Multiple sequence alignment - TraesCS3A01G266700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G266700 chr3A 100.000 5118 0 0 1 5118 491221850 491226967 0.000000e+00 9452
1 TraesCS3A01G266700 chr3A 91.892 666 44 6 4461 5118 44117570 44116907 0.000000e+00 922
2 TraesCS3A01G266700 chr3A 91.729 665 46 4 4461 5118 43587854 43587192 0.000000e+00 915
3 TraesCS3A01G266700 chr3A 91.729 665 46 5 4461 5118 44170734 44170072 0.000000e+00 915
4 TraesCS3A01G266700 chr3A 91.592 666 46 4 4461 5118 43534512 43533849 0.000000e+00 911
5 TraesCS3A01G266700 chr3D 89.889 2166 175 28 1337 3487 370123459 370125595 0.000000e+00 2747
6 TraesCS3A01G266700 chr3D 95.110 818 37 1 3516 4333 370125766 370126580 0.000000e+00 1286
7 TraesCS3A01G266700 chr3D 89.844 256 19 2 1039 1293 370123207 370123456 6.390000e-84 322
8 TraesCS3A01G266700 chr3D 87.925 265 15 7 715 964 370122910 370123172 3.870000e-76 296
9 TraesCS3A01G266700 chr3D 96.154 130 5 0 4333 4462 22038477 22038348 4.010000e-51 213
10 TraesCS3A01G266700 chr3D 96.124 129 5 0 4334 4462 28849952 28849824 1.440000e-50 211
11 TraesCS3A01G266700 chr3B 89.406 1699 152 18 1782 3478 481650248 481651920 0.000000e+00 2115
12 TraesCS3A01G266700 chr3B 90.470 829 51 9 3516 4333 481652084 481652895 0.000000e+00 1068
13 TraesCS3A01G266700 chr3B 86.397 544 50 11 739 1270 481649553 481650084 1.600000e-159 573
14 TraesCS3A01G266700 chr3B 82.285 604 81 15 132 710 758628840 758628238 2.750000e-137 499
15 TraesCS3A01G266700 chr3B 78.317 309 63 4 124 429 637620559 637620866 4.040000e-46 196
16 TraesCS3A01G266700 chr1D 92.042 666 41 9 4461 5118 27971418 27970757 0.000000e+00 926
17 TraesCS3A01G266700 chr1D 91.579 665 48 6 4461 5118 341843918 341844581 0.000000e+00 911
18 TraesCS3A01G266700 chr1D 95.455 132 5 1 4332 4462 27971609 27971478 5.190000e-50 209
19 TraesCS3A01G266700 chr7D 92.018 664 41 6 4461 5118 592188145 592187488 0.000000e+00 922
20 TraesCS3A01G266700 chr6D 91.831 661 46 7 4463 5118 275171433 275172090 0.000000e+00 915
21 TraesCS3A01G266700 chr5D 91.554 663 47 5 4462 5118 411248793 411249452 0.000000e+00 905
22 TraesCS3A01G266700 chr5D 81.414 608 74 16 135 707 554816766 554816163 1.300000e-125 460
23 TraesCS3A01G266700 chr5D 98.450 129 2 0 4334 4462 487744124 487743996 1.430000e-55 228
24 TraesCS3A01G266700 chr5D 96.124 129 5 0 4334 4462 395182238 395182110 1.440000e-50 211
25 TraesCS3A01G266700 chr5D 96.124 129 5 0 4334 4462 395187555 395187427 1.440000e-50 211
26 TraesCS3A01G266700 chr7B 82.500 600 81 13 132 707 735987041 735986442 5.910000e-139 505
27 TraesCS3A01G266700 chr7B 81.878 607 84 13 126 707 217303307 217303912 5.960000e-134 488
28 TraesCS3A01G266700 chr7B 81.954 604 83 13 132 710 665401303 665400701 5.960000e-134 488
29 TraesCS3A01G266700 chr7B 81.894 602 83 13 134 710 608187680 608187080 7.700000e-133 484
30 TraesCS3A01G266700 chr2D 82.343 606 82 14 126 707 353317436 353318040 2.130000e-138 503
31 TraesCS3A01G266700 chr4B 82.043 607 83 13 126 707 424285238 424285843 1.280000e-135 494
32 TraesCS3A01G266700 chr4B 81.970 599 82 11 134 707 119336106 119336703 7.700000e-133 484
33 TraesCS3A01G266700 chr5B 81.788 604 84 13 132 710 79417824 79417222 2.770000e-132 483
34 TraesCS3A01G266700 chr5B 81.788 604 84 15 132 710 445179595 445178993 2.770000e-132 483
35 TraesCS3A01G266700 chr5B 80.801 599 88 16 135 710 491260038 491259444 1.310000e-120 444
36 TraesCS3A01G266700 chr2B 81.683 606 87 13 126 707 748070513 748071118 2.770000e-132 483
37 TraesCS3A01G266700 chr2B 79.903 617 84 19 132 710 66771083 66770469 2.850000e-112 416
38 TraesCS3A01G266700 chrUn 82.686 566 72 15 126 667 308232026 308232589 3.580000e-131 479
39 TraesCS3A01G266700 chrUn 95.385 130 6 0 4333 4462 257576623 257576752 1.870000e-49 207
40 TraesCS3A01G266700 chr4A 81.697 601 85 11 134 710 24156825 24156226 1.290000e-130 477
41 TraesCS3A01G266700 chr4A 90.850 153 9 4 4315 4462 713984782 713984934 3.130000e-47 200
42 TraesCS3A01G266700 chr2A 80.960 604 87 17 132 710 669113878 669113278 2.170000e-123 453
43 TraesCS3A01G266700 chr6A 94.737 133 7 0 4331 4463 614765929 614765797 1.870000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G266700 chr3A 491221850 491226967 5117 False 9452.00 9452 100.000000 1 5118 1 chr3A.!!$F1 5117
1 TraesCS3A01G266700 chr3A 44116907 44117570 663 True 922.00 922 91.892000 4461 5118 1 chr3A.!!$R3 657
2 TraesCS3A01G266700 chr3A 43587192 43587854 662 True 915.00 915 91.729000 4461 5118 1 chr3A.!!$R2 657
3 TraesCS3A01G266700 chr3A 44170072 44170734 662 True 915.00 915 91.729000 4461 5118 1 chr3A.!!$R4 657
4 TraesCS3A01G266700 chr3A 43533849 43534512 663 True 911.00 911 91.592000 4461 5118 1 chr3A.!!$R1 657
5 TraesCS3A01G266700 chr3D 370122910 370126580 3670 False 1162.75 2747 90.692000 715 4333 4 chr3D.!!$F1 3618
6 TraesCS3A01G266700 chr3B 481649553 481652895 3342 False 1252.00 2115 88.757667 739 4333 3 chr3B.!!$F2 3594
7 TraesCS3A01G266700 chr3B 758628238 758628840 602 True 499.00 499 82.285000 132 710 1 chr3B.!!$R1 578
8 TraesCS3A01G266700 chr1D 341843918 341844581 663 False 911.00 911 91.579000 4461 5118 1 chr1D.!!$F1 657
9 TraesCS3A01G266700 chr1D 27970757 27971609 852 True 567.50 926 93.748500 4332 5118 2 chr1D.!!$R1 786
10 TraesCS3A01G266700 chr7D 592187488 592188145 657 True 922.00 922 92.018000 4461 5118 1 chr7D.!!$R1 657
11 TraesCS3A01G266700 chr6D 275171433 275172090 657 False 915.00 915 91.831000 4463 5118 1 chr6D.!!$F1 655
12 TraesCS3A01G266700 chr5D 411248793 411249452 659 False 905.00 905 91.554000 4462 5118 1 chr5D.!!$F1 656
13 TraesCS3A01G266700 chr5D 554816163 554816766 603 True 460.00 460 81.414000 135 707 1 chr5D.!!$R4 572
14 TraesCS3A01G266700 chr7B 735986442 735987041 599 True 505.00 505 82.500000 132 707 1 chr7B.!!$R3 575
15 TraesCS3A01G266700 chr7B 217303307 217303912 605 False 488.00 488 81.878000 126 707 1 chr7B.!!$F1 581
16 TraesCS3A01G266700 chr7B 665400701 665401303 602 True 488.00 488 81.954000 132 710 1 chr7B.!!$R2 578
17 TraesCS3A01G266700 chr7B 608187080 608187680 600 True 484.00 484 81.894000 134 710 1 chr7B.!!$R1 576
18 TraesCS3A01G266700 chr2D 353317436 353318040 604 False 503.00 503 82.343000 126 707 1 chr2D.!!$F1 581
19 TraesCS3A01G266700 chr4B 424285238 424285843 605 False 494.00 494 82.043000 126 707 1 chr4B.!!$F2 581
20 TraesCS3A01G266700 chr4B 119336106 119336703 597 False 484.00 484 81.970000 134 707 1 chr4B.!!$F1 573
