Multiple sequence alignment - TraesCS3A01G263800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G263800 chr3A 100.000 5412 0 0 1 5412 487452928 487447517 0.000000e+00 9995.0
1 TraesCS3A01G263800 chr3A 92.079 101 8 0 775 875 432857425 432857525 5.650000e-30 143.0
2 TraesCS3A01G263800 chr3B 93.951 4596 139 43 873 5412 476045080 476040568 0.000000e+00 6818.0
3 TraesCS3A01G263800 chr3B 89.189 185 15 5 594 776 476045259 476045078 5.450000e-55 226.0
4 TraesCS3A01G263800 chr3B 78.629 248 46 6 355 598 716426914 716426670 2.020000e-34 158.0
5 TraesCS3A01G263800 chr3B 78.629 248 46 6 355 598 716459043 716458799 2.020000e-34 158.0
6 TraesCS3A01G263800 chr3B 91.000 100 9 0 776 875 99666554 99666455 9.460000e-28 135.0
7 TraesCS3A01G263800 chr3B 79.558 181 24 7 17 194 716459383 716459213 3.420000e-22 117.0
8 TraesCS3A01G263800 chr3B 79.006 181 25 7 17 194 716427253 716427083 1.590000e-20 111.0
9 TraesCS3A01G263800 chr3D 93.789 4605 140 53 873 5412 365536981 365532458 0.000000e+00 6785.0
10 TraesCS3A01G263800 chr3D 91.919 99 6 2 778 875 527004748 527004845 2.630000e-28 137.0
11 TraesCS3A01G263800 chr4A 93.515 586 36 2 1 586 368126766 368126183 0.000000e+00 870.0
12 TraesCS3A01G263800 chr4A 86.454 251 30 4 352 600 368127430 368127678 6.910000e-69 272.0
13 TraesCS3A01G263800 chr4A 77.660 282 59 3 316 595 647442766 647442487 9.320000e-38 169.0
14 TraesCS3A01G263800 chr4A 91.089 101 7 2 775 874 631219804 631219903 9.460000e-28 135.0
15 TraesCS3A01G263800 chr2B 83.916 286 39 7 317 598 559129701 559129419 3.210000e-67 267.0
16 TraesCS3A01G263800 chr2B 91.509 106 9 0 777 882 6316410 6316515 4.370000e-31 147.0
17 TraesCS3A01G263800 chr6B 77.955 313 60 7 285 595 125420640 125420945 2.570000e-43 187.0
18 TraesCS3A01G263800 chr1B 78.246 285 58 3 316 598 20100513 20100795 4.310000e-41 180.0
19 TraesCS3A01G263800 chr5A 76.873 307 65 6 287 592 615916865 615917166 9.320000e-38 169.0
20 TraesCS3A01G263800 chr5A 84.677 124 16 3 2 124 561695377 561695256 2.650000e-23 121.0
21 TraesCS3A01G263800 chr5D 87.597 129 15 1 16 144 428702229 428702102 1.210000e-31 148.0
22 TraesCS3A01G263800 chr5D 91.919 99 8 0 778 876 379575622 379575720 7.310000e-29 139.0
23 TraesCS3A01G263800 chr5D 85.417 96 9 4 31 124 444856662 444856570 1.600000e-15 95.3
24 TraesCS3A01G263800 chr7D 87.402 127 15 1 16 142 557431437 557431312 1.570000e-30 145.0
25 TraesCS3A01G263800 chr2D 85.211 142 20 1 1 142 405870621 405870761 1.570000e-30 145.0
26 TraesCS3A01G263800 chrUn 89.423 104 11 0 777 880 162316591 162316488 1.220000e-26 132.0
27 TraesCS3A01G263800 chr6A 88.393 112 10 3 773 883 12423570 12423679 1.220000e-26 132.0
28 TraesCS3A01G263800 chr1D 90.099 101 10 0 778 878 120317627 120317527 1.220000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G263800 chr3A 487447517 487452928 5411 True 9995 9995 100.000 1 5412 1 chr3A.!!$R1 5411
1 TraesCS3A01G263800 chr3B 476040568 476045259 4691 True 3522 6818 91.570 594 5412 2 chr3B.!!$R2 4818
2 TraesCS3A01G263800 chr3D 365532458 365536981 4523 True 6785 6785 93.789 873 5412 1 chr3D.!!$R1 4539
3 TraesCS3A01G263800 chr4A 368126183 368126766 583 True 870 870 93.515 1 586 1 chr4A.!!$R1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 420 0.107017 CTCTACAAGTGGGCCCCATG 60.107 60.0 22.27 17.92 35.28 3.66 F
1445 1447 0.179045 ATCGAGGCTATTGTGGTGCC 60.179 55.0 0.00 0.00 46.42 5.01 F
1456 1458 0.249120 TGTGGTGCCGAATGTAGGAG 59.751 55.0 0.00 0.00 0.00 3.69 F
1457 1459 0.462047 GTGGTGCCGAATGTAGGAGG 60.462 60.0 0.00 0.00 0.00 4.30 F
1458 1460 0.616395 TGGTGCCGAATGTAGGAGGA 60.616 55.0 0.00 0.00 0.00 3.71 F
1636 1638 0.685660 TCAAATTGCCAGCATTGCCA 59.314 45.0 4.70 0.00 0.00 4.92 F
3579 3672 0.593128 CTTTGGGAAACGTCCTGCTG 59.407 55.0 0.00 0.00 44.28 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1451 0.826715 GAGCTGCACATCCTCCTACA 59.173 55.000 1.02 0.0 0.00 2.74 R
2560 2611 2.938451 TGACAGTGTCAAAGACTTGCAG 59.062 45.455 23.55 0.0 39.78 4.41 R
3148 3201 6.238731 CCTGTTTCTCTGTGAATTGTAAAGCA 60.239 38.462 0.00 0.0 34.24 3.91 R
3209 3262 9.574516 ACTTCAAAATTACCAAGTCTGAATAGT 57.425 29.630 0.00 0.0 0.00 2.12 R
3565 3658 1.166531 AACTGCAGCAGGACGTTTCC 61.167 55.000 26.38 0.0 43.22 3.13 R
3687 3782 3.392616 GGGTGGAGTAATGATCAGGTGAT 59.607 47.826 0.09 0.0 37.51 3.06 R
4802 4919 1.172175 TGTATGCTTTGCCATTGCGA 58.828 45.000 0.00 0.0 41.78 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 5.842619 TGATGTTAACATGTGCAAAATGC 57.157 34.783 25.42 7.61 33.78 3.56
92 93 3.492102 ATGCAGAGTGGTACAGTTTGT 57.508 42.857 0.00 0.00 45.14 2.83
93 94 4.617253 ATGCAGAGTGGTACAGTTTGTA 57.383 40.909 0.00 0.00 45.14 2.41
94 95 4.617253 TGCAGAGTGGTACAGTTTGTAT 57.383 40.909 0.00 0.00 45.14 2.29
95 96 4.968259 TGCAGAGTGGTACAGTTTGTATT 58.032 39.130 0.00 0.00 45.14 1.89
96 97 6.104146 TGCAGAGTGGTACAGTTTGTATTA 57.896 37.500 0.00 0.00 45.14 0.98
97 98 5.929992 TGCAGAGTGGTACAGTTTGTATTAC 59.070 40.000 0.00 0.00 45.14 1.89
98 99 6.164176 GCAGAGTGGTACAGTTTGTATTACT 58.836 40.000 0.00 7.57 45.14 2.24
99 100 7.039574 TGCAGAGTGGTACAGTTTGTATTACTA 60.040 37.037 0.00 0.00 45.14 1.82
100 101 7.275123 GCAGAGTGGTACAGTTTGTATTACTAC 59.725 40.741 0.00 0.00 45.14 2.73
101 102 7.484007 CAGAGTGGTACAGTTTGTATTACTACG 59.516 40.741 0.00 0.00 45.14 3.51
102 103 7.391554 AGAGTGGTACAGTTTGTATTACTACGA 59.608 37.037 0.00 0.00 45.14 3.43
103 104 8.059798 AGTGGTACAGTTTGTATTACTACGAT 57.940 34.615 0.00 0.00 40.27 3.73
104 105 8.526147 AGTGGTACAGTTTGTATTACTACGATT 58.474 33.333 0.00 0.00 40.27 3.34
105 106 9.787532 GTGGTACAGTTTGTATTACTACGATTA 57.212 33.333 0.00 0.00 41.80 1.75
165 166 8.763049 AAAAGTACTAAATGGGTCGTACTAAC 57.237 34.615 0.00 0.00 41.02 2.34
166 167 7.709149 AAGTACTAAATGGGTCGTACTAACT 57.291 36.000 0.00 0.00 41.02 2.24
167 168 7.093322 AGTACTAAATGGGTCGTACTAACTG 57.907 40.000 0.00 0.00 40.35 3.16
168 169 4.752146 ACTAAATGGGTCGTACTAACTGC 58.248 43.478 0.00 0.00 0.00 4.40
169 170 3.688694 AAATGGGTCGTACTAACTGCA 57.311 42.857 0.00 0.00 0.00 4.41
170 171 2.961526 ATGGGTCGTACTAACTGCAG 57.038 50.000 13.48 13.48 0.00 4.41
171 172 0.245539 TGGGTCGTACTAACTGCAGC 59.754 55.000 15.27 0.00 0.00 5.25
172 173 0.459759 GGGTCGTACTAACTGCAGCC 60.460 60.000 15.27 2.89 0.00 4.85
173 174 0.459759 GGTCGTACTAACTGCAGCCC 60.460 60.000 15.27 0.00 0.00 5.19
174 175 0.245539 GTCGTACTAACTGCAGCCCA 59.754 55.000 15.27 0.00 0.00 5.36
175 176 1.134788 GTCGTACTAACTGCAGCCCAT 60.135 52.381 15.27 0.00 0.00 4.00
176 177 1.553248 TCGTACTAACTGCAGCCCATT 59.447 47.619 15.27 2.72 0.00 3.16
177 178 2.027561 TCGTACTAACTGCAGCCCATTT 60.028 45.455 15.27 2.30 0.00 2.32
178 179 3.196039 TCGTACTAACTGCAGCCCATTTA 59.804 43.478 15.27 3.51 0.00 1.40
179 180 3.936453 CGTACTAACTGCAGCCCATTTAA 59.064 43.478 15.27 0.00 0.00 1.52
180 181 4.034048 CGTACTAACTGCAGCCCATTTAAG 59.966 45.833 15.27 2.38 0.00 1.85
181 182 2.755103 ACTAACTGCAGCCCATTTAAGC 59.245 45.455 15.27 0.00 0.00 3.09
182 183 1.631405 AACTGCAGCCCATTTAAGCA 58.369 45.000 15.27 0.00 0.00 3.91
183 184 1.631405 ACTGCAGCCCATTTAAGCAA 58.369 45.000 15.27 0.00 34.45 3.91
184 185 1.273327 ACTGCAGCCCATTTAAGCAAC 59.727 47.619 15.27 0.00 34.45 4.17
185 186 1.273048 CTGCAGCCCATTTAAGCAACA 59.727 47.619 0.00 0.00 34.45 3.33
186 187 1.000731 TGCAGCCCATTTAAGCAACAC 59.999 47.619 0.00 0.00 31.42 3.32
187 188 1.000731 GCAGCCCATTTAAGCAACACA 59.999 47.619 0.00 0.00 0.00 3.72
188 189 2.354003 GCAGCCCATTTAAGCAACACAT 60.354 45.455 0.00 0.00 0.00 3.21
189 190 3.255725 CAGCCCATTTAAGCAACACATG 58.744 45.455 0.00 0.00 0.00 3.21
205 206 7.928908 CAACACATGCATTTTAACTTACAGT 57.071 32.000 0.00 0.00 0.00 3.55
207 208 8.901748 CAACACATGCATTTTAACTTACAGTAC 58.098 33.333 0.00 0.00 0.00 2.73
208 209 8.160521 ACACATGCATTTTAACTTACAGTACA 57.839 30.769 0.00 0.00 0.00 2.90
209 210 8.289618 ACACATGCATTTTAACTTACAGTACAG 58.710 33.333 0.00 0.00 0.00 2.74
210 211 8.289618 CACATGCATTTTAACTTACAGTACAGT 58.710 33.333 0.00 0.00 0.00 3.55
211 212 9.496873 ACATGCATTTTAACTTACAGTACAGTA 57.503 29.630 0.00 0.00 0.00 2.74
222 223 7.960262 ACTTACAGTACAGTAATATAAGGGGC 58.040 38.462 10.84 0.00 33.82 5.80
223 224 5.820404 ACAGTACAGTAATATAAGGGGCC 57.180 43.478 0.00 0.00 0.00 5.80
224 225 5.221303 ACAGTACAGTAATATAAGGGGCCA 58.779 41.667 4.39 0.00 0.00 5.36
225 226 5.850028 ACAGTACAGTAATATAAGGGGCCAT 59.150 40.000 4.39 0.00 0.00 4.40
226 227 7.020629 ACAGTACAGTAATATAAGGGGCCATA 58.979 38.462 4.39 0.00 0.00 2.74
227 228 7.682890 ACAGTACAGTAATATAAGGGGCCATAT 59.317 37.037 4.39 6.07 0.00 1.78
228 229 8.548877 CAGTACAGTAATATAAGGGGCCATATT 58.451 37.037 4.39 9.23 33.17 1.28
229 230 9.124104 AGTACAGTAATATAAGGGGCCATATTT 57.876 33.333 4.39 4.09 31.47 1.40
