Multiple sequence alignment - TraesCS3A01G263000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G263000 chr3A 100.000 2771 0 0 1 2771 486043605 486046375 0.000000e+00 5118
1 TraesCS3A01G263000 chr3A 94.064 438 23 3 1 436 7652660 7653096 0.000000e+00 662
2 TraesCS3A01G263000 chr3A 85.112 356 49 4 83 435 706780594 706780948 7.300000e-96 361
3 TraesCS3A01G263000 chr3A 83.412 211 33 2 227 435 706780086 706779876 7.830000e-46 195
4 TraesCS3A01G263000 chr3B 94.448 1801 49 12 460 2214 474996777 474998572 0.000000e+00 2724
5 TraesCS3A01G263000 chr3B 92.188 576 27 6 2214 2771 474998629 474999204 0.000000e+00 798
6 TraesCS3A01G263000 chr3B 85.112 356 49 4 83 435 22059441 22059087 7.300000e-96 361
7 TraesCS3A01G263000 chr3D 92.698 1753 54 13 508 2214 364733634 364735358 0.000000e+00 2460
8 TraesCS3A01G263000 chr3D 90.706 269 15 5 2214 2480 364735415 364735675 1.580000e-92 350
9 TraesCS3A01G263000 chr3D 89.818 275 13 6 2509 2771 364735675 364735946 3.420000e-89 339
10 TraesCS3A01G263000 chr3D 74.929 351 62 17 1842 2171 364735317 364735662 1.340000e-28 137
11 TraesCS3A01G263000 chr3D 90.196 102 7 3 448 549 364733543 364733641 2.240000e-26 130
12 TraesCS3A01G263000 chr5A 94.279 437 23 2 1 435 69548627 69549063 0.000000e+00 667
13 TraesCS3A01G263000 chr1A 93.593 437 26 2 1 435 541773855 541773419 0.000000e+00 651
14 TraesCS3A01G263000 chr1A 91.667 168 13 1 269 435 369275581 369275748 5.970000e-57 231
15 TraesCS3A01G263000 chr7A 93.103 435 28 2 1 433 271158510 271158944 1.080000e-178 636
16 TraesCS3A01G263000 chr2A 84.196 367 54 4 20 383 673325073 673324708 1.220000e-93 353


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G263000 chr3A 486043605 486046375 2770 False 5118.0 5118 100.0000 1 2771 1 chr3A.!!$F2 2770
1 TraesCS3A01G263000 chr3B 474996777 474999204 2427 False 1761.0 2724 93.3180 460 2771 2 chr3B.!!$F1 2311
2 TraesCS3A01G263000 chr3D 364733543 364735946 2403 False 683.2 2460 87.6694 448 2771 5 chr3D.!!$F1 2323

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.038166 ACGGCTCAATTGGACCACAT 59.962 50.0 15.25 0.0 0.0 3.21 F
446 447 0.041238 ATTCCCTCACTCTGGTCGGA 59.959 55.0 0.00 0.0 0.0 4.55 F
960 1029 0.253207 TTCTTTCCCTCCCTCCCTCC 60.253 60.0 0.00 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1680 1.267806 AGCGACTGCAATTCCAACAAG 59.732 47.619 0.00 0.0 46.23 3.16 R
1755 1836 2.095364 CAGCATTCACCTCTGCAAGAAC 60.095 50.000 0.00 0.0 46.34 3.01 R
2475 2620 2.129607 CACAACAAGCAAATGCAGACC 58.870 47.619 8.28 0.0 45.16 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.655651 AATGTGAAAAATTTGACGTTACCATT 57.344 26.923 1.82 0.00 0.00 3.16
26 27 8.655651 ATGTGAAAAATTTGACGTTACCATTT 57.344 26.923 0.00 0.00 0.00 2.32
27 28 9.751542 ATGTGAAAAATTTGACGTTACCATTTA 57.248 25.926 0.00 0.00 0.00 1.40
28 29 9.582431 TGTGAAAAATTTGACGTTACCATTTAA 57.418 25.926 0.00 0.00 0.00 1.52
30 31 9.250624 TGAAAAATTTGACGTTACCATTTAAGG 57.749 29.630 0.00 0.00 0.00 2.69
31 32 9.465985 GAAAAATTTGACGTTACCATTTAAGGA 57.534 29.630 0.00 0.00 0.00 3.36
32 33 9.819267 AAAAATTTGACGTTACCATTTAAGGAA 57.181 25.926 0.00 0.00 0.00 3.36
33 34 9.819267 AAAATTTGACGTTACCATTTAAGGAAA 57.181 25.926 0.00 0.00 0.00 3.13
34 35 9.471084 AAATTTGACGTTACCATTTAAGGAAAG 57.529 29.630 0.00 0.00 0.00 2.62
35 36 7.571080 TTTGACGTTACCATTTAAGGAAAGT 57.429 32.000 0.00 0.00 0.00 2.66
36 37 7.571080 TTGACGTTACCATTTAAGGAAAGTT 57.429 32.000 0.00 0.00 0.00 2.66
37 38 7.571080 TGACGTTACCATTTAAGGAAAGTTT 57.429 32.000 0.00 0.00 0.00 2.66
38 39 7.998580 TGACGTTACCATTTAAGGAAAGTTTT 58.001 30.769 0.00 0.00 0.00 2.43
39 40 9.118300 TGACGTTACCATTTAAGGAAAGTTTTA 57.882 29.630 0.00 0.00 0.00 1.52
40 41 9.385902 GACGTTACCATTTAAGGAAAGTTTTAC 57.614 33.333 0.00 0.00 0.00 2.01
41 42 8.352201 ACGTTACCATTTAAGGAAAGTTTTACC 58.648 33.333 0.00 0.00 0.00 2.85
42 43 8.351461 CGTTACCATTTAAGGAAAGTTTTACCA 58.649 33.333 0.00 0.00 0.00 3.25
43 44 9.467258 GTTACCATTTAAGGAAAGTTTTACCAC 57.533 33.333 0.00 0.00 0.00 4.16
44 45 7.663043 ACCATTTAAGGAAAGTTTTACCACA 57.337 32.000 0.00 0.00 0.00 4.17
45 46 8.257602 ACCATTTAAGGAAAGTTTTACCACAT 57.742 30.769 0.00 0.00 0.00 3.21
46 47 8.710239 ACCATTTAAGGAAAGTTTTACCACATT 58.290 29.630 0.00 0.00 0.00 2.71
47 48 9.554395 CCATTTAAGGAAAGTTTTACCACATTT 57.446 29.630 0.00 0.00 0.00 2.32
52 53 7.520451 AGGAAAGTTTTACCACATTTAGACC 57.480 36.000 0.00 0.00 0.00 3.85
53 54 7.064229 AGGAAAGTTTTACCACATTTAGACCA 58.936 34.615 0.00 0.00 0.00 4.02
54 55 7.562088 AGGAAAGTTTTACCACATTTAGACCAA 59.438 33.333 0.00 0.00 0.00 3.67
55 56 8.364894 GGAAAGTTTTACCACATTTAGACCAAT 58.635 33.333 0.00 0.00 0.00 3.16
56 57 9.191995 GAAAGTTTTACCACATTTAGACCAATG 57.808 33.333 0.00 0.00 39.67 2.82
57 58 7.227049 AGTTTTACCACATTTAGACCAATGG 57.773 36.000 0.00 0.00 38.32 3.16
58 59 6.780522 AGTTTTACCACATTTAGACCAATGGT 59.219 34.615 3.74 3.74 42.90 3.55