21 TraesCS3A01G266700 chr5B 79417222 79417824 602 True 483.00 483 81.788000 132 710 1 chr5B.!!$R1 578
22 TraesCS3A01G266700 chr5B 445178993 445179595 602 True 483.00 483 81.788000 132 710 1 chr5B.!!$R2 578
23 TraesCS3A01G266700 chr5B 491259444 491260038 594 True 444.00 444 80.801000 135 710 1 chr5B.!!$R3 575
24 TraesCS3A01G266700 chr2B 748070513 748071118 605 False 483.00 483 81.683000 126 707 1 chr2B.!!$F1 581
25 TraesCS3A01G266700 chr2B 66770469 66771083 614 True 416.00 416 79.903000 132 710 1 chr2B.!!$R1 578
26 TraesCS3A01G266700 chrUn 308232026 308232589 563 False 479.00 479 82.686000 126 667 1 chrUn.!!$F2 541
27 TraesCS3A01G266700 chr4A 24156226 24156825 599 True 477.00 477 81.697000 134 710 1 chr4A.!!$R1 576
28 TraesCS3A01G266700 chr2A 669113278 669113878 600 True 453.00 453 80.960000 132 710 1 chr2A.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 869 0.179258 CGCGAGAAGTACGTTTTGCC 60.179 55.0 0.0 0.0 0.00 4.52 F
1595 1715 0.034186 GGATGGAGCCCACATGTCAA 60.034 55.0 0.0 0.0 35.80 3.18 F
2227 2349 0.320421 GCTCGTCTAAGGTGTTGCCA 60.320 55.0 0.0 0.0 40.61 4.92 F
3234 3360 0.320073 AAATCGGGCGAAGACAACGA 60.320 50.0 0.0 0.0 37.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2472 2594 0.171455 GATGTCGTCGAGGCTCAGTT 59.829 55.0 15.95 0.0 0.00 3.16 R
3226 3352 0.249322 CCCACTTCACGTCGTTGTCT 60.249 55.0 0.00 0.0 0.00 3.41 R
3326 3452 0.320374 TTCTTCCTGTGTGCTACCCG 59.680 55.0 0.00 0.0 0.00 5.28 R
4859 5205 0.033504 GAACAAGAGGCTCACCACGA 59.966 55.0 18.26 0.0 39.06 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.863872 AATTGCCTATTTACTCAACAGTTAGT 57.136 30.769 0.00 0.00 33.62 2.24
27 28 9.953565 AATTGCCTATTTACTCAACAGTTAGTA 57.046 29.630 0.00 0.00 33.62 1.82
29 30 9.953565 TTGCCTATTTACTCAACAGTTAGTATT 57.046 29.630 0.00 0.00 33.62 1.89
30 31 9.953565 TGCCTATTTACTCAACAGTTAGTATTT 57.046 29.630 0.00 0.00 33.62 1.40
37 38 9.918630 TTACTCAACAGTTAGTATTTACACTCC 57.081 33.333 0.00 0.00 33.62 3.85
38 39 8.191534 ACTCAACAGTTAGTATTTACACTCCT 57.808 34.615 0.00 0.00 0.00 3.69
39 40 8.648693 ACTCAACAGTTAGTATTTACACTCCTT 58.351 33.333 0.00 0.00 0.00 3.36
40 41 8.827177 TCAACAGTTAGTATTTACACTCCTTG 57.173 34.615 0.00 0.00 0.00 3.61
41 42 7.386848 TCAACAGTTAGTATTTACACTCCTTGC 59.613 37.037 0.00 0.00 0.00 4.01
42 43 6.171213 ACAGTTAGTATTTACACTCCTTGCC 58.829 40.000 0.00 0.00 0.00 4.52
43 44 6.013639 ACAGTTAGTATTTACACTCCTTGCCT 60.014 38.462 0.00 0.00 0.00 4.75
44 45 6.535508 CAGTTAGTATTTACACTCCTTGCCTC 59.464 42.308 0.00 0.00 0.00 4.70
45 46 6.212791 AGTTAGTATTTACACTCCTTGCCTCA 59.787 38.462 0.00 0.00 0.00 3.86
46 47 5.091261 AGTATTTACACTCCTTGCCTCAG 57.909 43.478 0.00 0.00 0.00 3.35
47 48 4.532521 AGTATTTACACTCCTTGCCTCAGT 59.467 41.667 0.00 0.00 0.00 3.41
48 49 3.857157 TTTACACTCCTTGCCTCAGTT 57.143 42.857 0.00 0.00 0.00 3.16
49 50 4.967084 TTTACACTCCTTGCCTCAGTTA 57.033 40.909 0.00 0.00 0.00 2.24
50 51 4.537135 TTACACTCCTTGCCTCAGTTAG 57.463 45.455 0.00 0.00 0.00 2.34
62 63 4.974368 CCTCAGTTAGGTAGAGTGACTG 57.026 50.000 0.00 0.00 40.94 3.51
63 64 3.129638 CCTCAGTTAGGTAGAGTGACTGC 59.870 52.174 0.00 0.00 40.94 4.40
64 65 4.013728 CTCAGTTAGGTAGAGTGACTGCT 58.986 47.826 0.00 0.00 38.04 4.24
65 66 3.759086 TCAGTTAGGTAGAGTGACTGCTG 59.241 47.826 0.00 0.00 38.04 4.41
66 67 2.494073 AGTTAGGTAGAGTGACTGCTGC 59.506 50.000 0.00 0.00 0.00 5.25
67 68 2.215942 TAGGTAGAGTGACTGCTGCA 57.784 50.000 0.88 0.88 0.00 4.41
68 69 1.566211 AGGTAGAGTGACTGCTGCAT 58.434 50.000 1.31 0.00 0.00 3.96
69 70 1.480137 AGGTAGAGTGACTGCTGCATC 59.520 52.381 1.31 4.01 0.00 3.91
70 71 1.480137 GGTAGAGTGACTGCTGCATCT 59.520 52.381 1.31 5.31 0.00 2.90
71 72 2.690497 GGTAGAGTGACTGCTGCATCTA 59.310 50.000 1.31 4.22 0.00 1.98
72 73 3.320541 GGTAGAGTGACTGCTGCATCTAT 59.679 47.826 11.72 5.36 0.00 1.98
73 74 3.731652 AGAGTGACTGCTGCATCTATC 57.268 47.619 1.31 6.04 0.00 2.08
74 75 2.364970 AGAGTGACTGCTGCATCTATCC 59.635 50.000 1.31 0.00 0.00 2.59
75 76 1.068281 AGTGACTGCTGCATCTATCCG 59.932 52.381 1.31 0.00 0.00 4.18
76 77 1.114627 TGACTGCTGCATCTATCCGT 58.885 50.000 1.31 0.00 0.00 4.69
77 78 1.067669 TGACTGCTGCATCTATCCGTC 59.932 52.381 1.31 5.89 0.00 4.79
78 79 1.339610 GACTGCTGCATCTATCCGTCT 59.660 52.381 1.31 0.00 0.00 4.18
79 80 1.339610 ACTGCTGCATCTATCCGTCTC 59.660 52.381 1.31 0.00 0.00 3.36
80 81 1.339291 CTGCTGCATCTATCCGTCTCA 59.661 52.381 1.31 0.00 0.00 3.27
81 82 1.339291 TGCTGCATCTATCCGTCTCAG 59.661 52.381 0.00 0.00 0.00 3.35
82 83 1.934399 GCTGCATCTATCCGTCTCAGC 60.934 57.143 0.00 0.00 38.62 4.26
83 84 1.612950 CTGCATCTATCCGTCTCAGCT 59.387 52.381 0.00 0.00 0.00 4.24
84 85 1.339291 TGCATCTATCCGTCTCAGCTG 59.661 52.381 7.63 7.63 0.00 4.24
85 86 1.339610 GCATCTATCCGTCTCAGCTGT 59.660 52.381 14.67 0.00 0.00 4.40
86 87 2.861750 GCATCTATCCGTCTCAGCTGTG 60.862 54.545 14.67 11.96 0.00 3.66
87 88 0.741326 TCTATCCGTCTCAGCTGTGC 59.259 55.000 14.67 6.85 0.00 4.57
88 89 0.593518 CTATCCGTCTCAGCTGTGCG 60.594 60.000 14.67 17.41 0.00 5.34
89 90 1.313091 TATCCGTCTCAGCTGTGCGT 61.313 55.000 14.67 7.16 0.00 5.24
90 91 2.159819 ATCCGTCTCAGCTGTGCGTT 62.160 55.000 14.67 6.56 0.00 4.84
91 92 1.956170 CCGTCTCAGCTGTGCGTTT 60.956 57.895 14.67 0.00 0.00 3.60
92 93 1.488957 CGTCTCAGCTGTGCGTTTC 59.511 57.895 14.67 0.11 0.00 2.78
93 94 1.215014 CGTCTCAGCTGTGCGTTTCA 61.215 55.000 14.67 0.00 0.00 2.69
94 95 0.233332 GTCTCAGCTGTGCGTTTCAC 59.767 55.000 14.67 0.39 45.82 3.18
101 102 4.021650 GTGCGTTTCACGGTCTCA 57.978 55.556 0.00 0.00 42.82 3.27
102 103 2.528797 GTGCGTTTCACGGTCTCAT 58.471 52.632 0.00 0.00 42.82 2.90
103 104 0.438830 GTGCGTTTCACGGTCTCATC 59.561 55.000 0.00 0.00 42.82 2.92
104 105 0.317160 TGCGTTTCACGGTCTCATCT 59.683 50.000 0.00 0.00 42.82 2.90
105 106 1.270094 TGCGTTTCACGGTCTCATCTT 60.270 47.619 0.00 0.00 42.82 2.40
106 107 1.126846 GCGTTTCACGGTCTCATCTTG 59.873 52.381 0.00 0.00 42.82 3.02
107 108 1.126846 CGTTTCACGGTCTCATCTTGC 59.873 52.381 0.00 0.00 38.08 4.01
108 109 2.417719 GTTTCACGGTCTCATCTTGCT 58.582 47.619 0.00 0.00 0.00 3.91
109 110 2.370281 TTCACGGTCTCATCTTGCTC 57.630 50.000 0.00 0.00 0.00 4.26
110 111 1.256812 TCACGGTCTCATCTTGCTCA 58.743 50.000 0.00 0.00 0.00 4.26
111 112 1.827344 TCACGGTCTCATCTTGCTCAT 59.173 47.619 0.00 0.00 0.00 2.90
112 113 2.234661 TCACGGTCTCATCTTGCTCATT 59.765 45.455 0.00 0.00 0.00 2.57
113 114 3.447229 TCACGGTCTCATCTTGCTCATTA 59.553 43.478 0.00 0.00 0.00 1.90
114 115 4.081697 TCACGGTCTCATCTTGCTCATTAA 60.082 41.667 0.00 0.00 0.00 1.40