230 231 9.174166 GTACAGTAATATAAGGGGCCATATTTG 57.826 37.037 4.39 5.68 31.47 2.32
231 232 7.182060 ACAGTAATATAAGGGGCCATATTTGG 58.818 38.462 4.39 0.00 46.66 3.28
232 233 6.607198 CAGTAATATAAGGGGCCATATTTGGG 59.393 42.308 4.39 0.00 43.84 4.12
233 234 5.894715 AATATAAGGGGCCATATTTGGGA 57.105 39.130 4.39 0.00 43.84 4.37
234 235 3.833559 ATAAGGGGCCATATTTGGGAG 57.166 47.619 4.39 0.00 43.84 4.30
235 236 1.619298 AAGGGGCCATATTTGGGAGA 58.381 50.000 4.39 0.00 43.84 3.71
236 237 1.852301 AGGGGCCATATTTGGGAGAT 58.148 50.000 4.39 0.00 43.84 2.75
237 238 3.018236 AGGGGCCATATTTGGGAGATA 57.982 47.619 4.39 0.00 43.84 1.98
238 239 3.345087 AGGGGCCATATTTGGGAGATAA 58.655 45.455 4.39 0.00 43.84 1.75
239 240 3.732204 AGGGGCCATATTTGGGAGATAAA 59.268 43.478 4.39 0.00 43.84 1.40
240 241 4.089361 GGGGCCATATTTGGGAGATAAAG 58.911 47.826 4.39 0.00 43.84 1.85
241 242 3.511540 GGGCCATATTTGGGAGATAAAGC 59.488 47.826 4.39 0.00 43.84 3.51
242 243 3.191371 GGCCATATTTGGGAGATAAAGCG 59.809 47.826 0.00 0.00 43.84 4.68
243 244 3.821033 GCCATATTTGGGAGATAAAGCGT 59.179 43.478 4.23 0.00 43.84 5.07
244 245 4.278419 GCCATATTTGGGAGATAAAGCGTT 59.722 41.667 4.23 0.00 43.84 4.84
245 246 5.221244 GCCATATTTGGGAGATAAAGCGTTT 60.221 40.000 4.23 0.00 43.84 3.60
246 247 6.208644 CCATATTTGGGAGATAAAGCGTTTG 58.791 40.000 0.00 0.00 39.56 2.93
247 248 4.718940 ATTTGGGAGATAAAGCGTTTGG 57.281 40.909 0.00 0.00 0.00 3.28
248 249 3.426787 TTGGGAGATAAAGCGTTTGGA 57.573 42.857 0.00 0.00 0.00 3.53
249 250 3.644966 TGGGAGATAAAGCGTTTGGAT 57.355 42.857 0.00 0.00 0.00 3.41
250 251 3.278574 TGGGAGATAAAGCGTTTGGATG 58.721 45.455 0.00 0.00 0.00 3.51
251 252 2.618709 GGGAGATAAAGCGTTTGGATGG 59.381 50.000 0.00 0.00 0.00 3.51
252 253 3.541632 GGAGATAAAGCGTTTGGATGGA 58.458 45.455 0.00 0.00 0.00 3.41
253 254 3.561725 GGAGATAAAGCGTTTGGATGGAG 59.438 47.826 0.00 0.00 0.00 3.86
254 255 4.192317 GAGATAAAGCGTTTGGATGGAGT 58.808 43.478 0.00 0.00 0.00 3.85
255 256 3.941483 AGATAAAGCGTTTGGATGGAGTG 59.059 43.478 0.00 0.00 0.00 3.51
256 257 1.247567 AAAGCGTTTGGATGGAGTGG 58.752 50.000 0.00 0.00 0.00 4.00
257 258 1.244019 AAGCGTTTGGATGGAGTGGC 61.244 55.000 0.00 0.00 0.00 5.01
258 259 1.675641 GCGTTTGGATGGAGTGGCT 60.676 57.895 0.00 0.00 0.00 4.75
259 260 0.392461 GCGTTTGGATGGAGTGGCTA 60.392 55.000 0.00 0.00 0.00 3.93
260 261 1.369625 CGTTTGGATGGAGTGGCTAC 58.630 55.000 0.00 0.00 0.00 3.58
261 262 1.751437 GTTTGGATGGAGTGGCTACC 58.249 55.000 0.00 0.00 0.00 3.18
262 263 1.004277 GTTTGGATGGAGTGGCTACCA 59.996 52.381 0.00 0.00 40.57 3.25
274 275 1.207089 TGGCTACCACATGACACTAGC 59.793 52.381 0.00 3.96 0.00 3.42
275 276 1.473434 GGCTACCACATGACACTAGCC 60.473 57.143 15.05 15.05 42.02 3.93
276 277 1.482593 GCTACCACATGACACTAGCCT 59.517 52.381 0.00 0.00 0.00 4.58
277 278 2.693591 GCTACCACATGACACTAGCCTA 59.306 50.000 0.00 0.00 0.00 3.93
278 279 3.491104 GCTACCACATGACACTAGCCTAC 60.491 52.174 0.00 0.00 0.00 3.18
279 280 2.821437 ACCACATGACACTAGCCTACT 58.179 47.619 0.00 0.00 0.00 2.57
280 281 3.173965 ACCACATGACACTAGCCTACTT 58.826 45.455 0.00 0.00 0.00 2.24
281 282 3.055819 ACCACATGACACTAGCCTACTTG 60.056 47.826 0.00 0.00 0.00 3.16
282 283 3.195610 CCACATGACACTAGCCTACTTGA 59.804 47.826 0.00 0.00 0.00 3.02
283 284 4.141846 CCACATGACACTAGCCTACTTGAT 60.142 45.833 0.00 0.00 0.00 2.57
284 285 4.807834 CACATGACACTAGCCTACTTGATG 59.192 45.833 0.00 0.00 0.00 3.07
285 286 4.467795 ACATGACACTAGCCTACTTGATGT 59.532 41.667 0.00 0.00 0.00 3.06
286 287 4.720649 TGACACTAGCCTACTTGATGTC 57.279 45.455 0.00 0.00 34.11 3.06
287 288 3.128764 TGACACTAGCCTACTTGATGTCG 59.871 47.826 0.00 0.00 35.10 4.35
288 289 2.159226 ACACTAGCCTACTTGATGTCGC 60.159 50.000 0.00 0.00 0.00 5.19
289 290 2.100197 ACTAGCCTACTTGATGTCGCA 58.900 47.619 0.00 0.00 0.00 5.10
290 291 2.099921 ACTAGCCTACTTGATGTCGCAG 59.900 50.000 0.00 0.00 0.00 5.18
291 292 0.176680 AGCCTACTTGATGTCGCAGG 59.823 55.000 0.00 0.00 0.00 4.85
292 293 0.108138 GCCTACTTGATGTCGCAGGT 60.108 55.000 0.00 0.00 32.52 4.00
293 294 1.676014 GCCTACTTGATGTCGCAGGTT 60.676 52.381 0.00 0.00 30.29 3.50
294 295 2.271800 CCTACTTGATGTCGCAGGTTC 58.728 52.381 0.00 0.00 30.29 3.62
295 296 2.353704 CCTACTTGATGTCGCAGGTTCA 60.354 50.000 0.00 0.00 30.29 3.18
296 297 2.254546 ACTTGATGTCGCAGGTTCAA 57.745 45.000 0.00 0.00 0.00 2.69
297 298 2.571212 ACTTGATGTCGCAGGTTCAAA 58.429 42.857 0.00 0.00 0.00 2.69
298 299 3.149196 ACTTGATGTCGCAGGTTCAAAT 58.851 40.909 0.00 0.00 0.00 2.32
299 300 3.189287 ACTTGATGTCGCAGGTTCAAATC 59.811 43.478 0.00 0.00 0.00 2.17
300 301 2.083774 TGATGTCGCAGGTTCAAATCC 58.916 47.619 0.00 0.00 0.00 3.01
301 302 2.290260 TGATGTCGCAGGTTCAAATCCT 60.290 45.455 0.00 0.00 35.45 3.24
302 303 3.055458 TGATGTCGCAGGTTCAAATCCTA 60.055 43.478 0.00 0.00 33.54 2.94
303 304 3.627395 TGTCGCAGGTTCAAATCCTAT 57.373 42.857 0.00 0.00 33.54 2.57
304 305 3.950397 TGTCGCAGGTTCAAATCCTATT 58.050 40.909 0.00 0.00 33.54 1.73
305 306 3.689161 TGTCGCAGGTTCAAATCCTATTG 59.311 43.478 0.00 0.00 33.54 1.90
306 307 3.065371 GTCGCAGGTTCAAATCCTATTGG 59.935 47.826 0.00 0.00 33.54 3.16
307 308 2.358898 CGCAGGTTCAAATCCTATTGGG 59.641 50.000 0.00 0.00 33.54 4.12
308 309 2.101415 GCAGGTTCAAATCCTATTGGGC 59.899 50.000 0.00 0.00 33.54 5.36
309 310 2.695147 CAGGTTCAAATCCTATTGGGCC 59.305 50.000 0.00 0.00 33.54 5.80
310 311 2.314549 AGGTTCAAATCCTATTGGGCCA 59.685 45.455 0.00 0.00 33.04 5.36
311 312 3.051880 AGGTTCAAATCCTATTGGGCCAT 60.052 43.478 7.26 0.00 33.04 4.40
312 313 4.169856 AGGTTCAAATCCTATTGGGCCATA 59.830 41.667 7.26 0.00 33.04 2.74
313 314 4.898861 GGTTCAAATCCTATTGGGCCATAA 59.101 41.667 7.26 0.00 34.39 1.90
314 315 5.543790 GGTTCAAATCCTATTGGGCCATAAT 59.456 40.000 7.26 7.43 34.39 1.28
315 316 6.723977 GGTTCAAATCCTATTGGGCCATAATA 59.276 38.462 7.26 8.27 34.39 0.98
316 317 7.400052 GGTTCAAATCCTATTGGGCCATAATAT 59.600 37.037 7.26 0.00 34.39 1.28
317 318 8.815912 GTTCAAATCCTATTGGGCCATAATATT 58.184 33.333 7.26 1.27 34.39 1.28
318 319 8.971032 TCAAATCCTATTGGGCCATAATATTT 57.029 30.769 7.26 7.73 34.39 1.40
319 320 9.391227 TCAAATCCTATTGGGCCATAATATTTT 57.609 29.630 7.26 1.49 34.39 1.82
322 323 9.619842 AATCCTATTGGGCCATAATATTTTTCT 57.380 29.630 7.26 0.00 34.39 2.52
323 324 9.619842 ATCCTATTGGGCCATAATATTTTTCTT 57.380 29.630 7.26 0.00 34.39 2.52
324 325 9.445973 TCCTATTGGGCCATAATATTTTTCTTT 57.554 29.630 7.26 0.00 34.39 2.52
325 326 9.710900 CCTATTGGGCCATAATATTTTTCTTTC 57.289 33.333 7.26 0.00 0.00 2.62
329 330 9.972106 TTGGGCCATAATATTTTTCTTTCAATT 57.028 25.926 7.26 0.00 0.00 2.32
330 331 9.972106 TGGGCCATAATATTTTTCTTTCAATTT 57.028 25.926 0.00 0.00 0.00 1.82
345 346 9.965824 TTCTTTCAATTTTCCTTATGAACTGAC 57.034 29.630 0.00 0.00 31.96 3.51
346 347 9.130661 TCTTTCAATTTTCCTTATGAACTGACA 57.869 29.630 0.00 0.00 31.96 3.58
347 348 9.748708 CTTTCAATTTTCCTTATGAACTGACAA 57.251 29.630 0.00 0.00 31.96 3.18
348 349 9.748708 TTTCAATTTTCCTTATGAACTGACAAG 57.251 29.630 0.00 0.00 31.96 3.16
349 350 7.370383 TCAATTTTCCTTATGAACTGACAAGC 58.630 34.615 0.00 0.00 31.05 4.01
350 351 6.899393 ATTTTCCTTATGAACTGACAAGCA 57.101 33.333 0.00 0.00 31.05 3.91
358 359 4.386413 CTGACAAGCAGGACCCAC 57.614 61.111 0.00 0.00 41.07 4.61
359 360 1.757306 CTGACAAGCAGGACCCACT 59.243 57.895 0.00 0.00 41.07 4.00
360 361 0.976641 CTGACAAGCAGGACCCACTA 59.023 55.000 0.00 0.00 41.07 2.74
361 362 0.976641 TGACAAGCAGGACCCACTAG 59.023 55.000 0.00 0.00 0.00 2.57
362 363 0.977395 GACAAGCAGGACCCACTAGT 59.023 55.000 0.00 0.00 0.00 2.57
363 364 0.977395 ACAAGCAGGACCCACTAGTC 59.023 55.000 0.00 0.00 35.95 2.59
364 365 0.976641 CAAGCAGGACCCACTAGTCA 59.023 55.000 0.00 0.00 38.59 3.41
365 366 1.556911 CAAGCAGGACCCACTAGTCAT 59.443 52.381 0.00 0.00 38.59 3.06
366 367 2.766263 CAAGCAGGACCCACTAGTCATA 59.234 50.000 0.00 0.00 38.59 2.15
367 368 3.336509 AGCAGGACCCACTAGTCATAT 57.663 47.619 0.00 0.00 38.59 1.78
368 369 4.471078 AGCAGGACCCACTAGTCATATA 57.529 45.455 0.00 0.00 38.59 0.86
369 370 4.411927 AGCAGGACCCACTAGTCATATAG 58.588 47.826 0.00 0.00 38.59 1.31
370 371 4.106502 AGCAGGACCCACTAGTCATATAGA 59.893 45.833 0.00 0.00 38.59 1.98
414 415 2.561478 TTTGTCTCTACAAGTGGGCC 57.439 50.000 0.00 0.00 45.99 5.80
415 416 0.690762 TTGTCTCTACAAGTGGGCCC 59.309 55.000 17.59 17.59 40.69 5.80
416 417 1.198759 TGTCTCTACAAGTGGGCCCC 61.199 60.000 22.27 11.17 30.91 5.80
417 418 1.159905 TCTCTACAAGTGGGCCCCA 59.840 57.895 22.27 0.00 0.00 4.96
418 419 0.253160 TCTCTACAAGTGGGCCCCAT 60.253 55.000 22.27 4.19 35.28 4.00
419 420 0.107017 CTCTACAAGTGGGCCCCATG 60.107 60.000 22.27 17.92 35.28 3.66
420 421 1.754234 CTACAAGTGGGCCCCATGC 60.754 63.158 22.27 7.01 35.28 4.06
