCTTCCTCGAC 60.153 63.158 4.39 0.00 34.52 4.20
177 178 0.982852 ATGGGCCATGTCTTCCTCGA 60.983 55.000 20.49 0.00 0.00 4.04
178 179 0.758734 TATGGGCCATGTCTTCCTCG 59.241 55.000 29.14 0.00 0.00 4.63
179 180 3.327757 TGTATATGGGCCATGTCTTCCTC 59.672 47.826 29.14 10.45 0.00 3.71
180 181 3.326521 TGTATATGGGCCATGTCTTCCT 58.673 45.455 29.14 2.89 0.00 3.36
181 182 3.073062 ACTGTATATGGGCCATGTCTTCC 59.927 47.826 29.14 11.43 0.00 3.46
182 183 4.357918 ACTGTATATGGGCCATGTCTTC 57.642 45.455 29.14 15.71 0.00 2.87
183 184 6.500400 TGTATACTGTATATGGGCCATGTCTT 59.500 38.462 29.14 12.96 0.00 3.01
184 185 6.022958 TGTATACTGTATATGGGCCATGTCT 58.977 40.000 29.14 15.24 0.00 3.41
185 186 6.106673 GTGTATACTGTATATGGGCCATGTC 58.893 44.000 29.14 17.76 0.00 3.06
186 187 5.546110 TGTGTATACTGTATATGGGCCATGT 59.454 40.000 29.14 24.49 0.00 3.21
187 188 6.048732 TGTGTATACTGTATATGGGCCATG 57.951 41.667 29.14 14.06 0.00 3.66
188 189 6.696042 TTGTGTATACTGTATATGGGCCAT 57.304 37.500 24.69 24.69 0.00 4.40
189 190 6.502074 TTTGTGTATACTGTATATGGGCCA 57.498 37.500 9.61 9.61 0.00 5.36
190 191 9.681062 ATTATTTGTGTATACTGTATATGGGCC 57.319 33.333 10.49 0.00 0.00 5.80
210 211 9.730420 GGTGAACAACGCTAAATATGATTATTT 57.270 29.630 0.00 0.00 40.36 1.40
211 212 8.349983 GGGTGAACAACGCTAAATATGATTATT 58.650 33.333 0.00 0.00 38.66 1.40
212 213 7.307751 CGGGTGAACAACGCTAAATATGATTAT 60.308 37.037 0.00 0.00 39.54 1.28
213 214 6.018588 CGGGTGAACAACGCTAAATATGATTA 60.019 38.462 0.00 0.00 39.54 1.75
214 215 5.220777 CGGGTGAACAACGCTAAATATGATT 60.221 40.000 0.00 0.00 39.54 2.57
215 216 4.272504 CGGGTGAACAACGCTAAATATGAT 59.727 41.667 0.00 0.00 39.54 2.45
216 217 3.619483 CGGGTGAACAACGCTAAATATGA 59.381 43.478 0.00 0.00 39.54 2.15
217 218 3.619483 TCGGGTGAACAACGCTAAATATG 59.381 43.478 0.00 0.00 39.54 1.78
218 219 3.864243 TCGGGTGAACAACGCTAAATAT 58.136 40.909 0.00 0.00 39.54 1.28
219 220 3.316071 TCGGGTGAACAACGCTAAATA 57.684 42.857 0.00 0.00 39.54 1.40
220 221 2.172851 TCGGGTGAACAACGCTAAAT 57.827 45.000 0.00 0.00 39.54 1.40
221 222 1.950828 TTCGGGTGAACAACGCTAAA 58.049 45.000 0.00 0.00 39.54 1.85
222 223 2.070783 GATTCGGGTGAACAACGCTAA 58.929 47.619 0.00 0.00 39.54 3.09
223 224 1.001068 TGATTCGGGTGAACAACGCTA 59.999 47.619 0.00 0.00 39.54 4.26
224 225 0.250124 TGATTCGGGTGAACAACGCT 60.250 50.000 0.00 0.00 39.54 5.07
225 226 0.165944 CTGATTCGGGTGAACAACGC 59.834 55.000 0.00 0.00 36.81 4.84