59 60 7.289084 AGTTTTACCACATTTAGACCAATGGTT 59.711 33.333 6.30 0.00 40.80 3.67
60 61 7.604657 TTTACCACATTTAGACCAATGGTTT 57.395 32.000 6.30 2.87 40.80 3.27
61 62 5.467035 ACCACATTTAGACCAATGGTTTG 57.533 39.130 6.30 2.79 37.12 2.93
62 63 4.244862 CCACATTTAGACCAATGGTTTGC 58.755 43.478 6.30 0.00 38.32 3.68
63 64 4.021192 CCACATTTAGACCAATGGTTTGCT 60.021 41.667 6.30 1.39 38.32 3.91
64 65 5.184864 CCACATTTAGACCAATGGTTTGCTA 59.815 40.000 6.30 0.28 38.32 3.49
65 66 6.324819 CACATTTAGACCAATGGTTTGCTAG 58.675 40.000 6.30 0.00 38.32 3.42
66 67 6.150976 CACATTTAGACCAATGGTTTGCTAGA 59.849 38.462 6.30 0.00 38.32 2.43
67 68 6.719370 ACATTTAGACCAATGGTTTGCTAGAA 59.281 34.615 6.30 2.38 38.32 2.10
68 69 7.397192 ACATTTAGACCAATGGTTTGCTAGAAT 59.603 33.333 6.30 4.37 38.32 2.40
69 70 8.902806 CATTTAGACCAATGGTTTGCTAGAATA 58.097 33.333 6.30 0.00 35.25 1.75
70 71 9.646522 ATTTAGACCAATGGTTTGCTAGAATAT 57.353 29.630 6.30 0.00 35.25 1.28
71 72 6.949352 AGACCAATGGTTTGCTAGAATATG 57.051 37.500 6.30 0.00 35.25 1.78
72 73 5.829924 AGACCAATGGTTTGCTAGAATATGG 59.170 40.000 6.30 0.00 35.25 2.74
73 74 5.765510 ACCAATGGTTTGCTAGAATATGGA 58.234 37.500 0.00 0.00 27.29 3.41
74 75 6.194235 ACCAATGGTTTGCTAGAATATGGAA 58.806 36.000 0.00 0.00 27.29 3.53
75 76 6.322201 ACCAATGGTTTGCTAGAATATGGAAG 59.678 38.462 0.00 0.00 27.29 3.46
76 77 6.322201 CCAATGGTTTGCTAGAATATGGAAGT 59.678 38.462 0.00 0.00 0.00 3.01
77 78 7.147846 CCAATGGTTTGCTAGAATATGGAAGTT 60.148 37.037 0.00 0.00 0.00 2.66
78 79 7.961326 ATGGTTTGCTAGAATATGGAAGTTT 57.039 32.000 0.00 0.00 0.00 2.66
79 80 7.775053 TGGTTTGCTAGAATATGGAAGTTTT 57.225 32.000 0.00 0.00 0.00 2.43
80 81 8.871629 TGGTTTGCTAGAATATGGAAGTTTTA 57.128 30.769 0.00 0.00 0.00 1.52
81 82 8.956426 TGGTTTGCTAGAATATGGAAGTTTTAG 58.044 33.333 0.00 0.00 0.00 1.85
82 83 8.957466 GGTTTGCTAGAATATGGAAGTTTTAGT 58.043 33.333 0.00 0.00 0.00 2.24
86 87 9.326413 TGCTAGAATATGGAAGTTTTAGTTAGC 57.674 33.333 0.00 0.00 0.00 3.09
87 88 8.775527 GCTAGAATATGGAAGTTTTAGTTAGCC 58.224 37.037 0.00 0.00 0.00 3.93
88 89 9.274206 CTAGAATATGGAAGTTTTAGTTAGCCC 57.726 37.037 0.00 0.00 0.00 5.19
89 90 7.639378 AGAATATGGAAGTTTTAGTTAGCCCA 58.361 34.615 0.00 0.00 0.00 5.36
90 91 8.282256 AGAATATGGAAGTTTTAGTTAGCCCAT 58.718 33.333 0.00 0.00 37.05 4.00
91 92 9.569122 GAATATGGAAGTTTTAGTTAGCCCATA 57.431 33.333 0.00 0.00 39.04 2.74
92 93 8.919777 ATATGGAAGTTTTAGTTAGCCCATAC 57.080 34.615 0.00 0.00 37.97 2.39
93 94 6.382919 TGGAAGTTTTAGTTAGCCCATACT 57.617 37.500 0.00 0.00 0.00 2.12
94 95 7.499200 TGGAAGTTTTAGTTAGCCCATACTA 57.501 36.000 0.00 0.00 0.00 1.82
95 96 8.097791 TGGAAGTTTTAGTTAGCCCATACTAT 57.902 34.615 0.00 0.00 0.00 2.12
96 97 8.554011 TGGAAGTTTTAGTTAGCCCATACTATT 58.446 33.333 0.00 0.00 0.00 1.73
97 98 9.404848 GGAAGTTTTAGTTAGCCCATACTATTT 57.595 33.333 0.00 0.00 0.00 1.40
186 187 8.192110 TCAATATTAATTTGGGAAAGTTACGGC 58.808 33.333 0.00 0.00 0.00 5.68
187 188 7.891498 ATATTAATTTGGGAAAGTTACGGCT 57.109 32.000 0.00 0.00 0.00 5.52
188 189 5.632244 TTAATTTGGGAAAGTTACGGCTC 57.368 39.130 0.00 0.00 0.00 4.70
189 190 2.642154 TTTGGGAAAGTTACGGCTCA 57.358 45.000 0.00 0.00 0.00 4.26
190 191 2.642154 TTGGGAAAGTTACGGCTCAA 57.358 45.000 0.00 0.00 0.00 3.02
191 192 2.871096 TGGGAAAGTTACGGCTCAAT 57.129 45.000 0.00 0.00 0.00 2.57
192 193 3.149005 TGGGAAAGTTACGGCTCAATT 57.851 42.857 0.00 0.00 0.00 2.32
193 194 2.817258 TGGGAAAGTTACGGCTCAATTG 59.183 45.455 0.00 0.00 0.00 2.32
194 195 2.163613 GGGAAAGTTACGGCTCAATTGG 59.836 50.000 5.42 0.00 0.00 3.16
195 196 3.078837 GGAAAGTTACGGCTCAATTGGA 58.921 45.455 5.42 0.00 0.00 3.53
196 197 3.119955 GGAAAGTTACGGCTCAATTGGAC 60.120 47.826 5.42 0.00 0.00 4.02
197 198 2.109425 AGTTACGGCTCAATTGGACC 57.891 50.000 5.42 6.60 0.00 4.46
198 199 1.349688 AGTTACGGCTCAATTGGACCA 59.650 47.619 15.25 0.00 0.00 4.02
199 200 1.467342 GTTACGGCTCAATTGGACCAC 59.533 52.381 15.25 5.18 0.00 4.16
200 201 0.687920 TACGGCTCAATTGGACCACA 59.312 50.000 15.25 2.59 0.00 4.17
201 202 0.038166 ACGGCTCAATTGGACCACAT 59.962 50.000 15.25 0.00 0.00 3.21
202 203 0.452987 CGGCTCAATTGGACCACATG 59.547 55.000 15.25 0.00 0.00 3.21
203 204 1.549203 GGCTCAATTGGACCACATGT 58.451 50.000 5.42 0.00 0.00 3.21
204 205 1.895131 GGCTCAATTGGACCACATGTT 59.105 47.619 5.42 0.00 0.00 2.71
205 206 2.299867 GGCTCAATTGGACCACATGTTT 59.700 45.455 5.42 0.00 0.00 2.83
206 207 3.319755 GCTCAATTGGACCACATGTTTG 58.680 45.455 5.42 0.00 0.00 2.93
207 208 3.861886 GCTCAATTGGACCACATGTTTGG 60.862 47.826 5.42 0.00 43.04 3.28
208 209 2.632028 TCAATTGGACCACATGTTTGGG 59.368 45.455 5.42 3.41 41.49 4.12
209 210 2.632028 CAATTGGACCACATGTTTGGGA 59.368 45.455 7.66 0.00 41.49 4.37
210 211 2.461300 TTGGACCACATGTTTGGGAA 57.539 45.000 7.66 0.00 41.49 3.97
211 212 1.993956 TGGACCACATGTTTGGGAAG 58.006 50.000 7.66 0.00 41.49 3.46
212 213 1.496857 TGGACCACATGTTTGGGAAGA 59.503 47.619 7.66 0.00 41.49 2.87