421 422 3.636929 TACAAGTGGGCCCCATGCG 62.637 63.158 22.27 6.54 42.61 4.73
422 423 4.738998 CAAGTGGGCCCCATGCGA 62.739 66.667 22.27 0.00 42.61 5.10
423 424 3.978193 AAGTGGGCCCCATGCGAA 61.978 61.111 22.27 0.00 42.61 4.70
424 425 3.944250 AAGTGGGCCCCATGCGAAG 62.944 63.158 22.27 0.00 42.61 3.79
425 426 4.740822 GTGGGCCCCATGCGAAGT 62.741 66.667 22.27 0.00 42.61 3.01
426 427 4.424711 TGGGCCCCATGCGAAGTC 62.425 66.667 22.27 0.00 42.61 3.01
427 428 4.424711 GGGCCCCATGCGAAGTCA 62.425 66.667 12.23 0.00 42.61 3.41
428 429 2.825836 GGCCCCATGCGAAGTCAG 60.826 66.667 0.00 0.00 42.61 3.51
429 430 3.512516 GCCCCATGCGAAGTCAGC 61.513 66.667 0.00 0.00 0.00 4.26
430 431 2.825836 CCCCATGCGAAGTCAGCC 60.826 66.667 0.00 0.00 0.00 4.85
431 432 2.046023 CCCATGCGAAGTCAGCCA 60.046 61.111 0.00 0.00 0.00 4.75
432 433 1.675310 CCCATGCGAAGTCAGCCAA 60.675 57.895 0.00 0.00 0.00 4.52
433 434 1.243342 CCCATGCGAAGTCAGCCAAA 61.243 55.000 0.00 0.00 0.00 3.28
434 435 0.813184 CCATGCGAAGTCAGCCAAAT 59.187 50.000 0.00 0.00 0.00 2.32
435 436 2.016318 CCATGCGAAGTCAGCCAAATA 58.984 47.619 0.00 0.00 0.00 1.40
436 437 2.620115 CCATGCGAAGTCAGCCAAATAT 59.380 45.455 0.00 0.00 0.00 1.28
437 438 3.549423 CCATGCGAAGTCAGCCAAATATG 60.549 47.826 0.00 0.00 0.00 1.78
448 449 0.738389 CCAAATATGGTGCCACGTCC 59.262 55.000 0.00 0.00 42.18 4.79
449 450 0.376852 CAAATATGGTGCCACGTCCG 59.623 55.000 0.00 0.00 0.00 4.79
450 451 1.373590 AAATATGGTGCCACGTCCGC 61.374 55.000 0.00 0.00 0.00 5.54
451 452 2.529454 AATATGGTGCCACGTCCGCA 62.529 55.000 2.73 2.73 0.00 5.69
456 457 4.539083 TGCCACGTCCGCACAGTT 62.539 61.111 2.73 0.00 0.00 3.16
457 458 3.276846 GCCACGTCCGCACAGTTT 61.277 61.111 0.00 0.00 0.00 2.66
458 459 1.957186 GCCACGTCCGCACAGTTTA 60.957 57.895 0.00 0.00 0.00 2.01
459 460 1.857364 CCACGTCCGCACAGTTTAC 59.143 57.895 0.00 0.00 0.00 2.01
460 461 1.485514 CACGTCCGCACAGTTTACG 59.514 57.895 0.00 0.00 39.37 3.18
461 462 1.066257 ACGTCCGCACAGTTTACGT 59.934 52.632 0.00 0.00 41.55 3.57
462 463 0.936297 ACGTCCGCACAGTTTACGTC 60.936 55.000 0.00 0.00 42.62 4.34
463 464 0.662374 CGTCCGCACAGTTTACGTCT 60.662 55.000 0.00 0.00 0.00 4.18
464 465 1.400113 CGTCCGCACAGTTTACGTCTA 60.400 52.381 0.00 0.00 0.00 2.59
465 466 1.981533 GTCCGCACAGTTTACGTCTAC 59.018 52.381 0.00 0.00 0.00 2.59
466 467 1.608109 TCCGCACAGTTTACGTCTACA 59.392 47.619 0.00 0.00 0.00 2.74
467 468 2.034432 TCCGCACAGTTTACGTCTACAA 59.966 45.455 0.00 0.00 0.00 2.41
468 469 2.796031 CCGCACAGTTTACGTCTACAAA 59.204 45.455 0.00 0.00 0.00 2.83
469 470 3.430895 CCGCACAGTTTACGTCTACAAAT 59.569 43.478 0.00 0.00 0.00 2.32
470 471 4.382831 CGCACAGTTTACGTCTACAAATG 58.617 43.478 0.00 0.00 0.00 2.32
471 472 4.149221 CGCACAGTTTACGTCTACAAATGA 59.851 41.667 0.00 0.00 0.00 2.57
472 473 5.609088 GCACAGTTTACGTCTACAAATGAG 58.391 41.667 0.00 0.00 0.00 2.90
473 474 5.404366 GCACAGTTTACGTCTACAAATGAGA 59.596 40.000 0.00 0.00 0.00 3.27
474 475 6.090898 GCACAGTTTACGTCTACAAATGAGAT 59.909 38.462 0.00 0.00 0.00 2.75
475 476 7.360101 GCACAGTTTACGTCTACAAATGAGATT 60.360 37.037 0.00 0.00 0.00 2.40
476 477 9.135843 CACAGTTTACGTCTACAAATGAGATTA 57.864 33.333 0.00 0.00 0.00 1.75
477 478 9.355215 ACAGTTTACGTCTACAAATGAGATTAG 57.645 33.333 0.00 0.00 0.00 1.73
478 479 9.355215 CAGTTTACGTCTACAAATGAGATTAGT 57.645 33.333 0.00 0.00 0.00 2.24
481 482 9.793252 TTTACGTCTACAAATGAGATTAGTACC 57.207 33.333 0.00 0.00 0.00 3.34
482 483 6.493116 ACGTCTACAAATGAGATTAGTACCG 58.507 40.000 0.00 0.00 0.00 4.02
483 484 6.094603 ACGTCTACAAATGAGATTAGTACCGT 59.905 38.462 0.00 0.00 0.00 4.83
484 485 7.280876 ACGTCTACAAATGAGATTAGTACCGTA 59.719 37.037 0.00 0.00 0.00 4.02
485 486 8.288208 CGTCTACAAATGAGATTAGTACCGTAT 58.712 37.037 0.00 0.00 0.00 3.06
486 487 9.962783 GTCTACAAATGAGATTAGTACCGTATT 57.037 33.333 0.00 0.00 0.00 1.89
489 490 7.916552 ACAAATGAGATTAGTACCGTATTTGC 58.083 34.615 0.00 0.00 37.63 3.68
490 491 7.551262 ACAAATGAGATTAGTACCGTATTTGCA 59.449 33.333 0.00 0.00 37.63 4.08
491 492 8.559536 CAAATGAGATTAGTACCGTATTTGCAT 58.440 33.333 0.00 0.00 30.60 3.96
492 493 7.658179 ATGAGATTAGTACCGTATTTGCATG 57.342 36.000 0.00 0.00 0.00 4.06
493 494 6.578944 TGAGATTAGTACCGTATTTGCATGT 58.421 36.000 0.00 0.00 0.00 3.21
494 495 7.045416 TGAGATTAGTACCGTATTTGCATGTT 58.955 34.615 0.00 0.00 0.00 2.71
495 496 7.223971 TGAGATTAGTACCGTATTTGCATGTTC 59.776 37.037 0.00 0.00 0.00 3.18
496 497 7.045416 AGATTAGTACCGTATTTGCATGTTCA 58.955 34.615 0.00 0.00 0.00 3.18
497 498 7.715249 AGATTAGTACCGTATTTGCATGTTCAT 59.285 33.333 0.00 0.00 0.00 2.57
498 499 5.484173 AGTACCGTATTTGCATGTTCATG 57.516 39.130 8.26 8.26 0.00 3.07
510 511 5.300969 GCATGTTCATGCTAAGTTTGAGA 57.699 39.130 24.69 0.00 43.79 3.27
511 512 5.702865 GCATGTTCATGCTAAGTTTGAGAA 58.297 37.500 24.69 0.00 43.79 2.87
512 513 5.570589 GCATGTTCATGCTAAGTTTGAGAAC 59.429 40.000 24.69 0.00 43.79 3.01
513 514 5.689383 TGTTCATGCTAAGTTTGAGAACC 57.311 39.130 0.00 0.00 36.39 3.62
514 515 5.129634 TGTTCATGCTAAGTTTGAGAACCA 58.870 37.500 0.00 0.00 36.39 3.67
515 516 5.239306 TGTTCATGCTAAGTTTGAGAACCAG 59.761 40.000 0.00 0.00 36.39 4.00
516 517 4.326826 TCATGCTAAGTTTGAGAACCAGG 58.673 43.478 0.00 0.00 36.39 4.45
517 518 3.857157 TGCTAAGTTTGAGAACCAGGT 57.143 42.857 0.00 0.00 36.39 4.00
518 519 4.164843 TGCTAAGTTTGAGAACCAGGTT 57.835 40.909 3.79 3.79 36.39 3.50
519 520 5.298989 TGCTAAGTTTGAGAACCAGGTTA 57.701 39.130 4.25 0.00 36.39 2.85
520 521 5.686753 TGCTAAGTTTGAGAACCAGGTTAA 58.313 37.500 4.25 0.00 36.39 2.01
521 522 6.303839 TGCTAAGTTTGAGAACCAGGTTAAT 58.696 36.000 4.25 0.00 36.39 1.40
522 523 6.206634 TGCTAAGTTTGAGAACCAGGTTAATG 59.793 38.462 4.25 0.00 36.39 1.90
523 524 6.206829 GCTAAGTTTGAGAACCAGGTTAATGT 59.793 38.462 4.25 0.00 36.39 2.71
524 525 7.389607 GCTAAGTTTGAGAACCAGGTTAATGTA 59.610 37.037 4.25 0.00 36.39 2.29
525 526 9.449719 CTAAGTTTGAGAACCAGGTTAATGTAT 57.550 33.333 4.25 0.00 36.39 2.29
526 527 8.706322 AAGTTTGAGAACCAGGTTAATGTATT 57.294 30.769 4.25 0.00 36.39 1.89
527 528 8.706322 AGTTTGAGAACCAGGTTAATGTATTT 57.294 30.769 4.25 0.00 36.39 1.40
528 529 9.143155 AGTTTGAGAACCAGGTTAATGTATTTT 57.857 29.630 4.25 0.00 36.39 1.82
529 530 9.758651 GTTTGAGAACCAGGTTAATGTATTTTT 57.241 29.630 4.25 0.00 0.00 1.94
530 531 9.974980 TTTGAGAACCAGGTTAATGTATTTTTC 57.025 29.630 4.25 0.00 0.00 2.29
531 532 8.698973 TGAGAACCAGGTTAATGTATTTTTCA 57.301 30.769 4.25 0.00 0.00 2.69
532 533 9.137459 TGAGAACCAGGTTAATGTATTTTTCAA 57.863 29.630 4.25 0.00 0.00 2.69
533 534 9.626045 GAGAACCAGGTTAATGTATTTTTCAAG 57.374 33.333 4.25 0.00 0.00 3.02
534 535 9.143155 AGAACCAGGTTAATGTATTTTTCAAGT 57.857 29.630 4.25 0.00 0.00 3.16
535 536 9.758651 GAACCAGGTTAATGTATTTTTCAAGTT 57.241 29.630 4.25 0.00 0.00 2.66
536 537 9.758651 AACCAGGTTAATGTATTTTTCAAGTTC 57.241 29.630 1.71 0.00 0.00 3.01
537 538 8.919145 ACCAGGTTAATGTATTTTTCAAGTTCA 58.081 29.630 0.00 0.00 0.00 3.18
538 539 9.410556 CCAGGTTAATGTATTTTTCAAGTTCAG 57.589 33.333 0.00 0.00 0.00 3.02
539 540 9.410556 CAGGTTAATGTATTTTTCAAGTTCAGG 57.589 33.333 0.00 0.00 0.00 3.86
540 541 8.088365 AGGTTAATGTATTTTTCAAGTTCAGGC 58.912 33.333 0.00 0.00 0.00 4.85
541 542 7.870445 GGTTAATGTATTTTTCAAGTTCAGGCA 59.130 33.333 0.00 0.00 0.00 4.75
542 543 8.699749 GTTAATGTATTTTTCAAGTTCAGGCAC 58.300 33.333 0.00 0.00 0.00 5.01
543 544 6.655078 ATGTATTTTTCAAGTTCAGGCACT 57.345 33.333 0.00 0.00 43.88 4.40
544 545 7.759489 ATGTATTTTTCAAGTTCAGGCACTA 57.241 32.000 0.00 0.00 36.02 2.74
545 546 7.575414 TGTATTTTTCAAGTTCAGGCACTAA 57.425 32.000 0.00 0.00 36.02 2.24
546 547 8.001881 TGTATTTTTCAAGTTCAGGCACTAAA 57.998 30.769 0.00 0.00 36.02 1.85
547 548 8.134895 TGTATTTTTCAAGTTCAGGCACTAAAG 58.865 33.333 0.00 0.00 36.02 1.85
548 549 6.524101 TTTTTCAAGTTCAGGCACTAAAGT 57.476 33.333 0.00 0.00 36.02 2.66
564 565 6.992063 ACTAAAGTGAACATCTATGGCAAG 57.008 37.500 0.00 0.00 0.00 4.01
565 566 6.476378 ACTAAAGTGAACATCTATGGCAAGT 58.524 36.000 0.00 0.00 0.00 3.16
566 567 6.942576 ACTAAAGTGAACATCTATGGCAAGTT 59.057 34.615 0.00 0.00 0.00 2.66
567 568 5.886960 AAGTGAACATCTATGGCAAGTTC 57.113 39.130 0.00 2.35 39.11 3.01
568 569 4.910195 AGTGAACATCTATGGCAAGTTCA 58.090 39.130 14.43 14.43 44.25 3.18
569 570 5.316167 AGTGAACATCTATGGCAAGTTCAA 58.684 37.500 17.82 6.41 46.77 2.69
570 571 5.413833 AGTGAACATCTATGGCAAGTTCAAG 59.586 40.000 17.82 1.05 46.77 3.02
571 572 4.156556 TGAACATCTATGGCAAGTTCAAGC 59.843 41.667 15.43 0.00 43.71 4.01
572 573 3.689347 ACATCTATGGCAAGTTCAAGCA 58.311 40.909 0.00 0.00 0.00 3.91
573 574 3.441572 ACATCTATGGCAAGTTCAAGCAC 59.558 43.478 0.00 0.00 0.00 4.40
574 575 2.436417 TCTATGGCAAGTTCAAGCACC 58.564 47.619 0.00 0.00 0.00 5.01
575 576 2.161855 CTATGGCAAGTTCAAGCACCA 58.838 47.619 0.00 0.00 0.00 4.17
