Multiple sequence alignment - TraesCS3A01G266000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G266000 chr3A 100.000 2586 0 0 1 2586 490431733 490429148 0.000000e+00 4776
1 TraesCS3A01G266000 chr3A 92.141 738 36 7 1868 2584 729887579 729888315 0.000000e+00 1022
2 TraesCS3A01G266000 chr3A 93.720 414 19 2 2177 2584 40248943 40249355 4.730000e-172 614
3 TraesCS3A01G266000 chr3A 93.220 413 28 0 1 413 113632785 113632373 2.200000e-170 608
4 TraesCS3A01G266000 chr3A 93.220 413 28 0 1 413 228502819 228502407 2.200000e-170 608
5 TraesCS3A01G266000 chr3A 85.757 337 44 4 404 736 705127025 705127361 1.140000e-93 353
6 TraesCS3A01G266000 chr5A 91.034 2186 153 21 413 2584 590663656 590661500 0.000000e+00 2911
7 TraesCS3A01G266000 chr5A 89.867 2181 180 23 411 2584 536362163 536364309 0.000000e+00 2765
8 TraesCS3A01G266000 chr5A 89.699 2126 157 29 472 2583 24054546 24052469 0.000000e+00 2656
9 TraesCS3A01G266000 chr5A 93.947 413 25 0 1 413 450623555 450623143 2.180000e-175 625
10 TraesCS3A01G266000 chr5A 92.978 413 28 1 1 413 292032211 292032622 3.680000e-168 601
11 TraesCS3A01G266000 chr3D 94.836 1801 77 9 790 2583 515672391 515674182 0.000000e+00 2796
12 TraesCS3A01G266000 chr3D 90.087 1957 166 17 412 2361 382523087 382521152 0.000000e+00 2514
13 TraesCS3A01G266000 chr2A 89.333 2203 199 23 406 2586 754614086 754616274 0.000000e+00 2734
14 TraesCS3A01G266000 chr2A 89.945 1820 161 15 413 2224 743065567 743067372 0.000000e+00 2327
15 TraesCS3A01G266000 chr2A 90.695 1698 108 26 931 2584 603724625 603726316 0.000000e+00 2215
16 TraesCS3A01G266000 chr2A 86.134 1363 138 29 413 1764 682196845 682198167 0.000000e+00 1423
17 TraesCS3A01G266000 chr2A 93.462 413 27 0 1 413 360796428 360796016 4.730000e-172 614
18 TraesCS3A01G266000 chr2A 87.311 528 46 7 411 934 603689299 603689809 3.710000e-163 584
19 TraesCS3A01G266000 chr2A 89.668 271 22 3 2319 2584 451825630 451825361 8.860000e-90 340
20 TraesCS3A01G266000 chr3B 90.498 2010 151 28 604 2584 123038613 123036615 0.000000e+00 2617
21 TraesCS3A01G266000 chr3B 92.942 1261 67 12 1340 2584 30182241 30180987 0.000000e+00 1816
22 TraesCS3A01G266000 chr3B 88.620 703 57 14 1794 2490 425467843 425468528 0.000000e+00 833
23 TraesCS3A01G266000 chr3B 83.951 405 41 13 468 864 782506395 782506783 1.460000e-97 366
24 TraesCS3A01G266000 chr3B 89.928 278 27 1 413 689 618438690 618438413 8.800000e-95 357
25 TraesCS3A01G266000 chr3B 91.810 232 18 1 2353 2584 581954230 581954460 3.210000e-84 322
26 TraesCS3A01G266000 chr3B 91.304 230 17 2 2357 2584 41357425 41357197 6.950000e-81 311
27 TraesCS3A01G266000 chr3B 90.426 188 16 2 413 599 123055600 123055414 1.990000e-61 246
28 TraesCS3A01G266000 chr3B 86.127 173 24 0 411 583 656736772 656736600 1.220000e-43 187
29 TraesCS3A01G266000 chr6A 91.121 1892 144 21 710 2584 158239161 158241045 0.000000e+00 2542
30 TraesCS3A01G266000 chr4B 87.854 2190 227 27 411 2586 425291628 425293792 0.000000e+00 2534
31 TraesCS3A01G266000 chr6B 90.431 1787 146 15 804 2584 636474577 636476344 0.000000e+00 2329
32 TraesCS3A01G266000 chr7A 93.720 414 25 1 1 413 419687064 419686651 1.020000e-173 619
33 TraesCS3A01G266000 chr1A 93.220 413 28 0 1 413 190101306 190101718 2.200000e-170 608
34 TraesCS3A01G266000 chr1A 92.978 413 29 0 1 413 257318376 257318788 1.020000e-168 603
35 TraesCS3A01G266000 chr1A 92.736 413 30 0 1 413 190197352 190197764 4.760000e-167 597


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G266000 chr3A 490429148 490431733 2585 True 4776 4776 100.000 1 2586 1 chr3A.!!$R3 2585
1 TraesCS3A01G266000 chr3A 729887579 729888315 736 False 1022 1022 92.141 1868 2584 1 chr3A.!!$F3 716
2 TraesCS3A01G266000 chr5A 590661500 590663656 2156 True 2911 2911 91.034 413 2584 1 chr5A.!!$R3 2171
3 TraesCS3A01G266000 chr5A 536362163 536364309 2146 False 2765 2765 89.867 411 2584 1 chr5A.!!$F2 2173
4 TraesCS3A01G266000 chr5A 24052469 24054546 2077 True 2656 2656 89.699 472 2583 1 chr5A.!!$R1 2111
5 TraesCS3A01G266000 chr3D 515672391 515674182 1791 False 2796 2796 94.836 790 2583 1 chr3D.!!$F1 1793
6 TraesCS3A01G266000 chr3D 382521152 382523087 1935 True 2514 2514 90.087 412 2361 1 chr3D.!!$R1 1949
7 TraesCS3A01G266000 chr2A 754614086 754616274 2188 False 2734 2734 89.333 406 2586 1 chr2A.!!$F5 2180
8 TraesCS3A01G266000 chr2A 743065567 743067372 1805 False 2327 2327 89.945 413 2224 1 chr2A.!!$F4 1811
9 TraesCS3A01G266000 chr2A 603724625 603726316 1691 False 2215 2215 90.695 931 2584 1 chr2A.!!$F2 1653
10 TraesCS3A01G266000 chr2A 682196845 682198167 1322 False 1423 1423 86.134 413 1764 1 chr2A.!!$F3 1351
11 TraesCS3A01G266000 chr2A 603689299 603689809 510 False 584 584 87.311 411 934 1 chr2A.!!$F1 523
12 TraesCS3A01G266000 chr3B 123036615 123038613 1998 True 2617 2617 90.498 604 2584 1 chr3B.!!$R3 1980
13 TraesCS3A01G266000 chr3B 30180987 30182241 1254 True 1816 1816 92.942 1340 2584 1 chr3B.!!$R1 1244
14 TraesCS3A01G266000 chr3B 425467843 425468528 685 False 833 833 88.620 1794 2490 1 chr3B.!!$F1 696
15 TraesCS3A01G266000 chr6A 158239161 158241045 1884 False 2542 2542 91.121 710 2584 1 chr6A.!!$F1 1874
16 TraesCS3A01G266000 chr4B 425291628 425293792 2164 False 2534 2534 87.854 411 2586 1 chr4B.!!$F1 2175
17 TraesCS3A01G266000 chr6B 636474577 636476344 1767 False 2329 2329 90.431 804 2584 1 chr6B.!!$F1 1780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.033504 TCCTTGAGTGGACGACAAGC 59.966 55.0 0.0 0.0 39.41 4.01 F
363 364 0.034863 TGCTGAGCATGATGAAGCCA 60.035 50.0 1.4 0.0 31.71 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1420 1473 0.183971 TCTCTCCTCTAAGCTCCCCG 59.816 60.0 0.00 0.0 0.00 5.73 R
2123 2179 0.541063 TCCTCCTCAGGCACGTGTTA 60.541 55.0 18.38 0.0 40.12 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.730487 GCCATTGCTGGACTGACT 57.270 55.556 0.00 0.00 46.37 3.41
34 35 2.952714 GCCATTGCTGGACTGACTT 58.047 52.632 0.00 0.00 46.37 3.01
35 36 0.524862 GCCATTGCTGGACTGACTTG 59.475 55.000 0.00 0.00 46.37 3.16
36 37 1.901591 CCATTGCTGGACTGACTTGT 58.098 50.000 0.00 0.00 46.37 3.16
37 38 1.808945 CCATTGCTGGACTGACTTGTC 59.191 52.381 0.00 0.00 46.37 3.18
38 39 2.551721 CCATTGCTGGACTGACTTGTCT 60.552 50.000 2.35 0.00 46.37 3.41
39 40 2.245159 TTGCTGGACTGACTTGTCTG 57.755 50.000 6.18 6.18 37.16 3.51
40 41 0.394192 TGCTGGACTGACTTGTCTGG 59.606 55.000 11.31 3.57 37.16 3.86
41 42 0.681733 GCTGGACTGACTTGTCTGGA 59.318 55.000 11.31 0.00 37.16 3.86