226 227 0.165944 GCTGATTCGGGTGAACAACG 59.834 55.000 0.00 0.00 36.81 4.10
227 228 1.197721 CAGCTGATTCGGGTGAACAAC 59.802 52.381 17.84 0.00 40.24 3.32
228 229 1.071542 TCAGCTGATTCGGGTGAACAA 59.928 47.619 21.86 2.76 43.04 2.83
229 230 0.684535 TCAGCTGATTCGGGTGAACA 59.315 50.000 21.86 3.09 43.04 3.18
230 231 1.079503 GTCAGCTGATTCGGGTGAAC 58.920 55.000 24.80 16.40 46.56 3.18
231 232 0.976641 AGTCAGCTGATTCGGGTGAA 59.023 50.000 24.80 9.96 46.56 3.18
232 233 1.847328 TAGTCAGCTGATTCGGGTGA 58.153 50.000 21.47 20.61 43.64 4.02
233 234 2.546795 GGATAGTCAGCTGATTCGGGTG 60.547 54.545 21.47 16.83 39.31 4.61
234 235 1.689273 GGATAGTCAGCTGATTCGGGT 59.311 52.381 21.47 2.93 0.00 5.28
235 236 1.688735 TGGATAGTCAGCTGATTCGGG 59.311 52.381 21.47 0.00 0.00 5.14
236 237 3.244009 ACATGGATAGTCAGCTGATTCGG 60.244 47.826 21.47 12.02 0.00 4.30
237 238 3.986572 GACATGGATAGTCAGCTGATTCG 59.013 47.826 21.47 7.67 36.06 3.34
238 239 4.040217 AGGACATGGATAGTCAGCTGATTC 59.960 45.833 21.47 16.35 37.74 2.52
239 240 3.972638 AGGACATGGATAGTCAGCTGATT 59.027 43.478 21.47 18.83 37.74 2.57
240 241 3.324268 CAGGACATGGATAGTCAGCTGAT 59.676 47.826 21.47 11.46 37.74 2.90
241 242 2.697229 CAGGACATGGATAGTCAGCTGA 59.303 50.000 13.74 13.74 37.74 4.26
242 243 2.697229 TCAGGACATGGATAGTCAGCTG 59.303 50.000 7.63 7.63 37.74 4.24
243 244 3.037851 TCAGGACATGGATAGTCAGCT 57.962 47.619 0.00 0.00 37.74 4.24
244 245 3.133721 AGTTCAGGACATGGATAGTCAGC 59.866 47.826 0.00 0.00 37.74 4.26
245 246 6.453943 CATAGTTCAGGACATGGATAGTCAG 58.546 44.000 0.00 0.00 37.74 3.51
246 247 5.221521 GCATAGTTCAGGACATGGATAGTCA 60.222 44.000 0.00 0.00 37.74 3.41
247 248 5.233988 GCATAGTTCAGGACATGGATAGTC 58.766 45.833 0.00 0.00 35.29 2.59
248 249 4.262207 CGCATAGTTCAGGACATGGATAGT 60.262 45.833 0.00 0.00 0.00 2.12
249 250 4.240888 CGCATAGTTCAGGACATGGATAG 58.759 47.826 0.00 0.00 0.00 2.08
250 251 3.641436 ACGCATAGTTCAGGACATGGATA 59.359 43.478 0.00 0.00 0.00 2.59
251 252 2.435805 ACGCATAGTTCAGGACATGGAT 59.564 45.455 0.00 0.00 0.00 3.41
252 253 1.831106 ACGCATAGTTCAGGACATGGA 59.169 47.619 0.00 0.00 0.00 3.41
253 254 2.205074 GACGCATAGTTCAGGACATGG 58.795 52.381 0.00 0.00 0.00 3.66
254 255 2.604914 GTGACGCATAGTTCAGGACATG 59.395 50.000 0.00 0.00 0.00 3.21
255 256 2.233676 TGTGACGCATAGTTCAGGACAT 59.766 45.455 0.00 0.00 0.00 3.06
256 257 1.616374 TGTGACGCATAGTTCAGGACA 59.384 47.619 0.00 0.00 0.00 4.02
