Multiple sequence alignment - TraesCS3A01G267000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G267000 chr3A 100.000 3689 0 0 1 3689 491785635 491789323 0.000000e+00 6813.0
1 TraesCS3A01G267000 chr3A 93.475 3203 162 26 506 3689 480962146 480965320 0.000000e+00 4713.0
2 TraesCS3A01G267000 chr3A 87.822 854 99 3 2753 3602 317820902 317821754 0.000000e+00 996.0
3 TraesCS3A01G267000 chr3A 86.972 852 104 5 2759 3605 285848869 285848020 0.000000e+00 952.0
4 TraesCS3A01G267000 chr3A 86.737 852 102 5 2759 3605 250279558 250278713 0.000000e+00 937.0
5 TraesCS3A01G267000 chr3A 86.550 855 104 5 2753 3602 258171377 258172225 0.000000e+00 931.0
6 TraesCS3A01G267000 chr3A 82.288 909 114 28 506 1404 281900770 281901641 0.000000e+00 743.0
7 TraesCS3A01G267000 chr3A 81.798 912 119 31 507 1404 258166492 258167370 0.000000e+00 721.0
8 TraesCS3A01G267000 chr3A 81.338 927 114 38 498 1404 317816000 317816887 0.000000e+00 699.0
9 TraesCS3A01G267000 chr3A 94.631 447 20 4 90 535 352866393 352865950 0.000000e+00 689.0
10 TraesCS3A01G267000 chr3A 95.765 425 15 3 90 514 23069171 23068750 0.000000e+00 682.0
11 TraesCS3A01G267000 chr3A 80.984 915 119 33 504 1404 250284443 250283570 0.000000e+00 675.0
12 TraesCS3A01G267000 chr3A 95.283 424 19 1 90 512 614592827 614593250 0.000000e+00 671.0
13 TraesCS3A01G267000 chr3A 94.588 425 19 3 90 514 244795065 244794645 0.000000e+00 654.0
14 TraesCS3A01G267000 chr3A 92.841 447 23 6 90 535 430123588 430123150 1.120000e-179 640.0
15 TraesCS3A01G267000 chr3A 80.376 479 71 11 1547 2009 405321653 405321182 3.530000e-90 342.0
16 TraesCS3A01G267000 chr3A 81.218 394 53 9 1547 1924 499983204 499983592 7.740000e-77 298.0
17 TraesCS3A01G267000 chr3A 100.000 92 0 0 1 92 322211854 322211763 1.760000e-38 171.0
18 TraesCS3A01G267000 chr3A 97.895 95 1 1 1 95 589232299 589232392 2.950000e-36 163.0
19 TraesCS3A01G267000 chr3A 82.692 104 14 3 3589 3689 285848005 285847903 5.070000e-14 89.8
20 TraesCS3A01G267000 chr3A 86.420 81 8 3 3606 3686 317821795 317821872 6.560000e-13 86.1
21 TraesCS3A01G267000 chr3A 80.000 105 16 3 3589 3689 250278699 250278596 5.110000e-09 73.1
22 TraesCS3A01G267000 chr3A 79.412 102 16 3 3589 3686 258172243 258172343 2.380000e-07 67.6
23 TraesCS3A01G267000 chr3B 86.692 1052 107 18 1381 2421 184345166 184344137 0.000000e+00 1136.0
24 TraesCS3A01G267000 chr3B 86.679 1051 109 16 1381 2421 185944004 185942975 0.000000e+00 1136.0
25 TraesCS3A01G267000 chr3B 88.785 856 81 10 2753 3602 230341630 230342476 0.000000e+00 1035.0
26 TraesCS3A01G267000 chr3B 89.950 597 57 3 1384 1979 104764336 104764930 0.000000e+00 767.0
27 TraesCS3A01G267000 chr3B 83.640 489 49 10 518 1001 230336219 230336681 7.320000e-117 431.0
28 TraesCS3A01G267000 chrUn 88.915 857 85 8 2756 3605 73354959 73354106 0.000000e+00 1048.0
29 TraesCS3A01G267000 chrUn 88.915 857 84 8 2753 3602 73456923 73457775 0.000000e+00 1046.0
30 TraesCS3A01G267000 chrUn 88.953 860 78 11 2753 3602 73544092 73544944 0.000000e+00 1046.0
31 TraesCS3A01G267000 chrUn 84.250 527 53 11 501 1024 73360397 73359898 1.540000e-133 486.0
32 TraesCS3A01G267000 chrUn 83.908 522 56 9 505 1024 73451456 73451951 1.200000e-129 473.0
33 TraesCS3A01G267000 chrUn 82.500 520 60 10 509 1024 73538702 73539194 9.470000e-116 427.0
34 TraesCS3A01G267000 chrUn 84.368 435 56 6 980 1403 73359905 73359472 2.050000e-112 416.0
35 TraesCS3A01G267000 chrUn 83.678 435 59 6 980 1403 73539187 73539620 2.060000e-107 399.0
36 TraesCS3A01G267000 chrUn 83.191 351 45 9 980 1322 73451944 73452288 3.580000e-80 309.0
37 TraesCS3A01G267000 chrUn 88.983 118 10 1 1289 1403 73452295 73452412 3.840000e-30 143.0
38 TraesCS3A01G267000 chr7A 95.529 425 17 2 90 514 62800875 62800453 0.000000e+00 678.0
39 TraesCS3A01G267000 chr7B 79.025 1087 146 47 505 1551 397453873 397452829 0.000000e+00 669.0
40 TraesCS3A01G267000 chr7B 75.136 1102 188 56 505 1552 405972517 405973586 4.370000e-119 438.0
41 TraesCS3A01G267000 chr7B 78.479 618 93 19 1654 2252 212579128 212579724 5.820000e-98 368.0
42 TraesCS3A01G267000 chr7B 78.479 618 93 19 1654 2252 212641551 212642147 5.820000e-98 368.0
43 TraesCS3A01G267000 chr7B 82.323 396 44 12 1547 1924 409384948 409385335 1.650000e-83 320.0
44 TraesCS3A01G267000 chr6A 94.976 418 20 1 90 507 225473867 225474283 0.000000e+00 654.0
45 TraesCS3A01G267000 chr6A 97.917 96 2 0 2 97 204264563 204264468 2.280000e-37 167.0
46 TraesCS3A01G267000 chr4A 93.409 440 27 2 90 528 244119447 244119885 0.000000e+00 651.0
47 TraesCS3A01G267000 chr4A 94.353 425 22 2 90 514 474473869 474473447 0.000000e+00 651.0
48 TraesCS3A01G267000 chr4A 76.442 416 84 12 379 781 199757046 199756632 2.890000e-51 213.0
49 TraesCS3A01G267000 chr3D 78.736 696 108 26 873 1552 470680141 470679470 2.630000e-116 429.0
50 TraesCS3A01G267000 chr2A 82.540 441 68 6 3252 3685 237673892 237674330 2.690000e-101 379.0
51 TraesCS3A01G267000 chr2A 80.831 433 71 8 1547 1968 237641964 237642395 2.750000e-86 329.0
52 TraesCS3A01G267000 chr2A 97.895 95 2 0 1 95 179879185 179879279 8.200000e-37 165.0
53 TraesCS3A01G267000 chr7D 82.487 394 51 8 1547 1924 570140403 570140794 2.750000e-86 329.0
54 TraesCS3A01G267000 chr7D 80.612 98 10 5 2215 2306 181197688 181197594 2.380000e-07 67.6
55 TraesCS3A01G267000 chr7D 81.081 74 9 4 2279 2347 370725389 370725462 2.000000e-03 54.7
56 TraesCS3A01G267000 chr5A 98.925 93 1 0 1 93 692330884 692330792 2.280000e-37 167.0
57 TraesCS3A01G267000 chr1A 95.192 104 3 2 1 103 459995618 459995720 2.950000e-36 163.0
58 TraesCS3A01G267000 chr1A 96.000 100 4 0 1 100 526280091 526279992 2.950000e-36 163.0
59 TraesCS3A01G267000 chr1A 96.000 100 4 0 1 100 526358883 526358784 2.950000e-36 163.0
60 TraesCS3A01G267000 chr1A 96.907 97 2 1 1 97 29953662 29953757 1.060000e-35 161.0
61 TraesCS3A01G267000 chr1B 91.549 71 6 0 2524 2594 319958435 319958505 8.430000e-17 99.0
62 TraesCS3A01G267000 chr1B 88.732 71 8 0 2524 2594 294252463 294252393 1.830000e-13 87.9
63 TraesCS3A01G267000 chr2D 79.245 106 17 2 3585 3685 418521652 418521547 6.610000e-08 69.4
64 TraesCS3A01G267000 chr4D 97.368 38 1 0 2269 2306 284834879 284834916 8.550000e-07 65.8
65 TraesCS3A01G267000 chr6B 92.500 40 3 0 2421 2460 427757418 427757379 1.430000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G267000 chr3A 491785635 491789323 3688 False 6813.000000 6813 100.000000 1 3689 1 chr3A.!!$F5 3688
1 TraesCS3A01G267000 chr3A 480962146 480965320 3174 False 4713.000000 4713 93.475000 506 3689 1 chr3A.!!$F4 3183
2 TraesCS3A01G267000 chr3A 281900770 281901641 871 False 743.000000 743 82.288000 506 1404 1 chr3A.!!$F2 898
3 TraesCS3A01G267000 chr3A 258166492 258167370 878 False 721.000000 721 81.798000 507 1404 1 chr3A.!!$F1 897
4 TraesCS3A01G267000 chr3A 317816000 317816887 887 False 699.000000 699 81.338000 498 1404 1 chr3A.!!$F3 906
5 TraesCS3A01G267000 chr3A 250283570 250284443 873 True 675.000000 675 80.984000 504 1404 1 chr3A.!!$R3 900