42 43 1.070758 GCTGGACTGACTTGTCTGGAA 59.929 52.381 11.31 0.00 37.16 3.53
43 44 2.869636 GCTGGACTGACTTGTCTGGAAG 60.870 54.545 11.31 7.14 37.16 3.46
44 45 2.630098 CTGGACTGACTTGTCTGGAAGA 59.370 50.000 11.31 0.00 43.69 2.87
56 57 3.674528 TCTGGAAGAAGCTCTTGACTG 57.325 47.619 3.55 2.31 42.31 3.51
57 58 2.075338 CTGGAAGAAGCTCTTGACTGC 58.925 52.381 3.55 0.00 36.73 4.40
58 59 1.696336 TGGAAGAAGCTCTTGACTGCT 59.304 47.619 3.55 0.00 36.73 4.24
64 65 2.747396 AGCTCTTGACTGCTTCAGAG 57.253 50.000 0.29 0.00 35.86 3.35
65 66 1.338011 AGCTCTTGACTGCTTCAGAGC 60.338 52.381 20.09 20.09 45.93 4.09
73 74 3.132801 GCTTCAGAGCTGCTGGCC 61.133 66.667 7.01 0.00 45.65 5.36
74 75 2.669849 CTTCAGAGCTGCTGGCCT 59.330 61.111 7.01 0.00 44.98 5.19
75 76 1.002379 CTTCAGAGCTGCTGGCCTT 60.002 57.895 7.01 0.00 44.98 4.35
76 77 1.002868 TTCAGAGCTGCTGGCCTTC 60.003 57.895 7.01 0.00 44.98 3.46
77 78 1.486997 TTCAGAGCTGCTGGCCTTCT 61.487 55.000 7.01 0.00 44.98 2.85
78 79 0.615827 TCAGAGCTGCTGGCCTTCTA 60.616 55.000 7.01 0.00 44.98 2.10
79 80 0.461693 CAGAGCTGCTGGCCTTCTAC 60.462 60.000 7.01 0.00 43.05 2.59
80 81 0.906756 AGAGCTGCTGGCCTTCTACA 60.907 55.000 7.01 0.00 43.05 2.74
81 82 0.461693 GAGCTGCTGGCCTTCTACAG 60.462 60.000 7.01 5.50 43.05 2.74
82 83 1.197430 AGCTGCTGGCCTTCTACAGT 61.197 55.000 3.32 0.00 43.05 3.55
83 84 0.322008 GCTGCTGGCCTTCTACAGTT 60.322 55.000 3.32 0.00 37.07 3.16
84 85 1.884067 GCTGCTGGCCTTCTACAGTTT 60.884 52.381 3.32 0.00 37.07 2.66
85 86 1.808945 CTGCTGGCCTTCTACAGTTTG 59.191 52.381 3.32 0.00 37.07 2.93
86 87 1.142870 TGCTGGCCTTCTACAGTTTGT 59.857 47.619 3.32 0.00 37.07 2.83
87 88 1.537202 GCTGGCCTTCTACAGTTTGTG 59.463 52.381 3.32 0.00 37.07 3.33
88 89 2.810400 GCTGGCCTTCTACAGTTTGTGA 60.810 50.000 3.32 0.00 37.07 3.58
89 90 3.679389 CTGGCCTTCTACAGTTTGTGAT 58.321 45.455 3.32 0.00 0.00 3.06
90 91 4.074970 CTGGCCTTCTACAGTTTGTGATT 58.925 43.478 3.32 0.00 0.00 2.57
91 92 3.820467 TGGCCTTCTACAGTTTGTGATTG 59.180 43.478 3.32 0.00 0.00 2.67
92 93 4.072131 GGCCTTCTACAGTTTGTGATTGA 58.928 43.478 0.00 0.00 0.00 2.57
93 94 4.702131 GGCCTTCTACAGTTTGTGATTGAT 59.298 41.667 0.00 0.00 0.00 2.57
94 95 5.880332 GGCCTTCTACAGTTTGTGATTGATA 59.120 40.000 0.00 0.00 0.00 2.15
95 96 6.374333 GGCCTTCTACAGTTTGTGATTGATAA 59.626 38.462 0.00 0.00 0.00 1.75
96 97 7.094377 GGCCTTCTACAGTTTGTGATTGATAAA 60.094 37.037 0.00 0.00 0.00 1.40
97 98 7.965107 GCCTTCTACAGTTTGTGATTGATAAAG 59.035 37.037 0.00 0.00 0.00 1.85
98 99 9.219603 CCTTCTACAGTTTGTGATTGATAAAGA 57.780 33.333 0.00 0.00 0.00 2.52
100 101 8.777865 TCTACAGTTTGTGATTGATAAAGAGG 57.222 34.615 0.00 0.00 0.00 3.69
101 102 8.593679 TCTACAGTTTGTGATTGATAAAGAGGA 58.406 33.333 0.00 0.00 0.00 3.71
102 103 9.388506 CTACAGTTTGTGATTGATAAAGAGGAT 57.611 33.333 0.00 0.00 0.00 3.24
103 104 8.641498 ACAGTTTGTGATTGATAAAGAGGATT 57.359 30.769 0.00 0.00 0.00 3.01
104 105 8.517878 ACAGTTTGTGATTGATAAAGAGGATTG 58.482 33.333 0.00 0.00 0.00 2.67
105 106 7.972277 CAGTTTGTGATTGATAAAGAGGATTGG 59.028 37.037 0.00 0.00 0.00 3.16
106 107 7.890127 AGTTTGTGATTGATAAAGAGGATTGGA 59.110 33.333 0.00 0.00 0.00 3.53
107 108 8.522830 GTTTGTGATTGATAAAGAGGATTGGAA 58.477 33.333 0.00 0.00 0.00 3.53
108 109 8.827832 TTGTGATTGATAAAGAGGATTGGAAT 57.172 30.769 0.00 0.00 0.00 3.01
109 110 8.229253 TGTGATTGATAAAGAGGATTGGAATG 57.771 34.615 0.00 0.00 0.00 2.67
110 111 8.054572 TGTGATTGATAAAGAGGATTGGAATGA 58.945 33.333 0.00 0.00 0.00 2.57
111 112 8.906867 GTGATTGATAAAGAGGATTGGAATGAA 58.093 33.333 0.00 0.00 0.00 2.57
112 113 9.128404 TGATTGATAAAGAGGATTGGAATGAAG 57.872 33.333 0.00 0.00 0.00 3.02
113 114 9.347240 GATTGATAAAGAGGATTGGAATGAAGA 57.653 33.333 0.00 0.00 0.00 2.87
114 115 8.743085 TTGATAAAGAGGATTGGAATGAAGAG 57.257 34.615 0.00 0.00 0.00 2.85
115 116 6.769822 TGATAAAGAGGATTGGAATGAAGAGC 59.230 38.462 0.00 0.00 0.00 4.09
116 117 4.858965 AAGAGGATTGGAATGAAGAGCT 57.141 40.909 0.00 0.00 0.00 4.09
117 118 4.858965 AGAGGATTGGAATGAAGAGCTT 57.141 40.909 0.00 0.00 0.00 3.74
118 119 4.779696 AGAGGATTGGAATGAAGAGCTTC 58.220 43.478 3.32 3.32 39.91 3.86
119 120 4.474287 AGAGGATTGGAATGAAGAGCTTCT 59.526 41.667 11.16 0.00 40.14 2.85
120 121 4.525024 AGGATTGGAATGAAGAGCTTCTG 58.475 43.478 11.16 0.00 40.14 3.02
121 122 3.066481 GGATTGGAATGAAGAGCTTCTGC 59.934 47.826 11.16 0.00 40.14 4.26
134 135 2.728922 GCTTCTGCTGCAATTCTATGC 58.271 47.619 3.02 0.00 46.58 3.14
145 146 5.300969 GCAATTCTATGCAACTCTTCACA 57.699 39.130 0.00 0.00 45.70 3.58
146 147 5.888105 GCAATTCTATGCAACTCTTCACAT 58.112 37.500 0.00 0.00 45.70 3.21
147 148 6.327934 GCAATTCTATGCAACTCTTCACATT 58.672 36.000 0.00 0.00 45.70 2.71
148 149 6.471519 GCAATTCTATGCAACTCTTCACATTC 59.528 38.462 0.00 0.00 45.70 2.67
149 150 5.784750 TTCTATGCAACTCTTCACATTCG 57.215 39.130 0.00 0.00 0.00 3.34
150 151 2.907910 ATGCAACTCTTCACATTCGC 57.092 45.000 0.00 0.00 0.00 4.70
151 152 1.882912 TGCAACTCTTCACATTCGCT 58.117 45.000 0.00 0.00 0.00 4.93
152 153 1.532437 TGCAACTCTTCACATTCGCTG 59.468 47.619 0.00 0.00 0.00 5.18
153 154 1.727213 GCAACTCTTCACATTCGCTGC 60.727 52.381 0.00 0.00 0.00 5.25
154 155 1.802960 CAACTCTTCACATTCGCTGCT 59.197 47.619 0.00 0.00 0.00 4.24
155 156 2.995939 CAACTCTTCACATTCGCTGCTA 59.004 45.455 0.00 0.00 0.00 3.49
156 157 2.611518 ACTCTTCACATTCGCTGCTAC 58.388 47.619 0.00 0.00 0.00 3.58
157 158 2.232452 ACTCTTCACATTCGCTGCTACT 59.768 45.455 0.00 0.00 0.00 2.57
158 159 3.444034 ACTCTTCACATTCGCTGCTACTA 59.556 43.478 0.00 0.00 0.00 1.82
159 160 3.770666 TCTTCACATTCGCTGCTACTAC 58.229 45.455 0.00 0.00 0.00 2.73
160 161 3.192633 TCTTCACATTCGCTGCTACTACA 59.807 43.478 0.00 0.00 0.00 2.74
161 162 3.150848 TCACATTCGCTGCTACTACAG 57.849 47.619 0.00 0.00 40.80 2.74
162 163 2.159240 TCACATTCGCTGCTACTACAGG 60.159 50.000 0.00 0.00 38.16 4.00
168 169 0.315568 GCTGCTACTACAGGGATCCG 59.684 60.000 5.45 0.00 38.16 4.18
169 170 1.982660 CTGCTACTACAGGGATCCGA 58.017 55.000 5.45 0.00 33.85 4.55
170 171 2.307768 CTGCTACTACAGGGATCCGAA 58.692 52.381 5.45 0.00 33.85 4.30
171 172 2.294791 CTGCTACTACAGGGATCCGAAG 59.705 54.545 5.45 2.80 33.85 3.79
172 173 2.092049 TGCTACTACAGGGATCCGAAGA 60.092 50.000 5.45 0.00 0.00 2.87
173 174 2.293955 GCTACTACAGGGATCCGAAGAC 59.706 54.545 5.45 0.00 0.00 3.01
174 175 2.830651 ACTACAGGGATCCGAAGACT 57.169 50.000 5.45 0.00 0.00 3.24
175 176 3.103080 ACTACAGGGATCCGAAGACTT 57.897 47.619 5.45 0.00 0.00 3.01
176 177 2.761208 ACTACAGGGATCCGAAGACTTG 59.239 50.000 5.45 0.00 0.00 3.16
177 178 0.905357 ACAGGGATCCGAAGACTTGG 59.095 55.000 5.45 0.00 0.00 3.61