576 577 0.675633 ATGGCAAGTTCAAGCACCAC 59.324 50.000 0.00 0.00 0.00 4.16
577 578 0.395586 TGGCAAGTTCAAGCACCACT 60.396 50.000 0.00 0.00 0.00 4.00
578 579 1.133945 TGGCAAGTTCAAGCACCACTA 60.134 47.619 0.00 0.00 0.00 2.74
579 580 1.537202 GGCAAGTTCAAGCACCACTAG 59.463 52.381 0.00 0.00 0.00 2.57
580 581 2.222027 GCAAGTTCAAGCACCACTAGT 58.778 47.619 0.00 0.00 0.00 2.57
596 597 8.617290 CACCACTAGTGTTATTACCTCTTTTT 57.383 34.615 21.18 0.00 41.93 1.94
618 620 8.539770 TTTTTCTTTGAAACATAGTGCAAACA 57.460 26.923 0.00 0.00 0.00 2.83
624 626 8.484641 TTTGAAACATAGTGCAAACAAAATCA 57.515 26.923 0.00 0.00 0.00 2.57
627 629 9.755804 TGAAACATAGTGCAAACAAAATCATTA 57.244 25.926 0.00 0.00 0.00 1.90
679 681 8.609176 GCAAATAGTCCACGTAGAAAAATCATA 58.391 33.333 0.00 0.00 0.00 2.15
683 685 7.972832 AGTCCACGTAGAAAAATCATAACAA 57.027 32.000 0.00 0.00 0.00 2.83
706 708 7.071698 ACAATCTATCCTCCAAAGCTCATAAGA 59.928 37.037 0.00 0.00 0.00 2.10
707 709 7.623999 ATCTATCCTCCAAAGCTCATAAGAA 57.376 36.000 0.00 0.00 0.00 2.52
736 738 8.921205 CCTTTGAATCAAGGGAATCAAATAGAT 58.079 33.333 18.02 0.00 46.40 1.98
772 774 9.793259 TTCTTTGGAACATAGACTAACATCTTT 57.207 29.630 0.00 0.00 45.45 2.52
773 775 9.793259 TCTTTGGAACATAGACTAACATCTTTT 57.207 29.630 0.00 0.00 41.25 2.27
791 793 9.543783 ACATCTTTTATATACTCTTTCCGTTCC 57.456 33.333 0.00 0.00 0.00 3.62
792 794 9.542462 CATCTTTTATATACTCTTTCCGTTCCA 57.458 33.333 0.00 0.00 0.00 3.53
794 796 9.947433 TCTTTTATATACTCTTTCCGTTCCAAA 57.053 29.630 0.00 0.00 0.00 3.28
801 803 6.743575 ACTCTTTCCGTTCCAAAATAGATG 57.256 37.500 0.00 0.00 0.00 2.90
802 804 6.472887 ACTCTTTCCGTTCCAAAATAGATGA 58.527 36.000 0.00 0.00 0.00 2.92
803 805 6.371825 ACTCTTTCCGTTCCAAAATAGATGAC 59.628 38.462 0.00 0.00 0.00 3.06
804 806 6.472887 TCTTTCCGTTCCAAAATAGATGACT 58.527 36.000 0.00 0.00 0.00 3.41
805 807 6.594159 TCTTTCCGTTCCAAAATAGATGACTC 59.406 38.462 0.00 0.00 0.00 3.36
806 808 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
807 809 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
808 810 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
809 811 5.163754 CCGTTCCAAAATAGATGACTCAACC 60.164 44.000 0.00 0.00 0.00 3.77
810 812 5.643777 CGTTCCAAAATAGATGACTCAACCT 59.356 40.000 0.00 0.00 0.00 3.50
811 813 6.149474 CGTTCCAAAATAGATGACTCAACCTT 59.851 38.462 0.00 0.00 0.00 3.50
812 814 7.333423 CGTTCCAAAATAGATGACTCAACCTTA 59.667 37.037 0.00 0.00 0.00 2.69
813 815 9.178758 GTTCCAAAATAGATGACTCAACCTTAT 57.821 33.333 0.00 0.00 0.00 1.73
815 817 9.832445 TCCAAAATAGATGACTCAACCTTATAC 57.168 33.333 0.00 0.00 0.00 1.47
816 818 9.838339 CCAAAATAGATGACTCAACCTTATACT 57.162 33.333 0.00 0.00 0.00 2.12
866 868 9.667107 AAATTGAGTCATCTATTTTAGAACGGA 57.333 29.630 0.00 0.00 37.52 4.69
867 869 8.879342 ATTGAGTCATCTATTTTAGAACGGAG 57.121 34.615 0.00 0.00 38.50 4.63
868 870 6.806751 TGAGTCATCTATTTTAGAACGGAGG 58.193 40.000 0.00 0.00 38.50 4.30
869 871 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
870 872 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
871 873 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
965 967 2.033151 GTCACCGTTTTCTGTTCCTTCG 60.033 50.000 0.00 0.00 0.00 3.79
1184 1186 0.387367 ATTCGAGGATTCGGATCGCG 60.387 55.000 0.00 0.00 41.15 5.87
1193 1195 2.345880 TTCGGATCGCGCCTTAGGTC 62.346 60.000 0.00 0.00 0.00 3.85
1271 1273 4.994201 GTCGCTGCCGTCGTGACA 62.994 66.667 0.41 0.00 40.59 3.58
1425 1427 3.090037 CCGTTCTCCTAGTCTTCTCCAA 58.910 50.000 0.00 0.00 0.00 3.53
1441 1443 2.874701 CTCCAAATCGAGGCTATTGTGG 59.125 50.000 0.00 0.00 0.00 4.17
1442 1444 2.238646 TCCAAATCGAGGCTATTGTGGT 59.761 45.455 0.00 0.00 0.00 4.16
1443 1445 2.355756 CCAAATCGAGGCTATTGTGGTG 59.644 50.000 0.00 0.00 0.00 4.17
1444 1446 1.668419 AATCGAGGCTATTGTGGTGC 58.332 50.000 0.00 0.00 0.00 5.01
1445 1447 0.179045 ATCGAGGCTATTGTGGTGCC 60.179 55.000 0.00 0.00 46.42 5.01
1448 1450 4.312052 GGCTATTGTGGTGCCGAA 57.688 55.556 0.00 0.00 37.11 4.30
1449 1451 2.793831 GGCTATTGTGGTGCCGAAT 58.206 52.632 0.00 0.00 37.11 3.34
1450 1452 0.381801 GGCTATTGTGGTGCCGAATG 59.618 55.000 0.00 0.00 37.11 2.67
1451 1453 1.094785 GCTATTGTGGTGCCGAATGT 58.905 50.000 0.00 0.00 0.00 2.71
1452 1454 2.285083 GCTATTGTGGTGCCGAATGTA 58.715 47.619 0.00 0.00 0.00 2.29
1453 1455 2.287915 GCTATTGTGGTGCCGAATGTAG 59.712 50.000 0.00 0.00 0.00 2.74
1454 1456 1.750193 ATTGTGGTGCCGAATGTAGG 58.250 50.000 0.00 0.00 0.00 3.18
1455 1457 0.687920 TTGTGGTGCCGAATGTAGGA 59.312 50.000 0.00 0.00 0.00 2.94
1456 1458 0.249120 TGTGGTGCCGAATGTAGGAG 59.751 55.000 0.00 0.00 0.00 3.69
1457 1459 0.462047 GTGGTGCCGAATGTAGGAGG 60.462 60.000 0.00 0.00 0.00 4.30
1458 1460 0.616395 TGGTGCCGAATGTAGGAGGA 60.616 55.000 0.00 0.00 0.00 3.71
1459 1461 0.759346 GGTGCCGAATGTAGGAGGAT 59.241 55.000 0.00 0.00 0.00 3.24
1636 1638 0.685660 TCAAATTGCCAGCATTGCCA 59.314 45.000 4.70 0.00 0.00 4.92
1647 1649 3.928375 CCAGCATTGCCATTGTTTTAGTC 59.072 43.478 4.70 0.00 0.00 2.59
1648 1650 4.558178 CAGCATTGCCATTGTTTTAGTCA 58.442 39.130 4.70 0.00 0.00 3.41
1805 1853 5.675684 AACCAAATCAGGTCTTTTTGTGT 57.324 34.783 0.00 0.00 42.25 3.72
1824 1872 7.780008 TTGTGTCTATTTCATACGGTATTGG 57.220 36.000 0.00 0.00 0.00 3.16
1840 1888 1.823797 TTGGTACCGCACATTAACCC 58.176 50.000 7.57 0.00 0.00 4.11
1841 1889 0.691332 TGGTACCGCACATTAACCCA 59.309 50.000 7.57 0.00 0.00 4.51
1847 1895 3.658709 ACCGCACATTAACCCATTTTTG 58.341 40.909 0.00 0.00 0.00 2.44
1848 1896 3.070302 ACCGCACATTAACCCATTTTTGT 59.930 39.130 0.00 0.00 0.00 2.83
1936 1984 5.123344 TGCATGCTAGCATCATCATTCATAC 59.877 40.000 27.34 0.00 40.11 2.39
2367 2418 6.700081 TGAGCCAGTCAAATTACGACATATAC 59.300 38.462 9.81 1.38 35.77 1.47
2769 2820 1.552792 TGTGGTGTCTGTCTGTGTTCA 59.447 47.619 0.00 0.00 0.00 3.18
2958 3010 7.930513 TGATTATCAGCTTTACATAGTGTCG 57.069 36.000 0.00 0.00 0.00 4.35
3058 3111 9.722184 CTCAAACTGATCATATTCCATCACTAT 57.278 33.333 0.00 0.00 0.00 2.12
3113 3166 1.066071 GGAGTTGGTCTTCCTACTGGC 60.066 57.143 6.14 0.00 46.47 4.85
3123 3176 3.205507 TCTTCCTACTGGCATACCTCTCT 59.794 47.826 0.00 0.00 36.63 3.10
3182 3235 7.672983 TTCACAGAGAAACAGGTTGAATATC 57.327 36.000 0.00 0.00 32.05 1.63
3565 3658 2.806608 ACAAGTTGCATGAGCTTTGG 57.193 45.000 1.81 0.00 42.74 3.28
3579 3672 0.593128 CTTTGGGAAACGTCCTGCTG 59.407 55.000 0.00 0.00 44.28 4.41
3686 3781 3.553039 GCAAGCCCATTTGTTGCG 58.447 55.556 0.00 0.00 37.44 4.85
3687 3782 1.006337 GCAAGCCCATTTGTTGCGA 60.006 52.632 0.00 0.00 37.44 5.10
3715 3812 3.197766 TGATCATTACTCCACCCTGTGTC 59.802 47.826 0.00 0.00 0.00 3.67
3734 3831 7.329717 CCTGTGTCTCTAAAGTTCATCTGTAAC 59.670 40.741 0.00 0.00 0.00 2.50
3735 3832 7.952671 TGTGTCTCTAAAGTTCATCTGTAACT 58.047 34.615 0.00 0.00 38.82 2.24
3778 3875 5.817816 AGTTCTGTTAGGGCATATTTCTTCG 59.182 40.000 0.00 0.00 0.00 3.79
3850 3947 1.531423 AATGCACTTGCTGAGACTGG 58.469 50.000 2.33 0.00 42.66 4.00
3857 3954 2.173569 ACTTGCTGAGACTGGAAAACCT 59.826 45.455 0.00 0.00 0.00 3.50
3985 4082 6.361433 TCCATAACAAGGTGAGTTTTCTGAA 58.639 36.000 0.00 0.00 0.00 3.02
4147 4244 3.810941 TCAGTACAAATGTTTCCACGTCC 59.189 43.478 0.00 0.00 0.00 4.79
4235 4332 2.290960 GGGTCAACTTGGCTTGAGGTAT 60.291 50.000 0.00 0.00 30.63 2.73
4236 4333 2.749621 GGTCAACTTGGCTTGAGGTATG 59.250 50.000 0.00 0.00 30.63 2.39
4237 4334 3.559171 GGTCAACTTGGCTTGAGGTATGA 60.559 47.826 0.00 0.00 30.63 2.15
4238 4335 4.072131 GTCAACTTGGCTTGAGGTATGAA 58.928 43.478 0.00 0.00 30.63 2.57
4239 4336 4.072131 TCAACTTGGCTTGAGGTATGAAC 58.928 43.478 0.00 0.00 0.00 3.18
4240 4337 4.074970 CAACTTGGCTTGAGGTATGAACT 58.925 43.478 0.00 0.00 0.00 3.01
4241 4338 3.944087 ACTTGGCTTGAGGTATGAACTC 58.056 45.455 0.00 0.00 35.55 3.01
4242 4339 3.274288 CTTGGCTTGAGGTATGAACTCC 58.726 50.000 0.00 0.00 34.06 3.85
4243 4340 2.265367 TGGCTTGAGGTATGAACTCCA 58.735 47.619 0.00 0.00 34.06 3.86
4244 4341 2.846206 TGGCTTGAGGTATGAACTCCAT 59.154 45.455 0.00 0.00 39.25 3.41
4245 4342 3.266772 TGGCTTGAGGTATGAACTCCATT 59.733 43.478 0.00 0.00 36.71 3.16
4246 4343 4.263905 TGGCTTGAGGTATGAACTCCATTT 60.264 41.667 0.00 0.00 36.71 2.32
4247 4344 4.096984 GGCTTGAGGTATGAACTCCATTTG 59.903 45.833 0.00 0.00 36.71 2.32
4248 4345 4.096984 GCTTGAGGTATGAACTCCATTTGG 59.903 45.833 0.00 0.00 36.71 3.28
4249 4346 3.620488 TGAGGTATGAACTCCATTTGGC 58.380 45.455 0.00 0.00 36.71 4.52
4250 4347 3.010027 TGAGGTATGAACTCCATTTGGCA 59.990 43.478 0.00 0.00 36.71 4.92
4396 4509 1.508632 GTTTGCGTGGTCAGAAGCTA 58.491 50.000 0.00 0.00 0.00 3.32
4650 4766 3.634397 TCCAGATTGTCATCCTTGTCC 57.366 47.619 0.00 0.00 0.00 4.02
4800 4917 1.067295 TGAAGCAATGAGGGGTGACT 58.933 50.000 0.00 0.00 0.00 3.41
4801 4918 1.425066 TGAAGCAATGAGGGGTGACTT 59.575 47.619 0.00 0.00 0.00 3.01