6 TraesCS3A01G267000 chr3A 317820902 317821872 970 False 541.050000 996 87.121000 2753 3686 2 chr3A.!!$F10 933
7 TraesCS3A01G267000 chr3A 285847903 285848869 966 True 520.900000 952 84.832000 2759 3689 2 chr3A.!!$R9 930
8 TraesCS3A01G267000 chr3A 250278596 250279558 962 True 505.050000 937 83.368500 2759 3689 2 chr3A.!!$R8 930
9 TraesCS3A01G267000 chr3A 258171377 258172343 966 False 499.300000 931 82.981000 2753 3686 2 chr3A.!!$F9 933
10 TraesCS3A01G267000 chr3B 184344137 184345166 1029 True 1136.000000 1136 86.692000 1381 2421 1 chr3B.!!$R1 1040
11 TraesCS3A01G267000 chr3B 185942975 185944004 1029 True 1136.000000 1136 86.679000 1381 2421 1 chr3B.!!$R2 1040
12 TraesCS3A01G267000 chr3B 230341630 230342476 846 False 1035.000000 1035 88.785000 2753 3602 1 chr3B.!!$F3 849
13 TraesCS3A01G267000 chr3B 104764336 104764930 594 False 767.000000 767 89.950000 1384 1979 1 chr3B.!!$F1 595
14 TraesCS3A01G267000 chrUn 73354106 73354959 853 True 1048.000000 1048 88.915000 2756 3605 1 chrUn.!!$R1 849
15 TraesCS3A01G267000 chrUn 73456923 73457775 852 False 1046.000000 1046 88.915000 2753 3602 1 chrUn.!!$F1 849
16 TraesCS3A01G267000 chrUn 73544092 73544944 852 False 1046.000000 1046 88.953000 2753 3602 1 chrUn.!!$F2 849
17 TraesCS3A01G267000 chrUn 73359472 73360397 925 True 451.000000 486 84.309000 501 1403 2 chrUn.!!$R2 902
18 TraesCS3A01G267000 chrUn 73538702 73539620 918 False 413.000000 427 83.089000 509 1403 2 chrUn.!!$F4 894
19 TraesCS3A01G267000 chrUn 73451456 73452412 956 False 308.333333 473 85.360667 505 1403 3 chrUn.!!$F3 898
20 TraesCS3A01G267000 chr7B 397452829 397453873 1044 True 669.000000 669 79.025000 505 1551 1 chr7B.!!$R1 1046
21 TraesCS3A01G267000 chr7B 405972517 405973586 1069 False 438.000000 438 75.136000 505 1552 1 chr7B.!!$F3 1047
22 TraesCS3A01G267000 chr7B 212579128 212579724 596 False 368.000000 368 78.479000 1654 2252 1 chr7B.!!$F1 598
23 TraesCS3A01G267000 chr7B 212641551 212642147 596 False 368.000000 368 78.479000 1654 2252 1 chr7B.!!$F2 598
24 TraesCS3A01G267000 chr3D 470679470 470680141 671 True 429.000000 429 78.736000 873 1552 1 chr3D.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.111639 TTGGGTAGGGCAGTTTGGAC 59.888 55.000 0.0 0.0 0.00 4.02 F
53 54 0.322546 GGGTAGGGCAGTTTGGACAG 60.323 60.000 0.0 0.0 0.00 3.51 F
54 55 0.322546 GGTAGGGCAGTTTGGACAGG 60.323 60.000 0.0 0.0 0.00 4.00 F
55 56 0.400594 GTAGGGCAGTTTGGACAGGT 59.599 55.000 0.0 0.0 0.00 4.00 F
56 57 0.690762 TAGGGCAGTTTGGACAGGTC 59.309 55.000 0.0 0.0 0.00 3.85 F
99 100 0.940126 GCTTCATCACATGCTACGGG 59.060 55.000 0.0 0.0 0.00 5.28 F
100 101 1.473257 GCTTCATCACATGCTACGGGA 60.473 52.381 0.0 0.0 0.00 5.14 F
106 107 1.552792 TCACATGCTACGGGAATCACA 59.447 47.619 0.0 0.0 0.00 3.58 F
107 108 2.027653 TCACATGCTACGGGAATCACAA 60.028 45.455 0.0 0.0 0.00 3.33 F
2350 2634 1.562008 TCAAATCCGGTCCATAAGGCA 59.438 47.619 0.0 0.0 33.74 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2301 2.729882 GGCAAAGCTATCGGTATGTACG 59.270 50.000 0.00 0.00 0.00 3.67 R
2078 2356 3.603158 TGCGGCTAAGTCTAAATGTGA 57.397 42.857 0.00 0.00 0.00 3.58 R
2135 2413 7.286775 AGTTTCCTGCAAAATTTTAGTGACCTA 59.713 33.333 2.44 0.00 0.00 3.08 R
2148 2426 5.957842 ACATATTCGAGTTTCCTGCAAAA 57.042 34.783 0.00 0.00 0.00 2.44 R
2157 2435 8.561738 AGTAACCATGAAACATATTCGAGTTT 57.438 30.769 0.00 0.59 40.38 2.66 R
2313 2596 7.254556 CCGGATTTGATCATATGTATGAATCGG 60.255 40.741 0.00 7.89 44.96 4.18 R
2314 2597 7.278646 ACCGGATTTGATCATATGTATGAATCG 59.721 37.037 9.46 1.82 44.96 3.34 R
2330 2614 1.562008 TGCCTTATGGACCGGATTTGA 59.438 47.619 9.46 0.00 34.57 2.69 R
2461 2746 1.334779 GCAAAGAGCAGCAGTCAACTG 60.335 52.381 5.77 5.77 44.30 3.16 R
3242 3536 0.681243 GTTGGGGTTGAGGAGGCATC 60.681 60.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.834068 CGATTGAAAGGTGATTTCTTCTAGA 57.166 36.000 0.00 0.00 46.34 2.43
25 26 7.904094 CGATTGAAAGGTGATTTCTTCTAGAG 58.096 38.462 0.00 0.00 46.34 2.43
26 27 7.761704 CGATTGAAAGGTGATTTCTTCTAGAGA 59.238 37.037 0.00 0.00 46.34 3.10
27 28 9.612066 GATTGAAAGGTGATTTCTTCTAGAGAT 57.388 33.333 0.00 0.00 46.34 2.75
28 29 8.783833 TTGAAAGGTGATTTCTTCTAGAGATG 57.216 34.615 0.00 0.00 46.34 2.90
29 30 7.911651 TGAAAGGTGATTTCTTCTAGAGATGT 58.088 34.615 0.00 0.00 46.34 3.06
30 31 8.037758 TGAAAGGTGATTTCTTCTAGAGATGTC 58.962 37.037 0.00 0.00 46.34 3.06
31 32 6.478512 AGGTGATTTCTTCTAGAGATGTCC 57.521 41.667 0.00 0.00 33.49 4.02
32 33 6.201591 AGGTGATTTCTTCTAGAGATGTCCT 58.798 40.000 0.00 0.00 33.49 3.85
33 34 6.671779 AGGTGATTTCTTCTAGAGATGTCCTT 59.328 38.462 0.00 0.00 33.49 3.36
34 35 6.760770 GGTGATTTCTTCTAGAGATGTCCTTG 59.239 42.308 0.00 0.00 33.49 3.61
35 36 6.760770 GTGATTTCTTCTAGAGATGTCCTTGG 59.239 42.308 0.00 0.00 33.49 3.61
36 37 5.683876 TTTCTTCTAGAGATGTCCTTGGG 57.316 43.478 0.00 0.00 33.49 4.12
37 38 4.338795 TCTTCTAGAGATGTCCTTGGGT 57.661 45.455 0.00 0.00 0.00 4.51
38 39 5.467668 TCTTCTAGAGATGTCCTTGGGTA 57.532 43.478 0.00 0.00 0.00 3.69
39 40 5.450453 TCTTCTAGAGATGTCCTTGGGTAG 58.550 45.833 0.00 0.00 0.00 3.18
40 41 4.186077 TCTAGAGATGTCCTTGGGTAGG 57.814 50.000 0.00 0.00 46.27 3.18
41 42 2.182516 AGAGATGTCCTTGGGTAGGG 57.817 55.000 0.00 0.00 44.86 3.53
46 47 4.681624 TCCTTGGGTAGGGCAGTT 57.318 55.556 0.00 0.00 44.86 3.16
47 48 2.877150 TCCTTGGGTAGGGCAGTTT 58.123 52.632 0.00 0.00 44.86 2.66
48 49 0.404040 TCCTTGGGTAGGGCAGTTTG 59.596 55.000 0.00 0.00 44.86 2.93
49 50 0.611896 CCTTGGGTAGGGCAGTTTGG 60.612 60.000 0.00 0.00 40.67 3.28
50 51 0.404040 CTTGGGTAGGGCAGTTTGGA 59.596 55.000 0.00 0.00 0.00 3.53
51 52 0.111639 TTGGGTAGGGCAGTTTGGAC 59.888 55.000 0.00 0.00 0.00 4.02
52 53 1.063070 TGGGTAGGGCAGTTTGGACA 61.063 55.000 0.00 0.00 0.00 4.02
53 54 0.322546 GGGTAGGGCAGTTTGGACAG 60.323 60.000 0.00 0.00 0.00 3.51
54 55 0.322546 GGTAGGGCAGTTTGGACAGG 60.323 60.000 0.00 0.00 0.00 4.00
55 56 0.400594 GTAGGGCAGTTTGGACAGGT 59.599 55.000 0.00 0.00 0.00 4.00
56 57 0.690762 TAGGGCAGTTTGGACAGGTC 59.309 55.000 0.00 0.00 0.00 3.85
70 71 4.831613 GGTCCATGACCCTACCCT 57.168 61.111 1.68 0.00 46.19 4.34
71 72 3.961588 GGTCCATGACCCTACCCTA 57.038 57.895 1.68 0.00 46.19 3.53
72 73 1.718280 GGTCCATGACCCTACCCTAG 58.282 60.000 1.68 0.00 46.19 3.02
73 74 1.718280 GTCCATGACCCTACCCTAGG 58.282 60.000 0.06 0.06 45.81 3.02
74 75 1.062352 GTCCATGACCCTACCCTAGGT 60.062 57.143 8.29 0.00 44.73 3.08
75 76 2.178544 GTCCATGACCCTACCCTAGGTA 59.821 54.545 8.29 0.00 44.73 3.08
76 77 2.178544 TCCATGACCCTACCCTAGGTAC 59.821 54.545 8.29 0.00 44.73 3.34
77 78 2.090943 CCATGACCCTACCCTAGGTACA 60.091 54.545 8.29 0.00 44.73 2.90
78 79 3.439558 CCATGACCCTACCCTAGGTACAT 60.440 52.174 8.29 0.00 44.73 2.29
79 80 4.202749 CCATGACCCTACCCTAGGTACATA 60.203 50.000 8.29 0.00 44.73 2.29
80 81 4.736611 TGACCCTACCCTAGGTACATAG 57.263 50.000 8.29 7.59 44.73 2.23
81 82 3.181425 TGACCCTACCCTAGGTACATAGC 60.181 52.174 9.07 0.00 44.73 2.97