213 214 2.109834 TGGACCACATGTTTGGGAAGAT 59.890 45.455 7.66 0.00 41.49 2.40
214 215 3.332187 TGGACCACATGTTTGGGAAGATA 59.668 43.478 7.66 0.00 41.49 1.98
215 216 4.202620 TGGACCACATGTTTGGGAAGATAA 60.203 41.667 7.66 0.00 41.49 1.75
216 217 4.956075 GGACCACATGTTTGGGAAGATAAT 59.044 41.667 7.66 0.00 41.49 1.28
217 218 5.163519 GGACCACATGTTTGGGAAGATAATG 60.164 44.000 7.66 0.00 41.49 1.90
218 219 5.579047 ACCACATGTTTGGGAAGATAATGA 58.421 37.500 7.66 0.00 41.49 2.57
219 220 5.418840 ACCACATGTTTGGGAAGATAATGAC 59.581 40.000 7.66 0.00 41.49 3.06
220 221 5.418524 CCACATGTTTGGGAAGATAATGACA 59.581 40.000 0.00 0.00 32.35 3.58
221 222 6.405065 CCACATGTTTGGGAAGATAATGACAG 60.405 42.308 0.00 0.00 32.35 3.51
222 223 6.151648 CACATGTTTGGGAAGATAATGACAGT 59.848 38.462 0.00 0.00 0.00 3.55
223 224 6.375455 ACATGTTTGGGAAGATAATGACAGTC 59.625 38.462 0.00 0.00 0.00 3.51
224 225 6.126863 TGTTTGGGAAGATAATGACAGTCT 57.873 37.500 1.31 0.00 0.00 3.24
225 226 7.252612 TGTTTGGGAAGATAATGACAGTCTA 57.747 36.000 1.31 0.00 0.00 2.59
226 227 7.685481 TGTTTGGGAAGATAATGACAGTCTAA 58.315 34.615 1.31 0.00 0.00 2.10
227 228 8.328758 TGTTTGGGAAGATAATGACAGTCTAAT 58.671 33.333 1.31 0.00 0.00 1.73
228 229 9.832445 GTTTGGGAAGATAATGACAGTCTAATA 57.168 33.333 1.31 0.00 0.00 0.98
231 232 9.159254 TGGGAAGATAATGACAGTCTAATATGT 57.841 33.333 1.31 0.00 0.00 2.29
235 236 8.839310 AGATAATGACAGTCTAATATGTTGGC 57.161 34.615 1.31 0.00 0.00 4.52
236 237 8.654997 AGATAATGACAGTCTAATATGTTGGCT 58.345 33.333 1.31 0.00 0.00 4.75
237 238 9.277783 GATAATGACAGTCTAATATGTTGGCTT 57.722 33.333 1.31 0.00 0.00 4.35
238 239 7.944729 AATGACAGTCTAATATGTTGGCTTT 57.055 32.000 1.31 0.00 0.00 3.51
239 240 7.944729 ATGACAGTCTAATATGTTGGCTTTT 57.055 32.000 1.31 0.00 0.00 2.27
240 241 7.144722 TGACAGTCTAATATGTTGGCTTTTG 57.855 36.000 1.31 0.00 0.00 2.44
241 242 6.714810 TGACAGTCTAATATGTTGGCTTTTGT 59.285 34.615 1.31 0.00 0.00 2.83
242 243 6.913170 ACAGTCTAATATGTTGGCTTTTGTG 58.087 36.000 0.00 0.00 0.00 3.33
243 244 6.071952 ACAGTCTAATATGTTGGCTTTTGTGG 60.072 38.462 0.00 0.00 0.00 4.17
244 245 5.102313 GTCTAATATGTTGGCTTTTGTGGC 58.898 41.667 0.00 0.00 0.00 5.01
245 246 5.016173 TCTAATATGTTGGCTTTTGTGGCT 58.984 37.500 0.00 0.00 0.00 4.75
246 247 4.622260 AATATGTTGGCTTTTGTGGCTT 57.378 36.364 0.00 0.00 0.00 4.35
247 248 4.622260 ATATGTTGGCTTTTGTGGCTTT 57.378 36.364 0.00 0.00 0.00 3.51
248 249 2.777832 TGTTGGCTTTTGTGGCTTTT 57.222 40.000 0.00 0.00 0.00 2.27
249 250 3.064900 TGTTGGCTTTTGTGGCTTTTT 57.935 38.095 0.00 0.00 0.00 1.94
268 269 4.333913 TTTTTATTGCCACATGTGCACT 57.666 36.364 20.81 16.75 38.72 4.40
269 270 4.333913 TTTTATTGCCACATGTGCACTT 57.666 36.364 20.81 9.21 38.72 3.16
270 271 5.459536 TTTTATTGCCACATGTGCACTTA 57.540 34.783 20.81 12.33 38.72 2.24
271 272 4.433186 TTATTGCCACATGTGCACTTAC 57.567 40.909 20.81 5.45 38.72 2.34
272 273 1.685148 TTGCCACATGTGCACTTACA 58.315 45.000 20.81 7.88 38.72 2.41
273 274 1.685148 TGCCACATGTGCACTTACAA 58.315 45.000 20.81 0.00 33.69 2.41
274 275 1.608109 TGCCACATGTGCACTTACAAG 59.392 47.619 20.81 4.52 33.69 3.16
275 276 1.666888 GCCACATGTGCACTTACAAGC 60.667 52.381 20.81 10.92 33.69 4.01
276 277 1.400113 CCACATGTGCACTTACAAGCG 60.400 52.381 20.81 1.22 33.69 4.68
277 278 1.264020 CACATGTGCACTTACAAGCGT 59.736 47.619 19.41 1.88 33.69 5.07
278 279 2.478514 CACATGTGCACTTACAAGCGTA 59.521 45.455 19.41 0.00 33.69 4.42
279 280 2.478894 ACATGTGCACTTACAAGCGTAC 59.521 45.455 19.41 0.00 33.69 3.67
280 281 1.504359 TGTGCACTTACAAGCGTACC 58.496 50.000 19.41 0.00 0.00 3.34
281 282 1.069513 TGTGCACTTACAAGCGTACCT 59.930 47.619 19.41 0.00 0.00 3.08
282 283 2.296752 TGTGCACTTACAAGCGTACCTA 59.703 45.455 19.41 0.00 0.00 3.08
283 284 3.056393 TGTGCACTTACAAGCGTACCTAT 60.056 43.478 19.41 0.00 0.00 2.57
284 285 3.550678 GTGCACTTACAAGCGTACCTATC 59.449 47.826 10.32 0.00 0.00 2.08
285 286 3.446161 TGCACTTACAAGCGTACCTATCT 59.554 43.478 0.00 0.00 0.00 1.98
286 287 3.797256 GCACTTACAAGCGTACCTATCTG 59.203 47.826 0.00 0.00 0.00 2.90
287 288 4.677250 GCACTTACAAGCGTACCTATCTGT 60.677 45.833 0.00 0.00 0.00 3.41
288 289 5.035443 CACTTACAAGCGTACCTATCTGTC 58.965 45.833 0.00 0.00 0.00 3.51
289 290 4.948621 ACTTACAAGCGTACCTATCTGTCT 59.051 41.667 0.00 0.00 0.00 3.41
290 291 3.784701 ACAAGCGTACCTATCTGTCTG 57.215 47.619 0.00 0.00 0.00 3.51
291 292 2.427453 ACAAGCGTACCTATCTGTCTGG 59.573 50.000 0.00 0.00 0.00 3.86
292 293 2.688446 CAAGCGTACCTATCTGTCTGGA 59.312 50.000 0.00 0.00 0.00 3.86
293 294 3.014304 AGCGTACCTATCTGTCTGGAA 57.986 47.619 0.00 0.00 0.00 3.53
294 295 3.567397 AGCGTACCTATCTGTCTGGAAT 58.433 45.455 0.00 0.00 0.00 3.01
295 296 3.961408 AGCGTACCTATCTGTCTGGAATT 59.039 43.478 0.00 0.00 0.00 2.17
296 297 5.138276 AGCGTACCTATCTGTCTGGAATTA 58.862 41.667 0.00 0.00 0.00 1.40
297 298 5.775701 AGCGTACCTATCTGTCTGGAATTAT 59.224 40.000 0.00 0.00 0.00 1.28
298 299 6.946583 AGCGTACCTATCTGTCTGGAATTATA 59.053 38.462 0.00 0.00 0.00 0.98