115 116 4.269603 CACGGTCTCATCTTGCTCATTAAG 59.730 45.833 0.00 0.00 0.00 1.85
116 117 4.160439 ACGGTCTCATCTTGCTCATTAAGA 59.840 41.667 0.00 0.00 38.42 2.10
117 118 5.111989 CGGTCTCATCTTGCTCATTAAGAA 58.888 41.667 0.00 0.00 37.67 2.52
118 119 5.582269 CGGTCTCATCTTGCTCATTAAGAAA 59.418 40.000 0.00 0.00 37.67 2.52
119 120 6.092670 CGGTCTCATCTTGCTCATTAAGAAAA 59.907 38.462 0.00 0.00 37.67 2.29
120 121 7.201679 CGGTCTCATCTTGCTCATTAAGAAAAT 60.202 37.037 0.00 0.00 37.67 1.82
121 122 9.113838 GGTCTCATCTTGCTCATTAAGAAAATA 57.886 33.333 0.00 0.00 37.67 1.40
177 178 9.588774 TTACGACAGAAAAACGAATATCAAAAG 57.411 29.630 0.00 0.00 0.00 2.27
223 224 2.736347 AGACCACCTAGCAACGACTAT 58.264 47.619 0.00 0.00 0.00 2.12
224 225 3.894759 AGACCACCTAGCAACGACTATA 58.105 45.455 0.00 0.00 0.00 1.31
231 232 4.885907 ACCTAGCAACGACTATAAGCACTA 59.114 41.667 0.00 0.00 0.00 2.74
365 410 5.692204 CCGCAGATGAAGAATAACGTAGATT 59.308 40.000 0.00 0.00 0.00 2.40
378 423 9.194271 GAATAACGTAGATTAGAAGGATCCAAC 57.806 37.037 15.82 7.32 0.00 3.77
379 424 6.793505 AACGTAGATTAGAAGGATCCAACT 57.206 37.500 15.82 14.54 0.00 3.16
389 434 2.248248 AGGATCCAACTCGAAGACACA 58.752 47.619 15.82 0.00 0.00 3.72
404 449 5.516696 CGAAGACACATGAATGTAGACGAAT 59.483 40.000 0.00 0.00 39.39 3.34
416 461 5.475273 TGTAGACGAATAACGACGAGATT 57.525 39.130 0.00 0.00 45.77 2.40
430 475 2.093973 ACGAGATTCGAGCAAATCCACT 60.094 45.455 5.38 0.00 43.74 4.00
449 494 5.127519 TCCACTAAAAATAGATCCGTCGGAA 59.872 40.000 19.76 1.60 34.34 4.30
450 495 5.462398 CCACTAAAAATAGATCCGTCGGAAG 59.538 44.000 19.76 10.08 34.34 3.46
469 514 2.111043 ACACCTTCACACGCCCAG 59.889 61.111 0.00 0.00 0.00 4.45
531 577 5.340027 GGGAAGACCTTTATTCCATCCTCAA 60.340 44.000 6.33 0.00 45.70 3.02
562 608 1.069159 TCGTCTCGTCTTTCTGAGCAC 60.069 52.381 0.00 0.00 32.20 4.40
567 613 5.105752 GTCTCGTCTTTCTGAGCACAATAT 58.894 41.667 0.00 0.00 32.20 1.28
571 617 7.981789 TCTCGTCTTTCTGAGCACAATATAAAT 59.018 33.333 0.00 0.00 32.20 1.40
574 621 8.060679 CGTCTTTCTGAGCACAATATAAATCTG 58.939 37.037 0.00 0.00 0.00 2.90
576 623 9.842775 TCTTTCTGAGCACAATATAAATCTGAT 57.157 29.630 0.00 0.00 0.00 2.90
613 660 2.258109 ACTAAAAACGGAGCTCTCCCT 58.742 47.619 14.64 0.00 46.96 4.20
642 690 3.461773 CGAGATCCACCGTGCCCT 61.462 66.667 0.00 0.00 0.00 5.19
643 691 2.187946 GAGATCCACCGTGCCCTG 59.812 66.667 0.00 0.00 0.00 4.45
720 771 8.834749 GTAGGAACCCTAGCTCATTAAATTAG 57.165 38.462 0.00 0.00 36.71 1.73
721 772 7.691993 AGGAACCCTAGCTCATTAAATTAGA 57.308 36.000 0.00 0.00 28.47 2.10
722 773 7.740805 AGGAACCCTAGCTCATTAAATTAGAG 58.259 38.462 0.00 0.00 28.47 2.43
723 774 7.348537 AGGAACCCTAGCTCATTAAATTAGAGT 59.651 37.037 0.00 0.00 28.47 3.24
724 775 8.648693 GGAACCCTAGCTCATTAAATTAGAGTA 58.351 37.037 0.00 0.00 0.00 2.59
725 776 9.478768 GAACCCTAGCTCATTAAATTAGAGTAC 57.521 37.037 0.00 0.00 0.00 2.73
726 777 8.785184 ACCCTAGCTCATTAAATTAGAGTACT 57.215 34.615 0.00 0.00 0.00 2.73
761 812 3.454812 ACTAATCAAGTACTCCGGCCAAT 59.545 43.478 2.24 0.00 36.36 3.16
772 830 4.120331 GGCCAATGGTCTGCACGC 62.120 66.667 0.00 0.00 0.00 5.34
809 869 0.179258 CGCGAGAAGTACGTTTTGCC 60.179 55.000 0.00 0.00 0.00 4.52
810 870 0.863144 GCGAGAAGTACGTTTTGCCA 59.137 50.000 0.00 0.00 0.00 4.92
932 997 2.329614 GGCGCGGCTACAAAAAGGA 61.330 57.895 27.05 0.00 0.00 3.36
935 1004 1.134694 GCGGCTACAAAAAGGAGCG 59.865 57.895 0.00 0.00 37.07 5.03
952 1021 4.918201 GGATCGCCCCAGCTTCCG 62.918 72.222 0.00 0.00 36.60 4.30
969 1038 2.504681 GCAGGAACCAAATGCGCG 60.505 61.111 0.00 0.00 0.00 6.86
970 1039 2.504681 CAGGAACCAAATGCGCGC 60.505 61.111 27.26 27.26 0.00 6.86
971 1040 4.101790 AGGAACCAAATGCGCGCG 62.102 61.111 28.44 28.44 0.00 6.86
989 1058 4.374702 CACGCCAAGCACGCTCAC 62.375 66.667 0.00 0.00 0.00 3.51
1026 1140 4.222589 CGCCGCGGTAGCATGTTG 62.223 66.667 28.70 0.00 45.49 3.33
1027 1141 4.536687 GCCGCGGTAGCATGTTGC 62.537 66.667 28.70 3.63 45.49 4.17
1045 1159 3.353836 GGCAACGAAAGCTGGCGA 61.354 61.111 14.47 0.00 42.86 5.54
1055 1169 0.752009 AAGCTGGCGATAGAGACGGA 60.752 55.000 0.00 0.00 39.76 4.69
1061 1175 0.100682 GCGATAGAGACGGACAGCAA 59.899 55.000 0.00 0.00 39.76 3.91
1098 1212 2.416923 GGAGGGGGAGGAGGAGGAT 61.417 68.421 0.00 0.00 0.00 3.24
1144 1258 0.458716 GTTTCTAGAGCCGCGCTTCT 60.459 55.000 5.56 13.84 39.88 2.85
1272 1386 2.849318 AGTAGTACGTTCCTAGTCCCCT 59.151 50.000 0.00 0.00 0.00 4.79
1273 1387 2.140839 AGTACGTTCCTAGTCCCCTG 57.859 55.000 0.00 0.00 0.00 4.45
1277 1391 1.328430 CGTTCCTAGTCCCCTGGTCC 61.328 65.000 0.00 0.00 0.00 4.46
1279 1394 1.512201 TTCCTAGTCCCCTGGTCCGA 61.512 60.000 0.00 0.00 0.00 4.55
1293 1408 4.458989 CCTGGTCCGATCTTTTGATTTTGA 59.541 41.667 0.00 0.00 39.67 2.69
1296 1411 5.534654 TGGTCCGATCTTTTGATTTTGAGTT 59.465 36.000 0.00 0.00 39.67 3.01
1300 1415 5.117592 CCGATCTTTTGATTTTGAGTTGTGC 59.882 40.000 0.00 0.00 39.67 4.57
1305 1420 2.020720 TGATTTTGAGTTGTGCGGTGT 58.979 42.857 0.00 0.00 0.00 4.16
1308 1423 0.375454 TTTGAGTTGTGCGGTGTTCG 59.625 50.000 0.00 0.00 42.76 3.95
1309 1424 0.741574 TTGAGTTGTGCGGTGTTCGT 60.742 50.000 0.00 0.00 41.72 3.85
1310 1425 1.275657 GAGTTGTGCGGTGTTCGTG 59.724 57.895 0.00 0.00 41.72 4.35
1312 1427 3.931130 TTGTGCGGTGTTCGTGCG 61.931 61.111 0.00 0.00 41.72 5.34
1314 1429 4.643385 GTGCGGTGTTCGTGCGTG 62.643 66.667 0.00 0.00 41.72 5.34
1317 1432 3.995669 CGGTGTTCGTGCGTGGTG 61.996 66.667 0.00 0.00 0.00 4.17
1319 1434 2.466140 GGTGTTCGTGCGTGGTGTT 61.466 57.895 0.00 0.00 0.00 3.32
1320 1435 1.297304 GTGTTCGTGCGTGGTGTTG 60.297 57.895 0.00 0.00 0.00 3.33
1321 1436 2.351888 GTTCGTGCGTGGTGTTGC 60.352 61.111 0.00 0.00 0.00 4.17
1322 1437 3.931130 TTCGTGCGTGGTGTTGCG 61.931 61.111 0.00 0.00 0.00 4.85
1324 1439 4.936248 CGTGCGTGGTGTTGCGTG 62.936 66.667 0.00 0.00 0.00 5.34
1325 1440 3.568743 GTGCGTGGTGTTGCGTGA 61.569 61.111 0.00 0.00 0.00 4.35
1326 1441 2.820037 TGCGTGGTGTTGCGTGAA 60.820 55.556 0.00 0.00 0.00 3.18
1327 1442 2.399356 TGCGTGGTGTTGCGTGAAA 61.399 52.632 0.00 0.00 0.00 2.69
1328 1443 1.654137 GCGTGGTGTTGCGTGAAAG 60.654 57.895 0.00 0.00 0.00 2.62
1329 1444 1.010125 CGTGGTGTTGCGTGAAAGG 60.010 57.895 0.00 0.00 0.00 3.11
1338 1453 2.616969 GCGTGAAAGGCTGAGTTCA 58.383 52.632 0.00 0.00 45.83 3.18
1339 1454 1.160137 GCGTGAAAGGCTGAGTTCAT 58.840 50.000 3.62 0.00 45.83 2.57
1340 1455 2.346803 GCGTGAAAGGCTGAGTTCATA 58.653 47.619 3.62 0.00 45.83 2.15
1341 1456 2.939103 GCGTGAAAGGCTGAGTTCATAT 59.061 45.455 3.62 0.00 45.83 1.78
1342 1457 3.242543 GCGTGAAAGGCTGAGTTCATATG 60.243 47.826 3.62 0.00 45.83 1.78