82 83 3.069774 ACCCTACCCTAGGTACATAGCT 58.930 50.000 9.07 0.00 44.73 3.32
83 84 3.470154 ACCCTACCCTAGGTACATAGCTT 59.530 47.826 9.07 0.75 44.73 3.74
84 85 4.087907 CCCTACCCTAGGTACATAGCTTC 58.912 52.174 9.07 0.00 44.73 3.86
85 86 4.448787 CCCTACCCTAGGTACATAGCTTCA 60.449 50.000 9.07 0.00 44.73 3.02
86 87 5.334421 CCTACCCTAGGTACATAGCTTCAT 58.666 45.833 9.07 0.00 41.18 2.57
87 88 5.419471 CCTACCCTAGGTACATAGCTTCATC 59.581 48.000 9.07 0.00 41.18 2.92
88 89 4.816126 ACCCTAGGTACATAGCTTCATCA 58.184 43.478 9.07 0.00 32.11 3.07
89 90 4.589374 ACCCTAGGTACATAGCTTCATCAC 59.411 45.833 9.07 0.00 32.11 3.06
90 91 4.588951 CCCTAGGTACATAGCTTCATCACA 59.411 45.833 9.07 0.00 35.39 3.58
91 92 5.247110 CCCTAGGTACATAGCTTCATCACAT 59.753 44.000 9.07 0.00 35.39 3.21
92 93 6.162079 CCTAGGTACATAGCTTCATCACATG 58.838 44.000 9.07 0.00 35.39 3.21
93 94 4.384056 AGGTACATAGCTTCATCACATGC 58.616 43.478 0.00 0.00 0.00 4.06
94 95 4.102210 AGGTACATAGCTTCATCACATGCT 59.898 41.667 0.00 0.00 39.30 3.79
95 96 5.305386 AGGTACATAGCTTCATCACATGCTA 59.695 40.000 0.00 0.00 41.40 3.49
96 97 5.406780 GGTACATAGCTTCATCACATGCTAC 59.593 44.000 0.00 0.00 40.23 3.58
97 98 4.053983 ACATAGCTTCATCACATGCTACG 58.946 43.478 0.00 0.00 40.23 3.51
98 99 1.945387 AGCTTCATCACATGCTACGG 58.055 50.000 0.00 0.00 33.64 4.02
99 100 0.940126 GCTTCATCACATGCTACGGG 59.060 55.000 0.00 0.00 0.00 5.28
100 101 1.473257 GCTTCATCACATGCTACGGGA 60.473 52.381 0.00 0.00 0.00 5.14
101 102 2.905075 CTTCATCACATGCTACGGGAA 58.095 47.619 0.00 0.00 0.00 3.97
102 103 3.470709 CTTCATCACATGCTACGGGAAT 58.529 45.455 0.00 0.00 0.00 3.01
103 104 3.111853 TCATCACATGCTACGGGAATC 57.888 47.619 0.00 0.00 0.00 2.52
104 105 2.433970 TCATCACATGCTACGGGAATCA 59.566 45.455 0.00 0.00 0.00 2.57
105 106 2.309528 TCACATGCTACGGGAATCAC 57.690 50.000 0.00 0.00 0.00 3.06
106 107 1.552792 TCACATGCTACGGGAATCACA 59.447 47.619 0.00 0.00 0.00 3.58
107 108 2.027653 TCACATGCTACGGGAATCACAA 60.028 45.455 0.00 0.00 0.00 3.33
108 109 2.746904 CACATGCTACGGGAATCACAAA 59.253 45.455 0.00 0.00 0.00 2.83
109 110 2.747446 ACATGCTACGGGAATCACAAAC 59.253 45.455 0.00 0.00 0.00 2.93
110 111 2.851263 TGCTACGGGAATCACAAACT 57.149 45.000 0.00 0.00 0.00 2.66
111 112 3.134574 TGCTACGGGAATCACAAACTT 57.865 42.857 0.00 0.00 0.00 2.66
112 113 3.482436 TGCTACGGGAATCACAAACTTT 58.518 40.909 0.00 0.00 0.00 2.66
113 114 4.643463 TGCTACGGGAATCACAAACTTTA 58.357 39.130 0.00 0.00 0.00 1.85
114 115 5.064558 TGCTACGGGAATCACAAACTTTAA 58.935 37.500 0.00 0.00 0.00 1.52
115 116 5.049267 TGCTACGGGAATCACAAACTTTAAC 60.049 40.000 0.00 0.00 0.00 2.01
116 117 5.049267 GCTACGGGAATCACAAACTTTAACA 60.049 40.000 0.00 0.00 0.00 2.41
117 118 5.177725 ACGGGAATCACAAACTTTAACAC 57.822 39.130 0.00 0.00 0.00 3.32
118 119 4.641094 ACGGGAATCACAAACTTTAACACA 59.359 37.500 0.00 0.00 0.00 3.72
119 120 5.125739 ACGGGAATCACAAACTTTAACACAA 59.874 36.000 0.00 0.00 0.00 3.33
120 121 5.685511 CGGGAATCACAAACTTTAACACAAG 59.314 40.000 0.00 0.00 0.00 3.16
121 122 6.569780 GGGAATCACAAACTTTAACACAAGT 58.430 36.000 0.00 0.00 38.74 3.16
122 123 7.467539 CGGGAATCACAAACTTTAACACAAGTA 60.468 37.037 0.00 0.00 35.87 2.24
123 124 8.357402 GGGAATCACAAACTTTAACACAAGTAT 58.643 33.333 0.00 0.00 35.87 2.12
124 125 9.744468 GGAATCACAAACTTTAACACAAGTATT 57.256 29.630 0.00 0.00 35.87 1.89
128 129 9.997482 TCACAAACTTTAACACAAGTATTTCTC 57.003 29.630 0.00 0.00 35.87 2.87
129 130 9.781834 CACAAACTTTAACACAAGTATTTCTCA 57.218 29.630 0.00 0.00 35.87 3.27
139 140 8.856490 ACACAAGTATTTCTCAAATTCACAAC 57.144 30.769 0.00 0.00 32.38 3.32
140 141 8.686334 ACACAAGTATTTCTCAAATTCACAACT 58.314 29.630 0.00 0.00 32.38 3.16
145 146 9.778741 AGTATTTCTCAAATTCACAACTACTCA 57.221 29.630 0.00 0.00 32.38 3.41
148 149 8.506168 TTTCTCAAATTCACAACTACTCAACT 57.494 30.769 0.00 0.00 0.00 3.16
149 150 9.607988 TTTCTCAAATTCACAACTACTCAACTA 57.392 29.630 0.00 0.00 0.00 2.24
150 151 8.818141 TCTCAAATTCACAACTACTCAACTAG 57.182 34.615 0.00 0.00 0.00 2.57
151 152 7.385205 TCTCAAATTCACAACTACTCAACTAGC 59.615 37.037 0.00 0.00 0.00 3.42
152 153 6.989759 TCAAATTCACAACTACTCAACTAGCA 59.010 34.615 0.00 0.00 0.00 3.49
153 154 7.661437 TCAAATTCACAACTACTCAACTAGCAT 59.339 33.333 0.00 0.00 0.00 3.79
154 155 6.974932 ATTCACAACTACTCAACTAGCATG 57.025 37.500 0.00 0.00 0.00 4.06
155 156 5.722021 TCACAACTACTCAACTAGCATGA 57.278 39.130 0.00 0.00 0.00 3.07
156 157 5.470368 TCACAACTACTCAACTAGCATGAC 58.530 41.667 0.00 0.00 0.00 3.06
157 158 5.243954 TCACAACTACTCAACTAGCATGACT 59.756 40.000 0.00 0.00 0.00 3.41
158 159 5.574830 CACAACTACTCAACTAGCATGACTC 59.425 44.000 0.00 0.00 0.00 3.36
159 160 5.478679 ACAACTACTCAACTAGCATGACTCT 59.521 40.000 0.00 0.00 0.00 3.24
160 161 6.659668 ACAACTACTCAACTAGCATGACTCTA 59.340 38.462 0.00 0.00 0.00 2.43
161 162 7.176865 ACAACTACTCAACTAGCATGACTCTAA 59.823 37.037 0.00 0.00 0.00 2.10
162 163 7.889873 ACTACTCAACTAGCATGACTCTAAT 57.110 36.000 0.00 0.00 0.00 1.73
163 164 8.982091 ACTACTCAACTAGCATGACTCTAATA 57.018 34.615 0.00 0.00 0.00 0.98
164 165 9.581289 ACTACTCAACTAGCATGACTCTAATAT 57.419 33.333 0.00 0.00 0.00 1.28
166 167 8.470657 ACTCAACTAGCATGACTCTAATATCA 57.529 34.615 0.00 0.00 0.00 2.15
167 168 8.575589 ACTCAACTAGCATGACTCTAATATCAG 58.424 37.037 0.00 0.00 0.00 2.90
168 169 7.374272 TCAACTAGCATGACTCTAATATCAGC 58.626 38.462 0.00 0.00 0.00 4.26
169 170 6.907853 ACTAGCATGACTCTAATATCAGCA 57.092 37.500 0.00 0.00 0.00 4.41
170 171 7.479352 ACTAGCATGACTCTAATATCAGCAT 57.521 36.000 0.00 0.00 0.00 3.79
171 172 7.546358 ACTAGCATGACTCTAATATCAGCATC 58.454 38.462 0.00 0.00 0.00 3.91
172 173 6.608539 AGCATGACTCTAATATCAGCATCT 57.391 37.500 0.00 0.00 0.00 2.90
173 174 6.632909 AGCATGACTCTAATATCAGCATCTC 58.367 40.000 0.00 0.00 0.00 2.75
174 175 5.811613 GCATGACTCTAATATCAGCATCTCC 59.188 44.000 0.00 0.00 0.00 3.71
175 176 6.573876 GCATGACTCTAATATCAGCATCTCCA 60.574 42.308 0.00 0.00 0.00 3.86
176 177 7.557724 CATGACTCTAATATCAGCATCTCCAT 58.442 38.462 0.00 0.00 0.00 3.41
177 178 8.693625 CATGACTCTAATATCAGCATCTCCATA 58.306 37.037 0.00 0.00 0.00 2.74
178 179 8.835550 TGACTCTAATATCAGCATCTCCATAT 57.164 34.615 0.00 0.00 0.00 1.78
179 180 8.911965 TGACTCTAATATCAGCATCTCCATATC 58.088 37.037 0.00 0.00 0.00 1.63
180 181 9.135189 GACTCTAATATCAGCATCTCCATATCT 57.865 37.037 0.00 0.00 0.00 1.98
181 182 9.135189 ACTCTAATATCAGCATCTCCATATCTC 57.865 37.037 0.00 0.00 0.00 2.75
182 183 9.134055 CTCTAATATCAGCATCTCCATATCTCA 57.866 37.037 0.00 0.00 0.00 3.27
183 184 9.484806 TCTAATATCAGCATCTCCATATCTCAA 57.515 33.333 0.00 0.00 0.00 3.02
186 187 8.789825 ATATCAGCATCTCCATATCTCAAAAC 57.210 34.615 0.00 0.00 0.00 2.43
187 188 5.993055 TCAGCATCTCCATATCTCAAAACA 58.007 37.500 0.00 0.00 0.00 2.83
188 189 6.417258 TCAGCATCTCCATATCTCAAAACAA 58.583 36.000 0.00 0.00 0.00 2.83
189 190 7.058525 TCAGCATCTCCATATCTCAAAACAAT 58.941 34.615 0.00 0.00 0.00 2.71
190 191 7.558807 TCAGCATCTCCATATCTCAAAACAATT 59.441 33.333 0.00 0.00 0.00 2.32