299 300 7.616150 AGCGTACCTATCTGTCTGGAATTATAT 59.384 37.037 0.00 0.00 0.00 0.86
300 301 8.900781 GCGTACCTATCTGTCTGGAATTATATA 58.099 37.037 0.00 0.00 0.00 0.86
366 367 3.906998 CCAATATGTGGTGTTTTTCGCA 58.093 40.909 0.00 0.00 43.20 5.10
367 368 4.302455 CCAATATGTGGTGTTTTTCGCAA 58.698 39.130 0.00 0.00 43.20 4.85
368 369 4.149747 CCAATATGTGGTGTTTTTCGCAAC 59.850 41.667 0.00 0.00 43.20 4.17
369 370 2.949451 ATGTGGTGTTTTTCGCAACA 57.051 40.000 0.00 0.00 43.48 3.33
370 371 2.724977 TGTGGTGTTTTTCGCAACAA 57.275 40.000 0.00 0.00 37.52 2.83
371 372 3.026630 TGTGGTGTTTTTCGCAACAAA 57.973 38.095 0.00 0.00 37.52 2.83
372 373 2.731976 TGTGGTGTTTTTCGCAACAAAC 59.268 40.909 0.00 0.00 37.52 2.93
373 374 2.092995 GTGGTGTTTTTCGCAACAAACC 59.907 45.455 0.00 0.00 38.40 3.27
374 375 2.028930 TGGTGTTTTTCGCAACAAACCT 60.029 40.909 0.00 0.00 38.40 3.50
375 376 2.347150 GGTGTTTTTCGCAACAAACCTG 59.653 45.455 0.00 0.00 38.40 4.00
376 377 2.990514 GTGTTTTTCGCAACAAACCTGT 59.009 40.909 0.00 0.00 38.40 4.00
377 378 4.167268 GTGTTTTTCGCAACAAACCTGTA 58.833 39.130 0.00 0.00 38.40 2.74
378 379 4.801516 GTGTTTTTCGCAACAAACCTGTAT 59.198 37.500 0.00 0.00 38.40 2.29
379 380 5.972382 GTGTTTTTCGCAACAAACCTGTATA 59.028 36.000 0.00 0.00 38.40 1.47
380 381 6.141685 GTGTTTTTCGCAACAAACCTGTATAG 59.858 38.462 0.00 0.00 38.40 1.31
381 382 6.183360 TGTTTTTCGCAACAAACCTGTATAGT 60.183 34.615 0.00 0.00 33.60 2.12
382 383 7.012138 TGTTTTTCGCAACAAACCTGTATAGTA 59.988 33.333 0.00 0.00 33.60 1.82
383 384 6.715344 TTTCGCAACAAACCTGTATAGTAG 57.285 37.500 0.00 0.00 33.45 2.57
384 385 4.751060 TCGCAACAAACCTGTATAGTAGG 58.249 43.478 2.15 2.15 41.22 3.18
394 395 5.243207 ACCTGTATAGTAGGTGTTTTGTGC 58.757 41.667 7.63 0.00 46.48 4.57
395 396 5.221762 ACCTGTATAGTAGGTGTTTTGTGCA 60.222 40.000 7.63 0.00 46.48 4.57
396 397 5.703592 CCTGTATAGTAGGTGTTTTGTGCAA 59.296 40.000 0.00 0.00 0.00 4.08
397 398 6.348213 CCTGTATAGTAGGTGTTTTGTGCAAC 60.348 42.308 0.00 0.00 37.35 4.17
414 415 6.851609 TGTGCAACATTAGCCTTAATAAGTG 58.148 36.000 0.00 0.00 45.67 3.16
415 416 6.657117 TGTGCAACATTAGCCTTAATAAGTGA 59.343 34.615 0.00 0.00 45.67 3.41
416 417 7.339212 TGTGCAACATTAGCCTTAATAAGTGAT 59.661 33.333 0.00 0.00 45.67 3.06
417 418 7.645340 GTGCAACATTAGCCTTAATAAGTGATG 59.355 37.037 0.00 0.00 36.32 3.07
418 419 7.141363 GCAACATTAGCCTTAATAAGTGATGG 58.859 38.462 0.00 0.00 0.00 3.51
419 420 7.201821 GCAACATTAGCCTTAATAAGTGATGGT 60.202 37.037 0.00 0.00 0.00 3.55
420 421 8.686334 CAACATTAGCCTTAATAAGTGATGGTT 58.314 33.333 0.00 0.00 0.00 3.67
421 422 8.823220 ACATTAGCCTTAATAAGTGATGGTTT 57.177 30.769 0.00 0.00 0.00 3.27
422 423 8.686334 ACATTAGCCTTAATAAGTGATGGTTTG 58.314 33.333 0.00 0.00 0.00 2.93
423 424 8.686334 CATTAGCCTTAATAAGTGATGGTTTGT 58.314 33.333 0.00 0.00 0.00 2.83
424 425 6.515272 AGCCTTAATAAGTGATGGTTTGTG 57.485 37.500 0.00 0.00 0.00 3.33
425 426 6.010219 AGCCTTAATAAGTGATGGTTTGTGT 58.990 36.000 0.00 0.00 0.00 3.72
426 427 7.172342 AGCCTTAATAAGTGATGGTTTGTGTA 58.828 34.615 0.00 0.00 0.00 2.90
427 428 7.668052 AGCCTTAATAAGTGATGGTTTGTGTAA 59.332 33.333 0.00 0.00 0.00 2.41
428 429 8.466798 GCCTTAATAAGTGATGGTTTGTGTAAT 58.533 33.333 0.00 0.00 0.00 1.89
432 433 5.722021 AAGTGATGGTTTGTGTAATTCCC 57.278 39.130 0.00 0.00 0.00 3.97
433 434 4.998051 AGTGATGGTTTGTGTAATTCCCT 58.002 39.130 0.00 0.00 0.00 4.20
434 435 5.010282 AGTGATGGTTTGTGTAATTCCCTC 58.990 41.667 0.00 0.00 0.00 4.30
435 436 4.764823 GTGATGGTTTGTGTAATTCCCTCA 59.235 41.667 0.00 0.00 0.00 3.86
436 437 4.764823 TGATGGTTTGTGTAATTCCCTCAC 59.235 41.667 0.00 0.00 0.00 3.51
437 438 4.447138 TGGTTTGTGTAATTCCCTCACT 57.553 40.909 0.00 0.00 33.82 3.41
438 439 4.394729 TGGTTTGTGTAATTCCCTCACTC 58.605 43.478 0.00 0.00 33.82 3.51
439 440 4.104102 TGGTTTGTGTAATTCCCTCACTCT 59.896 41.667 0.00 0.00 33.82 3.24
440 441 4.455877 GGTTTGTGTAATTCCCTCACTCTG 59.544 45.833 0.00 0.00 33.82 3.35
441 442 3.981071 TGTGTAATTCCCTCACTCTGG 57.019 47.619 0.00 0.00 33.82 3.86
442 443 3.248024 TGTGTAATTCCCTCACTCTGGT 58.752 45.455 0.00 0.00 33.82 4.00
443 444 3.260884 TGTGTAATTCCCTCACTCTGGTC 59.739 47.826 0.00 0.00 33.82 4.02
444 445 2.496070 TGTAATTCCCTCACTCTGGTCG 59.504 50.000 0.00 0.00 0.00 4.79
445 446 0.905357 AATTCCCTCACTCTGGTCGG 59.095 55.000 0.00 0.00 0.00 4.79
446 447 0.041238 ATTCCCTCACTCTGGTCGGA 59.959 55.000 0.00 0.00 0.00 4.55
488 489 6.276091 TCCTAATCATCGTCTCATGTCTTTG 58.724 40.000 0.00 0.00 0.00 2.77
769 829 4.033776 CCAAAGGCGAGGGAGGCA 62.034 66.667 0.00 0.00 39.37 4.75
779 839 4.436998 GGGAGGCACAGACGTCCG 62.437 72.222 13.01 4.15 43.97 4.79
826 886 0.673644 CGCAGACGAAATCCCAAGGT 60.674 55.000 0.00 0.00 43.93 3.50
851 911 5.712446 AGCAGGGGTAGAAAAGAAGAAATTC 59.288 40.000 0.00 0.00 0.00 2.17
858 918 7.361031 GGGTAGAAAAGAAGAAATTCTCGGAAC 60.361 40.741 0.00 0.00 35.22 3.62
957 1026 1.282653 CCCTTCTTTCCCTCCCTCCC 61.283 65.000 0.00 0.00 0.00 4.30