1343 1458 3.310774 CGTGAAAGGCTGAGTTCATATGG 59.689 47.826 2.13 0.00 36.23 2.74
1344 1459 3.065925 GTGAAAGGCTGAGTTCATATGGC 59.934 47.826 2.13 0.00 36.23 4.40
1345 1460 1.959042 AAGGCTGAGTTCATATGGCG 58.041 50.000 2.13 0.00 0.00 5.69
1346 1461 1.123077 AGGCTGAGTTCATATGGCGA 58.877 50.000 2.13 0.00 0.00 5.54
1347 1462 1.696336 AGGCTGAGTTCATATGGCGAT 59.304 47.619 2.13 0.00 0.00 4.58
1348 1463 2.105477 AGGCTGAGTTCATATGGCGATT 59.895 45.455 2.13 0.00 0.00 3.34
1349 1464 2.481952 GGCTGAGTTCATATGGCGATTC 59.518 50.000 2.13 0.00 0.00 2.52
1350 1465 2.481952 GCTGAGTTCATATGGCGATTCC 59.518 50.000 2.13 0.00 0.00 3.01
1351 1466 3.805108 GCTGAGTTCATATGGCGATTCCT 60.805 47.826 2.13 0.00 35.26 3.36
1352 1467 4.384056 CTGAGTTCATATGGCGATTCCTT 58.616 43.478 2.13 0.00 35.26 3.36
1448 1567 3.952535 CCACTATTTTGGTGCGCTATTC 58.047 45.455 9.73 0.00 33.78 1.75
1450 1569 3.376859 CACTATTTTGGTGCGCTATTCCA 59.623 43.478 9.73 9.47 0.00 3.53
1451 1570 4.013728 ACTATTTTGGTGCGCTATTCCAA 58.986 39.130 9.73 14.94 39.12 3.53
1478 1597 5.717119 ACACTAGTTACTGAACGGTTATGG 58.283 41.667 0.00 0.00 40.76 2.74
1486 1605 5.813080 ACTGAACGGTTATGGCTTAATTC 57.187 39.130 0.00 0.00 0.00 2.17
1487 1606 4.638865 ACTGAACGGTTATGGCTTAATTCC 59.361 41.667 0.00 0.00 0.00 3.01
1488 1607 4.590918 TGAACGGTTATGGCTTAATTCCA 58.409 39.130 0.00 0.00 38.09 3.53
1497 1616 8.088365 GGTTATGGCTTAATTCCATTTATGACC 58.912 37.037 12.81 10.21 41.29 4.02
1504 1623 8.686334 GCTTAATTCCATTTATGACCTGAAAGA 58.314 33.333 0.00 0.00 34.07 2.52
1522 1641 3.842923 CCCGCTCGTCAGCTCCAT 61.843 66.667 0.00 0.00 44.40 3.41
1555 1675 8.891671 AAAAGTCAGTACCGTTATCTAAACAA 57.108 30.769 0.00 0.00 0.00 2.83
1558 1678 8.475331 AGTCAGTACCGTTATCTAAACAATTG 57.525 34.615 3.24 3.24 0.00 2.32
1595 1715 0.034186 GGATGGAGCCCACATGTCAA 60.034 55.000 0.00 0.00 35.80 3.18
1613 1734 7.180051 ACATGTCAACTCTTTCTCCTCTATCTT 59.820 37.037 0.00 0.00 0.00 2.40
1630 1751 2.171840 TCTTCCTTCTCTTCTCCACCG 58.828 52.381 0.00 0.00 0.00 4.94
1660 1781 2.948720 GCCTCTCGTGCTCCCAAGT 61.949 63.158 0.00 0.00 0.00 3.16
1697 1818 5.820423 CCTGTCGGGTATTTGATGAAATGTA 59.180 40.000 0.00 0.00 33.63 2.29
1824 1946 4.016706 GCACACCCTGTACGCCCT 62.017 66.667 0.00 0.00 0.00 5.19
1835 1957 1.105759 GTACGCCCTACCGGAGTGAT 61.106 60.000 9.46 0.00 45.46 3.06
1862 1984 5.680479 AGCGAAAGTTTGAAAAGAAAACG 57.320 34.783 0.00 0.00 41.41 3.60
1934 2056 2.203788 ACGAGTTGGAGGAGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
1975 2097 0.599558 CCACGGTGGAACTAGACGAA 59.400 55.000 22.77 0.00 40.96 3.85
2005 2127 1.533033 CCCAAACCTTGACCCCACC 60.533 63.158 0.00 0.00 0.00 4.61
2065 2187 0.541063 TGTCTTCCCTGTCCACGCTA 60.541 55.000 0.00 0.00 0.00 4.26
2122 2244 1.064825 TCTTGGACTTTCCCACCTCC 58.935 55.000 0.00 0.00 35.03 4.30
2161 2283 3.485346 TTTCCGGGCACACCACTCC 62.485 63.158 0.00 0.00 40.22 3.85
2164 2286 3.953775 CGGGCACACCACTCCCTT 61.954 66.667 0.00 0.00 40.22 3.95
2222 2344 3.003113 GCCGGCTCGTCTAAGGTGT 62.003 63.158 22.15 0.00 0.00 4.16
2227 2349 0.320421 GCTCGTCTAAGGTGTTGCCA 60.320 55.000 0.00 0.00 40.61 4.92
2295 2417 2.435938 GCCTTCATCCGCGGACAA 60.436 61.111 33.75 24.36 0.00 3.18
2307 2429 2.440599 GGACAAGGGTGCCATGGT 59.559 61.111 14.67 0.00 0.00 3.55
2320 2442 2.100584 TGCCATGGTTGTTTTCACTGTC 59.899 45.455 14.67 0.00 0.00 3.51
2335 2457 6.358974 TTCACTGTCTGGATCATGTCTTTA 57.641 37.500 0.00 0.00 0.00 1.85
2342 2464 8.134202 TGTCTGGATCATGTCTTTACTTCTTA 57.866 34.615 0.00 0.00 0.00 2.10
2380 2502 5.539582 TTGTGGATATAGCGTGTTTTGTC 57.460 39.130 0.00 0.00 0.00 3.18
2386 2508 2.624264 GCGTGTTTTGTCGCGACT 59.376 55.556 36.27 0.00 42.79 4.18
2413 2535 4.508128 ATGCTACGCGACCCACCG 62.508 66.667 15.93 0.00 0.00 4.94
2456 2578 2.920912 TCGAGTTCCGGCCCAAGT 60.921 61.111 0.00 0.00 39.14 3.16
2462 2584 3.860930 TTCCGGCCCAAGTGCTTCC 62.861 63.158 0.00 0.00 0.00 3.46
2470 2592 1.576421 CAAGTGCTTCCTGAACCGC 59.424 57.895 0.00 0.00 0.00 5.68
2472 2594 0.465460 AAGTGCTTCCTGAACCGCAA 60.465 50.000 0.00 0.00 33.74 4.85
2515 2637 2.462456 ATGTCAAGAGCGTCATGTGT 57.538 45.000 0.00 0.00 0.00 3.72
2522 2644 2.404215 AGAGCGTCATGTGTTGTGTAC 58.596 47.619 0.00 0.00 0.00 2.90
2528 2650 3.044986 GTCATGTGTTGTGTACGTACGT 58.955 45.455 25.98 25.98 0.00 3.57
2534 2656 3.976942 GTGTTGTGTACGTACGTGATTCT 59.023 43.478 30.25 5.02 0.00 2.40
2547 2669 2.151202 GTGATTCTCCGTTTCTTGGCA 58.849 47.619 0.00 0.00 0.00 4.92
2660 2783 3.708403 TGATGTTCTGCTTGGAGTGAT 57.292 42.857 0.00 0.00 0.00 3.06
2764 2890 7.040755 TGAGATGGTTGTGTTGTTACTTTATGG 60.041 37.037 0.00 0.00 0.00 2.74
2767 2893 7.033530 TGGTTGTGTTGTTACTTTATGGAAG 57.966 36.000 0.00 0.00 41.32 3.46
2802 2928 7.865889 CCTTAGTTAACCAATTTCAGGTGAAAC 59.134 37.037 7.30 0.00 45.55 2.78
2833 2959 0.324614 ACATCAAGGTGCGATCCACA 59.675 50.000 13.95 0.00 46.50 4.17
2879 3005 1.150764 GGCCTACATGTAAGCCCCC 59.849 63.158 28.41 9.31 36.82 5.40
2915 3041 9.842775 TGTCTATTTGATCAGATTAGCAAGATT 57.157 29.630 3.78 0.00 0.00 2.40
2924 3050 6.108687 TCAGATTAGCAAGATTGTACACAGG 58.891 40.000 0.00 0.00 0.00 4.00
2934 3060 7.308589 GCAAGATTGTACACAGGAAACTTATGT 60.309 37.037 0.00 0.00 40.21 2.29
2939 3065 6.350103 TGTACACAGGAAACTTATGTTGTGA 58.650 36.000 14.72 1.33 40.21 3.58
3112 3238 1.434555 TACTTTTGATCGTGCGGGTG 58.565 50.000 0.00 0.00 0.00 4.61
3121 3247 4.622456 GTGCGGGTGGTTGTTGCG 62.622 66.667 0.00 0.00 0.00 4.85
3124 3250 2.671619 CGGGTGGTTGTTGCGGAT 60.672 61.111 0.00 0.00 0.00 4.18
3132 3258 1.453155 GTTGTTGCGGATGAGACCAT 58.547 50.000 0.00 0.00 35.29 3.55
3138 3264 2.107366 TGCGGATGAGACCATGAAGTA 58.893 47.619 0.00 0.00 32.09 2.24
3192 3318 3.380004 ACAACCGTTGATTTGTGTCATGT 59.620 39.130 18.19 0.00 34.61 3.21
3234 3360 0.320073 AAATCGGGCGAAGACAACGA 60.320 50.000 0.00 0.00 37.00 3.85
3292 3418 5.163195 ACTCCCGTTCCATATAGAAAAGCAT 60.163 40.000 0.00 0.00 0.00 3.79
3326 3452 2.555199 AGTATGTCGAGAAGGCAATGC 58.445 47.619 0.00 0.00 38.34 3.56
3384 3510 1.014044 TTCACGAACTGGAGCGCATC 61.014 55.000 11.47 4.01 0.00 3.91
3392 3518 1.336332 ACTGGAGCGCATCGATGATAC 60.336 52.381 29.20 15.97 0.00 2.24
3408 3534 7.139392 TCGATGATACAGAAAATCTTCGGTAG 58.861 38.462 16.37 0.00 42.83 3.18
3416 3542 5.515626 CAGAAAATCTTCGGTAGTAAGGTCG 59.484 44.000 0.00 0.00 36.61 4.79
3419 3545 3.057969 TCTTCGGTAGTAAGGTCGTCA 57.942 47.619 0.00 0.00 0.00 4.35
3480 3606 3.835978 TCGTTCAGTTAATCCTCTCCCAA 59.164 43.478 0.00 0.00 0.00 4.12
3588 3856 7.391554 CCTCTAACTTGAAATCTTGGATCACAA 59.608 37.037 0.00 0.00 37.55 3.33