4802 4919 2.158475 TGAAGCAATGAGGGGTGACTTT 60.158 45.455 0.00 0.00 0.00 2.66
4803 4920 2.206576 AGCAATGAGGGGTGACTTTC 57.793 50.000 0.00 0.00 0.00 2.62
4804 4921 0.804989 GCAATGAGGGGTGACTTTCG 59.195 55.000 0.00 0.00 0.00 3.46
4805 4922 0.804989 CAATGAGGGGTGACTTTCGC 59.195 55.000 0.00 0.00 0.00 4.70
4823 4940 2.121786 CGCAATGGCAAAGCATACATC 58.878 47.619 13.73 0.00 41.24 3.06
4847 4964 5.147162 CAAGAAGCCGATAACAAAACAGTC 58.853 41.667 0.00 0.00 0.00 3.51
4900 5017 8.783093 TCAGTTCAATTAGTATGTTTTCTGGTG 58.217 33.333 0.00 0.00 0.00 4.17
4931 5058 9.249053 TGCAATAACCATTCACCTATTTAGAAA 57.751 29.630 0.00 0.00 0.00 2.52
4939 5066 8.522830 CCATTCACCTATTTAGAAACACAACAT 58.477 33.333 0.00 0.00 0.00 2.71
4966 5093 5.354792 ACAACTTTCAACGGTAAGTTTGCTA 59.645 36.000 0.00 0.00 41.06 3.49
5022 5149 0.178981 ACCTGAACACAATGCTGCCT 60.179 50.000 0.00 0.00 0.00 4.75
5035 5162 5.106157 ACAATGCTGCCTAATGTTACAACTC 60.106 40.000 0.00 0.00 0.00 3.01
5073 5200 5.518128 GTGTATGAGTAGAACAGCAGATGTG 59.482 44.000 0.00 0.00 43.00 3.21
5088 5215 6.865726 CAGCAGATGTGGAAGTATACAGTATC 59.134 42.308 5.50 0.96 0.00 2.24
5321 5450 3.213206 TCTTCAGCTTTCTTGCCTTCA 57.787 42.857 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 7.484007 CGTAGTAATACAAACTGTACCACTCTG 59.516 40.741 0.78 0.00 35.42 3.35
139 140 9.208022 GTTAGTACGACCCATTTAGTACTTTTT 57.792 33.333 0.00 0.00 44.97 1.94
140 141 8.588472 AGTTAGTACGACCCATTTAGTACTTTT 58.412 33.333 0.00 0.00 44.97 2.27
141 142 8.031277 CAGTTAGTACGACCCATTTAGTACTTT 58.969 37.037 0.00 0.00 44.97 2.66
142 143 7.542025 CAGTTAGTACGACCCATTTAGTACTT 58.458 38.462 0.00 0.00 44.97 2.24
144 145 5.745769 GCAGTTAGTACGACCCATTTAGTAC 59.254 44.000 0.00 0.00 39.58 2.73
145 146 5.418524 TGCAGTTAGTACGACCCATTTAGTA 59.581 40.000 0.00 0.00 0.00 1.82
146 147 4.221262 TGCAGTTAGTACGACCCATTTAGT 59.779 41.667 0.00 0.00 0.00 2.24
147 148 4.751060 TGCAGTTAGTACGACCCATTTAG 58.249 43.478 0.00 0.00 0.00 1.85
148 149 4.751060 CTGCAGTTAGTACGACCCATTTA 58.249 43.478 5.25 0.00 0.00 1.40
149 150 3.596214 CTGCAGTTAGTACGACCCATTT 58.404 45.455 5.25 0.00 0.00 2.32
150 151 2.677037 GCTGCAGTTAGTACGACCCATT 60.677 50.000 16.64 0.00 0.00 3.16
151 152 1.134788 GCTGCAGTTAGTACGACCCAT 60.135 52.381 16.64 0.00 0.00 4.00
152 153 0.245539 GCTGCAGTTAGTACGACCCA 59.754 55.000 16.64 0.00 0.00 4.51
153 154 0.459759 GGCTGCAGTTAGTACGACCC 60.460 60.000 16.64 0.00 0.00 4.46
154 155 0.459759 GGGCTGCAGTTAGTACGACC 60.460 60.000 16.64 4.06 0.00 4.79
155 156 0.245539 TGGGCTGCAGTTAGTACGAC 59.754 55.000 16.64 0.00 0.00 4.34
156 157 1.191535 ATGGGCTGCAGTTAGTACGA 58.808 50.000 16.64 0.00 0.00 3.43
157 158 2.024176 AATGGGCTGCAGTTAGTACG 57.976 50.000 16.64 0.00 0.00 3.67
158 159 4.201920 GCTTAAATGGGCTGCAGTTAGTAC 60.202 45.833 16.64 0.00 0.00 2.73
159 160 3.945285 GCTTAAATGGGCTGCAGTTAGTA 59.055 43.478 16.64 0.00 0.00 1.82
160 161 2.755103 GCTTAAATGGGCTGCAGTTAGT 59.245 45.455 16.64 0.00 0.00 2.24
161 162 2.754552 TGCTTAAATGGGCTGCAGTTAG 59.245 45.455 16.64 0.00 0.00 2.34
162 163 2.801483 TGCTTAAATGGGCTGCAGTTA 58.199 42.857 16.64 2.44 0.00 2.24
163 164 1.631405 TGCTTAAATGGGCTGCAGTT 58.369 45.000 16.64 3.51 0.00 3.16
164 165 1.273327 GTTGCTTAAATGGGCTGCAGT 59.727 47.619 16.64 0.00 35.02 4.40
165 166 1.273048 TGTTGCTTAAATGGGCTGCAG 59.727 47.619 10.11 10.11 35.02 4.41
166 167 1.000731 GTGTTGCTTAAATGGGCTGCA 59.999 47.619 0.50 0.00 0.00 4.41
167 168 1.000731 TGTGTTGCTTAAATGGGCTGC 59.999 47.619 0.00 0.00 0.00 5.25
168 169 3.255725 CATGTGTTGCTTAAATGGGCTG 58.744 45.455 0.00 0.00 0.00 4.85
169 170 3.598019 CATGTGTTGCTTAAATGGGCT 57.402 42.857 0.00 0.00 0.00 5.19
198 199 7.015877 TGGCCCCTTATATTACTGTACTGTAAG 59.984 40.741 23.99 14.97 36.10 2.34
199 200 6.845446 TGGCCCCTTATATTACTGTACTGTAA 59.155 38.462 22.66 22.66 36.92 2.41
200 201 6.383763 TGGCCCCTTATATTACTGTACTGTA 58.616 40.000 8.40 8.40 0.00 2.74
201 202 5.221303 TGGCCCCTTATATTACTGTACTGT 58.779 41.667 10.46 10.46 0.00 3.55
202 203 5.818678 TGGCCCCTTATATTACTGTACTG 57.181 43.478 0.00 0.00 0.00 2.74
203 204 8.695663 AATATGGCCCCTTATATTACTGTACT 57.304 34.615 0.00 0.00 30.02 2.73
204 205 9.174166 CAAATATGGCCCCTTATATTACTGTAC 57.826 37.037 0.00 0.00 31.21 2.90
205 206 8.333235 CCAAATATGGCCCCTTATATTACTGTA 58.667 37.037 0.00 0.00 40.58 2.74
206 207 7.182060 CCAAATATGGCCCCTTATATTACTGT 58.818 38.462 0.00 0.00 40.58 3.55
207 208 6.607198 CCCAAATATGGCCCCTTATATTACTG 59.393 42.308 0.00 0.00 46.09 2.74
208 209 6.511083 TCCCAAATATGGCCCCTTATATTACT 59.489 38.462 0.00 0.00 46.09 2.24
209 210 6.737608 TCCCAAATATGGCCCCTTATATTAC 58.262 40.000 0.00 0.00 46.09 1.89
210 211 6.742886 TCTCCCAAATATGGCCCCTTATATTA 59.257 38.462 0.00 0.00 46.09 0.98
211 212 5.559545 TCTCCCAAATATGGCCCCTTATATT 59.440 40.000 0.00 0.00 46.09 1.28
212 213 5.115322 TCTCCCAAATATGGCCCCTTATAT 58.885 41.667 0.00 0.00 46.09 0.86
213 214 4.518283 TCTCCCAAATATGGCCCCTTATA 58.482 43.478 0.00 0.00 46.09 0.98
214 215 3.345087 TCTCCCAAATATGGCCCCTTAT 58.655 45.455 0.00 0.00 46.09 1.73
215 216 2.795556 TCTCCCAAATATGGCCCCTTA 58.204 47.619 0.00 0.00 46.09 2.69
216 217 1.619298 TCTCCCAAATATGGCCCCTT 58.381 50.000 0.00 0.00 46.09 3.95
217 218 1.852301 ATCTCCCAAATATGGCCCCT 58.148 50.000 0.00 0.00 46.09 4.79
218 219 3.825908 TTATCTCCCAAATATGGCCCC 57.174 47.619 0.00 0.00 46.09 5.80
219 220 3.511540 GCTTTATCTCCCAAATATGGCCC 59.488 47.826 0.00 0.00 46.09 5.80
220 221 3.191371 CGCTTTATCTCCCAAATATGGCC 59.809 47.826 0.00 0.00 46.09 5.36
221 222 3.821033 ACGCTTTATCTCCCAAATATGGC 59.179 43.478 0.00 0.00 46.09 4.40
223 224 6.039270 TCCAAACGCTTTATCTCCCAAATATG 59.961 38.462 0.00 0.00 0.00 1.78
224 225 6.126409 TCCAAACGCTTTATCTCCCAAATAT 58.874 36.000 0.00 0.00 0.00 1.28
225 226 5.502079 TCCAAACGCTTTATCTCCCAAATA 58.498 37.500 0.00 0.00 0.00 1.40
226 227 4.340617 TCCAAACGCTTTATCTCCCAAAT 58.659 39.130 0.00 0.00 0.00 2.32
227 228 3.757270 TCCAAACGCTTTATCTCCCAAA 58.243 40.909 0.00 0.00 0.00 3.28
228 229 3.426787 TCCAAACGCTTTATCTCCCAA 57.573 42.857 0.00 0.00 0.00 4.12
229 230 3.278574 CATCCAAACGCTTTATCTCCCA 58.721 45.455 0.00 0.00 0.00 4.37
230 231 2.618709 CCATCCAAACGCTTTATCTCCC 59.381 50.000 0.00 0.00 0.00 4.30
231 232 3.541632 TCCATCCAAACGCTTTATCTCC 58.458 45.455 0.00 0.00 0.00 3.71
232 233 4.034510 CACTCCATCCAAACGCTTTATCTC 59.965 45.833 0.00 0.00 0.00 2.75
233 234 3.941483 CACTCCATCCAAACGCTTTATCT 59.059 43.478 0.00 0.00 0.00 1.98
234 235 3.065371 CCACTCCATCCAAACGCTTTATC 59.935 47.826 0.00 0.00 0.00 1.75
235 236 3.016736 CCACTCCATCCAAACGCTTTAT 58.983 45.455 0.00 0.00 0.00 1.40
236 237 2.432444 CCACTCCATCCAAACGCTTTA 58.568 47.619 0.00 0.00 0.00 1.85
237 238 1.247567 CCACTCCATCCAAACGCTTT 58.752 50.000 0.00 0.00 0.00 3.51
238 239 1.244019 GCCACTCCATCCAAACGCTT 61.244 55.000 0.00 0.00 0.00 4.68
239 240 1.675641 GCCACTCCATCCAAACGCT 60.676 57.895 0.00 0.00 0.00 5.07
240 241 0.392461 TAGCCACTCCATCCAAACGC 60.392 55.000 0.00 0.00 0.00 4.84
241 242 1.369625 GTAGCCACTCCATCCAAACG 58.630 55.000 0.00 0.00 0.00 3.60
242 243 1.004277 TGGTAGCCACTCCATCCAAAC 59.996 52.381 0.00 0.00 0.00 2.93
243 244 1.367346 TGGTAGCCACTCCATCCAAA 58.633 50.000 0.00 0.00 0.00 3.28
244 245 3.096852 TGGTAGCCACTCCATCCAA 57.903 52.632 0.00 0.00 0.00 3.53
245 246 4.908333 TGGTAGCCACTCCATCCA 57.092 55.556 0.00 0.00 0.00 3.41
254 255 1.207089 GCTAGTGTCATGTGGTAGCCA 59.793 52.381 0.00 0.00 31.71 4.75
255 256 1.473434 GGCTAGTGTCATGTGGTAGCC 60.473 57.143 16.75 16.75 46.70 3.93
256 257 1.482593 AGGCTAGTGTCATGTGGTAGC 59.517 52.381 9.30 9.30 36.23 3.58
257 258 3.954904 AGTAGGCTAGTGTCATGTGGTAG 59.045 47.826 0.00 0.00 0.00 3.18
258 259 3.977312 AGTAGGCTAGTGTCATGTGGTA 58.023 45.455 0.00 0.00 0.00 3.25
259 260 2.821437 AGTAGGCTAGTGTCATGTGGT 58.179 47.619 0.00 0.00 0.00 4.16
260 261 3.195610 TCAAGTAGGCTAGTGTCATGTGG 59.804 47.826 1.88 0.00 0.00 4.17
261 262 4.456280 TCAAGTAGGCTAGTGTCATGTG 57.544 45.455 1.88 0.00 0.00 3.21
262 263 4.467795 ACATCAAGTAGGCTAGTGTCATGT 59.532 41.667 1.88 8.57 0.00 3.21
263 264 5.016051 ACATCAAGTAGGCTAGTGTCATG 57.984 43.478 1.88 7.99 0.00 3.07
264 265 4.202060 CGACATCAAGTAGGCTAGTGTCAT 60.202 45.833 14.37 1.84 33.71 3.06
265 266 3.128764 CGACATCAAGTAGGCTAGTGTCA 59.871 47.826 14.37 0.00 33.71 3.58
266 267 3.696898 CGACATCAAGTAGGCTAGTGTC 58.303 50.000 1.88 5.21 32.23 3.67
267 268 2.159226 GCGACATCAAGTAGGCTAGTGT 60.159 50.000 1.88 0.00 0.00 3.55
268 269 2.159240 TGCGACATCAAGTAGGCTAGTG 60.159 50.000 1.88 0.63 32.59 2.74
269 270 2.099921 CTGCGACATCAAGTAGGCTAGT 59.900 50.000 0.00 0.00 32.59 2.57
270 271 2.544694 CCTGCGACATCAAGTAGGCTAG 60.545 54.545 0.00 0.00 33.72 3.42
271 272 1.409064 CCTGCGACATCAAGTAGGCTA 59.591 52.381 0.00 0.00 33.72 3.93