178 179 0.179000 CAGGGATCCGAAGACTTGGG 59.821 60.000 9.87 9.87 0.00 4.12
179 180 0.252742 AGGGATCCGAAGACTTGGGT 60.253 55.000 15.09 2.98 0.00 4.51
180 181 0.178301 GGGATCCGAAGACTTGGGTC 59.822 60.000 15.09 11.10 42.41 4.46
181 182 0.178301 GGATCCGAAGACTTGGGTCC 59.822 60.000 15.09 15.51 43.05 4.46
182 183 1.196012 GATCCGAAGACTTGGGTCCT 58.804 55.000 15.09 2.93 43.05 3.85
183 184 1.555533 GATCCGAAGACTTGGGTCCTT 59.444 52.381 15.09 0.87 43.05 3.36
184 185 0.685097 TCCGAAGACTTGGGTCCTTG 59.315 55.000 15.09 0.00 43.05 3.61
185 186 0.685097 CCGAAGACTTGGGTCCTTGA 59.315 55.000 8.04 0.00 43.05 3.02
186 187 1.338200 CCGAAGACTTGGGTCCTTGAG 60.338 57.143 8.04 0.00 43.05 3.02
187 188 1.344763 CGAAGACTTGGGTCCTTGAGT 59.655 52.381 0.00 0.00 43.05 3.41
188 189 2.772287 GAAGACTTGGGTCCTTGAGTG 58.228 52.381 0.00 0.00 43.05 3.51
189 190 1.059913 AGACTTGGGTCCTTGAGTGG 58.940 55.000 0.00 0.00 43.05 4.00
190 191 1.056660 GACTTGGGTCCTTGAGTGGA 58.943 55.000 0.00 0.00 36.53 4.02
196 197 3.980583 GTCCTTGAGTGGACGACAA 57.019 52.632 0.00 0.00 45.69 3.18
197 198 1.784525 GTCCTTGAGTGGACGACAAG 58.215 55.000 0.00 0.00 45.69 3.16
198 199 0.033504 TCCTTGAGTGGACGACAAGC 59.966 55.000 0.00 0.00 39.41 4.01
200 201 0.318699 CTTGAGTGGACGACAAGCGA 60.319 55.000 0.00 0.00 44.57 4.93
201 202 0.317160 TTGAGTGGACGACAAGCGAT 59.683 50.000 0.00 0.00 44.57 4.58
202 203 0.388520 TGAGTGGACGACAAGCGATG 60.389 55.000 0.00 0.00 44.57 3.84
204 205 0.885879 AGTGGACGACAAGCGATGTA 59.114 50.000 0.00 0.00 44.12 2.29
205 206 0.989890 GTGGACGACAAGCGATGTAC 59.010 55.000 0.00 0.00 44.12 2.90
206 207 0.599060 TGGACGACAAGCGATGTACA 59.401 50.000 0.00 0.00 44.12 2.90
207 208 0.989890 GGACGACAAGCGATGTACAC 59.010 55.000 0.00 0.00 44.12 2.90
208 209 0.989890 GACGACAAGCGATGTACACC 59.010 55.000 0.00 0.00 44.12 4.16
209 210 0.315886 ACGACAAGCGATGTACACCA 59.684 50.000 0.00 0.00 44.12 4.17
210 211 1.067142 ACGACAAGCGATGTACACCAT 60.067 47.619 0.00 0.00 44.12 3.55
211 212 1.324435 CGACAAGCGATGTACACCATG 59.676 52.381 0.00 0.00 44.12 3.66
212 213 2.616960 GACAAGCGATGTACACCATGA 58.383 47.619 0.00 0.00 44.12 3.07
213 214 3.000041 GACAAGCGATGTACACCATGAA 59.000 45.455 0.00 0.00 44.12 2.57
214 215 3.002791 ACAAGCGATGTACACCATGAAG 58.997 45.455 0.00 0.00 41.63 3.02
215 216 1.656652 AGCGATGTACACCATGAAGC 58.343 50.000 0.00 0.00 32.56 3.86
216 217 0.657840 GCGATGTACACCATGAAGCC 59.342 55.000 0.00 0.00 32.56 4.35
217 218 2.011548 GCGATGTACACCATGAAGCCA 61.012 52.381 0.00 0.00 32.56 4.75
218 219 2.355197 CGATGTACACCATGAAGCCAA 58.645 47.619 0.00 0.00 32.56 4.52
219 220 2.746904 CGATGTACACCATGAAGCCAAA 59.253 45.455 0.00 0.00 32.56 3.28
220 221 3.181507 CGATGTACACCATGAAGCCAAAG 60.182 47.826 0.00 0.00 32.56 2.77
221 222 1.885887 TGTACACCATGAAGCCAAAGC 59.114 47.619 0.00 0.00 40.32 3.51
222 223 1.202348 GTACACCATGAAGCCAAAGCC 59.798 52.381 0.00 0.00 41.25 4.35
223 224 1.187567 ACACCATGAAGCCAAAGCCC 61.188 55.000 0.00 0.00 41.25 5.19
224 225 1.155859 ACCATGAAGCCAAAGCCCA 59.844 52.632 0.00 0.00 41.25 5.36
225 226 0.471591 ACCATGAAGCCAAAGCCCAA 60.472 50.000 0.00 0.00 41.25 4.12
226 227 0.248289 CCATGAAGCCAAAGCCCAAG 59.752 55.000 0.00 0.00 41.25 3.61
227 228 1.259609 CATGAAGCCAAAGCCCAAGA 58.740 50.000 0.00 0.00 41.25 3.02
228 229 1.829222 CATGAAGCCAAAGCCCAAGAT 59.171 47.619 0.00 0.00 41.25 2.40
229 230 1.259609 TGAAGCCAAAGCCCAAGATG 58.740 50.000 0.00 0.00 41.25 2.90
230 231 1.260544 GAAGCCAAAGCCCAAGATGT 58.739 50.000 0.00 0.00 41.25 3.06
231 232 1.203287 GAAGCCAAAGCCCAAGATGTC 59.797 52.381 0.00 0.00 41.25 3.06
232 233 0.112995 AGCCAAAGCCCAAGATGTCA 59.887 50.000 0.00 0.00 41.25 3.58
233 234 1.188863 GCCAAAGCCCAAGATGTCAT 58.811 50.000 0.00 0.00 0.00 3.06
234 235 1.551883 GCCAAAGCCCAAGATGTCATT 59.448 47.619 0.00 0.00 0.00 2.57
235 236 2.675889 GCCAAAGCCCAAGATGTCATTG 60.676 50.000 0.00 0.00 0.00 2.82
236 237 2.827322 CCAAAGCCCAAGATGTCATTGA 59.173 45.455 0.00 0.00 0.00 2.57
237 238 3.119245 CCAAAGCCCAAGATGTCATTGAG 60.119 47.826 0.00 0.00 0.00 3.02
238 239 1.760192 AGCCCAAGATGTCATTGAGC 58.240 50.000 0.00 0.00 32.12 4.26
239 240 1.284198 AGCCCAAGATGTCATTGAGCT 59.716 47.619 0.00 0.00 36.96 4.09
240 241 2.097825 GCCCAAGATGTCATTGAGCTT 58.902 47.619 0.00 0.00 29.64 3.74
241 242 3.054139 AGCCCAAGATGTCATTGAGCTTA 60.054 43.478 0.00 0.00 38.41 3.09
242 243 3.065925 GCCCAAGATGTCATTGAGCTTAC 59.934 47.826 0.00 0.00 29.64 2.34
243 244 4.521146 CCCAAGATGTCATTGAGCTTACT 58.479 43.478 0.00 0.00 0.00 2.24
244 245 4.334759 CCCAAGATGTCATTGAGCTTACTG 59.665 45.833 0.00 0.00 0.00 2.74
245 246 4.201891 CCAAGATGTCATTGAGCTTACTGC 60.202 45.833 0.00 0.00 43.29 4.40
246 247 3.539604 AGATGTCATTGAGCTTACTGCC 58.460 45.455 0.00 0.00 44.23 4.85
247 248 2.113860 TGTCATTGAGCTTACTGCCC 57.886 50.000 0.00 0.00 44.23 5.36
248 249 1.630369 TGTCATTGAGCTTACTGCCCT 59.370 47.619 0.00 0.00 44.23 5.19
249 250 2.012673 GTCATTGAGCTTACTGCCCTG 58.987 52.381 0.00 0.00 44.23 4.45
250 251 0.737219 CATTGAGCTTACTGCCCTGC 59.263 55.000 0.00 0.00 44.23 4.85
251 252 0.394899 ATTGAGCTTACTGCCCTGCC 60.395 55.000 0.00 0.00 44.23 4.85
252 253 2.124529 GAGCTTACTGCCCTGCCC 60.125 66.667 0.00 0.00 44.23 5.36
253 254 2.935481 AGCTTACTGCCCTGCCCA 60.935 61.111 0.00 0.00 44.23 5.36
254 255 2.751837 GCTTACTGCCCTGCCCAC 60.752 66.667 0.00 0.00 35.15 4.61
255 256 3.081554 CTTACTGCCCTGCCCACT 58.918 61.111 0.00 0.00 0.00 4.00
256 257 1.078143 CTTACTGCCCTGCCCACTC 60.078 63.158 0.00 0.00 0.00 3.51
257 258 2.543067 CTTACTGCCCTGCCCACTCC 62.543 65.000 0.00 0.00 0.00 3.85
258 259 3.562681 TACTGCCCTGCCCACTCCT 62.563 63.158 0.00 0.00 0.00 3.69
259 260 2.176202 TACTGCCCTGCCCACTCCTA 62.176 60.000 0.00 0.00 0.00 2.94
260 261 2.688666 TGCCCTGCCCACTCCTAG 60.689 66.667 0.00 0.00 0.00 3.02
261 262 2.689034 GCCCTGCCCACTCCTAGT 60.689 66.667 0.00 0.00 0.00 2.57
262 263 3.036429 GCCCTGCCCACTCCTAGTG 62.036 68.421 0.00 0.00 45.53 2.74
275 276 5.662674 ACTCCTAGTGAACACTATGAACC 57.337 43.478 13.85 0.00 42.44 3.62
276 277 5.084519 ACTCCTAGTGAACACTATGAACCA 58.915 41.667 13.85 0.00 42.44 3.67
277 278 5.186021 ACTCCTAGTGAACACTATGAACCAG 59.814 44.000 13.85 8.24 42.44 4.00
278 279 4.466370 TCCTAGTGAACACTATGAACCAGG 59.534 45.833 13.85 11.68 42.44 4.45
279 280 4.223032 CCTAGTGAACACTATGAACCAGGT 59.777 45.833 13.85 0.00 42.44 4.00
280 281 4.706842 AGTGAACACTATGAACCAGGTT 57.293 40.909 3.79 3.79 40.43 3.50
281 282 4.389374 AGTGAACACTATGAACCAGGTTG 58.611 43.478 10.47 0.00 40.43 3.77
282 283 4.134563 GTGAACACTATGAACCAGGTTGT 58.865 43.478 10.47 0.00 0.00 3.32