3590 3858 8.733458 TCTAACTTGAAATCTTGGATCACAATG 58.267 33.333 0.00 0.00 38.65 2.82
3613 3881 3.751479 AACCTTGGCAATTCAACCTTC 57.249 42.857 0.00 0.00 0.00 3.46
3626 3894 2.161855 CAACCTTCTATGCAGGCAACA 58.838 47.619 0.00 0.00 41.41 3.33
3841 4109 4.991776 TCCAGTTGTTTCATGGGATACAA 58.008 39.130 0.00 0.00 40.93 2.41
3881 4149 5.079643 GGAAATATGGCACCCTTGATATGT 58.920 41.667 0.00 0.00 0.00 2.29
3884 4152 7.309194 GGAAATATGGCACCCTTGATATGTAAC 60.309 40.741 0.00 0.00 0.00 2.50
3887 4155 5.290493 TGGCACCCTTGATATGTAACTAG 57.710 43.478 0.00 0.00 0.00 2.57
4035 4303 4.098654 GGAGGATTTCATCGAGTCTCTCAA 59.901 45.833 0.00 0.00 0.00 3.02
4075 4343 2.011222 TCAGGAAAACCACGTGTTGTC 58.989 47.619 15.65 12.62 40.03 3.18
4082 4350 0.874607 ACCACGTGTTGTCGAAGAGC 60.875 55.000 15.65 0.00 36.95 4.09
4087 4355 0.158928 GTGTTGTCGAAGAGCGTTCG 59.841 55.000 15.66 15.66 42.74 3.95
4089 4357 2.362047 TTGTCGAAGAGCGTTCGCG 61.362 57.895 16.65 0.00 41.30 5.87
4203 4472 6.098409 GGGACTTGATAATCTCAGGAGTGTTA 59.902 42.308 0.00 0.00 34.68 2.41
4238 4507 3.851098 AGAAGTCGTGATAAGTTGGAGC 58.149 45.455 0.00 0.00 0.00 4.70
4348 4627 6.204688 CCTTGCATCACACTAGTAGAAAACAA 59.795 38.462 3.59 3.25 0.00 2.83
4430 4710 2.511600 GGCATCAGTCCCGGTTCG 60.512 66.667 0.00 0.00 0.00 3.95
4480 4821 1.067071 GGTTCCAGACACGAACTAGGG 60.067 57.143 0.00 0.00 39.65 3.53
4553 4894 1.602605 CGGGACCAAAGGTTGTCCC 60.603 63.158 16.10 16.10 42.55 4.46
4706 5047 4.978099 CCTCCTATGCACATGAGGTATTT 58.022 43.478 8.07 0.00 39.64 1.40
4757 5098 2.975489 TCTCCTCTTGAAGCTCCTTGTT 59.025 45.455 0.00 0.00 0.00 2.83
4770 5111 3.366781 GCTCCTTGTTCAAGCTCCATTTC 60.367 47.826 7.00 0.00 33.23 2.17
4782 5123 4.681484 AGCTCCATTTCCCTCAAGATTTT 58.319 39.130 0.00 0.00 0.00 1.82
4795 5136 5.770162 CCTCAAGATTTTGTCTAGGTTTGGT 59.230 40.000 0.00 0.00 35.67 3.67
4859 5205 0.769873 GATCTCATCCCCAGCACCAT 59.230 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.918630 GGAGTGTAAATACTAACTGTTGAGTAA 57.081 33.333 2.69 0.00 32.11 2.24
12 13 9.305555 AGGAGTGTAAATACTAACTGTTGAGTA 57.694 33.333 2.69 7.61 32.86 2.59
13 14 8.191534 AGGAGTGTAAATACTAACTGTTGAGT 57.808 34.615 2.69 5.74 0.00 3.41
14 15 8.926710 CAAGGAGTGTAAATACTAACTGTTGAG 58.073 37.037 2.69 0.00 0.00 3.02
15 16 7.386848 GCAAGGAGTGTAAATACTAACTGTTGA 59.613 37.037 2.69 0.00 0.00 3.18
16 17 7.360946 GGCAAGGAGTGTAAATACTAACTGTTG 60.361 40.741 2.69 0.00 0.00 3.33
17 18 6.653740 GGCAAGGAGTGTAAATACTAACTGTT 59.346 38.462 0.00 0.00 0.00 3.16
18 19 6.013639 AGGCAAGGAGTGTAAATACTAACTGT 60.014 38.462 0.00 0.00 0.00 3.55
19 20 6.407202 AGGCAAGGAGTGTAAATACTAACTG 58.593 40.000 0.00 0.00 0.00 3.16
20 21 6.212791 TGAGGCAAGGAGTGTAAATACTAACT 59.787 38.462 0.00 0.00 0.00 2.24
21 22 6.403878 TGAGGCAAGGAGTGTAAATACTAAC 58.596 40.000 0.00 0.00 0.00 2.34
22 23 6.212791 ACTGAGGCAAGGAGTGTAAATACTAA 59.787 38.462 0.00 0.00 0.00 2.24
23 24 5.720041 ACTGAGGCAAGGAGTGTAAATACTA 59.280 40.000 0.00 0.00 0.00 1.82
24 25 4.532521 ACTGAGGCAAGGAGTGTAAATACT 59.467 41.667 0.00 0.00 0.00 2.12
25 26 4.833390 ACTGAGGCAAGGAGTGTAAATAC 58.167 43.478 0.00 0.00 0.00 1.89
26 27 5.499004 AACTGAGGCAAGGAGTGTAAATA 57.501 39.130 0.00 0.00 0.00 1.40
27 28 4.373156 AACTGAGGCAAGGAGTGTAAAT 57.627 40.909 0.00 0.00 0.00 1.40
28 29 3.857157 AACTGAGGCAAGGAGTGTAAA 57.143 42.857 0.00 0.00 0.00 2.01
29 30 3.260884 CCTAACTGAGGCAAGGAGTGTAA 59.739 47.826 0.00 0.00 38.96 2.41
30 31 2.832129 CCTAACTGAGGCAAGGAGTGTA 59.168 50.000 0.00 0.00 38.96 2.90
31 32 1.625818 CCTAACTGAGGCAAGGAGTGT 59.374 52.381 0.00 0.00 38.96 3.55
32 33 2.393271 CCTAACTGAGGCAAGGAGTG 57.607 55.000 0.00 0.00 38.96 3.51
42 43 4.013728 AGCAGTCACTCTACCTAACTGAG 58.986 47.826 5.07 0.00 39.72 3.35
43 44 3.759086 CAGCAGTCACTCTACCTAACTGA 59.241 47.826 5.07 0.00 39.72 3.41
44 45 3.674682 GCAGCAGTCACTCTACCTAACTG 60.675 52.174 0.00 0.00 40.19 3.16
45 46 2.494073 GCAGCAGTCACTCTACCTAACT 59.506 50.000 0.00 0.00 0.00 2.24
46 47 2.231478 TGCAGCAGTCACTCTACCTAAC 59.769 50.000 0.00 0.00 0.00 2.34
47 48 2.525368 TGCAGCAGTCACTCTACCTAA 58.475 47.619 0.00 0.00 0.00 2.69
48 49 2.215942 TGCAGCAGTCACTCTACCTA 57.784 50.000 0.00 0.00 0.00 3.08
49 50 1.480137 GATGCAGCAGTCACTCTACCT 59.520 52.381 0.00 0.00 0.00 3.08
50 51 1.480137 AGATGCAGCAGTCACTCTACC 59.520 52.381 4.07 0.00 0.00 3.18
51 52 2.957491 AGATGCAGCAGTCACTCTAC 57.043 50.000 4.07 0.00 0.00 2.59
52 53 3.571828 GGATAGATGCAGCAGTCACTCTA 59.428 47.826 4.07 3.04 0.00 2.43
53 54 2.364970 GGATAGATGCAGCAGTCACTCT 59.635 50.000 4.07 0.47 0.00 3.24
54 55 2.753296 GGATAGATGCAGCAGTCACTC 58.247 52.381 4.07 0.00 0.00 3.51
55 56 1.068281 CGGATAGATGCAGCAGTCACT 59.932 52.381 4.07 0.47 0.00 3.41
56 57 1.202463 ACGGATAGATGCAGCAGTCAC 60.202 52.381 4.07 0.00 0.00 3.67
57 58 1.067669 GACGGATAGATGCAGCAGTCA 59.932 52.381 4.07 0.00 0.00 3.41
58 59 1.339610 AGACGGATAGATGCAGCAGTC 59.660 52.381 4.07 5.64 0.00 3.51
59 60 1.339610 GAGACGGATAGATGCAGCAGT 59.660 52.381 4.07 0.00 0.00 4.40
60 61 1.339291 TGAGACGGATAGATGCAGCAG 59.661 52.381 4.07 0.00 0.00 4.24
61 62 1.339291 CTGAGACGGATAGATGCAGCA 59.661 52.381 4.07 0.00 0.00 4.41
62 63 1.934399 GCTGAGACGGATAGATGCAGC 60.934 57.143 0.00 0.00 40.15 5.25
63 64 1.612950 AGCTGAGACGGATAGATGCAG 59.387 52.381 0.00 0.00 0.00 4.41
64 65 1.339291 CAGCTGAGACGGATAGATGCA 59.661 52.381 8.42 0.00 0.00 3.96
65 66 1.339610 ACAGCTGAGACGGATAGATGC 59.660 52.381 23.35 0.00 31.42 3.91
66 67 2.861750 GCACAGCTGAGACGGATAGATG 60.862 54.545 23.35 4.33 34.27 2.90
67 68 1.339610 GCACAGCTGAGACGGATAGAT 59.660 52.381 23.35 0.00 0.00 1.98
68 69 0.741326 GCACAGCTGAGACGGATAGA 59.259 55.000 23.35 0.00 0.00 1.98
69 70 0.593518 CGCACAGCTGAGACGGATAG 60.594 60.000 23.35 0.00 0.00 2.08
70 71 1.313091 ACGCACAGCTGAGACGGATA 61.313 55.000 23.35 0.00 0.00 2.59
71 72 2.159819 AACGCACAGCTGAGACGGAT 62.160 55.000 23.35 10.93 0.00 4.18
72 73 2.363711 AAACGCACAGCTGAGACGGA 62.364 55.000 23.35 0.00 0.00 4.69
73 74 1.891060 GAAACGCACAGCTGAGACGG 61.891 60.000 23.35 8.18 0.00 4.79
74 75 1.215014 TGAAACGCACAGCTGAGACG 61.215 55.000 23.35 21.52 0.00 4.18
75 76 0.233332 GTGAAACGCACAGCTGAGAC 59.767 55.000 23.35 8.03 46.91 3.36
76 77 2.605094 GTGAAACGCACAGCTGAGA 58.395 52.632 23.35 0.00 46.91 3.27
88 89 2.413453 GAGCAAGATGAGACCGTGAAAC 59.587 50.000 0.00 0.00 0.00 2.78
89 90 2.037121 TGAGCAAGATGAGACCGTGAAA 59.963 45.455 0.00 0.00 0.00 2.69
90 91 1.618343 TGAGCAAGATGAGACCGTGAA 59.382 47.619 0.00 0.00 0.00 3.18
91 92 1.256812 TGAGCAAGATGAGACCGTGA 58.743 50.000 0.00 0.00 0.00 4.35