958 1027 0.253394 CCTTCTTTCCCTCCCTCCCT 60.253 60.000 0.00 0.00 0.00 4.20
959 1028 1.208706 CTTCTTTCCCTCCCTCCCTC 58.791 60.000 0.00 0.00 0.00 4.30
960 1029 0.253207 TTCTTTCCCTCCCTCCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
1232 1301 2.058595 CGTCCCCGGACAAGGAGAT 61.059 63.158 14.11 0.00 44.77 2.75
1587 1662 5.118510 GGTGTTTGAATTTGGCGTCTTATTG 59.881 40.000 0.00 0.00 0.00 1.90
1699 1778 4.533311 AGGTAAGGAACAAGGGATCGTTTA 59.467 41.667 0.00 0.00 0.00 2.01
1701 1782 5.884232 GGTAAGGAACAAGGGATCGTTTAAT 59.116 40.000 0.00 0.00 0.00 1.40
1704 1785 6.267496 AGGAACAAGGGATCGTTTAATTTG 57.733 37.500 0.00 0.00 0.00 2.32
1709 1790 6.811954 ACAAGGGATCGTTTAATTTGTTGTT 58.188 32.000 0.00 0.00 0.00 2.83
1712 1793 4.089351 GGGATCGTTTAATTTGTTGTTGCG 59.911 41.667 0.00 0.00 0.00 4.85
1717 1798 5.971792 TCGTTTAATTTGTTGTTGCGATTCA 59.028 32.000 0.00 0.00 0.00 2.57
1720 1801 6.984740 TTAATTTGTTGTTGCGATTCAGTC 57.015 33.333 0.00 0.00 0.00 3.51
1755 1836 1.703438 GCTCTGAAGATGCGCCTGTG 61.703 60.000 4.18 0.00 0.00 3.66
1874 1955 9.129209 GTTTCTTTCTTATGTGAATGGCTAAAC 57.871 33.333 0.00 0.00 0.00 2.01
2017 2098 4.941713 TGGTTATTGGGCTTGTAGGATTT 58.058 39.130 0.00 0.00 0.00 2.17
2027 2108 6.826741 TGGGCTTGTAGGATTTCTAATTGTAC 59.173 38.462 0.00 0.00 0.00 2.90
2055 2136 5.131475 GGTTATGATCCTTAGTGGGGTGTAA 59.869 44.000 0.00 0.00 36.20 2.41
2096 2179 6.672266 TGGGTAATGATCTATGAAGGTCTC 57.328 41.667 0.00 0.00 33.64 3.36
2135 2218 5.043248 AGGAAACAGTTCAATTTTGCTTCG 58.957 37.500 0.00 0.00 35.25 3.79
2144 2227 3.002862 TCAATTTTGCTTCGTTGTAGCGT 59.997 39.130 0.00 0.00 41.54 5.07
2192 2275 6.869913 TGCATTGATCACATTTCTTTTCTTCC 59.130 34.615 0.00 0.00 0.00 3.46
2223 2363 8.018677 TCGTAAAAATGTCATTCTCTTCTGTC 57.981 34.615 0.00 0.00 0.00 3.51
2373 2518 4.584638 TGTCCTGTTATTTACATGGGCT 57.415 40.909 0.00 0.00 35.85 5.19
2392 2537 3.119602 GGCTTTAATCCGTGAAGGTTTCC 60.120 47.826 0.00 0.00 41.99 3.13
2404 2549 8.487848 TCCGTGAAGGTTTCCTATATGAAATTA 58.512 33.333 6.48 0.00 41.99 1.40
2451 2596 2.949451 ATTGTAGCTCTGAGGTGTCG 57.051 50.000 18.98 0.00 0.00 4.35
2473 2618 1.341531 AGTACTCTTGTGCAAGTCGCT 59.658 47.619 11.17 4.30 43.06 4.93
2475 2620 2.071688 ACTCTTGTGCAAGTCGCTAG 57.928 50.000 11.17 4.42 43.06 3.42
2527 2677 5.065988 ACGAATCGGCTTAGCAAACATAAAT 59.934 36.000 7.80 0.00 0.00 1.40
2528 2678 5.971202 CGAATCGGCTTAGCAAACATAAATT 59.029 36.000 6.53 0.00 0.00 1.82
2594 2744 7.124298 TGCTTTGACTGTACTCTGATAGGTTAT 59.876 37.037 0.00 0.00 0.00 1.89
2695 2847 1.359459 GGCCGTCTCCTAGTTTTGCG 61.359 60.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.655651 AATGGTAACGTCAAATTTTTCACATT 57.344 26.923 0.00 0.00 42.51 2.71
1 2 8.655651 AAATGGTAACGTCAAATTTTTCACAT 57.344 26.923 0.00 0.00 42.51 3.21
4 5 9.250624 CCTTAAATGGTAACGTCAAATTTTTCA 57.749 29.630 0.00 0.00 42.51 2.69
5 6 9.465985 TCCTTAAATGGTAACGTCAAATTTTTC 57.534 29.630 0.00 0.00 42.51 2.29
6 7 9.819267 TTCCTTAAATGGTAACGTCAAATTTTT 57.181 25.926 0.00 0.00 42.51 1.94
7 8 9.819267 TTTCCTTAAATGGTAACGTCAAATTTT 57.181 25.926 0.00 0.00 42.51 1.82
8 9 9.471084 CTTTCCTTAAATGGTAACGTCAAATTT 57.529 29.630 0.00 0.00 42.51 1.82
9 10 8.635328 ACTTTCCTTAAATGGTAACGTCAAATT 58.365 29.630 0.00 0.00 42.51 1.82
10 11 8.173542 ACTTTCCTTAAATGGTAACGTCAAAT 57.826 30.769 0.00 0.00 42.51 2.32
11 12 7.571080 ACTTTCCTTAAATGGTAACGTCAAA 57.429 32.000 0.00 0.00 42.51 2.69
12 13 7.571080 AACTTTCCTTAAATGGTAACGTCAA 57.429 32.000 0.00 0.00 42.51 3.18
13 14 7.571080 AAACTTTCCTTAAATGGTAACGTCA 57.429 32.000 0.00 0.00 42.51 4.35
14 15 9.385902 GTAAAACTTTCCTTAAATGGTAACGTC 57.614 33.333 0.00 0.00 42.51 4.34
15 16 8.352201 GGTAAAACTTTCCTTAAATGGTAACGT 58.648 33.333 0.00 0.00 42.51 3.99
16 17 8.351461 TGGTAAAACTTTCCTTAAATGGTAACG 58.649 33.333 0.00 0.00 42.51 3.18
17 18 9.467258 GTGGTAAAACTTTCCTTAAATGGTAAC 57.533 33.333 0.00 0.00 0.00 2.50
18 19 9.198475 TGTGGTAAAACTTTCCTTAAATGGTAA 57.802 29.630 0.00 0.00 0.00 2.85
19 20 8.763984 TGTGGTAAAACTTTCCTTAAATGGTA 57.236 30.769 0.00 0.00 0.00 3.25
20 21 7.663043 TGTGGTAAAACTTTCCTTAAATGGT 57.337 32.000 0.00 0.00 0.00 3.55
21 22 9.554395 AAATGTGGTAAAACTTTCCTTAAATGG 57.446 29.630 0.00 0.00 0.00 3.16
26 27 9.070179 GGTCTAAATGTGGTAAAACTTTCCTTA 57.930 33.333 0.00 0.00 0.00 2.69
27 28 7.562088 TGGTCTAAATGTGGTAAAACTTTCCTT 59.438 33.333 0.00 0.00 0.00 3.36
28 29 7.064229 TGGTCTAAATGTGGTAAAACTTTCCT 58.936 34.615 0.00 0.00 0.00 3.36
29 30 7.279750 TGGTCTAAATGTGGTAAAACTTTCC 57.720 36.000 0.00 0.00 0.00 3.13
30 31 9.191995 CATTGGTCTAAATGTGGTAAAACTTTC 57.808 33.333 0.00 0.00 33.65 2.62
31 32 8.147704 CCATTGGTCTAAATGTGGTAAAACTTT 58.852 33.333 0.00 0.00 36.06 2.66
32 33 7.289084 ACCATTGGTCTAAATGTGGTAAAACTT 59.711 33.333 1.37 0.00 38.13 2.66
33 34 6.780522 ACCATTGGTCTAAATGTGGTAAAACT 59.219 34.615 1.37 0.00 38.13 2.66
34 35 6.988522 ACCATTGGTCTAAATGTGGTAAAAC 58.011 36.000 1.37 0.00 38.13 2.43