283 284 4.213482 GTGAACACTATGAACCAGGTTGTC 59.787 45.833 10.47 0.00 0.00 3.18
284 285 4.141597 TGAACACTATGAACCAGGTTGTCA 60.142 41.667 10.47 2.40 0.00 3.58
285 286 4.008074 ACACTATGAACCAGGTTGTCAG 57.992 45.455 10.47 5.86 0.00 3.51
286 287 2.744202 CACTATGAACCAGGTTGTCAGC 59.256 50.000 10.47 0.00 0.00 4.26
287 288 2.639839 ACTATGAACCAGGTTGTCAGCT 59.360 45.455 10.47 0.00 0.00 4.24
288 289 1.901591 ATGAACCAGGTTGTCAGCTG 58.098 50.000 10.47 7.63 46.52 4.24
289 290 0.819259 TGAACCAGGTTGTCAGCTGC 60.819 55.000 10.47 4.92 45.74 5.25
290 291 0.819259 GAACCAGGTTGTCAGCTGCA 60.819 55.000 10.47 7.85 45.74 4.41
291 292 1.103398 AACCAGGTTGTCAGCTGCAC 61.103 55.000 9.47 9.02 45.74 4.57
292 293 2.263741 CCAGGTTGTCAGCTGCACC 61.264 63.158 17.48 17.48 45.74 5.01
293 294 1.526686 CAGGTTGTCAGCTGCACCA 60.527 57.895 23.71 12.58 41.53 4.17
294 295 1.102809 CAGGTTGTCAGCTGCACCAA 61.103 55.000 23.71 16.71 41.53 3.67
295 296 0.395586 AGGTTGTCAGCTGCACCAAA 60.396 50.000 23.71 7.13 0.00 3.28
296 297 0.459489 GGTTGTCAGCTGCACCAAAA 59.541 50.000 19.34 0.00 0.00 2.44
297 298 1.069049 GGTTGTCAGCTGCACCAAAAT 59.931 47.619 19.34 0.00 0.00 1.82
298 299 2.129607 GTTGTCAGCTGCACCAAAATG 58.870 47.619 9.47 0.00 0.00 2.32
299 300 1.401761 TGTCAGCTGCACCAAAATGT 58.598 45.000 9.47 0.00 0.00 2.71
300 301 1.755959 TGTCAGCTGCACCAAAATGTT 59.244 42.857 9.47 0.00 0.00 2.71
301 302 2.168106 TGTCAGCTGCACCAAAATGTTT 59.832 40.909 9.47 0.00 0.00 2.83
302 303 3.197265 GTCAGCTGCACCAAAATGTTTT 58.803 40.909 9.47 0.00 0.00 2.43
303 304 3.001533 GTCAGCTGCACCAAAATGTTTTG 59.998 43.478 9.47 10.48 45.34 2.44
316 317 6.661669 CAAAATGTTTTGGAAAGCATCTTCC 58.338 36.000 9.75 5.52 44.54 3.46
328 329 2.102925 AGCATCTTCCAGAAGCTAGAGC 59.897 50.000 1.70 0.00 46.13 4.09
329 330 2.806382 GCATCTTCCAGAAGCTAGAGCC 60.806 54.545 2.38 0.00 43.38 4.70
330 331 2.238084 TCTTCCAGAAGCTAGAGCCA 57.762 50.000 2.38 0.00 43.38 4.75
331 332 2.540383 TCTTCCAGAAGCTAGAGCCAA 58.460 47.619 2.38 0.00 43.38 4.52
332 333 2.906389 TCTTCCAGAAGCTAGAGCCAAA 59.094 45.455 2.38 0.00 43.38 3.28
333 334 2.770164 TCCAGAAGCTAGAGCCAAAC 57.230 50.000 0.00 0.00 43.38 2.93
334 335 1.977854 TCCAGAAGCTAGAGCCAAACA 59.022 47.619 0.00 0.00 43.38 2.83
335 336 2.573462 TCCAGAAGCTAGAGCCAAACAT 59.427 45.455 0.00 0.00 43.38 2.71
336 337 2.681848 CCAGAAGCTAGAGCCAAACATG 59.318 50.000 0.00 0.00 43.38 3.21
337 338 3.603532 CAGAAGCTAGAGCCAAACATGA 58.396 45.455 0.00 0.00 43.38 3.07
338 339 3.622163 CAGAAGCTAGAGCCAAACATGAG 59.378 47.826 0.00 0.00 43.38 2.90
339 340 2.035530 AGCTAGAGCCAAACATGAGC 57.964 50.000 0.00 0.00 43.38 4.26
340 341 1.020437 GCTAGAGCCAAACATGAGCC 58.980 55.000 0.00 0.00 34.31 4.70
341 342 1.679944 GCTAGAGCCAAACATGAGCCA 60.680 52.381 0.00 0.00 34.31 4.75
342 343 2.715046 CTAGAGCCAAACATGAGCCAA 58.285 47.619 0.00 0.00 0.00 4.52
343 344 1.999648 AGAGCCAAACATGAGCCAAA 58.000 45.000 0.00 0.00 0.00 3.28
344 345 2.532843 AGAGCCAAACATGAGCCAAAT 58.467 42.857 0.00 0.00 0.00 2.32
345 346 2.232941 AGAGCCAAACATGAGCCAAATG 59.767 45.455 0.00 0.00 0.00 2.32
346 347 1.081094 GCCAAACATGAGCCAAATGC 58.919 50.000 0.00 0.00 41.71 3.56
362 363 2.789842 TGCTGAGCATGATGAAGCC 58.210 52.632 1.40 0.00 31.71 4.35
363 364 0.034863 TGCTGAGCATGATGAAGCCA 60.035 50.000 1.40 0.00 31.71 4.75
364 365 0.381089 GCTGAGCATGATGAAGCCAC 59.619 55.000 0.00 0.00 0.00 5.01
365 366 2.017623 GCTGAGCATGATGAAGCCACT 61.018 52.381 0.00 0.00 0.00 4.00
366 367 2.744166 GCTGAGCATGATGAAGCCACTA 60.744 50.000 0.00 0.00 0.00 2.74
367 368 2.871022 CTGAGCATGATGAAGCCACTAC 59.129 50.000 0.00 0.00 0.00 2.73
368 369 2.216898 GAGCATGATGAAGCCACTACC 58.783 52.381 0.00 0.00 0.00 3.18
369 370 1.561076 AGCATGATGAAGCCACTACCA 59.439 47.619 0.00 0.00 0.00 3.25
370 371 1.672881 GCATGATGAAGCCACTACCAC 59.327 52.381 0.00 0.00 0.00 4.16
371 372 2.940971 GCATGATGAAGCCACTACCACA 60.941 50.000 0.00 0.00 0.00 4.17
372 373 3.346315 CATGATGAAGCCACTACCACAA 58.654 45.455 0.00 0.00 0.00 3.33
373 374 3.057969 TGATGAAGCCACTACCACAAG 57.942 47.619 0.00 0.00 0.00 3.16
374 375 2.637382 TGATGAAGCCACTACCACAAGA 59.363 45.455 0.00 0.00 0.00 3.02
375 376 3.264193 TGATGAAGCCACTACCACAAGAT 59.736 43.478 0.00 0.00 0.00 2.40
376 377 3.057969 TGAAGCCACTACCACAAGATG 57.942 47.619 0.00 0.00 0.00 2.90
377 378 1.740025 GAAGCCACTACCACAAGATGC 59.260 52.381 0.00 0.00 0.00 3.91
378 379 0.987294 AGCCACTACCACAAGATGCT 59.013 50.000 0.00 0.00 0.00 3.79
379 380 1.089920 GCCACTACCACAAGATGCTG 58.910 55.000 0.00 0.00 0.00 4.41
380 381 1.339055 GCCACTACCACAAGATGCTGA 60.339 52.381 0.00 0.00 0.00 4.26
381 382 2.875672 GCCACTACCACAAGATGCTGAA 60.876 50.000 0.00 0.00 0.00 3.02
382 383 3.614092 CCACTACCACAAGATGCTGAAT 58.386 45.455 0.00 0.00 0.00 2.57
383 384 4.769688 CCACTACCACAAGATGCTGAATA 58.230 43.478 0.00 0.00 0.00 1.75
384 385 5.371526 CCACTACCACAAGATGCTGAATAT 58.628 41.667 0.00 0.00 0.00 1.28
385 386 5.468072 CCACTACCACAAGATGCTGAATATC 59.532 44.000 0.00 0.00 0.00 1.63
386 387 5.468072 CACTACCACAAGATGCTGAATATCC 59.532 44.000 0.00 0.00 0.00 2.59
387 388 4.508551 ACCACAAGATGCTGAATATCCA 57.491 40.909 0.00 0.00 0.00 3.41
388 389 4.858850 ACCACAAGATGCTGAATATCCAA 58.141 39.130 0.00 0.00 0.00 3.53
389 390 5.263599 ACCACAAGATGCTGAATATCCAAA 58.736 37.500 0.00 0.00 0.00 3.28
390 391 5.359009 ACCACAAGATGCTGAATATCCAAAG 59.641 40.000 0.00 0.00 0.00 2.77
391 392 5.221185 CCACAAGATGCTGAATATCCAAAGG 60.221 44.000 0.00 0.00 0.00 3.11
392 393 5.591472 CACAAGATGCTGAATATCCAAAGGA 59.409 40.000 0.00 0.00 35.55 3.36
393 394 5.826737 ACAAGATGCTGAATATCCAAAGGAG 59.173 40.000 0.00 0.00 34.05 3.69
394 395 5.643421 AGATGCTGAATATCCAAAGGAGT 57.357 39.130 0.00 0.00 34.05 3.85
395 396 6.011122 AGATGCTGAATATCCAAAGGAGTT 57.989 37.500 0.00 0.00 34.05 3.01
396 397 6.060788 AGATGCTGAATATCCAAAGGAGTTC 58.939 40.000 6.89 6.89 34.05 3.01
397 398 5.441718 TGCTGAATATCCAAAGGAGTTCT 57.558 39.130 12.32 0.00 34.05 3.01
398 399 5.819991 TGCTGAATATCCAAAGGAGTTCTT 58.180 37.500 12.32 0.00 34.05 2.52
399 400 6.248433 TGCTGAATATCCAAAGGAGTTCTTT 58.752 36.000 12.32 0.00 45.85 2.52
409 410 5.836821 AAAGGAGTTCTTTGTTGAAGACC 57.163 39.130 0.00 0.00 43.90 3.85
433 434 2.279186 GTGTTTGGTTGCCCGCAC 60.279 61.111 0.00 0.00 0.00 5.34
705 715 3.515502 CCTTTCACTCACTCACCCATAGA 59.484 47.826 0.00 0.00 0.00 1.98
723 738 0.402121 GACAGTGCCCCCTTTCTTCT 59.598 55.000 0.00 0.00 0.00 2.85
725 740 0.322906 CAGTGCCCCCTTTCTTCTCC 60.323 60.000 0.00 0.00 0.00 3.71
764 780 1.869754 GCGGCTGCGATTTCAGATCTA 60.870 52.381 0.00 0.00 36.19 1.98