272 273 0.176680 CCTGCGACATCAAGTAGGCT 59.823 55.000 0.00 0.00 33.72 4.58
273 274 0.108138 ACCTGCGACATCAAGTAGGC 60.108 55.000 0.00 0.00 42.84 3.93
274 275 2.271800 GAACCTGCGACATCAAGTAGG 58.728 52.381 0.00 0.00 44.31 3.18
275 276 2.959516 TGAACCTGCGACATCAAGTAG 58.040 47.619 0.00 0.00 0.00 2.57
276 277 3.394674 TTGAACCTGCGACATCAAGTA 57.605 42.857 0.00 0.00 0.00 2.24
277 278 2.254546 TTGAACCTGCGACATCAAGT 57.745 45.000 0.00 0.00 0.00 3.16
278 279 3.426695 GGATTTGAACCTGCGACATCAAG 60.427 47.826 0.00 0.00 33.71 3.02
279 280 2.487762 GGATTTGAACCTGCGACATCAA 59.512 45.455 0.00 0.00 0.00 2.57
280 281 2.083774 GGATTTGAACCTGCGACATCA 58.916 47.619 0.00 0.00 0.00 3.07
281 282 2.359900 AGGATTTGAACCTGCGACATC 58.640 47.619 0.00 0.00 36.30 3.06
282 283 2.496899 AGGATTTGAACCTGCGACAT 57.503 45.000 0.00 0.00 36.30 3.06
283 284 3.627395 ATAGGATTTGAACCTGCGACA 57.373 42.857 0.00 0.00 38.31 4.35
284 285 3.065371 CCAATAGGATTTGAACCTGCGAC 59.935 47.826 0.00 0.00 38.31 5.19
285 286 3.278574 CCAATAGGATTTGAACCTGCGA 58.721 45.455 0.00 0.00 38.31 5.10
286 287 2.358898 CCCAATAGGATTTGAACCTGCG 59.641 50.000 0.00 0.00 38.31 5.18
287 288 2.101415 GCCCAATAGGATTTGAACCTGC 59.899 50.000 0.00 0.00 38.31 4.85
288 289 2.695147 GGCCCAATAGGATTTGAACCTG 59.305 50.000 0.00 0.00 38.31 4.00
289 290 2.314549 TGGCCCAATAGGATTTGAACCT 59.685 45.455 0.00 0.00 41.05 3.50
290 291 2.745968 TGGCCCAATAGGATTTGAACC 58.254 47.619 0.00 0.00 38.24 3.62
291 292 6.670695 ATTATGGCCCAATAGGATTTGAAC 57.329 37.500 0.00 0.00 38.24 3.18
292 293 8.971032 AATATTATGGCCCAATAGGATTTGAA 57.029 30.769 0.00 0.00 38.24 2.69
293 294 8.971032 AAATATTATGGCCCAATAGGATTTGA 57.029 30.769 0.00 0.00 38.24 2.69
296 297 9.619842 AGAAAAATATTATGGCCCAATAGGATT 57.380 29.630 0.00 1.27 38.24 3.01
297 298 9.619842 AAGAAAAATATTATGGCCCAATAGGAT 57.380 29.630 0.00 0.00 38.24 3.24
298 299 9.445973 AAAGAAAAATATTATGGCCCAATAGGA 57.554 29.630 0.00 0.00 38.24 2.94
299 300 9.710900 GAAAGAAAAATATTATGGCCCAATAGG 57.289 33.333 0.00 0.00 39.47 2.57
303 304 9.972106 AATTGAAAGAAAAATATTATGGCCCAA 57.028 25.926 0.00 0.00 0.00 4.12
304 305 9.972106 AAATTGAAAGAAAAATATTATGGCCCA 57.028 25.926 0.00 0.00 0.00 5.36
319 320 9.965824 GTCAGTTCATAAGGAAAATTGAAAGAA 57.034 29.630 0.00 0.00 37.23 2.52
320 321 9.130661 TGTCAGTTCATAAGGAAAATTGAAAGA 57.869 29.630 0.00 0.00 37.23 2.52
321 322 9.748708 TTGTCAGTTCATAAGGAAAATTGAAAG 57.251 29.630 0.00 0.00 37.23 2.62
322 323 9.748708 CTTGTCAGTTCATAAGGAAAATTGAAA 57.251 29.630 0.00 0.00 37.23 2.69
323 324 7.867403 GCTTGTCAGTTCATAAGGAAAATTGAA 59.133 33.333 0.00 0.00 37.23 2.69
324 325 7.014134 TGCTTGTCAGTTCATAAGGAAAATTGA 59.986 33.333 0.00 0.00 37.23 2.57
325 326 7.147312 TGCTTGTCAGTTCATAAGGAAAATTG 58.853 34.615 0.00 0.00 37.23 2.32
326 327 7.288810 TGCTTGTCAGTTCATAAGGAAAATT 57.711 32.000 0.00 0.00 37.23 1.82
327 328 6.071728 CCTGCTTGTCAGTTCATAAGGAAAAT 60.072 38.462 0.00 0.00 41.25 1.82
328 329 5.241506 CCTGCTTGTCAGTTCATAAGGAAAA 59.758 40.000 0.00 0.00 41.25 2.29
329 330 4.761739 CCTGCTTGTCAGTTCATAAGGAAA 59.238 41.667 0.00 0.00 41.25 3.13
330 331 4.041567 TCCTGCTTGTCAGTTCATAAGGAA 59.958 41.667 0.00 0.00 41.25 3.36
331 332 3.582647 TCCTGCTTGTCAGTTCATAAGGA 59.417 43.478 0.00 0.00 41.25 3.36
332 333 3.686726 GTCCTGCTTGTCAGTTCATAAGG 59.313 47.826 0.00 0.00 41.25 2.69
333 334 3.686726 GGTCCTGCTTGTCAGTTCATAAG 59.313 47.826 0.00 0.00 41.25 1.73
334 335 3.559171 GGGTCCTGCTTGTCAGTTCATAA 60.559 47.826 0.00 0.00 41.25 1.90
335 336 2.027192 GGGTCCTGCTTGTCAGTTCATA 60.027 50.000 0.00 0.00 41.25 2.15
336 337 1.271597 GGGTCCTGCTTGTCAGTTCAT 60.272 52.381 0.00 0.00 41.25 2.57
337 338 0.108585 GGGTCCTGCTTGTCAGTTCA 59.891 55.000 0.00 0.00 41.25 3.18
338 339 0.108585 TGGGTCCTGCTTGTCAGTTC 59.891 55.000 0.00 0.00 41.25 3.01
339 340 0.179018 GTGGGTCCTGCTTGTCAGTT 60.179 55.000 0.00 0.00 41.25 3.16
340 341 1.056700 AGTGGGTCCTGCTTGTCAGT 61.057 55.000 0.00 0.00 41.25 3.41
341 342 0.976641 TAGTGGGTCCTGCTTGTCAG 59.023 55.000 0.00 0.00 42.49 3.51
342 343 0.976641 CTAGTGGGTCCTGCTTGTCA 59.023 55.000 0.00 0.00 0.00 3.58
343 344 0.977395 ACTAGTGGGTCCTGCTTGTC 59.023 55.000 0.00 0.00 0.00 3.18
344 345 0.977395 GACTAGTGGGTCCTGCTTGT 59.023 55.000 0.00 0.00 0.00 3.16
345 346 0.976641 TGACTAGTGGGTCCTGCTTG 59.023 55.000 0.00 0.00 35.54 4.01
346 347 1.958288 ATGACTAGTGGGTCCTGCTT 58.042 50.000 0.00 0.00 35.54 3.91
347 348 2.848678 TATGACTAGTGGGTCCTGCT 57.151 50.000 0.00 0.00 35.54 4.24
348 349 4.218852 GTCTATATGACTAGTGGGTCCTGC 59.781 50.000 0.00 0.00 42.21 4.85
349 350 5.386060 TGTCTATATGACTAGTGGGTCCTG 58.614 45.833 0.00 0.00 45.54 3.86
350 351 5.664815 TGTCTATATGACTAGTGGGTCCT 57.335 43.478 0.00 0.00 45.54 3.85
351 352 5.186021 CCATGTCTATATGACTAGTGGGTCC 59.814 48.000 0.00 0.00 45.54 4.46
352 353 5.775701 ACCATGTCTATATGACTAGTGGGTC 59.224 44.000 0.00 0.00 45.54 4.46
353 354 5.716979 ACCATGTCTATATGACTAGTGGGT 58.283 41.667 0.00 0.00 45.54 4.51
354 355 7.962995 ATACCATGTCTATATGACTAGTGGG 57.037 40.000 0.00 0.00 45.54 4.61
355 356 9.249053 AGAATACCATGTCTATATGACTAGTGG 57.751 37.037 0.00 14.98 45.54 4.00
393 394 3.219281 GGCCCACTTGTAGAGACAAAAA 58.781 45.455 0.00 0.00 44.90 1.94
394 395 2.488347 GGGCCCACTTGTAGAGACAAAA 60.488 50.000 19.95 0.00 44.90 2.44
395 396 1.073284 GGGCCCACTTGTAGAGACAAA 59.927 52.381 19.95 0.00 44.90 2.83
396 397 0.690762 GGGCCCACTTGTAGAGACAA 59.309 55.000 19.95 0.00 43.41 3.18
397 398 1.198759 GGGGCCCACTTGTAGAGACA 61.199 60.000 26.86 0.00 0.00 3.41
398 399 1.198759 TGGGGCCCACTTGTAGAGAC 61.199 60.000 24.76 0.98 0.00 3.36
399 400 0.253160 ATGGGGCCCACTTGTAGAGA 60.253 55.000 31.54 0.00 35.80 3.10
400 401 0.107017 CATGGGGCCCACTTGTAGAG 60.107 60.000 31.54 6.56 35.80 2.43
401 402 1.998530 CATGGGGCCCACTTGTAGA 59.001 57.895 31.54 1.22 35.80 2.59
402 403 1.754234 GCATGGGGCCCACTTGTAG 60.754 63.158 31.54 14.57 35.80 2.74
403 404 2.358619 GCATGGGGCCCACTTGTA 59.641 61.111 31.54 3.16 35.80 2.41
405 406 4.738998 TCGCATGGGGCCCACTTG 62.739 66.667 31.54 24.79 40.31 3.16
406 407 3.944250 CTTCGCATGGGGCCCACTT 62.944 63.158 31.54 11.00 40.31 3.16
407 408 4.431131 CTTCGCATGGGGCCCACT 62.431 66.667 31.54 14.86 40.31 4.00
408 409 4.740822 ACTTCGCATGGGGCCCAC 62.741 66.667 31.54 16.10 40.31 4.61
409 410 4.424711 GACTTCGCATGGGGCCCA 62.425 66.667 30.97 30.97 40.31 5.36
410 411 4.424711 TGACTTCGCATGGGGCCC 62.425 66.667 18.17 18.17 40.31 5.80
411 412 2.825836 CTGACTTCGCATGGGGCC 60.826 66.667 10.21 0.00 40.31 5.80
412 413 3.512516 GCTGACTTCGCATGGGGC 61.513 66.667 10.21 0.20 39.90 5.80
413 414 2.825836 GGCTGACTTCGCATGGGG 60.826 66.667 10.21 0.00 0.00 4.96
414 415 1.243342 TTTGGCTGACTTCGCATGGG 61.243 55.000 2.76 2.76 0.00 4.00
415 416 0.813184 ATTTGGCTGACTTCGCATGG 59.187 50.000 0.00 0.00 0.00 3.66
416 417 3.549423 CCATATTTGGCTGACTTCGCATG 60.549 47.826 0.00 0.00 35.85 4.06
417 418 2.620115 CCATATTTGGCTGACTTCGCAT 59.380 45.455 0.00 0.00 35.85 4.73
418 419 2.016318 CCATATTTGGCTGACTTCGCA 58.984 47.619 0.00 0.00 35.85 5.10
419 420 2.763249 CCATATTTGGCTGACTTCGC 57.237 50.000 0.00 0.00 35.85 4.70
430 431 0.376852 CGGACGTGGCACCATATTTG 59.623 55.000 12.86 0.00 0.00 2.32
431 432 1.373590 GCGGACGTGGCACCATATTT 61.374 55.000 12.86 0.00 0.00 1.40
432 433 1.817941 GCGGACGTGGCACCATATT 60.818 57.895 12.86 0.00 0.00 1.28
433 434 2.203015 GCGGACGTGGCACCATAT 60.203 61.111 12.86 0.00 0.00 1.78
434 435 3.696676 TGCGGACGTGGCACCATA 61.697 61.111 12.86 0.00 35.04 2.74
439 440 2.646117 TAAACTGTGCGGACGTGGCA 62.646 55.000 6.78 6.78 38.25 4.92
440 441 1.957186 TAAACTGTGCGGACGTGGC 60.957 57.895 1.60 0.00 0.00 5.01
441 442 1.857364 GTAAACTGTGCGGACGTGG 59.143 57.895 1.60 0.00 0.00 4.94
442 443 1.210545 ACGTAAACTGTGCGGACGTG 61.211 55.000 1.60 0.03 44.43 4.49
443 444 1.066257 ACGTAAACTGTGCGGACGT 59.934 52.632 1.60 0.30 41.59 4.34
444 445 0.662374 AGACGTAAACTGTGCGGACG 60.662 55.000 1.60 0.00 40.02 4.79
445 446 1.981533 GTAGACGTAAACTGTGCGGAC 59.018 52.381 0.00 0.00 40.02 4.79
446 447 1.608109 TGTAGACGTAAACTGTGCGGA 59.392 47.619 0.00 0.00 40.02 5.54
447 448 2.054687 TGTAGACGTAAACTGTGCGG 57.945 50.000 0.00 0.00 40.02 5.69
448 449 4.149221 TCATTTGTAGACGTAAACTGTGCG 59.851 41.667 0.00 0.00 41.69 5.34
449 450 5.404366 TCTCATTTGTAGACGTAAACTGTGC 59.596 40.000 0.00 0.00 0.00 4.57
450 451 7.582435 ATCTCATTTGTAGACGTAAACTGTG 57.418 36.000 0.00 0.00 0.00 3.66
451 452 9.355215 CTAATCTCATTTGTAGACGTAAACTGT 57.645 33.333 0.00 0.00 0.00 3.55
452 453 9.355215 ACTAATCTCATTTGTAGACGTAAACTG 57.645 33.333 0.00 0.00 0.00 3.16
455 456 9.793252 GGTACTAATCTCATTTGTAGACGTAAA 57.207 33.333 0.00 0.00 32.64 2.01
456 457 8.124823 CGGTACTAATCTCATTTGTAGACGTAA 58.875 37.037 0.00 0.00 32.64 3.18