191 192 8.843262 CAGCATCTCCATATCTCAAAACAATTA 58.157 33.333 0.00 0.00 0.00 1.40
192 193 9.584008 AGCATCTCCATATCTCAAAACAATTAT 57.416 29.630 0.00 0.00 0.00 1.28
193 194 9.837525 GCATCTCCATATCTCAAAACAATTATC 57.162 33.333 0.00 0.00 0.00 1.75
217 218 9.624373 ATCAAGTATCAAACTTCTCATAGCATT 57.376 29.630 0.00 0.00 45.64 3.56
218 219 9.102757 TCAAGTATCAAACTTCTCATAGCATTC 57.897 33.333 0.00 0.00 45.64 2.67
219 220 8.886719 CAAGTATCAAACTTCTCATAGCATTCA 58.113 33.333 0.00 0.00 45.64 2.57
220 221 9.453572 AAGTATCAAACTTCTCATAGCATTCAA 57.546 29.630 0.00 0.00 45.64 2.69
221 222 8.887717 AGTATCAAACTTCTCATAGCATTCAAC 58.112 33.333 0.00 0.00 33.35 3.18
222 223 7.692460 ATCAAACTTCTCATAGCATTCAACA 57.308 32.000 0.00 0.00 0.00 3.33
223 224 6.902341 TCAAACTTCTCATAGCATTCAACAC 58.098 36.000 0.00 0.00 0.00 3.32
224 225 6.486320 TCAAACTTCTCATAGCATTCAACACA 59.514 34.615 0.00 0.00 0.00 3.72
225 226 5.869753 ACTTCTCATAGCATTCAACACAC 57.130 39.130 0.00 0.00 0.00 3.82
226 227 5.555017 ACTTCTCATAGCATTCAACACACT 58.445 37.500 0.00 0.00 0.00 3.55
227 228 5.641209 ACTTCTCATAGCATTCAACACACTC 59.359 40.000 0.00 0.00 0.00 3.51
228 229 5.151297 TCTCATAGCATTCAACACACTCA 57.849 39.130 0.00 0.00 0.00 3.41
229 230 5.737860 TCTCATAGCATTCAACACACTCAT 58.262 37.500 0.00 0.00 0.00 2.90
230 231 6.877236 TCTCATAGCATTCAACACACTCATA 58.123 36.000 0.00 0.00 0.00 2.15
231 232 7.330262 TCTCATAGCATTCAACACACTCATAA 58.670 34.615 0.00 0.00 0.00 1.90
232 233 7.493645 TCTCATAGCATTCAACACACTCATAAG 59.506 37.037 0.00 0.00 0.00 1.73
233 234 7.330262 TCATAGCATTCAACACACTCATAAGA 58.670 34.615 0.00 0.00 0.00 2.10
235 236 5.798132 AGCATTCAACACACTCATAAGAGA 58.202 37.500 1.17 0.00 44.98 3.10
236 237 6.233434 AGCATTCAACACACTCATAAGAGAA 58.767 36.000 1.17 0.00 44.98 2.87
237 238 6.883217 AGCATTCAACACACTCATAAGAGAAT 59.117 34.615 1.17 0.00 44.98 2.40
238 239 7.392673 AGCATTCAACACACTCATAAGAGAATT 59.607 33.333 1.17 0.00 44.98 2.17
239 240 8.025445 GCATTCAACACACTCATAAGAGAATTT 58.975 33.333 1.17 0.00 44.98 1.82
240 241 9.903682 CATTCAACACACTCATAAGAGAATTTT 57.096 29.630 1.17 0.00 44.98 1.82
309 310 9.905713 AAATTACCATGCTATTTAAGACTCTCA 57.094 29.630 0.00 0.00 0.00 3.27
310 311 9.905713 AATTACCATGCTATTTAAGACTCTCAA 57.094 29.630 0.00 0.00 0.00 3.02
311 312 9.905713 ATTACCATGCTATTTAAGACTCTCAAA 57.094 29.630 0.00 0.00 0.00 2.69
312 313 9.733556 TTACCATGCTATTTAAGACTCTCAAAA 57.266 29.630 0.00 0.00 0.00 2.44
313 314 8.814038 ACCATGCTATTTAAGACTCTCAAAAT 57.186 30.769 0.00 5.23 0.00 1.82
314 315 9.905713 ACCATGCTATTTAAGACTCTCAAAATA 57.094 29.630 0.00 6.46 0.00 1.40
327 328 9.377312 AGACTCTCAAAATAATCTAAGTGAAGC 57.623 33.333 0.00 0.00 0.00 3.86
328 329 9.155975 GACTCTCAAAATAATCTAAGTGAAGCA 57.844 33.333 0.00 0.00 0.00 3.91
329 330 9.678260 ACTCTCAAAATAATCTAAGTGAAGCAT 57.322 29.630 0.00 0.00 0.00 3.79
330 331 9.932699 CTCTCAAAATAATCTAAGTGAAGCATG 57.067 33.333 0.00 0.00 0.00 4.06
331 332 9.671279 TCTCAAAATAATCTAAGTGAAGCATGA 57.329 29.630 0.00 0.00 0.00 3.07
332 333 9.932699 CTCAAAATAATCTAAGTGAAGCATGAG 57.067 33.333 0.00 0.00 0.00 2.90
333 334 9.671279 TCAAAATAATCTAAGTGAAGCATGAGA 57.329 29.630 0.00 0.00 0.00 3.27
334 335 9.932699 CAAAATAATCTAAGTGAAGCATGAGAG 57.067 33.333 0.00 0.00 0.00 3.20
335 336 9.896645 AAAATAATCTAAGTGAAGCATGAGAGA 57.103 29.630 0.00 0.00 0.00 3.10
337 338 9.709495 AATAATCTAAGTGAAGCATGAGAGATC 57.291 33.333 0.00 0.00 0.00 2.75
338 339 6.728089 ATCTAAGTGAAGCATGAGAGATCA 57.272 37.500 0.00 0.00 0.00 2.92
339 340 6.535963 TCTAAGTGAAGCATGAGAGATCAA 57.464 37.500 0.00 0.00 0.00 2.57
340 341 7.122138 TCTAAGTGAAGCATGAGAGATCAAT 57.878 36.000 0.00 0.00 0.00 2.57
341 342 7.563020 TCTAAGTGAAGCATGAGAGATCAATT 58.437 34.615 0.00 1.11 33.53 2.32
342 343 6.438259 AAGTGAAGCATGAGAGATCAATTG 57.562 37.500 0.00 0.00 28.49 2.32
343 344 5.498393 AGTGAAGCATGAGAGATCAATTGT 58.502 37.500 5.13 0.00 0.00 2.71
344 345 5.944599 AGTGAAGCATGAGAGATCAATTGTT 59.055 36.000 5.13 0.00 0.00 2.83
345 346 6.433404 AGTGAAGCATGAGAGATCAATTGTTT 59.567 34.615 5.13 0.00 0.00 2.83
346 347 6.746364 GTGAAGCATGAGAGATCAATTGTTTC 59.254 38.462 5.13 4.34 0.00 2.78
347 348 6.657966 TGAAGCATGAGAGATCAATTGTTTCT 59.342 34.615 5.13 9.12 0.00 2.52
348 349 7.825761 TGAAGCATGAGAGATCAATTGTTTCTA 59.174 33.333 5.13 0.00 0.00 2.10
349 350 8.749026 AAGCATGAGAGATCAATTGTTTCTAT 57.251 30.769 5.13 6.66 0.00 1.98
350 351 9.842775 AAGCATGAGAGATCAATTGTTTCTATA 57.157 29.630 5.13 1.68 0.00 1.31
351 352 9.842775 AGCATGAGAGATCAATTGTTTCTATAA 57.157 29.630 5.13 0.88 0.00 0.98
370 371 8.138365 TCTATAAAACAAATCTACCATCGTGC 57.862 34.615 0.00 0.00 0.00 5.34
371 372 7.985184 TCTATAAAACAAATCTACCATCGTGCT 59.015 33.333 0.00 0.00 0.00 4.40
372 373 4.946784 AAACAAATCTACCATCGTGCTC 57.053 40.909 0.00 0.00 0.00 4.26
373 374 3.895232 ACAAATCTACCATCGTGCTCT 57.105 42.857 0.00 0.00 0.00 4.09
374 375 5.339008 AACAAATCTACCATCGTGCTCTA 57.661 39.130 0.00 0.00 0.00 2.43
375 376 5.339008 ACAAATCTACCATCGTGCTCTAA 57.661 39.130 0.00 0.00 0.00 2.10
376 377 5.730550 ACAAATCTACCATCGTGCTCTAAA 58.269 37.500 0.00 0.00 0.00 1.85
377 378 6.170506 ACAAATCTACCATCGTGCTCTAAAA 58.829 36.000 0.00 0.00 0.00 1.52
378 379 6.313905 ACAAATCTACCATCGTGCTCTAAAAG 59.686 38.462 0.00 0.00 0.00 2.27
379 380 5.854010 ATCTACCATCGTGCTCTAAAAGA 57.146 39.130 0.00 0.00 0.00 2.52
380 381 5.854010 TCTACCATCGTGCTCTAAAAGAT 57.146 39.130 0.00 0.00 0.00 2.40
381 382 6.954487 TCTACCATCGTGCTCTAAAAGATA 57.046 37.500 0.00 0.00 0.00 1.98
382 383 7.526142 TCTACCATCGTGCTCTAAAAGATAT 57.474 36.000 0.00 0.00 0.00 1.63
383 384 8.631480 TCTACCATCGTGCTCTAAAAGATATA 57.369 34.615 0.00 0.00 0.00 0.86
384 385 9.074576 TCTACCATCGTGCTCTAAAAGATATAA 57.925 33.333 0.00 0.00 0.00 0.98
385 386 9.692749 CTACCATCGTGCTCTAAAAGATATAAA 57.307 33.333 0.00 0.00 0.00 1.40
407 408 7.452880 AAATAAAGCACTAGAGCAAATGACA 57.547 32.000 14.80 0.00 36.85 3.58
408 409 7.452880 AATAAAGCACTAGAGCAAATGACAA 57.547 32.000 14.80 0.00 36.85 3.18
409 410 5.772825 AAAGCACTAGAGCAAATGACAAA 57.227 34.783 14.80 0.00 36.85 2.83
410 411 4.756084 AGCACTAGAGCAAATGACAAAC 57.244 40.909 14.80 0.00 36.85 2.93
411 412 4.392940 AGCACTAGAGCAAATGACAAACT 58.607 39.130 14.80 0.00 36.85 2.66
412 413 5.551233 AGCACTAGAGCAAATGACAAACTA 58.449 37.500 14.80 0.00 36.85 2.24
413 414 5.409826 AGCACTAGAGCAAATGACAAACTAC 59.590 40.000 14.80 0.00 36.85 2.73
414 415 5.409826 GCACTAGAGCAAATGACAAACTACT 59.590 40.000 7.33 0.00 0.00 2.57
415 416 6.401581 GCACTAGAGCAAATGACAAACTACTC 60.402 42.308 7.33 0.00 0.00 2.59
416 417 6.091441 CACTAGAGCAAATGACAAACTACTCC 59.909 42.308 0.00 0.00 0.00 3.85
417 418 3.997021 AGAGCAAATGACAAACTACTCCG 59.003 43.478 0.00 0.00 0.00 4.63
418 419 3.994392 GAGCAAATGACAAACTACTCCGA 59.006 43.478 0.00 0.00 0.00 4.55
419 420 3.997021 AGCAAATGACAAACTACTCCGAG 59.003 43.478 0.00 0.00 0.00 4.63
420 421 3.994392 GCAAATGACAAACTACTCCGAGA 59.006 43.478 1.33 0.00 0.00 4.04
421 422 4.092091 GCAAATGACAAACTACTCCGAGAG 59.908 45.833 1.33 0.00 35.52 3.20