874 917 4.828296 GTGCCATGGCTCCCCCTG 62.828 72.222 35.53 0.00 42.51 4.45
959 1007 2.158798 GGCCTTTAAGCTAGGTGTAGGG 60.159 54.545 15.16 8.97 35.13 3.53
1153 1203 0.687757 CCGGGAACAGGAGAGGATCA 60.688 60.000 0.00 0.00 37.82 2.92
1220 1270 6.475504 TGTGGATGCTTAGAATGAAAAGAGA 58.524 36.000 0.00 0.00 0.00 3.10
1385 1436 3.647113 AGGAGATCAATGGAGACCATCTG 59.353 47.826 3.69 5.49 44.40 2.90
1386 1437 3.244491 GGAGATCAATGGAGACCATCTGG 60.244 52.174 3.69 0.00 44.40 3.86
1387 1438 2.106166 AGATCAATGGAGACCATCTGGC 59.894 50.000 3.69 0.00 44.40 4.85
1388 1439 0.548031 TCAATGGAGACCATCTGGCC 59.452 55.000 0.00 0.00 44.40 5.36
1390 1441 0.549950 AATGGAGACCATCTGGCCAG 59.450 55.000 27.87 27.87 44.40 4.85
1394 1445 0.463620 GAGACCATCTGGCCAGACTC 59.536 60.000 37.39 30.97 40.75 3.36
1395 1446 0.980231 AGACCATCTGGCCAGACTCC 60.980 60.000 37.39 24.23 40.75 3.85
1396 1447 1.229625 ACCATCTGGCCAGACTCCA 60.230 57.895 37.39 16.10 40.75 3.86
1397 1448 1.222936 CCATCTGGCCAGACTCCAC 59.777 63.158 37.39 0.00 40.75 4.02
1545 1599 6.866480 ACAATATACACTTTTCATGGCTTGG 58.134 36.000 0.09 0.00 0.00 3.61
1580 1634 4.697828 TGTTCAAGTTCAGCACTAACACAA 59.302 37.500 0.00 0.00 31.58 3.33
1786 1840 2.896168 CATGATGCAAACATTCCCACC 58.104 47.619 6.96 0.00 36.35 4.61
2047 2103 2.573369 CTGGATCAGAAGCCATTCCAG 58.427 52.381 3.11 3.11 45.32 3.86
2069 2125 4.532521 AGCCATACTCCACTCAAGTTAAGT 59.467 41.667 1.21 1.21 0.00 2.24
2123 2179 2.562296 TCCTCTAGTGGGGCTTTGATT 58.438 47.619 10.89 0.00 0.00 2.57
2153 2209 0.992695 TGAGGAGGAAGAGGTCGAGA 59.007 55.000 0.00 0.00 0.00 4.04
2205 2261 2.761767 TGGAGGCATTTGACAATGATGG 59.238 45.455 0.00 0.00 42.35 3.51
2317 2384 2.737783 CAGCAGAAGCACAGAAGAAGAG 59.262 50.000 0.00 0.00 45.49 2.85
2383 2533 2.478292 ACACCGATGAACTATCCCCTT 58.522 47.619 0.00 0.00 31.82 3.95
2484 2636 4.216257 GGCACTATGTTCAGATTGTGTGTT 59.784 41.667 0.00 0.00 33.29 3.32
2504 2656 6.439375 TGTGTTGTAAGGTCACCACTAGATAT 59.561 38.462 0.00 0.00 33.11 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.874466 GGCTTCGCAGTCTAGACGC 60.874 63.158 21.94 21.94 36.20 5.19
1 2 0.101399 ATGGCTTCGCAGTCTAGACG 59.899 55.000 17.07 12.80 36.20 4.18
2 3 1.929836 CAATGGCTTCGCAGTCTAGAC 59.070 52.381 15.41 15.41 0.00 2.59
5 6 2.767536 GCAATGGCTTCGCAGTCTA 58.232 52.632 0.00 0.00 36.96 2.59
6 7 3.583383 GCAATGGCTTCGCAGTCT 58.417 55.556 0.00 0.00 36.96 3.24
16 17 0.524862 CAAGTCAGTCCAGCAATGGC 59.475 55.000 0.00 0.00 41.61 4.40
17 18 1.808945 GACAAGTCAGTCCAGCAATGG 59.191 52.381 0.00 0.00 32.36 3.16
18 19 2.483106 CAGACAAGTCAGTCCAGCAATG 59.517 50.000 2.72 0.00 39.34 2.82
19 20 2.551721 CCAGACAAGTCAGTCCAGCAAT 60.552 50.000 2.72 0.00 39.34 3.56
20 21 1.202687 CCAGACAAGTCAGTCCAGCAA 60.203 52.381 2.72 0.00 39.34 3.91
21 22 0.394192 CCAGACAAGTCAGTCCAGCA 59.606 55.000 2.72 0.00 39.34 4.41
22 23 0.681733 TCCAGACAAGTCAGTCCAGC 59.318 55.000 2.72 0.00 39.34 4.85
23 24 2.630098 TCTTCCAGACAAGTCAGTCCAG 59.370 50.000 2.72 0.00 39.34 3.86
24 25 2.677914 TCTTCCAGACAAGTCAGTCCA 58.322 47.619 2.72 0.00 39.34 4.02
25 26 3.658709 CTTCTTCCAGACAAGTCAGTCC 58.341 50.000 2.72 0.00 39.34 3.85
26 27 3.063485 GCTTCTTCCAGACAAGTCAGTC 58.937 50.000 2.72 0.00 38.81 3.51
27 28 2.703007 AGCTTCTTCCAGACAAGTCAGT 59.297 45.455 2.72 0.00 0.00 3.41
28 29 3.006752 AGAGCTTCTTCCAGACAAGTCAG 59.993 47.826 2.72 0.00 0.00 3.51
29 30 2.968574 AGAGCTTCTTCCAGACAAGTCA 59.031 45.455 2.72 0.00 0.00 3.41
30 31 3.676291 AGAGCTTCTTCCAGACAAGTC 57.324 47.619 0.00 0.00 0.00 3.01
31 32 3.389329 TCAAGAGCTTCTTCCAGACAAGT 59.611 43.478 0.00 0.00 33.78 3.16
32 33 3.745458 GTCAAGAGCTTCTTCCAGACAAG 59.255 47.826 0.00 0.00 33.78 3.16
33 34 3.389329 AGTCAAGAGCTTCTTCCAGACAA 59.611 43.478 12.76 0.00 33.78 3.18
34 35 2.968574 AGTCAAGAGCTTCTTCCAGACA 59.031 45.455 12.76 0.00 33.78 3.41
35 36 3.324993 CAGTCAAGAGCTTCTTCCAGAC 58.675 50.000 0.00 0.00 33.78 3.51
36 37 2.289320 GCAGTCAAGAGCTTCTTCCAGA 60.289 50.000 0.00 0.00 33.78 3.86
37 38 2.075338 GCAGTCAAGAGCTTCTTCCAG 58.925 52.381 0.00 0.00 33.78 3.86
38 39 1.696336 AGCAGTCAAGAGCTTCTTCCA 59.304 47.619 0.00 0.00 38.01 3.53
39 40 2.470983 AGCAGTCAAGAGCTTCTTCC 57.529 50.000 0.00 0.00 38.01 3.46
45 46 2.747396 CTCTGAAGCAGTCAAGAGCT 57.253 50.000 0.00 0.00 44.31 4.09
57 58 1.002379 AAGGCCAGCAGCTCTGAAG 60.002 57.895 5.01 1.54 45.72 3.02
58 59 1.002868 GAAGGCCAGCAGCTCTGAA 60.003 57.895 5.01 0.00 45.72 3.02
59 60 0.615827 TAGAAGGCCAGCAGCTCTGA 60.616 55.000 5.01 0.00 45.72 3.27
60 61 0.461693 GTAGAAGGCCAGCAGCTCTG 60.462 60.000 5.01 6.28 43.05 3.35
61 62 0.906756 TGTAGAAGGCCAGCAGCTCT 60.907 55.000 5.01 0.00 43.05 4.09
62 63 0.461693 CTGTAGAAGGCCAGCAGCTC 60.462 60.000 5.01 0.00 43.05 4.09
63 64 1.197430 ACTGTAGAAGGCCAGCAGCT 61.197 55.000 5.01 0.00 43.05 4.24
64 65 0.322008 AACTGTAGAAGGCCAGCAGC 60.322 55.000 5.01 0.00 42.60 5.25
65 66 1.808945 CAAACTGTAGAAGGCCAGCAG 59.191 52.381 5.01 7.97 31.76 4.24
66 67 1.142870 ACAAACTGTAGAAGGCCAGCA 59.857 47.619 5.01 0.00 31.76 4.41
67 68 1.537202 CACAAACTGTAGAAGGCCAGC 59.463 52.381 5.01 0.00 31.76 4.85
68 69 3.126001 TCACAAACTGTAGAAGGCCAG 57.874 47.619 5.01 0.00 34.82 4.85
69 70 3.788227 ATCACAAACTGTAGAAGGCCA 57.212 42.857 5.01 0.00 0.00 5.36
70 71 4.072131 TCAATCACAAACTGTAGAAGGCC 58.928 43.478 0.00 0.00 0.00 5.19
71 72 5.886960 ATCAATCACAAACTGTAGAAGGC 57.113 39.130 0.00 0.00 0.00 4.35
72 73 9.219603 TCTTTATCAATCACAAACTGTAGAAGG 57.780 33.333 0.00 0.00 0.00 3.46
74 75 9.219603 CCTCTTTATCAATCACAAACTGTAGAA 57.780 33.333 0.00 0.00 0.00 2.10
75 76 8.593679 TCCTCTTTATCAATCACAAACTGTAGA 58.406 33.333 0.00 0.00 0.00 2.59
76 77 8.777865 TCCTCTTTATCAATCACAAACTGTAG 57.222 34.615 0.00 0.00 0.00 2.74
77 78 9.739276 AATCCTCTTTATCAATCACAAACTGTA 57.261 29.630 0.00 0.00 0.00 2.74
78 79 8.517878 CAATCCTCTTTATCAATCACAAACTGT 58.482 33.333 0.00 0.00 0.00 3.55
79 80 7.972277 CCAATCCTCTTTATCAATCACAAACTG 59.028 37.037 0.00 0.00 0.00 3.16
80 81 7.890127 TCCAATCCTCTTTATCAATCACAAACT 59.110 33.333 0.00 0.00 0.00 2.66
81 82 8.055279 TCCAATCCTCTTTATCAATCACAAAC 57.945 34.615 0.00 0.00 0.00 2.93
82 83 8.648698 TTCCAATCCTCTTTATCAATCACAAA 57.351 30.769 0.00 0.00 0.00 2.83
83 84 8.689061 CATTCCAATCCTCTTTATCAATCACAA 58.311 33.333 0.00 0.00 0.00 3.33
84 85 8.054572 TCATTCCAATCCTCTTTATCAATCACA 58.945 33.333 0.00 0.00 0.00 3.58
85 86 8.455903 TCATTCCAATCCTCTTTATCAATCAC 57.544 34.615 0.00 0.00 0.00 3.06
86 87 9.128404 CTTCATTCCAATCCTCTTTATCAATCA 57.872 33.333 0.00 0.00 0.00 2.57