92 93 2.306341 ATGAGCAAGATGAGACCGTG 57.694 50.000 0.00 0.00 0.00 4.94
93 94 4.160439 TCTTAATGAGCAAGATGAGACCGT 59.840 41.667 0.00 0.00 0.00 4.83
94 95 4.686972 TCTTAATGAGCAAGATGAGACCG 58.313 43.478 0.00 0.00 0.00 4.79
95 96 6.992063 TTTCTTAATGAGCAAGATGAGACC 57.008 37.500 0.00 0.00 32.27 3.85
130 131 9.489084 TCGTAATTGAAAATGAATAGATCGGAT 57.511 29.630 0.00 0.00 0.00 4.18
154 155 9.588774 TTACTTTTGATATTCGTTTTTCTGTCG 57.411 29.630 0.00 0.00 0.00 4.35
223 224 0.528924 TCGGCTCGCTTTAGTGCTTA 59.471 50.000 0.00 0.00 0.00 3.09
224 225 0.320421 TTCGGCTCGCTTTAGTGCTT 60.320 50.000 0.00 0.00 0.00 3.91
231 232 3.050275 GCACCTTCGGCTCGCTTT 61.050 61.111 0.00 0.00 0.00 3.51
252 264 2.088674 GATGGAGGGACGATGACGGG 62.089 65.000 0.00 0.00 44.46 5.28
323 355 1.470979 CGGCGGTTGCTATTCTAGTGT 60.471 52.381 0.00 0.00 42.25 3.55
327 359 0.529773 CTGCGGCGGTTGCTATTCTA 60.530 55.000 9.78 0.00 42.25 2.10
332 364 2.511373 CATCTGCGGCGGTTGCTA 60.511 61.111 9.78 0.00 42.25 3.49
365 410 4.158025 GTGTCTTCGAGTTGGATCCTTCTA 59.842 45.833 14.23 0.00 0.00 2.10
370 415 2.743636 TGTGTCTTCGAGTTGGATCC 57.256 50.000 4.20 4.20 0.00 3.36
378 423 4.497251 CGTCTACATTCATGTGTCTTCGAG 59.503 45.833 2.50 0.00 41.89 4.04
379 424 4.155280 TCGTCTACATTCATGTGTCTTCGA 59.845 41.667 2.50 3.83 41.89 3.71
389 434 5.813717 TCGTCGTTATTCGTCTACATTCAT 58.186 37.500 0.00 0.00 40.80 2.57
404 449 2.905959 TTGCTCGAATCTCGTCGTTA 57.094 45.000 0.00 0.00 41.35 3.18
416 461 7.226720 GGATCTATTTTTAGTGGATTTGCTCGA 59.773 37.037 0.00 0.00 0.00 4.04
430 475 4.807304 GTGCTTCCGACGGATCTATTTTTA 59.193 41.667 19.12 0.00 0.00 1.52
449 494 2.591715 GGCGTGTGAAGGTGTGCT 60.592 61.111 0.00 0.00 0.00 4.40
450 495 3.660111 GGGCGTGTGAAGGTGTGC 61.660 66.667 0.00 0.00 0.00 4.57
490 535 0.245539 CCCGCTAGACTTCGTTCCAA 59.754 55.000 0.00 0.00 0.00 3.53
498 543 1.939980 AAGGTCTTCCCGCTAGACTT 58.060 50.000 0.00 0.00 41.37 3.01
501 546 3.387050 GGAATAAAGGTCTTCCCGCTAGA 59.613 47.826 0.00 0.00 38.74 2.43
531 577 0.883814 ACGAGACGACGACAACTCCT 60.884 55.000 0.00 0.00 37.03 3.69
536 582 1.600957 AGAAAGACGAGACGACGACAA 59.399 47.619 0.00 0.00 37.03 3.18
685 736 2.186125 GTTCCTACCTTCCGCCCG 59.814 66.667 0.00 0.00 0.00 6.13
686 737 2.588439 GGTTCCTACCTTCCGCCC 59.412 66.667 0.00 0.00 41.53 6.13
699 750 9.478768 GTACTCTAATTTAATGAGCTAGGGTTC 57.521 37.037 0.00 0.00 0.00 3.62
711 762 9.765795 GGCATGTACTGAGTACTCTAATTTAAT 57.234 33.333 23.01 2.91 39.49 1.40
712 763 8.755028 TGGCATGTACTGAGTACTCTAATTTAA 58.245 33.333 23.01 0.63 39.49 1.52
713 764 8.301252 TGGCATGTACTGAGTACTCTAATTTA 57.699 34.615 23.01 6.60 39.49 1.40
714 765 7.182817 TGGCATGTACTGAGTACTCTAATTT 57.817 36.000 23.01 6.07 39.49 1.82
715 766 6.791867 TGGCATGTACTGAGTACTCTAATT 57.208 37.500 23.01 7.70 39.49 1.40
716 767 6.381420 AGTTGGCATGTACTGAGTACTCTAAT 59.619 38.462 23.01 11.12 39.49 1.73
717 768 5.715279 AGTTGGCATGTACTGAGTACTCTAA 59.285 40.000 23.01 12.62 39.49 2.10
718 769 5.262009 AGTTGGCATGTACTGAGTACTCTA 58.738 41.667 23.01 6.11 39.49 2.43
719 770 4.090090 AGTTGGCATGTACTGAGTACTCT 58.910 43.478 23.01 7.13 39.49 3.24
720 771 4.457834 AGTTGGCATGTACTGAGTACTC 57.542 45.455 21.95 16.32 39.49 2.59
721 772 5.995565 TTAGTTGGCATGTACTGAGTACT 57.004 39.130 21.95 0.00 39.49 2.73
722 773 6.338146 TGATTAGTTGGCATGTACTGAGTAC 58.662 40.000 15.57 15.57 39.24 2.73
723 774 6.538945 TGATTAGTTGGCATGTACTGAGTA 57.461 37.500 0.61 0.00 0.00 2.59
724 775 5.420725 TGATTAGTTGGCATGTACTGAGT 57.579 39.130 0.61 0.00 0.00 3.41
725 776 5.877012 ACTTGATTAGTTGGCATGTACTGAG 59.123 40.000 0.61 0.00 31.29 3.35
726 777 5.804639 ACTTGATTAGTTGGCATGTACTGA 58.195 37.500 0.61 0.00 31.29 3.41
761 812 4.687215 GCTGGAGCGTGCAGACCA 62.687 66.667 9.90 0.22 38.14 4.02
772 830 0.179073 CGTGGGTTAGGATGCTGGAG 60.179 60.000 0.00 0.00 0.00 3.86
809 869 1.005748 TGCCTCGTGTGAGCTCTTG 60.006 57.895 16.19 2.05 41.13 3.02
810 870 1.005630 GTGCCTCGTGTGAGCTCTT 60.006 57.895 16.19 0.00 41.13 2.85
935 1004 4.918201 CGGAAGCTGGGGCGATCC 62.918 72.222 0.00 0.00 44.37 3.36
952 1021 2.504681 CGCGCATTTGGTTCCTGC 60.505 61.111 8.75 0.00 0.00 4.85
972 1041 4.374702 GTGAGCGTGCTTGGCGTG 62.375 66.667 0.00 0.00 35.00 5.34
985 1054 1.371758 CCATATCGTCCCGCGTGAG 60.372 63.158 4.92 0.00 42.13 3.51
986 1055 1.176619 ATCCATATCGTCCCGCGTGA 61.177 55.000 4.92 0.00 42.13 4.35
987 1056 0.732880 GATCCATATCGTCCCGCGTG 60.733 60.000 4.92 0.00 42.13 5.34
988 1057 0.894184 AGATCCATATCGTCCCGCGT 60.894 55.000 4.92 0.00 42.13 6.01
989 1058 0.179161 GAGATCCATATCGTCCCGCG 60.179 60.000 0.00 0.00 43.01 6.46
990 1059 0.173708 GGAGATCCATATCGTCCCGC 59.826 60.000 0.00 0.00 37.19 6.13
1017 1115 1.231296 TTCGTTGCCGCAACATGCTA 61.231 50.000 30.37 11.35 43.70 3.49
1021 1135 1.371635 GCTTTCGTTGCCGCAACAT 60.372 52.632 30.37 0.00 43.70 2.71
1022 1136 2.025441 GCTTTCGTTGCCGCAACA 59.975 55.556 30.37 17.55 43.70 3.33
1024 1138 2.331098 CAGCTTTCGTTGCCGCAA 59.669 55.556 0.38 0.38 0.00 4.85
1025 1139 3.659092 CCAGCTTTCGTTGCCGCA 61.659 61.111 0.00 0.00 0.00 5.69
1027 1141 4.741781 CGCCAGCTTTCGTTGCCG 62.742 66.667 0.00 0.00 0.00 5.69
1028 1142 1.366111 TATCGCCAGCTTTCGTTGCC 61.366 55.000 4.54 0.00 0.00 4.52
1029 1143 0.026803 CTATCGCCAGCTTTCGTTGC 59.973 55.000 4.54 0.00 0.00 4.17
1030 1144 1.590238 CTCTATCGCCAGCTTTCGTTG 59.410 52.381 4.54 0.00 0.00 4.10
1031 1145 1.476891 TCTCTATCGCCAGCTTTCGTT 59.523 47.619 4.54 0.00 0.00 3.85
1032 1146 1.103803 TCTCTATCGCCAGCTTTCGT 58.896 50.000 4.54 0.00 0.00 3.85
1033 1147 1.482278 GTCTCTATCGCCAGCTTTCG 58.518 55.000 0.00 0.00 0.00 3.46
1034 1148 1.482278 CGTCTCTATCGCCAGCTTTC 58.518 55.000 0.00 0.00 0.00 2.62
1035 1149 0.103208 CCGTCTCTATCGCCAGCTTT 59.897 55.000 0.00 0.00 0.00 3.51
1036 1150 0.752009 TCCGTCTCTATCGCCAGCTT 60.752 55.000 0.00 0.00 0.00 3.74
1037 1151 1.152943 TCCGTCTCTATCGCCAGCT 60.153 57.895 0.00 0.00 0.00 4.24
1038 1152 1.008309 GTCCGTCTCTATCGCCAGC 60.008 63.158 0.00 0.00 0.00 4.85
1039 1153 0.309302 CTGTCCGTCTCTATCGCCAG 59.691 60.000 0.00 0.00 0.00 4.85
1040 1154 1.725557 GCTGTCCGTCTCTATCGCCA 61.726 60.000 0.00 0.00 0.00 5.69
1041 1155 1.008309 GCTGTCCGTCTCTATCGCC 60.008 63.158 0.00 0.00 0.00 5.54
1045 1159 1.115467 CCCTTGCTGTCCGTCTCTAT 58.885 55.000 0.00 0.00 0.00 1.98
1082 1196 1.630333 TCATCCTCCTCCTCCCCCT 60.630 63.158 0.00 0.00 0.00 4.79
1085 1199 1.841103 GGCTCATCCTCCTCCTCCC 60.841 68.421 0.00 0.00 0.00 4.30
1128 1242 2.801421 CAGAAGCGCGGCTCTAGA 59.199 61.111 8.83 0.00 38.25 2.43