422 423 5.470368 CAAATGACAAACTACTCCGAGAGA 58.530 41.667 1.33 0.00 33.32 3.10
423 424 5.923733 AATGACAAACTACTCCGAGAGAT 57.076 39.130 1.33 0.00 33.32 2.75
424 425 7.258441 CAAATGACAAACTACTCCGAGAGATA 58.742 38.462 1.33 0.00 33.32 1.98
425 426 7.589958 AATGACAAACTACTCCGAGAGATAT 57.410 36.000 1.33 0.00 33.32 1.63
426 427 8.693120 AATGACAAACTACTCCGAGAGATATA 57.307 34.615 1.33 0.00 33.32 0.86
427 428 8.693120 ATGACAAACTACTCCGAGAGATATAA 57.307 34.615 1.33 0.00 33.32 0.98
428 429 8.155821 TGACAAACTACTCCGAGAGATATAAG 57.844 38.462 1.33 1.34 33.32 1.73
429 430 7.774157 TGACAAACTACTCCGAGAGATATAAGT 59.226 37.037 1.33 0.00 33.32 2.24
430 431 7.932335 ACAAACTACTCCGAGAGATATAAGTG 58.068 38.462 1.33 1.27 33.32 3.16
431 432 7.774157 ACAAACTACTCCGAGAGATATAAGTGA 59.226 37.037 1.33 0.00 33.32 3.41
432 433 8.622157 CAAACTACTCCGAGAGATATAAGTGAA 58.378 37.037 1.33 0.00 33.32 3.18
433 434 7.972832 ACTACTCCGAGAGATATAAGTGAAG 57.027 40.000 1.33 0.00 33.32 3.02
434 435 7.737869 ACTACTCCGAGAGATATAAGTGAAGA 58.262 38.462 1.33 0.00 33.32 2.87
435 436 8.380099 ACTACTCCGAGAGATATAAGTGAAGAT 58.620 37.037 1.33 0.00 33.32 2.40
436 437 7.681939 ACTCCGAGAGATATAAGTGAAGATC 57.318 40.000 1.33 0.00 33.32 2.75
437 438 7.227873 ACTCCGAGAGATATAAGTGAAGATCA 58.772 38.462 1.33 0.00 33.32 2.92
438 439 7.721842 ACTCCGAGAGATATAAGTGAAGATCAA 59.278 37.037 1.33 0.00 33.32 2.57
439 440 8.642935 TCCGAGAGATATAAGTGAAGATCAAT 57.357 34.615 0.00 0.00 0.00 2.57
440 441 9.740710 TCCGAGAGATATAAGTGAAGATCAATA 57.259 33.333 0.00 0.00 0.00 1.90
467 468 9.982651 AGTAGTCGAATAATTATGCAACTATGT 57.017 29.630 7.40 0.00 0.00 2.29
469 470 8.887036 AGTCGAATAATTATGCAACTATGTGA 57.113 30.769 4.29 0.00 0.00 3.58
470 471 9.325198 AGTCGAATAATTATGCAACTATGTGAA 57.675 29.630 4.29 0.00 0.00 3.18
471 472 9.586150 GTCGAATAATTATGCAACTATGTGAAG 57.414 33.333 4.29 0.00 0.00 3.02
472 473 9.541143 TCGAATAATTATGCAACTATGTGAAGA 57.459 29.630 4.29 0.00 0.00 2.87
473 474 9.586150 CGAATAATTATGCAACTATGTGAAGAC 57.414 33.333 4.29 0.00 0.00 3.01
481 482 8.879342 ATGCAACTATGTGAAGACTCTATAAC 57.121 34.615 0.00 0.00 0.00 1.89
482 483 7.836842 TGCAACTATGTGAAGACTCTATAACA 58.163 34.615 0.00 0.00 0.00 2.41
483 484 8.478066 TGCAACTATGTGAAGACTCTATAACAT 58.522 33.333 0.00 6.48 33.18 2.71
484 485 9.319143 GCAACTATGTGAAGACTCTATAACATT 57.681 33.333 6.53 0.00 31.19 2.71
614 615 7.915293 TTTAACGGCTGAGATTAAAAGATGA 57.085 32.000 0.00 0.00 0.00 2.92
631 632 8.757817 AAAAGATGAAAACGTTACGTAGAAAC 57.242 30.769 11.79 2.07 39.99 2.78
752 823 6.899393 ACATGTCAAGGAAGCAAAAATAGA 57.101 33.333 0.00 0.00 0.00 1.98
761 832 6.438763 AGGAAGCAAAAATAGAAGTCAAACG 58.561 36.000 0.00 0.00 0.00 3.60
766 837 8.556517 AGCAAAAATAGAAGTCAAACGTAAAC 57.443 30.769 0.00 0.00 0.00 2.01
966 1078 3.550820 TGTAGAAGCACACACACCAAAT 58.449 40.909 0.00 0.00 0.00 2.32
978 1090 7.308589 GCACACACACCAAATAATTAGAAGTCT 60.309 37.037 0.00 0.00 0.00 3.24
1010 1173 2.247790 GCTTGAAGATGCCACACGT 58.752 52.632 0.00 0.00 0.00 4.49
1198 1408 9.315363 TCAGGTTTGGGTAATTGTTATTAACAT 57.685 29.630 9.95 0.00 41.79 2.71
1285 1537 4.769488 TCAAGGCAAAACACTATGGCATAA 59.231 37.500 8.79 0.00 43.93 1.90
1287 1539 5.329035 AGGCAAAACACTATGGCATAAAG 57.671 39.130 8.79 6.49 43.93 1.85
1348 1606 7.305474 AGAACATTCAAGTAAAAGTAATGCGG 58.695 34.615 0.00 0.00 32.10 5.69
1381 1639 3.104512 AGTCAATCCTACCACCGATGAA 58.895 45.455 0.00 0.00 0.00 2.57
1477 1736 9.113838 CTGTCAGATTAGGCAACAATTACTAAT 57.886 33.333 0.00 0.00 38.46 1.73
1507 1770 4.102524 TGATTGTACAGGGTGAAACAGTCT 59.897 41.667 0.00 0.00 39.98 3.24
1798 2061 9.732130 ACTCTAAAACAGATTGATAGCTTTCTT 57.268 29.630 5.74 0.00 31.13 2.52
1938 2213 5.699143 ACTTTGCCAAATCTATATGAGGCT 58.301 37.500 0.00 0.00 42.46 4.58
1948 2224 8.877779 CAAATCTATATGAGGCTAGCACAATAC 58.122 37.037 18.24 0.00 0.00 1.89
2025 2301 3.870633 ATCACCGACCTTTCTACTGTC 57.129 47.619 0.00 0.00 0.00 3.51
2154 2432 8.580720 TGCTTATTAGGTCACTAAAATTTTGCA 58.419 29.630 13.76 6.24 42.14 4.08
2157 2435 7.775053 ATTAGGTCACTAAAATTTTGCAGGA 57.225 32.000 13.76 3.44 42.14 3.86
2216 2495 6.039270 TGACCACAAGTTACCTGAGAAAATTG 59.961 38.462 6.27 6.27 36.88 2.32
2267 2550 7.307131 ACCAAAATTGATGAAGAAGGTGAAT 57.693 32.000 0.00 0.00 0.00 2.57
2341 2625 7.905604 TTCATACATATGATCAAATCCGGTC 57.094 36.000 10.38 0.00 41.86 4.79
2350 2634 1.562008 TCAAATCCGGTCCATAAGGCA 59.438 47.619 0.00 0.00 33.74 4.75
2460 2745 1.039068 ATGAGGAGACCAGCATCTCG 58.961 55.000 6.58 0.00 45.27 4.04
2461 2746 1.067250 GAGGAGACCAGCATCTCGC 59.933 63.158 6.58 0.00 45.27 5.03
2469 2754 0.390866 CCAGCATCTCGCAGTTGACT 60.391 55.000 0.00 0.00 46.13 3.41
2532 2817 2.306805 TCATCAGCAAGTGTTCCCTCAT 59.693 45.455 0.00 0.00 0.00 2.90
2549 2834 0.399091 CATAGCCTCCTCCACTGGGA 60.399 60.000 0.00 0.00 42.29 4.37
2553 2838 1.213296 GCCTCCTCCACTGGGATAAA 58.787 55.000 0.00 0.00 43.91 1.40
2584 2869 2.374830 CTGCCATGGTCCTCTAGCCG 62.375 65.000 14.67 0.00 0.00 5.52
2587 2872 1.360551 CATGGTCCTCTAGCCGTCG 59.639 63.158 0.00 0.00 0.00 5.12
2605 2890 0.449388 CGGCCATGAAGAAGTTGAGC 59.551 55.000 2.24 0.00 0.00 4.26
2626 2911 0.032952 GTGTAGCCACCGTGTTCTCA 59.967 55.000 0.00 0.00 35.44 3.27
2662 2947 2.981909 ACTCCGCCGAACTCGACA 60.982 61.111 0.00 0.00 43.02 4.35
2694 2979 1.936547 GATCCACATCCTTGAGAACGC 59.063 52.381 0.00 0.00 0.00 4.84
2779 3064 0.458889 AACTAGCCGCGCGTAAATCA 60.459 50.000 29.95 6.33 0.00 2.57
2960 3249 9.904198 TTAATTCAAGAAGATCCATATGTGTGA 57.096 29.630 1.24 0.00 0.00 3.58
3034 3323 3.157087 CCAGGCAGAAAGTTGTGGTATT 58.843 45.455 0.00 0.00 0.00 1.89
3162 3456 5.189145 ACTTACATTTGGTAGAAGTCCGGAT 59.811 40.000 7.81 0.00 32.49 4.18
3184 3478 1.751351 GCAGGAGGGCAAGAATTAACC 59.249 52.381 0.00 0.00 0.00 2.85
3251 3545 2.123077 CCTCCCTCGATGCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
3292 3586 2.805099 CTCCAGCTCTGACAACTTTGAC 59.195 50.000 0.00 0.00 0.00 3.18
3304 3598 1.529010 CTTTGACCAGTGCAGCCCA 60.529 57.895 0.00 0.00 0.00 5.36
3338 3632 2.244117 ATCTCCATGACCGCGTTGCT 62.244 55.000 4.92 0.00 0.00 3.91
3425 3719 8.164058 AGAAAAATCAGGAGAAAAGAAGTGAG 57.836 34.615 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.761704 TCTCTAGAAGAAATCACCTTTCAATCG 59.238 37.037 0.00 0.00 44.82 3.34
1 2 9.612066 ATCTCTAGAAGAAATCACCTTTCAATC 57.388 33.333 0.00 0.00 44.82 2.67
2 3 9.393512 CATCTCTAGAAGAAATCACCTTTCAAT 57.606 33.333 0.00 0.00 44.82 2.57
5 6 7.494298 GGACATCTCTAGAAGAAATCACCTTTC 59.506 40.741 0.00 0.00 43.07 2.62
7 8 6.671779 AGGACATCTCTAGAAGAAATCACCTT 59.328 38.462 0.00 0.00 37.61 3.50
8 9 6.201591 AGGACATCTCTAGAAGAAATCACCT 58.798 40.000 0.00 0.00 37.61 4.00
9 10 6.478512 AGGACATCTCTAGAAGAAATCACC 57.521 41.667 0.00 0.00 37.61 4.02
10 11 6.760770 CCAAGGACATCTCTAGAAGAAATCAC 59.239 42.308 0.00 0.00 37.61 3.06
11 12 6.126940 CCCAAGGACATCTCTAGAAGAAATCA 60.127 42.308 0.00 0.00 37.61 2.57
12 13 6.126911 ACCCAAGGACATCTCTAGAAGAAATC 60.127 42.308 0.00 0.00 37.61 2.17
13 14 5.728741 ACCCAAGGACATCTCTAGAAGAAAT 59.271 40.000 0.00 0.00 37.61 2.17