87 88 9.347240 TCTTCATTCCAATCCTCTTTATCAATC 57.653 33.333 0.00 0.00 0.00 2.67
88 89 9.352191 CTCTTCATTCCAATCCTCTTTATCAAT 57.648 33.333 0.00 0.00 0.00 2.57
89 90 7.284034 GCTCTTCATTCCAATCCTCTTTATCAA 59.716 37.037 0.00 0.00 0.00 2.57
90 91 6.769822 GCTCTTCATTCCAATCCTCTTTATCA 59.230 38.462 0.00 0.00 0.00 2.15
91 92 6.997476 AGCTCTTCATTCCAATCCTCTTTATC 59.003 38.462 0.00 0.00 0.00 1.75
92 93 6.909076 AGCTCTTCATTCCAATCCTCTTTAT 58.091 36.000 0.00 0.00 0.00 1.40
93 94 6.319048 AGCTCTTCATTCCAATCCTCTTTA 57.681 37.500 0.00 0.00 0.00 1.85
94 95 5.190357 AGCTCTTCATTCCAATCCTCTTT 57.810 39.130 0.00 0.00 0.00 2.52
95 96 4.858965 AGCTCTTCATTCCAATCCTCTT 57.141 40.909 0.00 0.00 0.00 2.85
96 97 4.474287 AGAAGCTCTTCATTCCAATCCTCT 59.526 41.667 11.69 0.00 41.84 3.69
97 98 4.575645 CAGAAGCTCTTCATTCCAATCCTC 59.424 45.833 11.69 0.00 41.84 3.71
98 99 4.525024 CAGAAGCTCTTCATTCCAATCCT 58.475 43.478 11.69 0.00 41.84 3.24
99 100 3.066481 GCAGAAGCTCTTCATTCCAATCC 59.934 47.826 11.69 0.00 41.84 3.01
100 101 4.290104 GCAGAAGCTCTTCATTCCAATC 57.710 45.455 11.69 0.00 41.84 2.67
114 115 2.728922 GCATAGAATTGCAGCAGAAGC 58.271 47.619 0.00 0.00 42.31 3.86
123 124 5.300969 TGTGAAGAGTTGCATAGAATTGC 57.699 39.130 0.00 0.00 43.07 3.56
124 125 6.685828 CGAATGTGAAGAGTTGCATAGAATTG 59.314 38.462 0.00 0.00 0.00 2.32
125 126 6.676456 GCGAATGTGAAGAGTTGCATAGAATT 60.676 38.462 0.00 0.00 0.00 2.17
126 127 5.220739 GCGAATGTGAAGAGTTGCATAGAAT 60.221 40.000 0.00 0.00 0.00 2.40
127 128 4.093408 GCGAATGTGAAGAGTTGCATAGAA 59.907 41.667 0.00 0.00 0.00 2.10
128 129 3.618594 GCGAATGTGAAGAGTTGCATAGA 59.381 43.478 0.00 0.00 0.00 1.98
129 130 3.620374 AGCGAATGTGAAGAGTTGCATAG 59.380 43.478 0.00 0.00 0.00 2.23
130 131 3.371898 CAGCGAATGTGAAGAGTTGCATA 59.628 43.478 0.00 0.00 0.00 3.14
131 132 2.161012 CAGCGAATGTGAAGAGTTGCAT 59.839 45.455 0.00 0.00 0.00 3.96
132 133 1.532437 CAGCGAATGTGAAGAGTTGCA 59.468 47.619 0.00 0.00 0.00 4.08
133 134 1.727213 GCAGCGAATGTGAAGAGTTGC 60.727 52.381 0.00 0.00 32.52 4.17
134 135 1.802960 AGCAGCGAATGTGAAGAGTTG 59.197 47.619 0.00 0.00 0.00 3.16
135 136 2.175878 AGCAGCGAATGTGAAGAGTT 57.824 45.000 0.00 0.00 0.00 3.01
136 137 2.232452 AGTAGCAGCGAATGTGAAGAGT 59.768 45.455 0.00 0.00 0.00 3.24
137 138 2.886081 AGTAGCAGCGAATGTGAAGAG 58.114 47.619 0.00 0.00 0.00 2.85
138 139 3.192633 TGTAGTAGCAGCGAATGTGAAGA 59.807 43.478 0.00 0.00 0.00 2.87
139 140 3.511699 TGTAGTAGCAGCGAATGTGAAG 58.488 45.455 0.00 0.00 0.00 3.02
140 141 3.511699 CTGTAGTAGCAGCGAATGTGAA 58.488 45.455 0.00 0.00 0.00 3.18
141 142 2.159240 CCTGTAGTAGCAGCGAATGTGA 60.159 50.000 0.00 0.00 35.28 3.58
142 143 2.196749 CCTGTAGTAGCAGCGAATGTG 58.803 52.381 0.00 0.00 35.28 3.21
143 144 1.137086 CCCTGTAGTAGCAGCGAATGT 59.863 52.381 0.00 0.00 35.28 2.71
144 145 1.409064 TCCCTGTAGTAGCAGCGAATG 59.591 52.381 0.00 0.00 35.28 2.67
145 146 1.776662 TCCCTGTAGTAGCAGCGAAT 58.223 50.000 0.00 0.00 35.28 3.34
146 147 1.681793 GATCCCTGTAGTAGCAGCGAA 59.318 52.381 0.00 0.00 35.28 4.70
147 148 1.319541 GATCCCTGTAGTAGCAGCGA 58.680 55.000 0.00 0.00 35.28 4.93
148 149 0.315568 GGATCCCTGTAGTAGCAGCG 59.684 60.000 0.00 0.00 35.28 5.18
149 150 0.315568 CGGATCCCTGTAGTAGCAGC 59.684 60.000 6.06 0.00 35.28 5.25
150 151 1.982660 TCGGATCCCTGTAGTAGCAG 58.017 55.000 6.06 0.00 36.31 4.24
151 152 2.092049 TCTTCGGATCCCTGTAGTAGCA 60.092 50.000 6.06 0.00 0.00 3.49
152 153 2.293955 GTCTTCGGATCCCTGTAGTAGC 59.706 54.545 6.06 0.00 0.00 3.58
153 154 3.822940 AGTCTTCGGATCCCTGTAGTAG 58.177 50.000 6.06 0.00 0.00 2.57
154 155 3.947612 AGTCTTCGGATCCCTGTAGTA 57.052 47.619 6.06 0.00 0.00 1.82
155 156 2.761208 CAAGTCTTCGGATCCCTGTAGT 59.239 50.000 6.06 0.00 0.00 2.73
156 157 2.101582 CCAAGTCTTCGGATCCCTGTAG 59.898 54.545 6.06 0.00 0.00 2.74
157 158 2.108168 CCAAGTCTTCGGATCCCTGTA 58.892 52.381 6.06 0.00 0.00 2.74
158 159 0.905357 CCAAGTCTTCGGATCCCTGT 59.095 55.000 6.06 0.00 0.00 4.00
159 160 0.179000 CCCAAGTCTTCGGATCCCTG 59.821 60.000 6.06 0.00 0.00 4.45
160 161 0.252742 ACCCAAGTCTTCGGATCCCT 60.253 55.000 6.06 0.00 0.00 4.20
161 162 0.178301 GACCCAAGTCTTCGGATCCC 59.822 60.000 6.06 0.00 40.10 3.85
162 163 0.178301 GGACCCAAGTCTTCGGATCC 59.822 60.000 0.00 0.00 43.05 3.36
163 164 1.196012 AGGACCCAAGTCTTCGGATC 58.804 55.000 2.90 0.00 43.05 3.36
164 165 1.279271 CAAGGACCCAAGTCTTCGGAT 59.721 52.381 2.90 0.00 43.05 4.18
165 166 0.685097 CAAGGACCCAAGTCTTCGGA 59.315 55.000 2.90 0.00 43.05 4.55
166 167 0.685097 TCAAGGACCCAAGTCTTCGG 59.315 55.000 0.00 0.00 43.05 4.30
167 168 1.344763 ACTCAAGGACCCAAGTCTTCG 59.655 52.381 0.00 0.00 43.05 3.79
168 169 2.551071 CCACTCAAGGACCCAAGTCTTC 60.551 54.545 0.00 0.00 43.05 2.87
169 170 1.421646 CCACTCAAGGACCCAAGTCTT 59.578 52.381 0.00 0.00 43.05 3.01
170 171 1.059913 CCACTCAAGGACCCAAGTCT 58.940 55.000 0.00 0.00 43.05 3.24
171 172 1.056660 TCCACTCAAGGACCCAAGTC 58.943 55.000 0.00 0.00 42.73 3.01
172 173 3.257627 TCCACTCAAGGACCCAAGT 57.742 52.632 0.00 0.00 31.23 3.16
179 180 0.033504 GCTTGTCGTCCACTCAAGGA 59.966 55.000 0.00 0.00 38.93 3.36
180 181 1.284982 CGCTTGTCGTCCACTCAAGG 61.285 60.000 0.00 0.00 38.93 3.61
181 182 0.318699 TCGCTTGTCGTCCACTCAAG 60.319 55.000 0.00 0.00 40.71 3.02
182 183 0.317160 ATCGCTTGTCGTCCACTCAA 59.683 50.000 0.00 0.00 39.67 3.02
183 184 0.388520 CATCGCTTGTCGTCCACTCA 60.389 55.000 0.00 0.00 39.67 3.41
184 185 0.388649 ACATCGCTTGTCGTCCACTC 60.389 55.000 0.00 0.00 39.67 3.51
185 186 0.885879 TACATCGCTTGTCGTCCACT 59.114 50.000 0.00 0.00 39.87 4.00
186 187 0.989890 GTACATCGCTTGTCGTCCAC 59.010 55.000 0.00 0.00 39.87 4.02
187 188 0.599060 TGTACATCGCTTGTCGTCCA 59.401 50.000 0.00 0.00 39.87 4.02
188 189 0.989890 GTGTACATCGCTTGTCGTCC 59.010 55.000 0.00 0.00 39.87 4.79
189 190 0.989890 GGTGTACATCGCTTGTCGTC 59.010 55.000 0.00 0.00 39.87 4.20
190 191 0.315886 TGGTGTACATCGCTTGTCGT 59.684 50.000 0.00 0.00 39.87 4.34
191 192 1.324435 CATGGTGTACATCGCTTGTCG 59.676 52.381 0.00 0.00 39.87 4.35
192 193 2.616960 TCATGGTGTACATCGCTTGTC 58.383 47.619 0.00 0.00 39.87 3.18
193 194 2.760634 TCATGGTGTACATCGCTTGT 57.239 45.000 0.00 0.00 42.62 3.16
194 195 2.223112 GCTTCATGGTGTACATCGCTTG 60.223 50.000 0.00 0.00 37.84 4.01
195 196 2.009774 GCTTCATGGTGTACATCGCTT 58.990 47.619 0.00 0.00 37.84 4.68
196 197 1.656652 GCTTCATGGTGTACATCGCT 58.343 50.000 0.00 0.00 37.84 4.93
197 198 0.657840 GGCTTCATGGTGTACATCGC 59.342 55.000 0.00 0.00 37.84 4.58
198 199 2.022764 TGGCTTCATGGTGTACATCG 57.977 50.000 0.00 0.00 37.84 3.84
199 200 3.428045 GCTTTGGCTTCATGGTGTACATC 60.428 47.826 0.00 0.00 34.77 3.06