457 458 7.280876 ACGGTACTAATCTCATTTGTAGACGTA 59.719 37.037 13.52 0.00 40.08 3.57
458 459 6.094603 ACGGTACTAATCTCATTTGTAGACGT 59.905 38.462 0.00 0.00 38.74 4.34
459 460 6.493116 ACGGTACTAATCTCATTTGTAGACG 58.507 40.000 0.00 10.44 37.67 4.18
460 461 9.962783 AATACGGTACTAATCTCATTTGTAGAC 57.037 33.333 0.00 0.00 32.64 2.59
463 464 9.037737 GCAAATACGGTACTAATCTCATTTGTA 57.962 33.333 0.00 0.00 35.55 2.41
464 465 7.551262 TGCAAATACGGTACTAATCTCATTTGT 59.449 33.333 0.00 0.00 35.55 2.83
465 466 7.915508 TGCAAATACGGTACTAATCTCATTTG 58.084 34.615 0.00 0.00 35.98 2.32
466 467 8.559536 CATGCAAATACGGTACTAATCTCATTT 58.440 33.333 0.00 0.00 0.00 2.32
467 468 7.715249 ACATGCAAATACGGTACTAATCTCATT 59.285 33.333 0.00 0.00 0.00 2.57
468 469 7.217200 ACATGCAAATACGGTACTAATCTCAT 58.783 34.615 0.00 0.00 0.00 2.90
469 470 6.578944 ACATGCAAATACGGTACTAATCTCA 58.421 36.000 0.00 0.00 0.00 3.27
470 471 7.223971 TGAACATGCAAATACGGTACTAATCTC 59.776 37.037 0.00 0.00 0.00 2.75
471 472 7.045416 TGAACATGCAAATACGGTACTAATCT 58.955 34.615 0.00 0.00 0.00 2.40
472 473 7.241663 TGAACATGCAAATACGGTACTAATC 57.758 36.000 0.00 0.00 0.00 1.75
473 474 7.639039 CATGAACATGCAAATACGGTACTAAT 58.361 34.615 0.00 0.00 31.39 1.73
474 475 7.010697 CATGAACATGCAAATACGGTACTAA 57.989 36.000 0.00 0.00 31.39 2.24
475 476 6.597262 CATGAACATGCAAATACGGTACTA 57.403 37.500 0.00 0.00 31.39 1.82
476 477 5.484173 CATGAACATGCAAATACGGTACT 57.516 39.130 0.00 0.00 31.39 2.73
486 487 8.208015 GTTCTCAAACTTAGCATGAACATGCAA 61.208 37.037 31.72 23.47 46.93 4.08
487 488 6.788021 GTTCTCAAACTTAGCATGAACATGCA 60.788 38.462 31.72 19.48 46.93 3.96
488 489 5.570589 GTTCTCAAACTTAGCATGAACATGC 59.429 40.000 26.01 26.01 46.05 4.06
489 490 6.088824 GGTTCTCAAACTTAGCATGAACATG 58.911 40.000 10.04 10.04 37.42 3.21
490 491 5.769662 TGGTTCTCAAACTTAGCATGAACAT 59.230 36.000 0.00 0.00 35.45 2.71
491 492 5.129634 TGGTTCTCAAACTTAGCATGAACA 58.870 37.500 0.00 0.00 35.45 3.18
492 493 5.335191 CCTGGTTCTCAAACTTAGCATGAAC 60.335 44.000 0.00 0.00 35.61 3.18
493 494 4.761739 CCTGGTTCTCAAACTTAGCATGAA 59.238 41.667 0.00 0.00 35.61 2.57
494 495 4.202461 ACCTGGTTCTCAAACTTAGCATGA 60.202 41.667 0.00 0.00 35.61 3.07
495 496 4.074970 ACCTGGTTCTCAAACTTAGCATG 58.925 43.478 0.00 0.00 35.61 4.06
496 497 4.373156 ACCTGGTTCTCAAACTTAGCAT 57.627 40.909 0.00 0.00 35.61 3.79
497 498 3.857157 ACCTGGTTCTCAAACTTAGCA 57.143 42.857 0.00 0.00 35.61 3.49
498 499 6.206829 ACATTAACCTGGTTCTCAAACTTAGC 59.793 38.462 16.75 0.00 35.61 3.09
499 500 7.745620 ACATTAACCTGGTTCTCAAACTTAG 57.254 36.000 16.75 0.00 35.61 2.18
500 501 9.802039 AATACATTAACCTGGTTCTCAAACTTA 57.198 29.630 16.75 0.75 35.61 2.24
501 502 8.706322 AATACATTAACCTGGTTCTCAAACTT 57.294 30.769 16.75 0.72 35.61 2.66
502 503 8.706322 AAATACATTAACCTGGTTCTCAAACT 57.294 30.769 16.75 0.00 35.61 2.66
503 504 9.758651 AAAAATACATTAACCTGGTTCTCAAAC 57.241 29.630 16.75 0.00 34.46 2.93
504 505 9.974980 GAAAAATACATTAACCTGGTTCTCAAA 57.025 29.630 16.75 5.09 0.00 2.69
505 506 9.137459 TGAAAAATACATTAACCTGGTTCTCAA 57.863 29.630 16.75 5.49 0.00 3.02
506 507 8.698973 TGAAAAATACATTAACCTGGTTCTCA 57.301 30.769 16.75 1.75 0.00 3.27
507 508 9.626045 CTTGAAAAATACATTAACCTGGTTCTC 57.374 33.333 16.75 0.00 0.00 2.87
508 509 9.143155 ACTTGAAAAATACATTAACCTGGTTCT 57.857 29.630 16.75 1.78 0.00 3.01
509 510 9.758651 AACTTGAAAAATACATTAACCTGGTTC 57.241 29.630 16.75 0.00 0.00 3.62
510 511 9.758651 GAACTTGAAAAATACATTAACCTGGTT 57.241 29.630 17.44 17.44 0.00 3.67
511 512 8.919145 TGAACTTGAAAAATACATTAACCTGGT 58.081 29.630 0.00 0.00 0.00 4.00
512 513 9.410556 CTGAACTTGAAAAATACATTAACCTGG 57.589 33.333 0.00 0.00 0.00 4.45
513 514 9.410556 CCTGAACTTGAAAAATACATTAACCTG 57.589 33.333 0.00 0.00 0.00 4.00
514 515 8.088365 GCCTGAACTTGAAAAATACATTAACCT 58.912 33.333 0.00 0.00 0.00 3.50
515 516 7.870445 TGCCTGAACTTGAAAAATACATTAACC 59.130 33.333 0.00 0.00 0.00 2.85
516 517 8.699749 GTGCCTGAACTTGAAAAATACATTAAC 58.300 33.333 0.00 0.00 0.00 2.01
517 518 8.637986 AGTGCCTGAACTTGAAAAATACATTAA 58.362 29.630 0.00 0.00 0.00 1.40
518 519 8.177119 AGTGCCTGAACTTGAAAAATACATTA 57.823 30.769 0.00 0.00 0.00 1.90
519 520 7.054491 AGTGCCTGAACTTGAAAAATACATT 57.946 32.000 0.00 0.00 0.00 2.71
520 521 6.655078 AGTGCCTGAACTTGAAAAATACAT 57.345 33.333 0.00 0.00 0.00 2.29
521 522 7.575414 TTAGTGCCTGAACTTGAAAAATACA 57.425 32.000 0.00 0.00 0.00 2.29
522 523 8.135529 ACTTTAGTGCCTGAACTTGAAAAATAC 58.864 33.333 0.00 0.00 0.00 1.89
523 524 8.134895 CACTTTAGTGCCTGAACTTGAAAAATA 58.865 33.333 0.00 0.00 39.39 1.40
524 525 6.980397 CACTTTAGTGCCTGAACTTGAAAAAT 59.020 34.615 0.00 0.00 39.39 1.82
525 526 6.151985 TCACTTTAGTGCCTGAACTTGAAAAA 59.848 34.615 5.00 0.00 45.25 1.94
526 527 5.650266 TCACTTTAGTGCCTGAACTTGAAAA 59.350 36.000 5.00 0.00 45.25 2.29
527 528 5.189928 TCACTTTAGTGCCTGAACTTGAAA 58.810 37.500 5.00 0.00 45.25 2.69
528 529 4.776349 TCACTTTAGTGCCTGAACTTGAA 58.224 39.130 5.00 0.00 45.25 2.69
529 530 4.415881 TCACTTTAGTGCCTGAACTTGA 57.584 40.909 5.00 0.00 45.25 3.02
530 531 4.335315 TGTTCACTTTAGTGCCTGAACTTG 59.665 41.667 5.00 0.00 45.25 3.16
531 532 4.523083 TGTTCACTTTAGTGCCTGAACTT 58.477 39.130 5.00 0.00 45.25 2.66
532 533 4.150897 TGTTCACTTTAGTGCCTGAACT 57.849 40.909 5.00 0.00 45.25 3.01
533 534 4.757149 AGATGTTCACTTTAGTGCCTGAAC 59.243 41.667 5.00 5.38 45.25 3.18
534 535 4.973168 AGATGTTCACTTTAGTGCCTGAA 58.027 39.130 5.00 0.00 45.25 3.02
535 536 4.623932 AGATGTTCACTTTAGTGCCTGA 57.376 40.909 5.00 0.00 45.25 3.86
536 537 5.295292 CCATAGATGTTCACTTTAGTGCCTG 59.705 44.000 5.00 0.00 45.25 4.85
537 538 5.431765 CCATAGATGTTCACTTTAGTGCCT 58.568 41.667 5.00 0.99 45.25 4.75
538 539 4.035675 GCCATAGATGTTCACTTTAGTGCC 59.964 45.833 5.00 0.00 45.25 5.01
539 540 4.635765 TGCCATAGATGTTCACTTTAGTGC 59.364 41.667 5.00 0.00 45.25 4.40
540 541 6.372659 ACTTGCCATAGATGTTCACTTTAGTG 59.627 38.462 3.47 3.47 46.91 2.74
541 542 6.476378 ACTTGCCATAGATGTTCACTTTAGT 58.524 36.000 0.00 0.00 0.00 2.24
542 543 6.992063 ACTTGCCATAGATGTTCACTTTAG 57.008 37.500 0.00 0.00 0.00 1.85
543 544 6.939730 TGAACTTGCCATAGATGTTCACTTTA 59.060 34.615 0.00 0.00 41.02 1.85
544 545 5.769662 TGAACTTGCCATAGATGTTCACTTT 59.230 36.000 0.00 0.00 41.02 2.66
545 546 5.316167 TGAACTTGCCATAGATGTTCACTT 58.684 37.500 0.00 0.00 41.02 3.16
546 547 4.910195 TGAACTTGCCATAGATGTTCACT 58.090 39.130 0.00 0.00 41.02 3.41
547 548 5.627499 TTGAACTTGCCATAGATGTTCAC 57.373 39.130 6.39 0.00 44.09 3.18
548 549 4.156556 GCTTGAACTTGCCATAGATGTTCA 59.843 41.667 0.00 0.00 43.17 3.18
549 550 4.156556 TGCTTGAACTTGCCATAGATGTTC 59.843 41.667 0.00 0.00 37.92 3.18
550 551 4.081406 TGCTTGAACTTGCCATAGATGTT 58.919 39.130 0.00 0.00 0.00 2.71
551 552 3.441572 GTGCTTGAACTTGCCATAGATGT 59.558 43.478 0.00 0.00 0.00 3.06
552 553 3.181493 GGTGCTTGAACTTGCCATAGATG 60.181 47.826 0.00 0.00 0.00 2.90
553 554 3.019564 GGTGCTTGAACTTGCCATAGAT 58.980 45.455 0.00 0.00 0.00 1.98
554 555 2.224744 TGGTGCTTGAACTTGCCATAGA 60.225 45.455 0.00 0.00 0.00 1.98
555 556 2.095059 GTGGTGCTTGAACTTGCCATAG 60.095 50.000 0.00 0.00 0.00 2.23
556 557 1.885887 GTGGTGCTTGAACTTGCCATA 59.114 47.619 0.00 0.00 0.00 2.74
557 558 0.675633 GTGGTGCTTGAACTTGCCAT 59.324 50.000 0.00 0.00 0.00 4.40
558 559 0.395586 AGTGGTGCTTGAACTTGCCA 60.396 50.000 0.00 0.00 0.00 4.92
559 560 1.537202 CTAGTGGTGCTTGAACTTGCC 59.463 52.381 0.00 0.00 0.00 4.52
560 561 2.031682 CACTAGTGGTGCTTGAACTTGC 60.032 50.000 15.49 0.00 39.22 4.01
561 562 3.885484 CACTAGTGGTGCTTGAACTTG 57.115 47.619 15.49 0.00 39.22 3.16
593 594 8.539770 TGTTTGCACTATGTTTCAAAGAAAAA 57.460 26.923 0.00 0.00 0.00 1.94
594 595 8.539770 TTGTTTGCACTATGTTTCAAAGAAAA 57.460 26.923 0.00 0.00 31.66 2.29
595 596 8.539770 TTTGTTTGCACTATGTTTCAAAGAAA 57.460 26.923 0.00 0.00 38.47 2.52
596 597 8.539770 TTTTGTTTGCACTATGTTTCAAAGAA 57.460 26.923 0.00 0.00 32.38 2.52
597 598 8.715191 ATTTTGTTTGCACTATGTTTCAAAGA 57.285 26.923 0.00 0.00 0.00 2.52
598 599 8.602328 TGATTTTGTTTGCACTATGTTTCAAAG 58.398 29.630 0.00 0.00 0.00 2.77
639 641 9.555727 GTGGACTATTTGCTTTGTAGGATTATA 57.444 33.333 0.00 0.00 0.00 0.98
640 642 7.226720 CGTGGACTATTTGCTTTGTAGGATTAT 59.773 37.037 0.00 0.00 0.00 1.28
679 681 5.441718 TGAGCTTTGGAGGATAGATTGTT 57.558 39.130 0.00 0.00 0.00 2.83
683 685 7.623999 TTCTTATGAGCTTTGGAGGATAGAT 57.376 36.000 0.00 0.00 0.00 1.98
697 699 8.853469 CTTGATTCAAAGGATTTCTTATGAGC 57.147 34.615 0.01 0.00 35.03 4.26
775 777 9.542462 CATCTATTTTGGAACGGAAAGAGTATA 57.458 33.333 0.00 0.00 30.87 1.47
776 778 8.265055 TCATCTATTTTGGAACGGAAAGAGTAT 58.735 33.333 0.00 0.00 30.87 2.12
777 779 7.548075 GTCATCTATTTTGGAACGGAAAGAGTA 59.452 37.037 0.00 0.00 30.87 2.59