14 15 5.094387 ACCCAAGGACATCTCTAGAAGAAA 58.906 41.667 0.00 0.00 37.61 2.52
15 16 4.689062 ACCCAAGGACATCTCTAGAAGAA 58.311 43.478 0.00 0.00 37.61 2.52
16 17 4.338795 ACCCAAGGACATCTCTAGAAGA 57.661 45.455 0.00 0.00 38.72 2.87
17 18 5.782893 CTACCCAAGGACATCTCTAGAAG 57.217 47.826 0.00 0.00 0.00 2.85
30 31 0.611896 CCAAACTGCCCTACCCAAGG 60.612 60.000 0.00 0.00 46.09 3.61
31 32 0.404040 TCCAAACTGCCCTACCCAAG 59.596 55.000 0.00 0.00 0.00 3.61
32 33 0.111639 GTCCAAACTGCCCTACCCAA 59.888 55.000 0.00 0.00 0.00 4.12
33 34 1.063070 TGTCCAAACTGCCCTACCCA 61.063 55.000 0.00 0.00 0.00 4.51
34 35 0.322546 CTGTCCAAACTGCCCTACCC 60.323 60.000 0.00 0.00 0.00 3.69
35 36 0.322546 CCTGTCCAAACTGCCCTACC 60.323 60.000 0.00 0.00 0.00 3.18
36 37 0.400594 ACCTGTCCAAACTGCCCTAC 59.599 55.000 0.00 0.00 0.00 3.18
37 38 0.690762 GACCTGTCCAAACTGCCCTA 59.309 55.000 0.00 0.00 0.00 3.53
38 39 1.456287 GACCTGTCCAAACTGCCCT 59.544 57.895 0.00 0.00 0.00 5.19
39 40 4.081050 GACCTGTCCAAACTGCCC 57.919 61.111 0.00 0.00 0.00 5.36
54 55 1.718280 CCTAGGGTAGGGTCATGGAC 58.282 60.000 0.00 0.00 42.42 4.02
64 65 6.010850 TGATGAAGCTATGTACCTAGGGTAG 58.989 44.000 14.81 10.48 39.02 3.18
65 66 5.773680 GTGATGAAGCTATGTACCTAGGGTA 59.226 44.000 14.81 0.12 37.09 3.69
66 67 4.589374 GTGATGAAGCTATGTACCTAGGGT 59.411 45.833 14.81 1.17 40.16 4.34
67 68 4.588951 TGTGATGAAGCTATGTACCTAGGG 59.411 45.833 14.81 0.00 0.00 3.53
68 69 5.791336 TGTGATGAAGCTATGTACCTAGG 57.209 43.478 7.41 7.41 0.00 3.02
69 70 5.636965 GCATGTGATGAAGCTATGTACCTAG 59.363 44.000 1.10 1.10 0.00 3.02
70 71 5.305386 AGCATGTGATGAAGCTATGTACCTA 59.695 40.000 0.00 0.00 35.19 3.08
71 72 4.102210 AGCATGTGATGAAGCTATGTACCT 59.898 41.667 0.00 0.00 35.19 3.08
72 73 4.384056 AGCATGTGATGAAGCTATGTACC 58.616 43.478 0.00 0.00 35.19 3.34
73 74 5.117745 CGTAGCATGTGATGAAGCTATGTAC 59.882 44.000 0.00 0.00 41.14 2.90
74 75 5.222631 CGTAGCATGTGATGAAGCTATGTA 58.777 41.667 0.00 0.00 41.14 2.29
75 76 4.053983 CGTAGCATGTGATGAAGCTATGT 58.946 43.478 0.00 0.00 41.14 2.29
76 77 3.431233 CCGTAGCATGTGATGAAGCTATG 59.569 47.826 0.00 0.00 43.03 2.23
77 78 3.555795 CCCGTAGCATGTGATGAAGCTAT 60.556 47.826 0.00 0.00 41.14 2.97
78 79 2.224042 CCCGTAGCATGTGATGAAGCTA 60.224 50.000 0.00 0.00 38.47 3.32
79 80 1.473965 CCCGTAGCATGTGATGAAGCT 60.474 52.381 0.00 0.00 40.92 3.74
80 81 0.940126 CCCGTAGCATGTGATGAAGC 59.060 55.000 0.00 0.00 0.00 3.86
81 82 2.602257 TCCCGTAGCATGTGATGAAG 57.398 50.000 0.00 0.00 0.00 3.02
82 83 3.118445 TGATTCCCGTAGCATGTGATGAA 60.118 43.478 0.00 0.00 0.00 2.57
83 84 2.433970 TGATTCCCGTAGCATGTGATGA 59.566 45.455 0.00 0.00 0.00 2.92
84 85 2.545526 GTGATTCCCGTAGCATGTGATG 59.454 50.000 0.00 0.00 0.00 3.07
85 86 2.170397 TGTGATTCCCGTAGCATGTGAT 59.830 45.455 0.00 0.00 0.00 3.06
86 87 1.552792 TGTGATTCCCGTAGCATGTGA 59.447 47.619 0.00 0.00 0.00 3.58
87 88 2.022764 TGTGATTCCCGTAGCATGTG 57.977 50.000 0.00 0.00 0.00 3.21
88 89 2.747446 GTTTGTGATTCCCGTAGCATGT 59.253 45.455 0.00 0.00 0.00 3.21
89 90 3.009723 AGTTTGTGATTCCCGTAGCATG 58.990 45.455 0.00 0.00 0.00 4.06
90 91 3.350219 AGTTTGTGATTCCCGTAGCAT 57.650 42.857 0.00 0.00 0.00 3.79
91 92 2.851263 AGTTTGTGATTCCCGTAGCA 57.149 45.000 0.00 0.00 0.00 3.49
92 93 5.049267 TGTTAAAGTTTGTGATTCCCGTAGC 60.049 40.000 0.00 0.00 0.00 3.58
93 94 6.017770 TGTGTTAAAGTTTGTGATTCCCGTAG 60.018 38.462 0.00 0.00 0.00 3.51
94 95 5.821470 TGTGTTAAAGTTTGTGATTCCCGTA 59.179 36.000 0.00 0.00 0.00 4.02
95 96 4.641094 TGTGTTAAAGTTTGTGATTCCCGT 59.359 37.500 0.00 0.00 0.00 5.28
96 97 5.176407 TGTGTTAAAGTTTGTGATTCCCG 57.824 39.130 0.00 0.00 0.00 5.14
97 98 6.569780 ACTTGTGTTAAAGTTTGTGATTCCC 58.430 36.000 0.00 0.00 37.05 3.97
98 99 9.744468 AATACTTGTGTTAAAGTTTGTGATTCC 57.256 29.630 0.00 0.00 40.77 3.01
102 103 9.997482 GAGAAATACTTGTGTTAAAGTTTGTGA 57.003 29.630 0.00 0.00 40.77 3.58
103 104 9.781834 TGAGAAATACTTGTGTTAAAGTTTGTG 57.218 29.630 0.00 0.00 40.77 3.33
113 114 9.301153 GTTGTGAATTTGAGAAATACTTGTGTT 57.699 29.630 0.00 0.00 0.00 3.32
114 115 8.686334 AGTTGTGAATTTGAGAAATACTTGTGT 58.314 29.630 0.00 0.00 0.00 3.72
119 120 9.778741 TGAGTAGTTGTGAATTTGAGAAATACT 57.221 29.630 5.76 5.76 32.22 2.12
122 123 9.125026 AGTTGAGTAGTTGTGAATTTGAGAAAT 57.875 29.630 0.00 0.00 0.00 2.17
123 124 8.506168 AGTTGAGTAGTTGTGAATTTGAGAAA 57.494 30.769 0.00 0.00 0.00 2.52
124 125 9.261180 CTAGTTGAGTAGTTGTGAATTTGAGAA 57.739 33.333 0.00 0.00 0.00 2.87
125 126 7.385205 GCTAGTTGAGTAGTTGTGAATTTGAGA 59.615 37.037 0.00 0.00 0.00 3.27
126 127 7.171508 TGCTAGTTGAGTAGTTGTGAATTTGAG 59.828 37.037 0.00 0.00 0.00 3.02
127 128 6.989759 TGCTAGTTGAGTAGTTGTGAATTTGA 59.010 34.615 0.00 0.00 0.00 2.69
128 129 7.189693 TGCTAGTTGAGTAGTTGTGAATTTG 57.810 36.000 0.00 0.00 0.00 2.32
129 130 7.661437 TCATGCTAGTTGAGTAGTTGTGAATTT 59.339 33.333 0.00 0.00 0.00 1.82
130 131 7.118390 GTCATGCTAGTTGAGTAGTTGTGAATT 59.882 37.037 0.00 0.00 0.00 2.17
131 132 6.591834 GTCATGCTAGTTGAGTAGTTGTGAAT 59.408 38.462 0.00 0.00 0.00 2.57
132 133 5.926542 GTCATGCTAGTTGAGTAGTTGTGAA 59.073 40.000 0.00 0.00 0.00 3.18
133 134 5.243954 AGTCATGCTAGTTGAGTAGTTGTGA 59.756 40.000 4.03 0.00 0.00 3.58
134 135 5.473931 AGTCATGCTAGTTGAGTAGTTGTG 58.526 41.667 4.03 0.00 0.00 3.33
135 136 5.478679 AGAGTCATGCTAGTTGAGTAGTTGT 59.521 40.000 5.47 0.00 0.00 3.32
136 137 5.960113 AGAGTCATGCTAGTTGAGTAGTTG 58.040 41.667 5.47 0.00 0.00 3.16
137 138 7.704578 TTAGAGTCATGCTAGTTGAGTAGTT 57.295 36.000 5.47 0.12 0.00 2.24
138 139 7.889873 ATTAGAGTCATGCTAGTTGAGTAGT 57.110 36.000 5.47 1.07 0.00 2.73
140 141 9.574516 TGATATTAGAGTCATGCTAGTTGAGTA 57.425 33.333 5.47 0.00 0.00 2.59
141 142 8.470657 TGATATTAGAGTCATGCTAGTTGAGT 57.529 34.615 5.23 5.23 0.00 3.41
142 143 7.541783 GCTGATATTAGAGTCATGCTAGTTGAG 59.458 40.741 0.00 0.00 0.00 3.02
143 144 7.014615 TGCTGATATTAGAGTCATGCTAGTTGA 59.985 37.037 0.00 0.00 0.00 3.18
144 145 7.150640 TGCTGATATTAGAGTCATGCTAGTTG 58.849 38.462 0.00 0.00 0.00 3.16
145 146 7.295322 TGCTGATATTAGAGTCATGCTAGTT 57.705 36.000 0.00 0.00 0.00 2.24
146 147 6.907853 TGCTGATATTAGAGTCATGCTAGT 57.092 37.500 0.00 0.00 0.00 2.57
147 148 7.774134 AGATGCTGATATTAGAGTCATGCTAG 58.226 38.462 0.00 0.00 0.00 3.42
148 149 7.147932 GGAGATGCTGATATTAGAGTCATGCTA 60.148 40.741 0.00 0.00 0.00 3.49
149 150 6.351202 GGAGATGCTGATATTAGAGTCATGCT 60.351 42.308 0.00 0.00 0.00 3.79
150 151 5.811613 GGAGATGCTGATATTAGAGTCATGC 59.188 44.000 0.00 0.00 0.00 4.06
151 152 6.932947 TGGAGATGCTGATATTAGAGTCATG 58.067 40.000 0.00 0.00 0.00 3.07
152 153 7.736881 ATGGAGATGCTGATATTAGAGTCAT 57.263 36.000 0.00 0.00 0.00 3.06
153 154 8.835550 ATATGGAGATGCTGATATTAGAGTCA 57.164 34.615 0.00 0.00 0.00 3.41
154 155 9.135189 AGATATGGAGATGCTGATATTAGAGTC 57.865 37.037 0.00 0.00 0.00 3.36
155 156 9.135189 GAGATATGGAGATGCTGATATTAGAGT 57.865 37.037 0.00 0.00 0.00 3.24
156 157 9.134055 TGAGATATGGAGATGCTGATATTAGAG 57.866 37.037 0.00 0.00 0.00 2.43
157 158 9.484806 TTGAGATATGGAGATGCTGATATTAGA 57.515 33.333 0.00 0.00 0.00 2.10