257 258 2.363788 TGTGACGCATAGTTCAGGAC 57.636 50.000 0.00 0.00 0.00 3.85
258 259 2.683968 GTTGTGACGCATAGTTCAGGA 58.316 47.619 0.00 0.00 0.00 3.86
259 260 1.390123 CGTTGTGACGCATAGTTCAGG 59.610 52.381 0.00 0.00 43.03 3.86
260 261 2.769387 CGTTGTGACGCATAGTTCAG 57.231 50.000 0.00 0.00 43.03 3.02
271 272 8.077386 TCAATTAAAAATAGGGTTCGTTGTGAC 58.923 33.333 0.00 0.00 0.00 3.67
272 273 8.167605 TCAATTAAAAATAGGGTTCGTTGTGA 57.832 30.769 0.00 0.00 0.00 3.58
273 274 8.804688 TTCAATTAAAAATAGGGTTCGTTGTG 57.195 30.769 0.00 0.00 0.00 3.33
274 275 9.634163 GATTCAATTAAAAATAGGGTTCGTTGT 57.366 29.630 0.00 0.00 0.00 3.32
275 276 9.632807 TGATTCAATTAAAAATAGGGTTCGTTG 57.367 29.630 0.00 0.00 0.00 4.10
298 299 9.618890 AGCAGACTTGTACATACAAAATATGAT 57.381 29.630 0.00 1.78 44.67 2.45
302 303 9.325198 CCATAGCAGACTTGTACATACAAAATA 57.675 33.333 0.00 0.00 44.67 1.40
303 304 7.829211 ACCATAGCAGACTTGTACATACAAAAT 59.171 33.333 0.00 0.00 44.67 1.82
304 305 7.165485 ACCATAGCAGACTTGTACATACAAAA 58.835 34.615 0.00 0.00 44.67 2.44
305 306 6.707290 ACCATAGCAGACTTGTACATACAAA 58.293 36.000 0.00 0.00 44.67 2.83
306 307 6.294361 ACCATAGCAGACTTGTACATACAA 57.706 37.500 0.00 4.48 43.32 2.41
307 308 5.932619 ACCATAGCAGACTTGTACATACA 57.067 39.130 0.00 0.00 0.00 2.29
308 309 8.888579 AATAACCATAGCAGACTTGTACATAC 57.111 34.615 0.00 0.00 0.00 2.39
310 311 8.150945 CCTAATAACCATAGCAGACTTGTACAT 58.849 37.037 0.00 0.00 0.00 2.29
311 312 7.418597 CCCTAATAACCATAGCAGACTTGTACA 60.419 40.741 0.00 0.00 0.00 2.90
312 313 6.929606 CCCTAATAACCATAGCAGACTTGTAC 59.070 42.308 0.00 0.00 0.00 2.90
313 314 6.614087 ACCCTAATAACCATAGCAGACTTGTA 59.386 38.462 0.00 0.00 0.00 2.41
314 315 5.428783 ACCCTAATAACCATAGCAGACTTGT 59.571 40.000 0.00 0.00 0.00 3.16
315 316 5.760253 CACCCTAATAACCATAGCAGACTTG 59.240 44.000 0.00 0.00 0.00 3.16
316 317 5.687706 GCACCCTAATAACCATAGCAGACTT 60.688 44.000 0.00 0.00 0.00 3.01
317 318 4.202367 GCACCCTAATAACCATAGCAGACT 60.202 45.833 0.00 0.00 0.00 3.24
318 319 4.065789 GCACCCTAATAACCATAGCAGAC 58.934 47.826 0.00 0.00 0.00 3.51
319 320 3.973973 AGCACCCTAATAACCATAGCAGA 59.026 43.478 0.00 0.00 0.00 4.26
320 321 4.357918 AGCACCCTAATAACCATAGCAG 57.642 45.455 0.00 0.00 0.00 4.24
321 322 5.152193 TCTAGCACCCTAATAACCATAGCA 58.848 41.667 0.00 0.00 0.00 3.49
322 323 5.740290 TCTAGCACCCTAATAACCATAGC 57.260 43.478 0.00 0.00 0.00 2.97
323 324 7.726033 AGATCTAGCACCCTAATAACCATAG 57.274 40.000 0.00 0.00 0.00 2.23