778 780 6.371825 GTCATCTATTTTGGAACGGAAAGAGT 59.628 38.462 0.00 0.00 30.87 3.24
779 781 6.595716 AGTCATCTATTTTGGAACGGAAAGAG 59.404 38.462 0.00 0.00 30.33 2.85
780 782 6.472887 AGTCATCTATTTTGGAACGGAAAGA 58.527 36.000 0.00 0.00 0.00 2.52
781 783 6.371548 TGAGTCATCTATTTTGGAACGGAAAG 59.628 38.462 0.00 0.00 0.00 2.62
782 784 6.234920 TGAGTCATCTATTTTGGAACGGAAA 58.765 36.000 0.00 0.00 0.00 3.13
783 785 5.800296 TGAGTCATCTATTTTGGAACGGAA 58.200 37.500 0.00 0.00 0.00 4.30
784 786 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
785 787 5.163754 GGTTGAGTCATCTATTTTGGAACGG 60.164 44.000 0.00 0.00 0.00 4.44
786 788 5.643777 AGGTTGAGTCATCTATTTTGGAACG 59.356 40.000 0.00 0.00 0.00 3.95
787 789 7.454260 AAGGTTGAGTCATCTATTTTGGAAC 57.546 36.000 0.00 0.00 0.00 3.62
789 791 9.832445 GTATAAGGTTGAGTCATCTATTTTGGA 57.168 33.333 0.00 0.00 0.00 3.53
790 792 9.838339 AGTATAAGGTTGAGTCATCTATTTTGG 57.162 33.333 0.00 0.00 0.00 3.28
840 842 9.667107 TCCGTTCTAAAATAGATGACTCAATTT 57.333 29.630 0.00 0.00 34.22 1.82
841 843 9.319143 CTCCGTTCTAAAATAGATGACTCAATT 57.681 33.333 0.00 0.00 34.22 2.32
842 844 7.928706 CCTCCGTTCTAAAATAGATGACTCAAT 59.071 37.037 0.00 0.00 34.22 2.57
843 845 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
844 846 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
845 847 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
846 848 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
847 849 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
848 850 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
849 851 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
850 852 8.493787 AATACTCCCTCCGTTCTAAAATAGAT 57.506 34.615 0.00 0.00 34.22 1.98
851 853 7.909485 AATACTCCCTCCGTTCTAAAATAGA 57.091 36.000 0.00 0.00 0.00 1.98
858 860 9.205513 ACTTTATTTAATACTCCCTCCGTTCTA 57.794 33.333 0.00 0.00 0.00 2.10
859 861 8.087303 ACTTTATTTAATACTCCCTCCGTTCT 57.913 34.615 0.00 0.00 0.00 3.01
860 862 8.728337 AACTTTATTTAATACTCCCTCCGTTC 57.272 34.615 0.00 0.00 0.00 3.95
965 967 1.368268 TGGGATAGGGATTTGGGGCC 61.368 60.000 0.00 0.00 0.00 5.80
1184 1186 2.202946 GAGGCAGCGACCTAAGGC 60.203 66.667 0.01 0.00 41.32 4.35
1425 1427 1.668419 GCACCACAATAGCCTCGATT 58.332 50.000 0.00 0.00 0.00 3.34
1441 1443 1.139058 ACATCCTCCTACATTCGGCAC 59.861 52.381 0.00 0.00 0.00 5.01
1442 1444 1.138859 CACATCCTCCTACATTCGGCA 59.861 52.381 0.00 0.00 0.00 5.69
1443 1445 1.871080 CACATCCTCCTACATTCGGC 58.129 55.000 0.00 0.00 0.00 5.54
1444 1446 1.138859 TGCACATCCTCCTACATTCGG 59.861 52.381 0.00 0.00 0.00 4.30
1445 1447 2.477825 CTGCACATCCTCCTACATTCG 58.522 52.381 0.00 0.00 0.00 3.34
1446 1448 2.158842 AGCTGCACATCCTCCTACATTC 60.159 50.000 1.02 0.00 0.00 2.67
1447 1449 1.842562 AGCTGCACATCCTCCTACATT 59.157 47.619 1.02 0.00 0.00 2.71
1448 1450 1.415659 GAGCTGCACATCCTCCTACAT 59.584 52.381 1.02 0.00 0.00 2.29
1449 1451 0.826715 GAGCTGCACATCCTCCTACA 59.173 55.000 1.02 0.00 0.00 2.74
1450 1452 0.826715 TGAGCTGCACATCCTCCTAC 59.173 55.000 1.02 0.00 0.00 3.18
1451 1453 1.798626 ATGAGCTGCACATCCTCCTA 58.201 50.000 6.75 0.00 0.00 2.94
1452 1454 1.693062 CTATGAGCTGCACATCCTCCT 59.307 52.381 15.73 0.00 0.00 3.69
1453 1455 1.415659 ACTATGAGCTGCACATCCTCC 59.584 52.381 15.73 0.00 0.00 4.30
1454 1456 2.481854 CACTATGAGCTGCACATCCTC 58.518 52.381 15.73 0.00 0.00 3.71
1455 1457 1.140452 CCACTATGAGCTGCACATCCT 59.860 52.381 15.73 0.17 0.00 3.24
1456 1458 1.134280 ACCACTATGAGCTGCACATCC 60.134 52.381 15.73 0.00 0.00 3.51
1457 1459 2.322355 ACCACTATGAGCTGCACATC 57.678 50.000 15.73 0.00 0.00 3.06
1458 1460 2.751259 CAAACCACTATGAGCTGCACAT 59.249 45.455 16.44 16.44 0.00 3.21
1459 1461 2.153645 CAAACCACTATGAGCTGCACA 58.846 47.619 1.49 1.49 0.00 4.57
1636 1638 6.754209 TGAACGTGCAATTTGACTAAAACAAT 59.246 30.769 0.00 0.00 0.00 2.71
1647 1649 5.940603 TTACTGTTTGAACGTGCAATTTG 57.059 34.783 10.45 5.64 0.00 2.32
1648 1650 5.051106 GCATTACTGTTTGAACGTGCAATTT 60.051 36.000 10.45 0.00 0.00 1.82
1824 1872 4.443913 AAAATGGGTTAATGTGCGGTAC 57.556 40.909 0.00 0.00 0.00 3.34
1847 1895 9.423061 GGATTCCATAAATATTGCAACCATTAC 57.577 33.333 0.00 0.00 0.00 1.89
1848 1896 9.152327 TGGATTCCATAAATATTGCAACCATTA 57.848 29.630 0.00 1.53 0.00 1.90
1936 1984 5.359009 TGGTAACCATTAGTTCTCCTAGTCG 59.641 44.000 0.00 0.00 40.05 4.18
2367 2418 6.986817 CCTACAGACATAGTTGATAACTTGGG 59.013 42.308 0.00 0.00 42.81 4.12
2560 2611 2.938451 TGACAGTGTCAAAGACTTGCAG 59.062 45.455 23.55 0.00 39.78 4.41
2769 2820 7.177878 AGTTTCCAATGTTAATCAGTCCTCAT 58.822 34.615 0.00 0.00 0.00 2.90
2953 3005 7.177179 GATAAAAGTTTATCAAACGCGACAC 57.823 36.000 15.93 0.00 45.21 3.67
3148 3201 6.238731 CCTGTTTCTCTGTGAATTGTAAAGCA 60.239 38.462 0.00 0.00 34.24 3.91
3209 3262 9.574516 ACTTCAAAATTACCAAGTCTGAATAGT 57.425 29.630 0.00 0.00 0.00 2.12
3565 3658 1.166531 AACTGCAGCAGGACGTTTCC 61.167 55.000 26.38 0.00 43.22 3.13
3579 3672 5.235186 AGTCATCGCATATGAACTAAACTGC 59.765 40.000 6.97 0.00 0.00 4.40
3687 3782 3.392616 GGGTGGAGTAATGATCAGGTGAT 59.607 47.826 0.09 0.00 37.51 3.06
3734 3831 7.853437 CAGAACTTCAGTACACATCGTATAGAG 59.147 40.741 0.00 0.00 31.20 2.43
3735 3832 7.336176 ACAGAACTTCAGTACACATCGTATAGA 59.664 37.037 0.00 0.00 31.20 1.98
3850 3947 6.430000 TGAAGTGCCAGTAGATTAAGGTTTTC 59.570 38.462 0.00 0.00 0.00 2.29
4147 4244 1.001706 TCGTCTCCGACTTTGTCACAG 60.002 52.381 0.00 0.00 38.40 3.66
4171 4268 6.683110 GCGAGTTCCCTGAGAATAGTATTTCA 60.683 42.308 0.00 2.96 36.69 2.69
4235 4332 5.479724 TCATTGTTATGCCAAATGGAGTTCA 59.520 36.000 2.98 0.00 37.39 3.18
4236 4333 5.807011 GTCATTGTTATGCCAAATGGAGTTC 59.193 40.000 2.98 0.00 37.39 3.01
4237 4334 5.245751 TGTCATTGTTATGCCAAATGGAGTT 59.754 36.000 2.98 0.00 37.39 3.01
4238 4335 4.771577 TGTCATTGTTATGCCAAATGGAGT 59.228 37.500 2.98 0.00 37.39 3.85
4239 4336 5.327616 TGTCATTGTTATGCCAAATGGAG 57.672 39.130 2.98 0.00 37.39 3.86
4240 4337 5.936187 ATGTCATTGTTATGCCAAATGGA 57.064 34.783 2.98 0.00 37.39 3.41
4241 4338 6.256975 CAGAATGTCATTGTTATGCCAAATGG 59.743 38.462 1.88 0.00 38.53 3.16
4242 4339 6.237996 GCAGAATGTCATTGTTATGCCAAATG 60.238 38.462 1.88 0.00 36.76 2.32
4243 4340 5.813672 GCAGAATGTCATTGTTATGCCAAAT 59.186 36.000 1.88 0.00 36.76 2.32
4244 4341 5.047164 AGCAGAATGTCATTGTTATGCCAAA 60.047 36.000 1.88 0.00 41.96 3.28
4245 4342 4.463539 AGCAGAATGTCATTGTTATGCCAA 59.536 37.500 1.88 0.00 41.96 4.52
4246 4343 4.018490 AGCAGAATGTCATTGTTATGCCA 58.982 39.130 1.88 0.00 41.96 4.92
4247 4344 4.644103 AGCAGAATGTCATTGTTATGCC 57.356 40.909 1.88 0.00 41.96 4.40
4248 4345 5.404946 ACAAGCAGAATGTCATTGTTATGC 58.595 37.500 1.88 7.94 41.48 3.14
4249 4346 7.878477 AAACAAGCAGAATGTCATTGTTATG 57.122 32.000 1.88 0.85 43.37 1.90
4250 4347 7.095523 GCAAAACAAGCAGAATGTCATTGTTAT 60.096 33.333 1.88 0.00 43.37 1.89
4411 4524 6.331061 GCAAAATGAATGCAGATTTCTCTCT 58.669 36.000 0.00 0.00 43.29 3.10
4643 4759 6.113411 AGAACTGGAAATAATACGGACAAGG 58.887 40.000 0.00 0.00 0.00 3.61
4677 4793 8.821686 TCCATCAATCAAGGTAACATTGTATT 57.178 30.769 0.00 0.00 41.41 1.89
4678 4794 8.274322 TCTCCATCAATCAAGGTAACATTGTAT 58.726 33.333 0.00 0.00 41.41 2.29
4695 4811 4.935205 CCAACGTTATTCTGTCTCCATCAA 59.065 41.667 0.00 0.00 0.00 2.57
4800 4917 2.029560 TGTATGCTTTGCCATTGCGAAA 60.030 40.909 0.00 0.00 40.35 3.46
4801 4918 1.543358 TGTATGCTTTGCCATTGCGAA 59.457 42.857 0.00 0.00 41.78 4.70
4802 4919 1.172175 TGTATGCTTTGCCATTGCGA 58.828 45.000 0.00 0.00 41.78 5.10
4803 4920 2.121786 GATGTATGCTTTGCCATTGCG 58.878 47.619 0.00 0.00 41.78 4.85
4804 4921 2.159071 TGGATGTATGCTTTGCCATTGC 60.159 45.455 0.00 0.00 38.26 3.56
4805 4922 3.804786 TGGATGTATGCTTTGCCATTG 57.195 42.857 0.00 0.00 0.00 2.82
4823 4940 4.023193 ACTGTTTTGTTATCGGCTTCTTGG 60.023 41.667 0.00 0.00 0.00 3.61
4847 4964 2.664851 TGCCGTTTGGAGCTGTCG 60.665 61.111 0.00 0.00 37.49 4.35
4900 5017 5.391312 AGGTGAATGGTTATTGCAGTTTC 57.609 39.130 0.00 0.00 0.00 2.78
4931 5058 4.674101 CGTTGAAAGTTGTCCATGTTGTGT 60.674 41.667 0.00 0.00 0.00 3.72
4939 5066 3.876341 ACTTACCGTTGAAAGTTGTCCA 58.124 40.909 0.00 0.00 32.00 4.02
4980 5107 5.952064 GTCGATGTTTTGCGTACTAATTCAG 59.048 40.000 0.00 0.00 0.00 3.02
5046 5173 3.833442 TGCTGTTCTACTCATACACACG 58.167 45.455 0.00 0.00 0.00 4.49
5073 5200 9.209175 CTAAAATGCTGGATACTGTATACTTCC 57.791 37.037 11.17 5.10 39.82 3.46
5088 5215 4.702131 AGTTAGTCCTTGCTAAAATGCTGG 59.298 41.667 0.00 0.00 33.34 4.85
5255 5383 3.499918 CCCTCATTGGCGATGAAGTAATC 59.500 47.826 17.81 0.00 43.93 1.75
5269 5398 3.012518 CAACCTAGCAGTTCCCTCATTG 58.987 50.000 0.00 0.00 0.00 2.82
5321 5450 4.677182 AGGATGAGCTTAAAACCAATGGT 58.323 39.130 0.00 0.00 37.65 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.