160 161 9.228949 GTTTTGAGATATGGAGATGCTGATATT 57.771 33.333 0.00 0.00 0.00 1.28
161 162 8.380867 TGTTTTGAGATATGGAGATGCTGATAT 58.619 33.333 0.00 0.00 0.00 1.63
162 163 7.738847 TGTTTTGAGATATGGAGATGCTGATA 58.261 34.615 0.00 0.00 0.00 2.15
163 164 6.598503 TGTTTTGAGATATGGAGATGCTGAT 58.401 36.000 0.00 0.00 0.00 2.90
164 165 5.993055 TGTTTTGAGATATGGAGATGCTGA 58.007 37.500 0.00 0.00 0.00 4.26
165 166 6.688637 TTGTTTTGAGATATGGAGATGCTG 57.311 37.500 0.00 0.00 0.00 4.41
166 167 7.893124 AATTGTTTTGAGATATGGAGATGCT 57.107 32.000 0.00 0.00 0.00 3.79
167 168 9.837525 GATAATTGTTTTGAGATATGGAGATGC 57.162 33.333 0.00 0.00 0.00 3.91
191 192 9.624373 AATGCTATGAGAAGTTTGATACTTGAT 57.376 29.630 0.00 0.00 47.00 2.57
192 193 9.102757 GAATGCTATGAGAAGTTTGATACTTGA 57.897 33.333 0.00 0.00 47.00 3.02
193 194 8.886719 TGAATGCTATGAGAAGTTTGATACTTG 58.113 33.333 0.00 0.00 47.00 3.16
195 196 8.887717 GTTGAATGCTATGAGAAGTTTGATACT 58.112 33.333 0.00 0.00 39.32 2.12
196 197 8.668353 TGTTGAATGCTATGAGAAGTTTGATAC 58.332 33.333 0.00 0.00 0.00 2.24
197 198 8.668353 GTGTTGAATGCTATGAGAAGTTTGATA 58.332 33.333 0.00 0.00 0.00 2.15
198 199 7.175467 TGTGTTGAATGCTATGAGAAGTTTGAT 59.825 33.333 0.00 0.00 0.00 2.57
199 200 6.486320 TGTGTTGAATGCTATGAGAAGTTTGA 59.514 34.615 0.00 0.00 0.00 2.69
200 201 6.580041 GTGTGTTGAATGCTATGAGAAGTTTG 59.420 38.462 0.00 0.00 0.00 2.93
201 202 6.488006 AGTGTGTTGAATGCTATGAGAAGTTT 59.512 34.615 0.00 0.00 0.00 2.66
202 203 6.000219 AGTGTGTTGAATGCTATGAGAAGTT 59.000 36.000 0.00 0.00 0.00 2.66
203 204 5.555017 AGTGTGTTGAATGCTATGAGAAGT 58.445 37.500 0.00 0.00 0.00 3.01
204 205 5.640783 TGAGTGTGTTGAATGCTATGAGAAG 59.359 40.000 0.00 0.00 0.00 2.85
205 206 5.550290 TGAGTGTGTTGAATGCTATGAGAA 58.450 37.500 0.00 0.00 0.00 2.87
206 207 5.151297 TGAGTGTGTTGAATGCTATGAGA 57.849 39.130 0.00 0.00 0.00 3.27
207 208 7.493645 TCTTATGAGTGTGTTGAATGCTATGAG 59.506 37.037 0.00 0.00 0.00 2.90
208 209 7.330262 TCTTATGAGTGTGTTGAATGCTATGA 58.670 34.615 0.00 0.00 0.00 2.15
209 210 7.493645 TCTCTTATGAGTGTGTTGAATGCTATG 59.506 37.037 5.60 0.00 40.98 2.23
210 211 7.559486 TCTCTTATGAGTGTGTTGAATGCTAT 58.441 34.615 5.60 0.00 40.98 2.97
211 212 6.935167 TCTCTTATGAGTGTGTTGAATGCTA 58.065 36.000 5.60 0.00 40.98 3.49
212 213 5.798132 TCTCTTATGAGTGTGTTGAATGCT 58.202 37.500 5.60 0.00 40.98 3.79
213 214 6.486253 TTCTCTTATGAGTGTGTTGAATGC 57.514 37.500 5.60 0.00 40.98 3.56
214 215 9.903682 AAAATTCTCTTATGAGTGTGTTGAATG 57.096 29.630 5.60 0.00 40.98 2.67
283 284 9.905713 TGAGAGTCTTAAATAGCATGGTAATTT 57.094 29.630 8.98 11.75 0.00 1.82
284 285 9.905713 TTGAGAGTCTTAAATAGCATGGTAATT 57.094 29.630 8.98 9.53 0.00 1.40
285 286 9.905713 TTTGAGAGTCTTAAATAGCATGGTAAT 57.094 29.630 8.98 0.00 0.00 1.89
286 287 9.733556 TTTTGAGAGTCTTAAATAGCATGGTAA 57.266 29.630 8.98 0.00 0.00 2.85
287 288 9.905713 ATTTTGAGAGTCTTAAATAGCATGGTA 57.094 29.630 10.58 7.15 0.00 3.25
288 289 8.814038 ATTTTGAGAGTCTTAAATAGCATGGT 57.186 30.769 10.58 1.62 0.00 3.55
301 302 9.377312 GCTTCACTTAGATTATTTTGAGAGTCT 57.623 33.333 0.00 0.00 0.00 3.24
302 303 9.155975 TGCTTCACTTAGATTATTTTGAGAGTC 57.844 33.333 0.00 0.00 0.00 3.36
303 304 9.678260 ATGCTTCACTTAGATTATTTTGAGAGT 57.322 29.630 0.00 0.00 0.00 3.24
304 305 9.932699 CATGCTTCACTTAGATTATTTTGAGAG 57.067 33.333 0.00 0.00 0.00 3.20
305 306 9.671279 TCATGCTTCACTTAGATTATTTTGAGA 57.329 29.630 0.00 0.00 0.00 3.27
306 307 9.932699 CTCATGCTTCACTTAGATTATTTTGAG 57.067 33.333 0.00 0.00 0.00 3.02
307 308 9.671279 TCTCATGCTTCACTTAGATTATTTTGA 57.329 29.630 0.00 0.00 0.00 2.69
308 309 9.932699 CTCTCATGCTTCACTTAGATTATTTTG 57.067 33.333 0.00 0.00 0.00 2.44
309 310 9.896645 TCTCTCATGCTTCACTTAGATTATTTT 57.103 29.630 0.00 0.00 0.00 1.82
311 312 9.709495 GATCTCTCATGCTTCACTTAGATTATT 57.291 33.333 0.00 0.00 0.00 1.40
312 313 8.868103 TGATCTCTCATGCTTCACTTAGATTAT 58.132 33.333 0.00 0.00 0.00 1.28
313 314 8.242729 TGATCTCTCATGCTTCACTTAGATTA 57.757 34.615 0.00 0.00 0.00 1.75
314 315 7.122138 TGATCTCTCATGCTTCACTTAGATT 57.878 36.000 0.00 0.00 0.00 2.40
315 316 6.728089 TGATCTCTCATGCTTCACTTAGAT 57.272 37.500 0.00 0.00 0.00 1.98
316 317 6.535963 TTGATCTCTCATGCTTCACTTAGA 57.464 37.500 0.00 0.00 0.00 2.10
317 318 7.280428 ACAATTGATCTCTCATGCTTCACTTAG 59.720 37.037 13.59 0.00 0.00 2.18
318 319 7.108194 ACAATTGATCTCTCATGCTTCACTTA 58.892 34.615 13.59 0.00 0.00 2.24
319 320 5.944599 ACAATTGATCTCTCATGCTTCACTT 59.055 36.000 13.59 0.00 0.00 3.16
320 321 5.498393 ACAATTGATCTCTCATGCTTCACT 58.502 37.500 13.59 0.00 0.00 3.41
321 322 5.814764 ACAATTGATCTCTCATGCTTCAC 57.185 39.130 13.59 0.00 0.00 3.18
322 323 6.657966 AGAAACAATTGATCTCTCATGCTTCA 59.342 34.615 13.59 0.00 26.80 3.02
323 324 7.086230 AGAAACAATTGATCTCTCATGCTTC 57.914 36.000 13.59 0.00 0.00 3.86
324 325 8.749026 ATAGAAACAATTGATCTCTCATGCTT 57.251 30.769 13.59 0.00 0.00 3.91
325 326 9.842775 TTATAGAAACAATTGATCTCTCATGCT 57.157 29.630 13.59 0.00 0.00 3.79
344 345 8.609176 GCACGATGGTAGATTTGTTTTATAGAA 58.391 33.333 0.00 0.00 0.00 2.10
345 346 7.985184 AGCACGATGGTAGATTTGTTTTATAGA 59.015 33.333 0.00 0.00 0.00 1.98
346 347 8.142994 AGCACGATGGTAGATTTGTTTTATAG 57.857 34.615 0.00 0.00 0.00 1.31
347 348 7.985184 AGAGCACGATGGTAGATTTGTTTTATA 59.015 33.333 0.00 0.00 0.00 0.98
348 349 6.823689 AGAGCACGATGGTAGATTTGTTTTAT 59.176 34.615 0.00 0.00 0.00 1.40
349 350 6.170506 AGAGCACGATGGTAGATTTGTTTTA 58.829 36.000 0.00 0.00 0.00 1.52
350 351 5.003804 AGAGCACGATGGTAGATTTGTTTT 58.996 37.500 0.00 0.00 0.00 2.43
351 352 4.579869 AGAGCACGATGGTAGATTTGTTT 58.420 39.130 0.00 0.00 0.00 2.83
352 353 4.207891 AGAGCACGATGGTAGATTTGTT 57.792 40.909 0.00 0.00 0.00 2.83
353 354 3.895232 AGAGCACGATGGTAGATTTGT 57.105 42.857 0.00 0.00 0.00 2.83
354 355 6.535150 TCTTTTAGAGCACGATGGTAGATTTG 59.465 38.462 0.00 0.00 0.00 2.32
355 356 6.640518 TCTTTTAGAGCACGATGGTAGATTT 58.359 36.000 0.00 0.00 0.00 2.17
356 357 6.222038 TCTTTTAGAGCACGATGGTAGATT 57.778 37.500 0.00 0.00 0.00 2.40
357 358 5.854010 TCTTTTAGAGCACGATGGTAGAT 57.146 39.130 0.00 0.00 0.00 1.98
358 359 5.854010 ATCTTTTAGAGCACGATGGTAGA 57.146 39.130 0.00 0.00 0.00 2.59
359 360 9.692749 TTTATATCTTTTAGAGCACGATGGTAG 57.307 33.333 0.00 0.00 0.00 3.18
381 382 9.177608 TGTCATTTGCTCTAGTGCTTTATTTAT 57.822 29.630 17.08 0.00 0.00 1.40
382 383 8.560355 TGTCATTTGCTCTAGTGCTTTATTTA 57.440 30.769 17.08 0.00 0.00 1.40
383 384 7.452880 TGTCATTTGCTCTAGTGCTTTATTT 57.547 32.000 17.08 0.00 0.00 1.40
384 385 7.452880 TTGTCATTTGCTCTAGTGCTTTATT 57.547 32.000 17.08 0.00 0.00 1.40
385 386 7.175641 AGTTTGTCATTTGCTCTAGTGCTTTAT 59.824 33.333 17.08 5.86 0.00 1.40
386 387 6.486657 AGTTTGTCATTTGCTCTAGTGCTTTA 59.513 34.615 17.08 3.90 0.00 1.85
387 388 5.300286 AGTTTGTCATTTGCTCTAGTGCTTT 59.700 36.000 17.08 0.42 0.00 3.51
388 389 4.823989 AGTTTGTCATTTGCTCTAGTGCTT 59.176 37.500 17.08 0.75 0.00 3.91
389 390 4.392940 AGTTTGTCATTTGCTCTAGTGCT 58.607 39.130 17.08 0.00 0.00 4.40