324 325 7.956315 AGAAGATCTAGCACCCTAATAACCATA 59.044 37.037 0.00 0.00 0.00 2.74
325 326 6.789959 AGAAGATCTAGCACCCTAATAACCAT 59.210 38.462 0.00 0.00 0.00 3.55
326 327 6.143915 AGAAGATCTAGCACCCTAATAACCA 58.856 40.000 0.00 0.00 0.00 3.67
327 328 6.673839 AGAAGATCTAGCACCCTAATAACC 57.326 41.667 0.00 0.00 0.00 2.85
328 329 8.966069 AAAAGAAGATCTAGCACCCTAATAAC 57.034 34.615 0.00 0.00 0.00 1.89
329 330 8.993424 AGAAAAGAAGATCTAGCACCCTAATAA 58.007 33.333 0.00 0.00 0.00 1.40
330 331 8.554490 AGAAAAGAAGATCTAGCACCCTAATA 57.446 34.615 0.00 0.00 0.00 0.98
331 332 7.419634 GGAGAAAAGAAGATCTAGCACCCTAAT 60.420 40.741 0.00 0.00 0.00 1.73
332 333 6.127026 GGAGAAAAGAAGATCTAGCACCCTAA 60.127 42.308 0.00 0.00 0.00 2.69
333 334 5.364157 GGAGAAAAGAAGATCTAGCACCCTA 59.636 44.000 0.00 0.00 0.00 3.53
334 335 4.163268 GGAGAAAAGAAGATCTAGCACCCT 59.837 45.833 0.00 0.00 0.00 4.34
335 336 4.447290 GGAGAAAAGAAGATCTAGCACCC 58.553 47.826 0.00 0.00 0.00 4.61
336 337 4.447290 GGGAGAAAAGAAGATCTAGCACC 58.553 47.826 0.00 0.00 0.00 5.01
337 338 4.116238 CGGGAGAAAAGAAGATCTAGCAC 58.884 47.826 0.00 0.00 0.00 4.40
338 339 3.769844 ACGGGAGAAAAGAAGATCTAGCA 59.230 43.478 0.00 0.00 0.00 3.49
339 340 4.394439 ACGGGAGAAAAGAAGATCTAGC 57.606 45.455 0.00 0.00 0.00 3.42
340 341 4.568760 GCAACGGGAGAAAAGAAGATCTAG 59.431 45.833 0.00 0.00 0.00 2.43
341 342 4.020573 TGCAACGGGAGAAAAGAAGATCTA 60.021 41.667 0.00 0.00 0.00 1.98
342 343 3.244561 TGCAACGGGAGAAAAGAAGATCT 60.245 43.478 0.00 0.00 0.00 2.75
343 344 3.074412 TGCAACGGGAGAAAAGAAGATC 58.926 45.455 0.00 0.00 0.00 2.75
344 345 3.140325 TGCAACGGGAGAAAAGAAGAT 57.860 42.857 0.00 0.00 0.00 2.40
345 346 2.616842 GTTGCAACGGGAGAAAAGAAGA 59.383 45.455 14.90 0.00 0.00 2.87
346 347 3.000082 GTTGCAACGGGAGAAAAGAAG 58.000 47.619 14.90 0.00 0.00 2.85
359 360 2.662091 AAAGGCTCGTGCGTTGCAAC 62.662 55.000 19.89 19.89 45.11 4.17
360 361 1.999071 AAAAGGCTCGTGCGTTGCAA 61.999 50.000 16.94 0.00 45.11 4.08
361 362 1.999071 AAAAAGGCTCGTGCGTTGCA 61.999 50.000 16.94 0.00 45.11 4.08
362 363 1.299089 AAAAAGGCTCGTGCGTTGC 60.299 52.632 16.94 0.00 45.11 4.17
363 364 1.539776 GCAAAAAGGCTCGTGCGTTG 61.540 55.000 16.94 12.14 45.11 4.10
365 366 0.882927 TAGCAAAAAGGCTCGTGCGT 60.883 50.000 3.02 0.42 44.54 5.24
366 367 0.179215 CTAGCAAAAAGGCTCGTGCG 60.179 55.000 3.02 0.00 44.54 5.34
367 368 0.875059 ACTAGCAAAAAGGCTCGTGC 59.125 50.000 0.00 0.00 44.54 5.34