200 201 2.493278 GCTTTGGCTTCATGGTGTACAT 59.507 45.455 0.00 0.00 36.39 2.29
201 202 1.885887 GCTTTGGCTTCATGGTGTACA 59.114 47.619 0.00 0.00 35.22 2.90
202 203 1.202348 GGCTTTGGCTTCATGGTGTAC 59.798 52.381 0.00 0.00 38.73 2.90
203 204 1.544724 GGCTTTGGCTTCATGGTGTA 58.455 50.000 0.00 0.00 38.73 2.90
204 205 1.187567 GGGCTTTGGCTTCATGGTGT 61.188 55.000 0.00 0.00 38.73 4.16
205 206 1.186917 TGGGCTTTGGCTTCATGGTG 61.187 55.000 0.00 0.00 38.73 4.17
206 207 0.471591 TTGGGCTTTGGCTTCATGGT 60.472 50.000 0.00 0.00 38.73 3.55
207 208 0.248289 CTTGGGCTTTGGCTTCATGG 59.752 55.000 0.00 0.00 38.73 3.66
208 209 1.259609 TCTTGGGCTTTGGCTTCATG 58.740 50.000 0.00 0.00 38.73 3.07
209 210 1.829222 CATCTTGGGCTTTGGCTTCAT 59.171 47.619 0.00 0.00 38.73 2.57
210 211 1.259609 CATCTTGGGCTTTGGCTTCA 58.740 50.000 0.00 0.00 38.73 3.02
211 212 1.203287 GACATCTTGGGCTTTGGCTTC 59.797 52.381 0.00 0.00 38.73 3.86
212 213 1.260544 GACATCTTGGGCTTTGGCTT 58.739 50.000 0.00 0.00 38.73 4.35
213 214 0.112995 TGACATCTTGGGCTTTGGCT 59.887 50.000 0.00 0.00 38.73 4.75
214 215 1.188863 ATGACATCTTGGGCTTTGGC 58.811 50.000 0.00 0.00 37.82 4.52
215 216 2.827322 TCAATGACATCTTGGGCTTTGG 59.173 45.455 0.00 0.00 0.00 3.28
216 217 3.675228 GCTCAATGACATCTTGGGCTTTG 60.675 47.826 6.42 0.00 44.85 2.77
217 218 2.494870 GCTCAATGACATCTTGGGCTTT 59.505 45.455 6.42 0.00 44.85 3.51
218 219 2.097825 GCTCAATGACATCTTGGGCTT 58.902 47.619 6.42 0.00 44.85 4.35
219 220 1.760192 GCTCAATGACATCTTGGGCT 58.240 50.000 6.42 0.00 44.85 5.19
221 222 4.334759 CAGTAAGCTCAATGACATCTTGGG 59.665 45.833 0.00 0.00 0.00 4.12
222 223 4.201891 GCAGTAAGCTCAATGACATCTTGG 60.202 45.833 0.00 0.00 41.15 3.61
223 224 4.201891 GGCAGTAAGCTCAATGACATCTTG 60.202 45.833 0.00 0.00 44.79 3.02
224 225 3.944015 GGCAGTAAGCTCAATGACATCTT 59.056 43.478 0.00 0.00 44.79 2.40
225 226 3.539604 GGCAGTAAGCTCAATGACATCT 58.460 45.455 0.00 0.00 44.79 2.90
226 227 2.615912 GGGCAGTAAGCTCAATGACATC 59.384 50.000 0.00 0.00 45.63 3.06
227 228 2.648059 GGGCAGTAAGCTCAATGACAT 58.352 47.619 0.00 0.00 45.63 3.06
228 229 2.113860 GGGCAGTAAGCTCAATGACA 57.886 50.000 0.00 0.00 45.63 3.58
236 237 2.935481 TGGGCAGGGCAGTAAGCT 60.935 61.111 0.00 0.00 44.79 3.74
237 238 2.751837 GTGGGCAGGGCAGTAAGC 60.752 66.667 0.00 0.00 44.65 3.09
238 239 1.078143 GAGTGGGCAGGGCAGTAAG 60.078 63.158 0.00 0.00 0.00 2.34
239 240 2.602676 GGAGTGGGCAGGGCAGTAA 61.603 63.158 0.00 0.00 0.00 2.24
240 241 2.176202 TAGGAGTGGGCAGGGCAGTA 62.176 60.000 0.00 0.00 0.00 2.74
241 242 3.562681 TAGGAGTGGGCAGGGCAGT 62.563 63.158 0.00 0.00 0.00 4.40
242 243 2.688666 TAGGAGTGGGCAGGGCAG 60.689 66.667 0.00 0.00 0.00 4.85
243 244 2.688666 CTAGGAGTGGGCAGGGCA 60.689 66.667 0.00 0.00 0.00 5.36
244 245 2.689034 ACTAGGAGTGGGCAGGGC 60.689 66.667 0.00 0.00 0.00 5.19
245 246 0.909610 TTCACTAGGAGTGGGCAGGG 60.910 60.000 6.77 0.00 45.94 4.45
246 247 0.250513 GTTCACTAGGAGTGGGCAGG 59.749 60.000 6.77 0.00 45.94 4.85
247 248 0.976641 TGTTCACTAGGAGTGGGCAG 59.023 55.000 6.77 0.00 45.94 4.85
248 249 0.685097 GTGTTCACTAGGAGTGGGCA 59.315 55.000 6.77 3.91 45.94 5.36
249 250 0.977395 AGTGTTCACTAGGAGTGGGC 59.023 55.000 3.47 1.57 45.94 5.36
250 251 4.023980 TCATAGTGTTCACTAGGAGTGGG 58.976 47.826 18.91 4.71 45.94 4.61
251 252 5.411781 GTTCATAGTGTTCACTAGGAGTGG 58.588 45.833 20.80 7.41 45.94 4.00
253 254 5.084519 TGGTTCATAGTGTTCACTAGGAGT 58.915 41.667 20.80 3.56 34.98 3.85
254 255 5.394663 CCTGGTTCATAGTGTTCACTAGGAG 60.395 48.000 20.80 12.85 38.14 3.69
255 256 4.466370 CCTGGTTCATAGTGTTCACTAGGA 59.534 45.833 18.91 18.91 38.14 2.94
256 257 4.223032 ACCTGGTTCATAGTGTTCACTAGG 59.777 45.833 15.54 15.54 40.88 3.02
257 258 5.407407 ACCTGGTTCATAGTGTTCACTAG 57.593 43.478 16.08 9.66 0.00 2.57
258 259 5.071250 ACAACCTGGTTCATAGTGTTCACTA 59.929 40.000 9.62 13.85 0.00 2.74
259 260 4.141482 ACAACCTGGTTCATAGTGTTCACT 60.141 41.667 9.62 10.33 0.00 3.41
260 261 4.134563 ACAACCTGGTTCATAGTGTTCAC 58.865 43.478 9.62 0.00 0.00 3.18
261 262 4.141597 TGACAACCTGGTTCATAGTGTTCA 60.142 41.667 9.62 2.76 0.00 3.18
262 263 4.385825 TGACAACCTGGTTCATAGTGTTC 58.614 43.478 9.62 0.32 0.00 3.18
263 264 4.389374 CTGACAACCTGGTTCATAGTGTT 58.611 43.478 9.62 0.00 0.00 3.32
264 265 3.807209 GCTGACAACCTGGTTCATAGTGT 60.807 47.826 9.62 4.00 0.00 3.55
265 266 2.744202 GCTGACAACCTGGTTCATAGTG 59.256 50.000 9.62 0.25 0.00 2.74
266 267 2.639839 AGCTGACAACCTGGTTCATAGT 59.360 45.455 9.62 4.42 0.00 2.12
267 268 3.005554 CAGCTGACAACCTGGTTCATAG 58.994 50.000 8.42 8.85 0.00 2.23
268 269 2.875672 GCAGCTGACAACCTGGTTCATA 60.876 50.000 20.43 0.00 0.00 2.15
269 270 1.901591 CAGCTGACAACCTGGTTCAT 58.098 50.000 8.42 0.22 0.00 2.57
270 271 0.819259 GCAGCTGACAACCTGGTTCA 60.819 55.000 20.43 5.02 0.00 3.18
271 272 0.819259 TGCAGCTGACAACCTGGTTC 60.819 55.000 20.43 0.00 0.00 3.62
272 273 1.103398 GTGCAGCTGACAACCTGGTT 61.103 55.000 20.43 6.18 0.00 3.67
273 274 1.526917 GTGCAGCTGACAACCTGGT 60.527 57.895 20.43 0.00 0.00 4.00
274 275 2.263741 GGTGCAGCTGACAACCTGG 61.264 63.158 20.43 0.00 0.00 4.45
275 276 1.102809 TTGGTGCAGCTGACAACCTG 61.103 55.000 25.16 0.00 0.00 4.00
276 277 0.395586 TTTGGTGCAGCTGACAACCT 60.396 50.000 25.16 0.00 0.00 3.50
277 278 0.459489 TTTTGGTGCAGCTGACAACC 59.541 50.000 20.43 20.68 0.00 3.77
278 279 2.129607 CATTTTGGTGCAGCTGACAAC 58.870 47.619 20.43 17.91 0.00 3.32
279 280 1.755959 ACATTTTGGTGCAGCTGACAA 59.244 42.857 20.43 15.78 0.00 3.18
280 281 1.401761 ACATTTTGGTGCAGCTGACA 58.598 45.000 20.43 12.49 0.00 3.58
281 282 2.514205 AACATTTTGGTGCAGCTGAC 57.486 45.000 20.43 12.61 0.00 3.51
282 283 3.196463 CAAAACATTTTGGTGCAGCTGA 58.804 40.909 20.43 2.79 42.81 4.26
283 284 3.595709 CAAAACATTTTGGTGCAGCTG 57.404 42.857 18.08 10.11 42.81 4.24
292 293 6.661669 GGAAGATGCTTTCCAAAACATTTTG 58.338 36.000 9.66 9.66 44.90 2.44
293 294 6.866010 GGAAGATGCTTTCCAAAACATTTT 57.134 33.333 9.43 0.00 44.90 1.82
309 310 2.433604 TGGCTCTAGCTTCTGGAAGATG 59.566 50.000 13.74 3.82 39.68 2.90
310 311 2.756907 TGGCTCTAGCTTCTGGAAGAT 58.243 47.619 13.74 10.06 39.68 2.40
311 312 2.238084 TGGCTCTAGCTTCTGGAAGA 57.762 50.000 13.74 0.00 40.79 2.87
312 313 3.006247 GTTTGGCTCTAGCTTCTGGAAG 58.994 50.000 6.02 6.02 41.70 3.46
313 314 2.371841 TGTTTGGCTCTAGCTTCTGGAA 59.628 45.455 0.00 0.00 41.70 3.53
314 315 1.977854 TGTTTGGCTCTAGCTTCTGGA 59.022 47.619 0.00 0.00 41.70 3.86
315 316 2.479566 TGTTTGGCTCTAGCTTCTGG 57.520 50.000 0.00 0.00 41.70 3.86
316 317 3.603532 TCATGTTTGGCTCTAGCTTCTG 58.396 45.455 0.00 0.00 41.70 3.02