390 391 4.756084 AGTTTGTCATTTGCTCTAGTGC 57.244 40.909 9.86 9.86 0.00 4.40
391 392 6.091441 GGAGTAGTTTGTCATTTGCTCTAGTG 59.909 42.308 0.00 0.00 0.00 2.74
392 393 6.166982 GGAGTAGTTTGTCATTTGCTCTAGT 58.833 40.000 0.00 0.00 0.00 2.57
393 394 5.289675 CGGAGTAGTTTGTCATTTGCTCTAG 59.710 44.000 0.00 0.00 0.00 2.43
394 395 5.047590 TCGGAGTAGTTTGTCATTTGCTCTA 60.048 40.000 0.00 0.00 0.00 2.43
395 396 3.997021 CGGAGTAGTTTGTCATTTGCTCT 59.003 43.478 0.00 0.00 0.00 4.09
396 397 3.994392 TCGGAGTAGTTTGTCATTTGCTC 59.006 43.478 0.00 0.00 0.00 4.26
397 398 3.997021 CTCGGAGTAGTTTGTCATTTGCT 59.003 43.478 0.00 0.00 0.00 3.91
398 399 3.994392 TCTCGGAGTAGTTTGTCATTTGC 59.006 43.478 4.69 0.00 0.00 3.68
399 400 5.470368 TCTCTCGGAGTAGTTTGTCATTTG 58.530 41.667 4.69 0.00 0.00 2.32
400 401 5.723672 TCTCTCGGAGTAGTTTGTCATTT 57.276 39.130 4.69 0.00 0.00 2.32
401 402 5.923733 ATCTCTCGGAGTAGTTTGTCATT 57.076 39.130 4.69 0.00 0.00 2.57
402 403 8.693120 TTATATCTCTCGGAGTAGTTTGTCAT 57.307 34.615 4.69 0.00 0.00 3.06
403 404 7.774157 ACTTATATCTCTCGGAGTAGTTTGTCA 59.226 37.037 4.69 0.00 0.00 3.58
404 405 8.071368 CACTTATATCTCTCGGAGTAGTTTGTC 58.929 40.741 4.69 0.00 0.00 3.18
405 406 7.774157 TCACTTATATCTCTCGGAGTAGTTTGT 59.226 37.037 4.69 0.00 0.00 2.83
406 407 8.155821 TCACTTATATCTCTCGGAGTAGTTTG 57.844 38.462 4.69 0.00 0.00 2.93
407 408 8.749026 TTCACTTATATCTCTCGGAGTAGTTT 57.251 34.615 4.69 0.00 0.00 2.66
408 409 8.212312 TCTTCACTTATATCTCTCGGAGTAGTT 58.788 37.037 4.69 0.19 0.00 2.24
409 410 7.737869 TCTTCACTTATATCTCTCGGAGTAGT 58.262 38.462 4.69 0.00 0.00 2.73
410 411 8.786826 ATCTTCACTTATATCTCTCGGAGTAG 57.213 38.462 4.69 1.89 0.00 2.57
411 412 8.376270 TGATCTTCACTTATATCTCTCGGAGTA 58.624 37.037 4.69 0.00 0.00 2.59
412 413 7.227873 TGATCTTCACTTATATCTCTCGGAGT 58.772 38.462 4.69 0.00 0.00 3.85
413 414 7.680442 TGATCTTCACTTATATCTCTCGGAG 57.320 40.000 0.00 0.00 0.00 4.63
414 415 8.642935 ATTGATCTTCACTTATATCTCTCGGA 57.357 34.615 0.00 0.00 0.00 4.55
441 442 9.982651 ACATAGTTGCATAATTATTCGACTACT 57.017 29.630 20.75 13.29 31.65 2.57
443 444 9.974980 TCACATAGTTGCATAATTATTCGACTA 57.025 29.630 20.65 20.65 32.81 2.59
444 445 8.887036 TCACATAGTTGCATAATTATTCGACT 57.113 30.769 18.33 18.33 30.45 4.18
445 446 9.586150 CTTCACATAGTTGCATAATTATTCGAC 57.414 33.333 7.24 7.24 0.00 4.20
446 447 9.541143 TCTTCACATAGTTGCATAATTATTCGA 57.459 29.630 0.00 0.00 0.00 3.71
447 448 9.586150 GTCTTCACATAGTTGCATAATTATTCG 57.414 33.333 0.00 0.00 0.00 3.34
455 456 9.967346 GTTATAGAGTCTTCACATAGTTGCATA 57.033 33.333 0.00 0.00 0.00 3.14
456 457 8.478066 TGTTATAGAGTCTTCACATAGTTGCAT 58.522 33.333 0.00 0.00 0.00 3.96
457 458 7.836842 TGTTATAGAGTCTTCACATAGTTGCA 58.163 34.615 0.00 0.00 0.00 4.08
458 459 8.879342 ATGTTATAGAGTCTTCACATAGTTGC 57.121 34.615 0.00 0.00 0.00 4.17
614 615 5.199726 GCACATGTTTCTACGTAACGTTTT 58.800 37.500 5.91 0.00 41.54 2.43
631 632 6.589907 TGTCTTACTACTTGTACATGCACATG 59.410 38.462 9.06 9.06 44.15 3.21
653 676 3.683989 CATGATTTGTACGTGGCATGTC 58.316 45.455 17.00 8.80 0.00 3.06
731 778 7.231317 TGACTTCTATTTTTGCTTCCTTGACAT 59.769 33.333 0.00 0.00 0.00 3.06
752 823 7.414429 GGTTTCCTAGTTGTTTACGTTTGACTT 60.414 37.037 0.00 0.00 0.00 3.01
766 837 8.520351 CCCTTATTTGTTTAGGTTTCCTAGTTG 58.480 37.037 0.00 0.00 37.42 3.16
769 840 6.661805 TGCCCTTATTTGTTTAGGTTTCCTAG 59.338 38.462 0.00 0.00 37.42 3.02
868 957 3.942351 TGTGGAACAGCAGATCAGG 57.058 52.632 0.00 0.00 45.67 3.86
960 1072 6.152831 GGTTGCCAGACTTCTAATTATTTGGT 59.847 38.462 0.00 0.00 0.00 3.67
966 1078 5.938125 GTCTTGGTTGCCAGACTTCTAATTA 59.062 40.000 9.11 0.00 33.81 1.40
978 1090 2.192861 CAAGCCGTCTTGGTTGCCA 61.193 57.895 0.00 0.00 44.53 4.92
1027 1190 3.181434 TGGAGGTGGCTTTTTGTGTCTAT 60.181 43.478 0.00 0.00 0.00 1.98
1165 1371 6.256053 ACAATTACCCAAACCTGATGATTCT 58.744 36.000 0.00 0.00 0.00 2.40
1285 1537 6.228258 TGTATTTAAGTCGCTCAACTTCCTT 58.772 36.000 0.01 0.00 40.01 3.36
1287 1539 6.402226 CCTTGTATTTAAGTCGCTCAACTTCC 60.402 42.308 0.01 0.00 40.01 3.46
1477 1736 9.521841 TGTTTCACCCTGTACAATCAAATATTA 57.478 29.630 0.00 0.00 0.00 0.98
1604 1867 3.074390 ACAACATCCTTGTTCTCATGGGA 59.926 43.478 0.00 0.00 44.24 4.37
1668 1931 3.884693 TGGTCGATACAAATAGACGGCTA 59.115 43.478 0.00 0.00 38.29 3.93
1798 2061 9.738832 GCATGTTTGTAAAGGAAACTACTTAAA 57.261 29.630 0.00 0.00 42.68 1.52
1844 2119 7.595502 CGGTCTTGTATTATGTTCCTGTCTATC 59.404 40.741 0.00 0.00 0.00 2.08
1938 2213 9.758651 CAAGGTATGTTACTATGTATTGTGCTA 57.241 33.333 0.00 0.00 0.00 3.49
1948 2224 9.769093 GTTACAAAAGCAAGGTATGTTACTATG 57.231 33.333 0.00 0.00 0.00 2.23
1984 2260 3.920231 ATGCTTACATCCTCTTCTGCA 57.080 42.857 0.00 0.00 0.00 4.41
2025 2301 2.729882 GGCAAAGCTATCGGTATGTACG 59.270 50.000 0.00 0.00 0.00 3.67
2075 2353 4.141937 TGCGGCTAAGTCTAAATGTGAGAT 60.142 41.667 0.00 0.00 0.00 2.75
2078 2356 3.603158 TGCGGCTAAGTCTAAATGTGA 57.397 42.857 0.00 0.00 0.00 3.58
2135 2413 7.286775 AGTTTCCTGCAAAATTTTAGTGACCTA 59.713 33.333 2.44 0.00 0.00 3.08
2148 2426 5.957842 ACATATTCGAGTTTCCTGCAAAA 57.042 34.783 0.00 0.00 0.00 2.44
2157 2435 8.561738 AGTAACCATGAAACATATTCGAGTTT 57.438 30.769 0.00 0.59 40.38 2.66
2312 2595 7.412853 GGATTTGATCATATGTATGAATCGGC 58.587 38.462 3.15 0.00 44.96 5.54
2313 2596 7.254556 CCGGATTTGATCATATGTATGAATCGG 60.255 40.741 0.00 7.89 44.96 4.18
2314 2597 7.278646 ACCGGATTTGATCATATGTATGAATCG 59.721 37.037 9.46 1.82 44.96 3.34
2330 2614 1.562008 TGCCTTATGGACCGGATTTGA 59.438 47.619 9.46 0.00 34.57 2.69
2461 2746 1.334779 GCAAAGAGCAGCAGTCAACTG 60.335 52.381 5.77 5.77 44.30 3.16
2517 2802 1.065126 AGGCTATGAGGGAACACTTGC 60.065 52.381 0.00 0.00 0.00 4.01
2532 2817 1.241485 TATCCCAGTGGAGGAGGCTA 58.759 55.000 11.95 0.00 46.08 3.93
2549 2834 4.584638 TGGCAGATGGGTTGTAGTTTAT 57.415 40.909 0.00 0.00 0.00 1.40
2553 2838 1.064463 CCATGGCAGATGGGTTGTAGT 60.064 52.381 0.00 0.00 35.58 2.73
2584 2869 1.734465 CTCAACTTCTTCATGGCCGAC 59.266 52.381 0.00 0.00 0.00 4.79
2587 2872 1.471684 CTGCTCAACTTCTTCATGGCC 59.528 52.381 0.00 0.00 0.00 5.36
2626 2911 1.288508 TGGCCATGGGGAGTAGCAAT 61.289 55.000 15.13 0.00 35.59 3.56
2662 2947 1.866015 TGTGGATCCTCGATGACCTT 58.134 50.000 14.23 0.00 0.00 3.50
2779 3064 7.654022 TCCAGGTTAAGTTTTCAATTTCAGT 57.346 32.000 0.00 0.00 0.00 3.41
3034 3323 7.012894 ACAACTTTTCGTGTGAAATCAGGAATA 59.987 33.333 0.00 0.00 43.32 1.75
3162 3456 3.371595 GGTTAATTCTTGCCCTCCTGCTA 60.372 47.826 0.00 0.00 0.00 3.49
3184 3478 2.799562 TGAGTATCTTCTGCGAATGGCG 60.800 50.000 0.00 0.00 39.93 5.69
3242 3536 0.681243 GTTGGGGTTGAGGAGGCATC 60.681 60.000 0.00 0.00 0.00 3.91
3251 3545 1.773635 CCCTGGATGTTGGGGTTGA 59.226 57.895 0.00 0.00 39.76 3.18
3292 3586 3.357079 GAACGTGGGCTGCACTGG 61.357 66.667 2.50 0.00 0.00 4.00
3304 3598 1.187087 GAGATGTCCAGGGAGAACGT 58.813 55.000 0.00 0.00 0.00 3.99
3425 3719 3.262660 TCATGCTATCCCAGATCCACATC 59.737 47.826 0.00 0.00 0.00 3.06
3492 3786 4.335416 TCTGCCATTTCTTCCGATTTTCT 58.665 39.130 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.