368 369 3.994392 TCTTACTAGCAAAAAGGCTCGTG 59.006 43.478 3.01 0.00 44.54 4.35
369 370 4.267349 TCTTACTAGCAAAAAGGCTCGT 57.733 40.909 0.00 0.00 44.54 4.18
370 371 5.803020 ATTCTTACTAGCAAAAAGGCTCG 57.197 39.130 0.00 0.00 44.54 5.03
371 372 8.947115 TCTTTATTCTTACTAGCAAAAAGGCTC 58.053 33.333 0.00 0.00 44.54 4.70
378 379 8.893727 GGCTCAATCTTTATTCTTACTAGCAAA 58.106 33.333 0.00 0.00 0.00 3.68
379 380 7.224753 CGGCTCAATCTTTATTCTTACTAGCAA 59.775 37.037 0.00 0.00 0.00 3.91
380 381 6.701841 CGGCTCAATCTTTATTCTTACTAGCA 59.298 38.462 0.00 0.00 0.00 3.49
381 382 6.924060 TCGGCTCAATCTTTATTCTTACTAGC 59.076 38.462 0.00 0.00 0.00 3.42
382 383 7.382759 GGTCGGCTCAATCTTTATTCTTACTAG 59.617 40.741 0.00 0.00 0.00 2.57
383 384 7.069578 AGGTCGGCTCAATCTTTATTCTTACTA 59.930 37.037 0.00 0.00 0.00 1.82
384 385 6.049790 GGTCGGCTCAATCTTTATTCTTACT 58.950 40.000 0.00 0.00 0.00 2.24
385 386 6.049790 AGGTCGGCTCAATCTTTATTCTTAC 58.950 40.000 0.00 0.00 0.00 2.34
386 387 6.235231 AGGTCGGCTCAATCTTTATTCTTA 57.765 37.500 0.00 0.00 0.00 2.10
387 388 5.104259 AGGTCGGCTCAATCTTTATTCTT 57.896 39.130 0.00 0.00 0.00 2.52
388 389 4.762289 AGGTCGGCTCAATCTTTATTCT 57.238 40.909 0.00 0.00 0.00 2.40
389 390 4.636206 ACAAGGTCGGCTCAATCTTTATTC 59.364 41.667 0.00 0.00 0.00 1.75
390 391 4.589908 ACAAGGTCGGCTCAATCTTTATT 58.410 39.130 0.00 0.00 0.00 1.40
391 392 4.222124 ACAAGGTCGGCTCAATCTTTAT 57.778 40.909 0.00 0.00 0.00 1.40
392 393 3.695830 ACAAGGTCGGCTCAATCTTTA 57.304 42.857 0.00 0.00 0.00 1.85
393 394 2.568623 ACAAGGTCGGCTCAATCTTT 57.431 45.000 0.00 0.00 0.00 2.52
394 395 2.568623 AACAAGGTCGGCTCAATCTT 57.431 45.000 0.00 0.00 0.00 2.40
404 405 8.347035 TGATACTTAAAAGGAAAAACAAGGTCG 58.653 33.333 0.00 0.00 0.00 4.79
456 457 5.728471 CCTGTCTGATTCACATGTTAGACT 58.272 41.667 17.51 2.06 36.43 3.24
460 461 3.264193 AGGCCTGTCTGATTCACATGTTA 59.736 43.478 3.11 0.00 0.00 2.41
463 464 2.014857 CAGGCCTGTCTGATTCACATG 58.985 52.381 25.53 0.00 36.93 3.21
488 489 3.170717 TCGTTTGGAAGATAGACCCACT 58.829 45.455 0.00 0.00 0.00 4.00
489 490 3.604875 TCGTTTGGAAGATAGACCCAC 57.395 47.619 0.00 0.00 0.00 4.61
490 491 4.030913 AGATCGTTTGGAAGATAGACCCA 58.969 43.478 0.00 0.00 0.00 4.51
491 492 4.501743 GGAGATCGTTTGGAAGATAGACCC 60.502 50.000 0.00 0.00 0.00 4.46
492 493 4.342665 AGGAGATCGTTTGGAAGATAGACC 59.657 45.833 0.00 0.00 0.00 3.85
493 494 5.523438 AGGAGATCGTTTGGAAGATAGAC 57.477 43.478 0.00 0.00 0.00 2.59