35 36 7.604657 AACCATTGGTCTAAATGTGGTAAAA 57.395 32.000 9.22 0.00 38.91 1.52
36 37 7.437748 CAAACCATTGGTCTAAATGTGGTAAA 58.562 34.615 9.22 0.00 38.91 2.01
37 38 6.517529 GCAAACCATTGGTCTAAATGTGGTAA 60.518 38.462 9.22 0.00 38.91 2.85
38 39 5.047660 GCAAACCATTGGTCTAAATGTGGTA 60.048 40.000 9.22 0.00 38.91 3.25
39 40 4.262420 GCAAACCATTGGTCTAAATGTGGT 60.262 41.667 9.22 0.00 41.42 4.16
40 41 4.021192 AGCAAACCATTGGTCTAAATGTGG 60.021 41.667 9.22 0.00 43.50 4.17
41 42 5.138125 AGCAAACCATTGGTCTAAATGTG 57.862 39.130 9.22 0.90 43.50 3.21
42 43 6.245408 TCTAGCAAACCATTGGTCTAAATGT 58.755 36.000 9.22 0.00 43.50 2.71
43 44 6.757897 TCTAGCAAACCATTGGTCTAAATG 57.242 37.500 9.22 5.18 43.50 2.32
44 45 7.961326 ATTCTAGCAAACCATTGGTCTAAAT 57.039 32.000 9.22 6.69 43.50 1.40
45 46 8.902806 CATATTCTAGCAAACCATTGGTCTAAA 58.097 33.333 9.22 4.95 43.50 1.85
46 47 7.502226 CCATATTCTAGCAAACCATTGGTCTAA 59.498 37.037 9.22 0.00 43.50 2.10
47 48 6.998074 CCATATTCTAGCAAACCATTGGTCTA 59.002 38.462 9.22 5.74 43.50 2.59
48 49 5.829924 CCATATTCTAGCAAACCATTGGTCT 59.170 40.000 9.22 4.79 43.50 3.85
49 50 5.827797 TCCATATTCTAGCAAACCATTGGTC 59.172 40.000 9.22 0.00 43.50 4.02
51 52 6.322201 ACTTCCATATTCTAGCAAACCATTGG 59.678 38.462 0.00 0.00 37.02 3.16
52 53 7.338800 ACTTCCATATTCTAGCAAACCATTG 57.661 36.000 0.00 0.00 39.65 2.82
53 54 7.961326 AACTTCCATATTCTAGCAAACCATT 57.039 32.000 0.00 0.00 0.00 3.16
54 55 7.961326 AAACTTCCATATTCTAGCAAACCAT 57.039 32.000 0.00 0.00 0.00 3.55
55 56 7.775053 AAAACTTCCATATTCTAGCAAACCA 57.225 32.000 0.00 0.00 0.00 3.67
56 57 8.957466 ACTAAAACTTCCATATTCTAGCAAACC 58.043 33.333 0.00 0.00 0.00 3.27
60 61 9.326413 GCTAACTAAAACTTCCATATTCTAGCA 57.674 33.333 0.00 0.00 0.00 3.49
61 62 8.775527 GGCTAACTAAAACTTCCATATTCTAGC 58.224 37.037 0.00 0.00 0.00 3.42
62 63 9.274206 GGGCTAACTAAAACTTCCATATTCTAG 57.726 37.037 0.00 0.00 0.00 2.43
63 64 8.774183 TGGGCTAACTAAAACTTCCATATTCTA 58.226 33.333 0.00 0.00 0.00 2.10
64 65 7.639378 TGGGCTAACTAAAACTTCCATATTCT 58.361 34.615 0.00 0.00 0.00 2.40
65 66 7.875327 TGGGCTAACTAAAACTTCCATATTC 57.125 36.000 0.00 0.00 0.00 1.75
66 67 9.350951 GTATGGGCTAACTAAAACTTCCATATT 57.649 33.333 0.00 0.00 38.01 1.28
67 68 8.724310 AGTATGGGCTAACTAAAACTTCCATAT 58.276 33.333 0.00 0.00 38.01 1.78
68 69 8.097791 AGTATGGGCTAACTAAAACTTCCATA 57.902 34.615 0.00 0.00 35.62 2.74
69 70 6.970191 AGTATGGGCTAACTAAAACTTCCAT 58.030 36.000 0.00 0.00 37.50 3.41
70 71 6.382919 AGTATGGGCTAACTAAAACTTCCA 57.617 37.500 0.00 0.00 0.00 3.53
71 72 8.975663 AATAGTATGGGCTAACTAAAACTTCC 57.024 34.615 0.00 0.00 32.24 3.46
160 161 8.192110 GCCGTAACTTTCCCAAATTAATATTGA 58.808 33.333 0.00 0.00 0.00 2.57
161 162 8.194769 AGCCGTAACTTTCCCAAATTAATATTG 58.805 33.333 0.00 0.00 0.00 1.90
162 163 8.301252 AGCCGTAACTTTCCCAAATTAATATT 57.699 30.769 0.00 0.00 0.00 1.28
163 164 7.558444 TGAGCCGTAACTTTCCCAAATTAATAT 59.442 33.333 0.00 0.00 0.00 1.28
164 165 6.885376 TGAGCCGTAACTTTCCCAAATTAATA 59.115 34.615 0.00 0.00 0.00 0.98
165 166 5.712917 TGAGCCGTAACTTTCCCAAATTAAT 59.287 36.000 0.00 0.00 0.00 1.40
166 167 5.071370 TGAGCCGTAACTTTCCCAAATTAA 58.929 37.500 0.00 0.00 0.00 1.40
167 168 4.653868 TGAGCCGTAACTTTCCCAAATTA 58.346 39.130 0.00 0.00 0.00 1.40
168 169 3.492337 TGAGCCGTAACTTTCCCAAATT 58.508 40.909 0.00 0.00 0.00 1.82
169 170 3.149005 TGAGCCGTAACTTTCCCAAAT 57.851 42.857 0.00 0.00 0.00 2.32
170 171 2.642154 TGAGCCGTAACTTTCCCAAA 57.358 45.000 0.00 0.00 0.00 3.28
171 172 2.642154 TTGAGCCGTAACTTTCCCAA 57.358 45.000 0.00 0.00 0.00 4.12
172 173 2.817258 CAATTGAGCCGTAACTTTCCCA 59.183 45.455 0.00 0.00 0.00 4.37
173 174 2.163613 CCAATTGAGCCGTAACTTTCCC 59.836 50.000 7.12 0.00 0.00 3.97
174 175 3.078837 TCCAATTGAGCCGTAACTTTCC 58.921 45.455 7.12 0.00 0.00 3.13
175 176 3.119955 GGTCCAATTGAGCCGTAACTTTC 60.120 47.826 7.12 0.00 35.38 2.62
176 177 2.817844 GGTCCAATTGAGCCGTAACTTT 59.182 45.455 7.12 0.00 35.38 2.66
177 178 2.224670 TGGTCCAATTGAGCCGTAACTT 60.225 45.455 7.12 0.00 40.88 2.66
178 179 1.349688 TGGTCCAATTGAGCCGTAACT 59.650 47.619 7.12 0.00 40.88 2.24
179 180 1.467342 GTGGTCCAATTGAGCCGTAAC 59.533 52.381 7.12 0.00 40.88 2.50
180 181 1.072489 TGTGGTCCAATTGAGCCGTAA 59.928 47.619 7.12 0.00 40.88 3.18
181 182 0.687920 TGTGGTCCAATTGAGCCGTA 59.312 50.000 7.12 0.00 40.88 4.02
182 183 0.038166 ATGTGGTCCAATTGAGCCGT 59.962 50.000 7.12 0.00 40.88 5.68
183 184 0.452987 CATGTGGTCCAATTGAGCCG 59.547 55.000 7.12 0.00 40.88 5.52
184 185 1.549203 ACATGTGGTCCAATTGAGCC 58.451 50.000 7.12 9.03 40.88 4.70
185 186 3.319755 CAAACATGTGGTCCAATTGAGC 58.680 45.455 7.12 3.72 41.96 4.26
186 187 3.306225 CCCAAACATGTGGTCCAATTGAG 60.306 47.826 7.12 0.00 36.90 3.02
187 188 2.632028 CCCAAACATGTGGTCCAATTGA 59.368 45.455 7.12 0.00 36.90 2.57
188 189 2.632028 TCCCAAACATGTGGTCCAATTG 59.368 45.455 0.00 0.00 36.90 2.32
189 190 2.969628 TCCCAAACATGTGGTCCAATT 58.030 42.857 0.00 0.00 36.90 2.32