1144 1258 1.736282 CGCACACGATGTACCAGCA 60.736 57.895 0.00 0.00 43.93 4.41
1194 1308 3.936772 GATCCCAGCCCGCAAACCA 62.937 63.158 0.00 0.00 0.00 3.67
1196 1310 3.508840 CGATCCCAGCCCGCAAAC 61.509 66.667 0.00 0.00 0.00 2.93
1197 1311 3.680620 CTCGATCCCAGCCCGCAAA 62.681 63.158 0.00 0.00 0.00 3.68
1252 1366 2.948315 CAGGGGACTAGGAACGTACTAC 59.052 54.545 0.00 0.00 40.21 2.73
1272 1386 5.070001 ACTCAAAATCAAAAGATCGGACCA 58.930 37.500 0.00 0.00 0.00 4.02
1273 1387 5.629079 ACTCAAAATCAAAAGATCGGACC 57.371 39.130 0.00 0.00 0.00 4.46
1277 1391 5.164254 CGCACAACTCAAAATCAAAAGATCG 60.164 40.000 0.00 0.00 0.00 3.69
1279 1394 4.984161 CCGCACAACTCAAAATCAAAAGAT 59.016 37.500 0.00 0.00 0.00 2.40
1293 1408 2.819552 GCACGAACACCGCACAACT 61.820 57.895 0.00 0.00 43.32 3.16
1300 1415 3.995669 CACCACGCACGAACACCG 61.996 66.667 0.00 0.00 45.44 4.94
1305 1420 3.931130 CGCAACACCACGCACGAA 61.931 61.111 0.00 0.00 0.00 3.85
1308 1423 2.585170 TTTCACGCAACACCACGCAC 62.585 55.000 0.00 0.00 0.00 5.34
1309 1424 2.316361 CTTTCACGCAACACCACGCA 62.316 55.000 0.00 0.00 0.00 5.24
1310 1425 1.654137 CTTTCACGCAACACCACGC 60.654 57.895 0.00 0.00 0.00 5.34
1312 1427 1.299089 GCCTTTCACGCAACACCAC 60.299 57.895 0.00 0.00 0.00 4.16
1313 1428 1.453015 AGCCTTTCACGCAACACCA 60.453 52.632 0.00 0.00 0.00 4.17
1314 1429 1.008538 CAGCCTTTCACGCAACACC 60.009 57.895 0.00 0.00 0.00 4.16
1315 1430 0.040958 CTCAGCCTTTCACGCAACAC 60.041 55.000 0.00 0.00 0.00 3.32
1316 1431 0.463654 ACTCAGCCTTTCACGCAACA 60.464 50.000 0.00 0.00 0.00 3.33
1317 1432 0.663153 AACTCAGCCTTTCACGCAAC 59.337 50.000 0.00 0.00 0.00 4.17
1319 1434 0.179059 TGAACTCAGCCTTTCACGCA 60.179 50.000 0.00 0.00 0.00 5.24
1320 1435 1.160137 ATGAACTCAGCCTTTCACGC 58.840 50.000 0.00 0.00 34.61 5.34
1321 1436 3.310774 CCATATGAACTCAGCCTTTCACG 59.689 47.826 3.65 0.00 34.61 4.35
1322 1437 3.065925 GCCATATGAACTCAGCCTTTCAC 59.934 47.826 3.65 0.00 34.61 3.18
1323 1438 3.282021 GCCATATGAACTCAGCCTTTCA 58.718 45.455 3.65 0.00 36.21 2.69
1324 1439 2.289002 CGCCATATGAACTCAGCCTTTC 59.711 50.000 3.65 0.00 0.00 2.62
1325 1440 2.092968 TCGCCATATGAACTCAGCCTTT 60.093 45.455 3.65 0.00 0.00 3.11
1326 1441 1.486310 TCGCCATATGAACTCAGCCTT 59.514 47.619 3.65 0.00 0.00 4.35
1327 1442 1.123077 TCGCCATATGAACTCAGCCT 58.877 50.000 3.65 0.00 0.00 4.58
1328 1443 2.175878 ATCGCCATATGAACTCAGCC 57.824 50.000 3.65 0.00 0.00 4.85
1329 1444 2.481952 GGAATCGCCATATGAACTCAGC 59.518 50.000 3.65 0.00 36.34 4.26
1330 1445 4.000331 AGGAATCGCCATATGAACTCAG 58.000 45.455 3.65 0.00 40.02 3.35
1331 1446 4.129380 CAAGGAATCGCCATATGAACTCA 58.871 43.478 3.65 0.00 40.02 3.41
1332 1447 4.380531 TCAAGGAATCGCCATATGAACTC 58.619 43.478 3.65 0.00 40.02 3.01
1333 1448 4.141620 ACTCAAGGAATCGCCATATGAACT 60.142 41.667 3.65 0.00 40.02 3.01
1334 1449 4.130118 ACTCAAGGAATCGCCATATGAAC 58.870 43.478 3.65 0.00 40.02 3.18
1335 1450 4.422073 ACTCAAGGAATCGCCATATGAA 57.578 40.909 3.65 0.00 40.02 2.57
1336 1451 5.545063 TTACTCAAGGAATCGCCATATGA 57.455 39.130 3.65 0.00 40.02 2.15
1337 1452 6.808008 ATTTACTCAAGGAATCGCCATATG 57.192 37.500 0.00 0.00 40.02 1.78
1338 1453 6.595716 GCTATTTACTCAAGGAATCGCCATAT 59.404 38.462 0.00 0.00 40.02 1.78
1339 1454 5.932303 GCTATTTACTCAAGGAATCGCCATA 59.068 40.000 0.00 0.00 40.02 2.74
1340 1455 4.757149 GCTATTTACTCAAGGAATCGCCAT 59.243 41.667 0.00 0.00 40.02 4.40
1341 1456 4.127171 GCTATTTACTCAAGGAATCGCCA 58.873 43.478 0.00 0.00 40.02 5.69
1342 1457 4.127171 TGCTATTTACTCAAGGAATCGCC 58.873 43.478 0.00 0.00 0.00 5.54
1343 1458 5.734855 TTGCTATTTACTCAAGGAATCGC 57.265 39.130 0.00 0.00 0.00 4.58
1373 1488 5.936187 TGTAACCCTAACCGATAACATGA 57.064 39.130 0.00 0.00 0.00 3.07
1375 1490 7.999450 TTTTTGTAACCCTAACCGATAACAT 57.001 32.000 0.00 0.00 0.00 2.71
1427 1542 3.243068 GGAATAGCGCACCAAAATAGTGG 60.243 47.826 11.47 0.00 44.92 4.00
1451 1570 6.990341 AACCGTTCAGTAACTAGTGTTTTT 57.010 33.333 0.00 0.00 37.59 1.94
1471 1590 8.088365 GGTCATAAATGGAATTAAGCCATAACC 58.912 37.037 11.76 10.62 45.11 2.85
1472 1591 8.860088 AGGTCATAAATGGAATTAAGCCATAAC 58.140 33.333 11.76 1.42 45.11 1.89
1478 1597 8.686334 TCTTTCAGGTCATAAATGGAATTAAGC 58.314 33.333 0.00 0.00 33.67 3.09
1486 1605 3.627577 CGGGTCTTTCAGGTCATAAATGG 59.372 47.826 0.00 0.00 0.00 3.16
1487 1606 3.065371 GCGGGTCTTTCAGGTCATAAATG 59.935 47.826 0.00 0.00 0.00 2.32
1488 1607 3.054361 AGCGGGTCTTTCAGGTCATAAAT 60.054 43.478 0.00 0.00 0.00 1.40
1497 1616 0.734253 CTGACGAGCGGGTCTTTCAG 60.734 60.000 16.37 16.37 37.81 3.02
1533 1653 8.308931 TCAATTGTTTAGATAACGGTACTGACT 58.691 33.333 9.17 4.92 0.00 3.41
1538 1658 8.928733 TCAACTCAATTGTTTAGATAACGGTAC 58.071 33.333 5.13 0.00 39.54 3.34
1539 1659 8.928733 GTCAACTCAATTGTTTAGATAACGGTA 58.071 33.333 5.13 0.00 39.54 4.02
1540 1660 7.094933 GGTCAACTCAATTGTTTAGATAACGGT 60.095 37.037 5.13 0.00 39.54 4.83
1541 1661 7.241376 GGTCAACTCAATTGTTTAGATAACGG 58.759 38.462 5.13 0.00 39.54 4.44
1555 1675 6.045072 TCCAGTTATAACGGTCAACTCAAT 57.955 37.500 19.24 0.00 30.20 2.57
1558 1678 4.809426 CCATCCAGTTATAACGGTCAACTC 59.191 45.833 19.24 0.00 30.20 3.01
1595 1715 6.741724 AGAAGGAAGATAGAGGAGAAAGAGT 58.258 40.000 0.00 0.00 0.00 3.24
1613 1734 1.258445 GGCGGTGGAGAAGAGAAGGA 61.258 60.000 0.00 0.00 0.00 3.36
1639 1760 2.442272 GGGAGCACGAGAGGCCTA 60.442 66.667 4.42 0.00 0.00 3.93
1824 1946 3.198409 TCGCTACTAATCACTCCGGTA 57.802 47.619 0.00 0.00 0.00 4.02
1835 1957 9.281075 GTTTTCTTTTCAAACTTTCGCTACTAA 57.719 29.630 0.00 0.00 32.32 2.24
1954 2076 0.316204 CGTCTAGTTCCACCGTGGTT 59.684 55.000 17.32 7.24 39.03 3.67
1975 2097 1.351017 AGGTTTGGGACGATGATGTGT 59.649 47.619 0.00 0.00 0.00 3.72
2005 2127 1.063006 CGGCTCAATCAACATGGCG 59.937 57.895 0.00 0.00 39.98 5.69
2065 2187 3.009115 CGGGAGTGGTCCATGGGT 61.009 66.667 13.02 0.00 46.07 4.51
2130 2252 3.752339 GGAAAGCAAGGGCCGCAG 61.752 66.667 6.19 0.00 42.56 5.18
2149 2271 2.282462 CCAAGGGAGTGGTGTGCC 60.282 66.667 0.00 0.00 33.63 5.01
2161 2283 2.276740 GAGGTGCCATCCCCAAGG 59.723 66.667 0.00 0.00 0.00 3.61
2245 2367 3.636300 ACAAGGCTTTTATTGTGCTGACA 59.364 39.130 0.00 0.00 38.19 3.58
2278 2400 2.435938 TTGTCCGCGGATGAAGGC 60.436 61.111 33.58 17.93 0.00 4.35
2292 2414 0.398381 AACAACCATGGCACCCTTGT 60.398 50.000 13.04 11.78 0.00 3.16
2295 2417 1.047801 GAAAACAACCATGGCACCCT 58.952 50.000 13.04 0.00 0.00 4.34
2303 2425 3.897239 TCCAGACAGTGAAAACAACCAT 58.103 40.909 0.00 0.00 0.00 3.55
2307 2429 5.132502 ACATGATCCAGACAGTGAAAACAA 58.867 37.500 0.00 0.00 0.00 2.83