532 533 2.417933 GCACAGAAATGCGACAAGATCT 59.582 45.455 0.00 0.00 35.50 2.75
608 609 4.025015 TCTTTACGAGAATACACTCCGC 57.975 45.455 0.00 0.00 33.83 5.54
609 610 5.481200 TCTCTTTACGAGAATACACTCCG 57.519 43.478 0.00 0.00 45.55 4.63
621 629 6.945938 TTTCCCAACATTTTCTCTTTACGA 57.054 33.333 0.00 0.00 0.00 3.43
630 638 3.732212 AGCTGCTTTTCCCAACATTTTC 58.268 40.909 0.00 0.00 0.00 2.29
640 648 2.431430 GCGCCAAGCTGCTTTTCC 60.431 61.111 13.10 3.04 44.04 3.13
659 667 1.534028 CGCCCGAAATTTCACATTCG 58.466 50.000 17.99 9.30 45.91 3.34
660 668 1.268265 GCGCCCGAAATTTCACATTC 58.732 50.000 17.99 0.70 0.00 2.67
701 709 4.890581 TCTCAGGTCTCACTCTTAATAGGC 59.109 45.833 0.00 0.00 0.00 3.93
706 714 6.153680 GGATTTCTCTCAGGTCTCACTCTTAA 59.846 42.308 0.00 0.00 0.00 1.85
731 739 3.190079 TCGCTTTTGAAGGATCAGATCG 58.810 45.455 4.23 0.00 36.78 3.69
755 763 5.258051 ACAGGAGTACTACTTCTCAAGAGG 58.742 45.833 4.33 0.00 29.65 3.69
777 789 4.200092 GTTTCTCTCCCATGGTTCCATAC 58.800 47.826 11.73 0.00 0.00 2.39
853 865 1.175347 CCAGGAGATCATCGCCGAGA 61.175 60.000 1.16 0.00 41.52 4.04
952 965 2.279517 GTAGATGGCTGGGACGCG 60.280 66.667 3.53 3.53 0.00 6.01
1144 1160 1.671979 TCGTCGTCCGAATCTATGGT 58.328 50.000 0.00 0.00 44.03 3.55
1246 1262 1.299850 CATACGCGGCGAGATCCAA 60.300 57.895 30.94 5.26 0.00 3.53
1437 1459 0.745845 GCGACTCAAGCATGTCCCAT 60.746 55.000 0.00 0.00 34.19 4.00
1447 1469 2.202570 CGTACCGGGCGACTCAAG 60.203 66.667 14.28 0.00 0.00 3.02
1469 1491 4.996758 TGCATGGGATGAAGTTATACATCG 59.003 41.667 0.00 0.00 42.34 3.84
1470 1492 5.106396 GCTGCATGGGATGAAGTTATACATC 60.106 44.000 0.00 0.00 38.26 3.06
1471 1493 4.763793 GCTGCATGGGATGAAGTTATACAT 59.236 41.667 0.00 0.00 38.26 2.29
1482 1507 2.124612 TCGGTGCTGCATGGGATG 60.125 61.111 5.27 0.00 0.00 3.51
1536 1561 0.763223 ACCGGGACTTCTTGGTGTCT 60.763 55.000 6.32 0.00 32.33 3.41
1590 1615 1.474077 GACCACACCATTGCTTCCATC 59.526 52.381 0.00 0.00 0.00 3.51
1897 1922 3.496884 GTGGTGTTCAGATTTAGCACGAA 59.503 43.478 0.00 0.00 32.80 3.85
1899 1924 2.805671 TGTGGTGTTCAGATTTAGCACG 59.194 45.455 0.00 0.00 42.61 5.34
2019 2044 4.794169 TCAAGCGCCTTGAAATTTCTTAC 58.206 39.130 18.64 5.57 45.84 2.34
2030 2055 2.016318 TCCATTGTATCAAGCGCCTTG 58.984 47.619 2.29 8.58 42.25 3.61
2031 2056 2.292267 CTCCATTGTATCAAGCGCCTT 58.708 47.619 2.29 0.00 0.00 4.35
2032 2057 1.210478 ACTCCATTGTATCAAGCGCCT 59.790 47.619 2.29 0.00 0.00 5.52