190 191 2.692709 TCCCAAACATGTGGTCCAAT 57.307 45.000 0.00 0.00 36.90 3.16
191 192 2.091610 TCTTCCCAAACATGTGGTCCAA 60.092 45.455 0.00 0.00 36.90 3.53
192 193 1.496857 TCTTCCCAAACATGTGGTCCA 59.503 47.619 0.00 0.00 36.90 4.02
193 194 2.286365 TCTTCCCAAACATGTGGTCC 57.714 50.000 0.00 0.00 36.90 4.46
194 195 5.652014 TCATTATCTTCCCAAACATGTGGTC 59.348 40.000 0.00 0.00 36.90 4.02
195 196 5.418840 GTCATTATCTTCCCAAACATGTGGT 59.581 40.000 0.00 0.00 36.90 4.16
196 197 5.418524 TGTCATTATCTTCCCAAACATGTGG 59.581 40.000 0.00 0.00 38.51 4.17
197 198 6.151648 ACTGTCATTATCTTCCCAAACATGTG 59.848 38.462 0.00 0.00 0.00 3.21
198 199 6.248433 ACTGTCATTATCTTCCCAAACATGT 58.752 36.000 0.00 0.00 0.00 3.21
199 200 6.600822 AGACTGTCATTATCTTCCCAAACATG 59.399 38.462 10.88 0.00 0.00 3.21
200 201 6.725364 AGACTGTCATTATCTTCCCAAACAT 58.275 36.000 10.88 0.00 0.00 2.71
201 202 6.126863 AGACTGTCATTATCTTCCCAAACA 57.873 37.500 10.88 0.00 0.00 2.83
202 203 8.738645 ATTAGACTGTCATTATCTTCCCAAAC 57.261 34.615 10.88 0.00 0.00 2.93
205 206 9.159254 ACATATTAGACTGTCATTATCTTCCCA 57.841 33.333 10.88 0.00 0.00 4.37
209 210 9.277783 GCCAACATATTAGACTGTCATTATCTT 57.722 33.333 10.88 0.00 0.00 2.40
210 211 8.654997 AGCCAACATATTAGACTGTCATTATCT 58.345 33.333 10.88 0.00 0.00 1.98
211 212 8.839310 AGCCAACATATTAGACTGTCATTATC 57.161 34.615 10.88 0.00 0.00 1.75
212 213 9.632638 AAAGCCAACATATTAGACTGTCATTAT 57.367 29.630 10.88 2.95 0.00 1.28
213 214 9.461312 AAAAGCCAACATATTAGACTGTCATTA 57.539 29.630 10.88 0.00 0.00 1.90
214 215 7.944729 AAAGCCAACATATTAGACTGTCATT 57.055 32.000 10.88 0.00 0.00 2.57
215 216 7.394359 ACAAAAGCCAACATATTAGACTGTCAT 59.606 33.333 10.88 0.00 0.00 3.06
216 217 6.714810 ACAAAAGCCAACATATTAGACTGTCA 59.285 34.615 10.88 0.00 0.00 3.58
217 218 7.023575 CACAAAAGCCAACATATTAGACTGTC 58.976 38.462 0.00 0.00 0.00 3.51
218 219 6.071952 CCACAAAAGCCAACATATTAGACTGT 60.072 38.462 0.00 0.00 0.00 3.55
219 220 6.324819 CCACAAAAGCCAACATATTAGACTG 58.675 40.000 0.00 0.00 0.00 3.51
220 221 5.105756 GCCACAAAAGCCAACATATTAGACT 60.106 40.000 0.00 0.00 0.00 3.24
221 222 5.102313 GCCACAAAAGCCAACATATTAGAC 58.898 41.667 0.00 0.00 0.00 2.59
222 223 5.016173 AGCCACAAAAGCCAACATATTAGA 58.984 37.500 0.00 0.00 0.00 2.10
223 224 5.329035 AGCCACAAAAGCCAACATATTAG 57.671 39.130 0.00 0.00 0.00 1.73
224 225 5.736951 AAGCCACAAAAGCCAACATATTA 57.263 34.783 0.00 0.00 0.00 0.98
225 226 4.622260 AAGCCACAAAAGCCAACATATT 57.378 36.364 0.00 0.00 0.00 1.28
226 227 4.622260 AAAGCCACAAAAGCCAACATAT 57.378 36.364 0.00 0.00 0.00 1.78
227 228 4.414337 AAAAGCCACAAAAGCCAACATA 57.586 36.364 0.00 0.00 0.00 2.29
228 229 3.280197 AAAAGCCACAAAAGCCAACAT 57.720 38.095 0.00 0.00 0.00 2.71
229 230 2.777832 AAAAGCCACAAAAGCCAACA 57.222 40.000 0.00 0.00 0.00 3.33
247 248 4.333913 AGTGCACATGTGGCAATAAAAA 57.666 36.364 26.55 0.00 43.91 1.94
248 249 4.333913 AAGTGCACATGTGGCAATAAAA 57.666 36.364 26.55 0.52 43.91 1.52
249 250 4.279420 TGTAAGTGCACATGTGGCAATAAA 59.721 37.500 26.55 13.12 43.91 1.40
250 251 3.823304 TGTAAGTGCACATGTGGCAATAA 59.177 39.130 26.55 10.87 43.91 1.40
251 252 3.416156 TGTAAGTGCACATGTGGCAATA 58.584 40.909 26.55 16.57 43.91 1.90
252 253 2.237643 TGTAAGTGCACATGTGGCAAT 58.762 42.857 26.55 19.81 43.91 3.56
253 254 1.685148 TGTAAGTGCACATGTGGCAA 58.315 45.000 26.55 8.21 43.91 4.52
254 255 1.608109 CTTGTAAGTGCACATGTGGCA 59.392 47.619 26.55 20.67 39.32 4.92
255 256 1.666888 GCTTGTAAGTGCACATGTGGC 60.667 52.381 26.55 18.47 0.00 5.01
256 257 1.400113 CGCTTGTAAGTGCACATGTGG 60.400 52.381 26.55 9.24 33.04 4.17
257 258 1.264020 ACGCTTGTAAGTGCACATGTG 59.736 47.619 21.83 21.83 40.10 3.21
258 259 1.593196 ACGCTTGTAAGTGCACATGT 58.407 45.000 21.04 6.27 40.10 3.21
259 260 2.159707 GGTACGCTTGTAAGTGCACATG 60.160 50.000 21.04 1.50 40.10 3.21
260 261 2.073816 GGTACGCTTGTAAGTGCACAT 58.926 47.619 21.04 10.23 40.10 3.21
261 262 1.069513 AGGTACGCTTGTAAGTGCACA 59.930 47.619 21.04 0.00 40.10 4.57
262 263 1.792006 AGGTACGCTTGTAAGTGCAC 58.208 50.000 9.40 9.40 40.10 4.57
263 264 3.446161 AGATAGGTACGCTTGTAAGTGCA 59.554 43.478 5.16 0.00 40.10 4.57
264 265 3.797256 CAGATAGGTACGCTTGTAAGTGC 59.203 47.826 5.16 0.00 40.10 4.40
265 266 4.995124 ACAGATAGGTACGCTTGTAAGTG 58.005 43.478 3.77 3.77 42.11 3.16
266 267 4.948621 AGACAGATAGGTACGCTTGTAAGT 59.051 41.667 0.00 0.00 0.00 2.24
267 268 5.274718 CAGACAGATAGGTACGCTTGTAAG 58.725 45.833 0.00 0.00 0.00 2.34
268 269 4.097437 CCAGACAGATAGGTACGCTTGTAA 59.903 45.833 0.00 0.00 0.00 2.41
269 270 3.630769 CCAGACAGATAGGTACGCTTGTA 59.369 47.826 0.00 0.00 0.00 2.41
270 271 2.427453 CCAGACAGATAGGTACGCTTGT 59.573 50.000 0.00 0.00 0.00 3.16
271 272 2.688446 TCCAGACAGATAGGTACGCTTG 59.312 50.000 0.00 0.00 0.00 4.01
272 273 3.014304 TCCAGACAGATAGGTACGCTT 57.986 47.619 0.00 0.00 0.00 4.68
273 274 2.730934 TCCAGACAGATAGGTACGCT 57.269 50.000 0.00 0.00 0.00 5.07