2320 2442 9.388506 ACAATAAGAAGTAAAGACATGATCCAG 57.611 33.333 0.00 0.00 0.00 3.86
2357 2479 5.220586 CGACAAAACACGCTATATCCACAAT 60.221 40.000 0.00 0.00 0.00 2.71
2370 2492 1.717728 GCAGTCGCGACAAAACACG 60.718 57.895 37.85 18.44 0.00 4.49
2413 2535 0.594796 CAGCACCTTTGAACAACGCC 60.595 55.000 0.00 0.00 0.00 5.68
2414 2536 0.380378 TCAGCACCTTTGAACAACGC 59.620 50.000 0.00 0.00 0.00 4.84
2456 2578 0.465460 AGTTTGCGGTTCAGGAAGCA 60.465 50.000 11.29 2.43 38.62 3.91
2462 2584 0.886490 AGGCTCAGTTTGCGGTTCAG 60.886 55.000 0.00 0.00 0.00 3.02
2470 2592 0.318699 TGTCGTCGAGGCTCAGTTTG 60.319 55.000 15.95 0.00 0.00 2.93
2472 2594 0.171455 GATGTCGTCGAGGCTCAGTT 59.829 55.000 15.95 0.00 0.00 3.16
2515 2637 3.667695 CGGAGAATCACGTACGTACACAA 60.668 47.826 22.34 9.61 36.25 3.33
2522 2644 2.860062 AGAAACGGAGAATCACGTACG 58.140 47.619 15.01 15.01 40.23 3.67
2528 2650 2.038426 TCTGCCAAGAAACGGAGAATCA 59.962 45.455 0.00 0.00 36.25 2.57
2534 2656 4.843728 AGAATATTCTGCCAAGAAACGGA 58.156 39.130 17.26 0.00 45.44 4.69
2619 2742 2.526304 TGACAGTCTGCAAGGTACAC 57.474 50.000 1.31 0.00 0.00 2.90
2660 2783 1.230635 GCGAGACAAGGCAGCAGAAA 61.231 55.000 0.00 0.00 0.00 2.52
2738 2864 7.040755 CCATAAAGTAACAACACAACCATCTCA 60.041 37.037 0.00 0.00 0.00 3.27
2739 2865 7.174253 TCCATAAAGTAACAACACAACCATCTC 59.826 37.037 0.00 0.00 0.00 2.75
2740 2866 7.001674 TCCATAAAGTAACAACACAACCATCT 58.998 34.615 0.00 0.00 0.00 2.90
2764 2890 4.575236 GGTTAACTAAGGCTATGGCACTTC 59.425 45.833 2.58 0.00 40.87 3.01
2767 2893 3.881220 TGGTTAACTAAGGCTATGGCAC 58.119 45.455 2.58 0.00 40.87 5.01
2768 2894 4.577988 TTGGTTAACTAAGGCTATGGCA 57.422 40.909 2.58 0.00 40.87 4.92
2770 2896 7.201821 CCTGAAATTGGTTAACTAAGGCTATGG 60.202 40.741 10.33 4.77 0.00 2.74
2802 2928 1.067635 CCTTGATGTTCCTTTTGCCGG 60.068 52.381 0.00 0.00 0.00 6.13
2879 3005 4.562789 TGATCAAATAGACAACTTCGAGCG 59.437 41.667 0.00 0.00 0.00 5.03
2884 3010 9.102757 TGCTAATCTGATCAAATAGACAACTTC 57.897 33.333 11.36 0.00 0.00 3.01
2885 3011 9.453572 TTGCTAATCTGATCAAATAGACAACTT 57.546 29.630 11.36 0.00 0.00 2.66
2887 3013 9.102757 TCTTGCTAATCTGATCAAATAGACAAC 57.897 33.333 11.36 0.00 0.00 3.32
2915 3041 6.350103 TCACAACATAAGTTTCCTGTGTACA 58.650 36.000 0.00 0.00 35.37 2.90
2995 3121 2.028658 GTCAGTGCTCAGGTGAATCTCA 60.029 50.000 0.00 0.00 0.00 3.27
3001 3127 1.341080 TCATGTCAGTGCTCAGGTGA 58.659 50.000 0.00 0.00 0.00 4.02
3070 3196 9.516788 AGTAAGTTCCTTCTTTTACCCCTATAT 57.483 33.333 0.00 0.00 0.00 0.86
3085 3211 4.084013 CGCACGATCAAAAGTAAGTTCCTT 60.084 41.667 0.00 0.00 0.00 3.36
3104 3230 4.622456 CGCAACAACCACCCGCAC 62.622 66.667 0.00 0.00 0.00 5.34
3107 3233 2.671619 ATCCGCAACAACCACCCG 60.672 61.111 0.00 0.00 0.00 5.28
3112 3238 0.605319 TGGTCTCATCCGCAACAACC 60.605 55.000 0.00 0.00 0.00 3.77
3121 3247 7.630242 TGAAAAATACTTCATGGTCTCATCC 57.370 36.000 0.00 0.00 30.31 3.51
3163 3289 0.387112 AATCAACGGTTGTGCATGCG 60.387 50.000 19.47 0.00 0.00 4.73
3173 3299 2.287547 GCACATGACACAAATCAACGGT 60.288 45.455 0.00 0.00 30.82 4.83
3176 3302 3.976942 GTCTGCACATGACACAAATCAAC 59.023 43.478 0.00 0.00 34.80 3.18
3192 3318 2.102578 TCATGCTAGCTAGTGTCTGCA 58.897 47.619 21.62 13.47 34.88 4.41
3224 3350 1.521423 CCACTTCACGTCGTTGTCTTC 59.479 52.381 0.00 0.00 0.00 2.87
3226 3352 0.249322 CCCACTTCACGTCGTTGTCT 60.249 55.000 0.00 0.00 0.00 3.41
3234 3360 1.882352 GCTGATTTCCCCACTTCACGT 60.882 52.381 0.00 0.00 0.00 4.49
3292 3418 2.753452 GACATACTTGAGAGGGTCGTCA 59.247 50.000 0.00 0.00 0.00 4.35
3326 3452 0.320374 TTCTTCCTGTGTGCTACCCG 59.680 55.000 0.00 0.00 0.00 5.28
3384 3510 6.918569 ACTACCGAAGATTTTCTGTATCATCG 59.081 38.462 1.57 0.00 40.76 3.84
3392 3518 5.515626 CGACCTTACTACCGAAGATTTTCTG 59.484 44.000 0.00 0.00 0.00 3.02
3408 3534 5.869888 AGATCAAAATGACTGACGACCTTAC 59.130 40.000 0.00 0.00 0.00 2.34
3448 3574 7.097834 AGGATTAACTGAACGAGTCCTTAAAG 58.902 38.462 0.00 0.00 31.73 1.85
3455 3581 4.440387 GGGAGAGGATTAACTGAACGAGTC 60.440 50.000 0.00 0.00 31.73 3.36
3456 3582 3.447944 GGGAGAGGATTAACTGAACGAGT 59.552 47.826 0.00 0.00 35.94 4.18
3465 3591 5.133941 GGAATTCCTTGGGAGAGGATTAAC 58.866 45.833 17.73 0.00 44.98 2.01
3483 3619 4.700213 CACGTTAACCATTGAGAGGGAATT 59.300 41.667 0.00 0.00 0.00 2.17
3543 3811 2.840651 AGGCCTAACATTGAGTAGCACT 59.159 45.455 1.29 0.00 0.00 4.40
3544 3812 3.118592 AGAGGCCTAACATTGAGTAGCAC 60.119 47.826 4.42 0.00 0.00 4.40
3545 3813 3.107601 AGAGGCCTAACATTGAGTAGCA 58.892 45.455 4.42 0.00 0.00 3.49
3573 3841 7.781324 AGGTTTACATTGTGATCCAAGATTT 57.219 32.000 10.34 0.00 36.25 2.17
3588 3856 4.592778 AGGTTGAATTGCCAAGGTTTACAT 59.407 37.500 0.00 0.00 0.00 2.29
3590 3858 4.600692 AGGTTGAATTGCCAAGGTTTAC 57.399 40.909 0.00 0.00 0.00 2.01
3613 3881 1.669779 GAGAAGCTGTTGCCTGCATAG 59.330 52.381 0.00 0.00 40.80 2.23
3626 3894 3.390639 ACAAGGCATAGCATAGAGAAGCT 59.609 43.478 0.00 0.00 44.55 3.74
3854 4122 1.607225 AGGGTGCCATATTTCCAGGA 58.393 50.000 0.00 0.00 0.00 3.86
3934 4202 8.707938 TGACAATGTTCATGTAACTCTGATAG 57.292 34.615 0.00 0.00 38.99 2.08
4035 4303 3.708631 TGAAGCTGCCTCTCTAATTAGCT 59.291 43.478 7.67 0.00 42.76 3.32
4075 4343 4.771356 TCCCGCGAACGCTCTTCG 62.771 66.667 8.23 8.59 44.06 3.79
4082 4350 0.921347 CTATGTTCTTCCCGCGAACG 59.079 55.000 8.23 0.00 42.73 3.95
4087 4355 2.158957 TCCATGTCTATGTTCTTCCCGC 60.159 50.000 0.00 0.00 32.21 6.13
4089 4357 4.651503 TCTCTCCATGTCTATGTTCTTCCC 59.348 45.833 0.00 0.00 32.21 3.97
4203 4472 6.452242 TCACGACTTCTTATGTAACATGTGT 58.548 36.000 0.00 0.00 0.00 3.72
4238 4507 0.964860 TGCATGATTGGTCAACCCCG 60.965 55.000 0.00 0.00 38.01 5.73
4348 4627 0.829182 CCAAGCCTCAACCAAAGCCT 60.829 55.000 0.00 0.00 0.00 4.58
4364 4643 2.423660 CGGGATTAATGCCCTTACCCAA 60.424 50.000 19.28 0.00 43.72 4.12
4424 4704 4.760047 CCCTGGCCTCACGAACCG 62.760 72.222 3.32 0.00 0.00 4.44
4508 4849 1.065709 GCCATCAACCGGGACTAAAGA 60.066 52.381 6.32 0.00 0.00 2.52
4553 4894 2.289819 TGTGGCTAAAACCGGGACTAAG 60.290 50.000 6.32 0.00 0.00 2.18
4703 5044 1.410153 GGCTCGGGCATTTCATCAAAT 59.590 47.619 10.74 0.00 40.87 2.32
4706 5047 1.031571 GTGGCTCGGGCATTTCATCA 61.032 55.000 10.74 0.00 40.92 3.07
4757 5098 2.644299 TCTTGAGGGAAATGGAGCTTGA 59.356 45.455 0.00 0.00 0.00 3.02
4770 5111 5.183904 CCAAACCTAGACAAAATCTTGAGGG 59.816 44.000 0.00 0.00 37.46 4.30
4782 5123 2.367567 GACAGACCACCAAACCTAGACA 59.632 50.000 0.00 0.00 0.00 3.41
4859 5205 0.033504 GAACAAGAGGCTCACCACGA 59.966 55.000 18.26 0.00 39.06 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.