317 318 3.871485 CTCATGTTTGGCTCTAGCTTCT 58.129 45.455 0.00 0.00 41.70 2.85
318 319 2.354199 GCTCATGTTTGGCTCTAGCTTC 59.646 50.000 0.00 0.00 41.70 3.86
319 320 2.363683 GCTCATGTTTGGCTCTAGCTT 58.636 47.619 0.00 0.00 41.70 3.74
320 321 1.407989 GGCTCATGTTTGGCTCTAGCT 60.408 52.381 1.39 0.00 41.70 3.32
321 322 1.020437 GGCTCATGTTTGGCTCTAGC 58.980 55.000 0.00 0.00 41.14 3.42
322 323 2.408271 TGGCTCATGTTTGGCTCTAG 57.592 50.000 0.00 0.00 0.00 2.43
323 324 2.877097 TTGGCTCATGTTTGGCTCTA 57.123 45.000 0.00 0.00 0.00 2.43
324 325 1.999648 TTTGGCTCATGTTTGGCTCT 58.000 45.000 0.00 0.00 0.00 4.09
325 326 2.613691 CATTTGGCTCATGTTTGGCTC 58.386 47.619 0.00 0.00 0.00 4.70
326 327 1.338389 GCATTTGGCTCATGTTTGGCT 60.338 47.619 0.00 0.00 40.25 4.75
327 328 1.081094 GCATTTGGCTCATGTTTGGC 58.919 50.000 0.00 0.00 40.25 4.52
344 345 0.034863 TGGCTTCATCATGCTCAGCA 60.035 50.000 0.00 0.00 44.86 4.41
345 346 0.381089 GTGGCTTCATCATGCTCAGC 59.619 55.000 0.00 0.00 0.00 4.26
346 347 2.039818 AGTGGCTTCATCATGCTCAG 57.960 50.000 0.00 0.00 0.00 3.35
347 348 2.420547 GGTAGTGGCTTCATCATGCTCA 60.421 50.000 0.00 0.00 0.00 4.26
348 349 2.216898 GGTAGTGGCTTCATCATGCTC 58.783 52.381 0.00 0.00 0.00 4.26
349 350 1.561076 TGGTAGTGGCTTCATCATGCT 59.439 47.619 0.00 0.00 0.00 3.79
350 351 1.672881 GTGGTAGTGGCTTCATCATGC 59.327 52.381 0.00 0.00 0.00 4.06
351 352 2.989909 TGTGGTAGTGGCTTCATCATG 58.010 47.619 0.00 0.00 0.00 3.07
352 353 3.264193 TCTTGTGGTAGTGGCTTCATCAT 59.736 43.478 0.00 0.00 0.00 2.45
353 354 2.637382 TCTTGTGGTAGTGGCTTCATCA 59.363 45.455 0.00 0.00 0.00 3.07
354 355 3.334583 TCTTGTGGTAGTGGCTTCATC 57.665 47.619 0.00 0.00 0.00 2.92
355 356 3.614092 CATCTTGTGGTAGTGGCTTCAT 58.386 45.455 0.00 0.00 0.00 2.57
356 357 2.875672 GCATCTTGTGGTAGTGGCTTCA 60.876 50.000 0.00 0.00 0.00 3.02
357 358 1.740025 GCATCTTGTGGTAGTGGCTTC 59.260 52.381 0.00 0.00 0.00 3.86
358 359 1.352352 AGCATCTTGTGGTAGTGGCTT 59.648 47.619 0.00 0.00 36.63 4.35
359 360 0.987294 AGCATCTTGTGGTAGTGGCT 59.013 50.000 0.00 0.00 36.63 4.75
360 361 1.089920 CAGCATCTTGTGGTAGTGGC 58.910 55.000 0.00 0.00 36.63 5.01
361 362 2.768253 TCAGCATCTTGTGGTAGTGG 57.232 50.000 0.00 0.00 36.63 4.00
362 363 5.468072 GGATATTCAGCATCTTGTGGTAGTG 59.532 44.000 0.00 0.00 36.63 2.74
363 364 5.130975 TGGATATTCAGCATCTTGTGGTAGT 59.869 40.000 0.00 0.00 36.63 2.73
364 365 5.614308 TGGATATTCAGCATCTTGTGGTAG 58.386 41.667 0.00 0.00 36.63 3.18
365 366 5.628797 TGGATATTCAGCATCTTGTGGTA 57.371 39.130 0.00 0.00 36.63 3.25
366 367 4.508551 TGGATATTCAGCATCTTGTGGT 57.491 40.909 0.00 0.00 39.64 4.16
367 368 5.221185 CCTTTGGATATTCAGCATCTTGTGG 60.221 44.000 0.00 0.00 0.00 4.17
368 369 5.591472 TCCTTTGGATATTCAGCATCTTGTG 59.409 40.000 0.00 0.00 0.00 3.33
369 370 5.759059 TCCTTTGGATATTCAGCATCTTGT 58.241 37.500 0.00 0.00 0.00 3.16
370 371 5.826737 ACTCCTTTGGATATTCAGCATCTTG 59.173 40.000 0.00 0.00 0.00 3.02
371 372 6.011122 ACTCCTTTGGATATTCAGCATCTT 57.989 37.500 0.00 0.00 0.00 2.40
372 373 5.643421 ACTCCTTTGGATATTCAGCATCT 57.357 39.130 0.00 0.00 0.00 2.90
373 374 6.060788 AGAACTCCTTTGGATATTCAGCATC 58.939 40.000 11.07 0.00 32.44 3.91
374 375 6.011122 AGAACTCCTTTGGATATTCAGCAT 57.989 37.500 11.07 0.00 32.44 3.79
375 376 5.441718 AGAACTCCTTTGGATATTCAGCA 57.558 39.130 11.07 0.00 32.44 4.41
376 377 6.765915 AAAGAACTCCTTTGGATATTCAGC 57.234 37.500 11.07 0.00 43.10 4.26
387 388 5.836821 GGTCTTCAACAAAGAACTCCTTT 57.163 39.130 0.00 0.00 46.48 3.11
394 395 3.751518 GCCCTAGGTCTTCAACAAAGAA 58.248 45.455 8.29 0.00 45.50 2.52
395 396 2.289444 CGCCCTAGGTCTTCAACAAAGA 60.289 50.000 8.29 0.00 41.81 2.52
396 397 2.076863 CGCCCTAGGTCTTCAACAAAG 58.923 52.381 8.29 0.00 36.22 2.77
397 398 1.418637 ACGCCCTAGGTCTTCAACAAA 59.581 47.619 8.29 0.00 0.00 2.83
398 399 1.053424 ACGCCCTAGGTCTTCAACAA 58.947 50.000 8.29 0.00 0.00 2.83
399 400 0.320374 CACGCCCTAGGTCTTCAACA 59.680 55.000 8.29 0.00 0.00 3.33
400 401 0.320697 ACACGCCCTAGGTCTTCAAC 59.679 55.000 8.29 0.00 0.00 3.18
401 402 1.053424 AACACGCCCTAGGTCTTCAA 58.947 50.000 8.29 0.00 0.00 2.69
402 403 1.053424 AAACACGCCCTAGGTCTTCA 58.947 50.000 8.29 0.00 0.00 3.02
403 404 1.439679 CAAACACGCCCTAGGTCTTC 58.560 55.000 8.29 0.00 0.00 2.87
404 405 0.036306 CCAAACACGCCCTAGGTCTT 59.964 55.000 8.29 0.00 0.00 3.01
405 406 1.125711 ACCAAACACGCCCTAGGTCT 61.126 55.000 8.29 0.00 0.00 3.85
406 407 0.250597 AACCAAACACGCCCTAGGTC 60.251 55.000 8.29 0.00 0.00 3.85
407 408 0.536460 CAACCAAACACGCCCTAGGT 60.536 55.000 8.29 0.00 0.00 3.08
408 409 1.862602 GCAACCAAACACGCCCTAGG 61.863 60.000 0.06 0.06 0.00 3.02
409 410 1.579429 GCAACCAAACACGCCCTAG 59.421 57.895 0.00 0.00 0.00 3.02
455 456 1.630878 CAAACAGGCCTCTCCCTTACT 59.369 52.381 0.00 0.00 31.24 2.24
628 632 3.007290 CCAGATTTCCATCTCTCGCCATA 59.993 47.826 0.00 0.00 37.71 2.74
635 639 0.531532 CGCGCCAGATTTCCATCTCT 60.532 55.000 0.00 0.00 37.71 3.10
705 715 0.402121 GAGAAGAAAGGGGGCACTGT 59.598 55.000 0.00 0.00 0.00 3.55
723 738 3.625897 CGGTGGTGAGGCAGTGGA 61.626 66.667 0.00 0.00 0.00 4.02
959 1007 3.127030 GGTTCATTCAGTGGGAAATCGAC 59.873 47.826 0.00 0.00 39.39 4.20
1153 1203 9.846248 GCAATTGTAGATGTAGTTCAGATTTTT 57.154 29.630 7.40 0.00 0.00 1.94
1220 1270 0.681175 GACAAGCCTGGCAAATGGTT 59.319 50.000 22.65 1.62 0.00 3.67
1385 1436 2.352805 CTTGGGTGGAGTCTGGCC 59.647 66.667 0.00 0.00 0.00 5.36
1386 1437 2.360475 GCTTGGGTGGAGTCTGGC 60.360 66.667 0.00 0.00 0.00 4.85
1387 1438 1.002868 CTGCTTGGGTGGAGTCTGG 60.003 63.158 0.00 0.00 0.00 3.86
1388 1439 1.002868 CCTGCTTGGGTGGAGTCTG 60.003 63.158 0.00 0.00 0.00 3.51
1390 1441 3.161557 ACCTGCTTGGGTGGAGTC 58.838 61.111 1.69 0.00 41.11 3.36
1420 1473 0.183971 TCTCTCCTCTAAGCTCCCCG 59.816 60.000 0.00 0.00 0.00 5.73
1545 1599 6.524586 GCTGAACTTGAACAATACAAGCATAC 59.475 38.462 0.00 0.00 45.66 2.39
1580 1634 3.054139 TCCTGAAAATGGCATCACTAGCT 60.054 43.478 0.00 0.00 0.00 3.32
1888 1942 5.127491 TCGTTGAGATGGTACCTTGTTTTT 58.873 37.500 14.36 0.00 0.00 1.94
2047 2103 4.833390 ACTTAACTTGAGTGGAGTATGGC 58.167 43.478 0.00 0.00 0.00 4.40
2123 2179 0.541063 TCCTCCTCAGGCACGTGTTA 60.541 55.000 18.38 0.00 40.12 2.41
2153 2209 3.579709 CAGAGCTAACAACATCGTCAGT 58.420 45.455 0.00 0.00 0.00 3.41
2205 2261 4.159693 ACTCCAACCTTTTGTTCTTCCAAC 59.840 41.667 0.00 0.00 34.00 3.77
2317 2384 3.403038 TGCTACTGTTGCTTCTTCTTCC 58.597 45.455 14.81 0.00 0.00 3.46
2484 2636 8.234136 CACTTATATCTAGTGGTGACCTTACA 57.766 38.462 2.11 0.00 39.42 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.