2033 2058 1.668419 ACTCCATTGTATCAAGCGCC 58.332 50.000 2.29 0.00 0.00 6.53
2034 2059 2.802816 CCTACTCCATTGTATCAAGCGC 59.197 50.000 0.00 0.00 0.00 5.92
2035 2060 4.060038 ACCTACTCCATTGTATCAAGCG 57.940 45.455 0.00 0.00 0.00 4.68
2036 2061 7.445945 AGATTACCTACTCCATTGTATCAAGC 58.554 38.462 0.00 0.00 0.00 4.01
2080 2119 9.758651 AAGTACAACCAAAAGGAAACAAATATC 57.241 29.630 0.00 0.00 0.00 1.63
2087 2126 5.585820 TGGAAGTACAACCAAAAGGAAAC 57.414 39.130 8.28 0.00 32.93 2.78
2139 2178 0.615331 TCCTGATCTGGGTGAGCAAC 59.385 55.000 17.73 0.00 40.87 4.17
2354 2394 5.743026 TGTAATCAAGTCACTCGCAAAAA 57.257 34.783 0.00 0.00 0.00 1.94
2355 2395 5.940192 ATGTAATCAAGTCACTCGCAAAA 57.060 34.783 0.00 0.00 0.00 2.44
2358 2398 6.871492 TCTTTTATGTAATCAAGTCACTCGCA 59.129 34.615 0.00 0.00 0.00 5.10
2359 2399 7.063544 AGTCTTTTATGTAATCAAGTCACTCGC 59.936 37.037 0.00 0.00 0.00 5.03
2360 2400 8.376203 CAGTCTTTTATGTAATCAAGTCACTCG 58.624 37.037 0.00 0.00 0.00 4.18
2361 2401 8.660373 CCAGTCTTTTATGTAATCAAGTCACTC 58.340 37.037 0.00 0.00 0.00 3.51
2362 2402 8.375506 TCCAGTCTTTTATGTAATCAAGTCACT 58.624 33.333 0.00 0.00 0.00 3.41
2394 2434 7.662897 TCCCAATAAACAAAATGGAGTTACAC 58.337 34.615 0.00 0.00 34.82 2.90
2516 2557 8.570068 TCACCTGCAATATGTATACTCGTATA 57.430 34.615 4.17 0.00 0.00 1.47
2638 2704 3.119173 CCTGAAAACCAACTGAAGCAACA 60.119 43.478 0.00 0.00 0.00 3.33
2681 2747 5.057149 GTGCAAACTATGACCCAGTATAGG 58.943 45.833 0.00 0.00 32.45 2.57
2684 2750 3.265737 TGGTGCAAACTATGACCCAGTAT 59.734 43.478 0.00 0.00 31.82 2.12
2776 3360 1.153469 CAGGCGAGGAGGAAAGCTC 60.153 63.158 0.00 0.00 0.00 4.09
2779 3363 1.661341 CATTCAGGCGAGGAGGAAAG 58.339 55.000 0.00 0.00 0.00 2.62
2813 3397 6.526674 GCATTCGAACTAACCAAATAAACAGG 59.473 38.462 0.00 0.00 0.00 4.00
2816 3400 7.753132 TCATGCATTCGAACTAACCAAATAAAC 59.247 33.333 0.00 0.00 0.00 2.01
2887 3477 6.018016 GGCATGGGTACATAAATGCATTTTTC 60.018 38.462 28.45 14.23 45.72 2.29
2933 3561 5.511545 GCCACCCACCACAAAATATAACAAA 60.512 40.000 0.00 0.00 0.00 2.83
2987 3615 7.899973 ACTTGACCTGAAATGCAAAGATTATT 58.100 30.769 0.00 0.00 0.00 1.40
3050 3678 2.092429 GGATGACACTCTTATGCCCCAA 60.092 50.000 0.00 0.00 0.00 4.12
3064 3692 4.622260 TCAAACTGACATCTGGATGACA 57.378 40.909 16.27 14.53 41.20 3.58
3170 3798 0.601046 CAGCTGTTGTCGGAGCAAGA 60.601 55.000 5.25 0.00 37.70 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.