274 275 4.323553 AATTCCAGACAGATAGGTACGC 57.676 45.455 0.00 0.00 0.00 4.42
346 347 4.742167 TGTTGCGAAAAACACCACATATTG 59.258 37.500 0.00 0.00 35.16 1.90
347 348 4.938080 TGTTGCGAAAAACACCACATATT 58.062 34.783 0.00 0.00 35.16 1.28
348 349 4.576216 TGTTGCGAAAAACACCACATAT 57.424 36.364 0.00 0.00 35.16 1.78
349 350 4.371855 TTGTTGCGAAAAACACCACATA 57.628 36.364 0.00 0.00 39.70 2.29
350 351 2.949451 TGTTGCGAAAAACACCACAT 57.051 40.000 0.00 0.00 35.16 3.21
351 352 2.724977 TTGTTGCGAAAAACACCACA 57.275 40.000 0.00 0.00 39.70 4.17
352 353 2.092995 GGTTTGTTGCGAAAAACACCAC 59.907 45.455 19.38 5.21 39.70 4.16
353 354 2.028930 AGGTTTGTTGCGAAAAACACCA 60.029 40.909 19.38 0.00 39.70 4.17
354 355 2.347150 CAGGTTTGTTGCGAAAAACACC 59.653 45.455 19.38 5.92 39.70 4.16
355 356 2.990514 ACAGGTTTGTTGCGAAAAACAC 59.009 40.909 19.38 10.11 39.70 3.32
356 357 3.305398 ACAGGTTTGTTGCGAAAAACA 57.695 38.095 19.38 2.76 37.89 2.83
357 358 6.203647 ACTATACAGGTTTGTTGCGAAAAAC 58.796 36.000 10.89 10.89 38.76 2.43
358 359 6.380095 ACTATACAGGTTTGTTGCGAAAAA 57.620 33.333 0.00 0.00 38.76 1.94
359 360 6.148150 CCTACTATACAGGTTTGTTGCGAAAA 59.852 38.462 0.00 0.00 38.76 2.29
360 361 5.640357 CCTACTATACAGGTTTGTTGCGAAA 59.360 40.000 0.00 0.00 38.76 3.46
361 362 5.172934 CCTACTATACAGGTTTGTTGCGAA 58.827 41.667 0.00 0.00 38.76 4.70
362 363 4.221262 ACCTACTATACAGGTTTGTTGCGA 59.779 41.667 0.00 0.00 44.18 5.10
363 364 4.328983 CACCTACTATACAGGTTTGTTGCG 59.671 45.833 0.00 0.00 44.18 4.85
364 365 5.243207 ACACCTACTATACAGGTTTGTTGC 58.757 41.667 0.00 0.00 44.18 4.17
365 366 7.739498 AAACACCTACTATACAGGTTTGTTG 57.261 36.000 0.00 0.00 44.18 3.33
366 367 7.776500 ACAAAACACCTACTATACAGGTTTGTT 59.224 33.333 0.00 5.69 44.18 2.83
367 368 7.227910 CACAAAACACCTACTATACAGGTTTGT 59.772 37.037 0.00 0.00 44.18 2.83
368 369 7.581476 CACAAAACACCTACTATACAGGTTTG 58.419 38.462 0.00 0.00 44.18 2.93
369 370 6.206048 GCACAAAACACCTACTATACAGGTTT 59.794 38.462 0.00 0.00 44.18 3.27
370 371 5.704053 GCACAAAACACCTACTATACAGGTT 59.296 40.000 0.00 0.00 44.18 3.50
372 373 5.242434 TGCACAAAACACCTACTATACAGG 58.758 41.667 0.00 0.00 39.25 4.00
373 374 6.203915 TGTTGCACAAAACACCTACTATACAG 59.796 38.462 0.00 0.00 35.16 2.74
374 375 6.056236 TGTTGCACAAAACACCTACTATACA 58.944 36.000 0.00 0.00 35.16 2.29
375 376 6.548441 TGTTGCACAAAACACCTACTATAC 57.452 37.500 0.00 0.00 35.16 1.47
376 377 7.753309 AATGTTGCACAAAACACCTACTATA 57.247 32.000 0.00 0.00 42.56 1.31
377 378 6.648879 AATGTTGCACAAAACACCTACTAT 57.351 33.333 0.00 0.00 42.56 2.12
378 379 6.293735 GCTAATGTTGCACAAAACACCTACTA 60.294 38.462 0.00 0.00 42.56 1.82
379 380 5.507315 GCTAATGTTGCACAAAACACCTACT 60.507 40.000 0.00 0.00 42.56 2.57
380 381 4.679654 GCTAATGTTGCACAAAACACCTAC 59.320 41.667 0.00 0.00 42.56 3.18
381 382 4.261825 GGCTAATGTTGCACAAAACACCTA 60.262 41.667 0.00 0.00 42.56 3.08
382 383 3.492482 GGCTAATGTTGCACAAAACACCT 60.492 43.478 0.00 0.00 42.56 4.00
383 384 2.799978 GGCTAATGTTGCACAAAACACC 59.200 45.455 0.00 0.00 42.56 4.16
384 385 3.716601 AGGCTAATGTTGCACAAAACAC 58.283 40.909 0.00 0.00 42.56 3.32
385 386 4.399004 AAGGCTAATGTTGCACAAAACA 57.601 36.364 0.00 0.00 43.82 2.83
386 387 8.527567 TTATTAAGGCTAATGTTGCACAAAAC 57.472 30.769 0.00 0.00 0.00 2.43
387 388 8.364142 ACTTATTAAGGCTAATGTTGCACAAAA 58.636 29.630 8.26 0.00 0.00 2.44
388 389 7.812191 CACTTATTAAGGCTAATGTTGCACAAA 59.188 33.333 8.26 0.00 0.00 2.83
389 390 7.175816 TCACTTATTAAGGCTAATGTTGCACAA 59.824 33.333 8.26 0.00 0.00 3.33
390 391 6.657117 TCACTTATTAAGGCTAATGTTGCACA 59.343 34.615 8.26 0.00 0.00 4.57
391 392 7.083875 TCACTTATTAAGGCTAATGTTGCAC 57.916 36.000 8.26 0.00 0.00 4.57
392 393 7.201812 CCATCACTTATTAAGGCTAATGTTGCA 60.202 37.037 8.26 0.00 0.00 4.08
393 394 7.141363 CCATCACTTATTAAGGCTAATGTTGC 58.859 38.462 8.26 0.00 0.00 4.17
394 395 8.225603 ACCATCACTTATTAAGGCTAATGTTG 57.774 34.615 8.26 2.88 0.00 3.33
395 396 8.823220 AACCATCACTTATTAAGGCTAATGTT 57.177 30.769 8.26 2.25 0.00 2.71
396 397 8.686334 CAAACCATCACTTATTAAGGCTAATGT 58.314 33.333 8.26 0.00 0.00 2.71
397 398 8.686334 ACAAACCATCACTTATTAAGGCTAATG 58.314 33.333 8.26 5.79 0.00 1.90
398 399 8.686334 CACAAACCATCACTTATTAAGGCTAAT 58.314 33.333 8.26 0.00 0.00 1.73
399 400 7.668052 ACACAAACCATCACTTATTAAGGCTAA 59.332 33.333 8.26 0.00 0.00 3.09
400 401 7.172342 ACACAAACCATCACTTATTAAGGCTA 58.828 34.615 8.26 0.00 0.00 3.93
401 402 6.010219 ACACAAACCATCACTTATTAAGGCT 58.990 36.000 8.26 0.00 0.00 4.58
402 403 6.267496 ACACAAACCATCACTTATTAAGGC 57.733 37.500 8.26 0.00 0.00 4.35
406 407 8.962679 GGGAATTACACAAACCATCACTTATTA 58.037 33.333 0.00 0.00 0.00 0.98
407 408 7.673926 AGGGAATTACACAAACCATCACTTATT 59.326 33.333 0.00 0.00 0.00 1.40
408 409 7.182060 AGGGAATTACACAAACCATCACTTAT 58.818 34.615 0.00 0.00 0.00 1.73
409 410 6.548321 AGGGAATTACACAAACCATCACTTA 58.452 36.000 0.00 0.00 0.00 2.24
410 411 5.393866 AGGGAATTACACAAACCATCACTT 58.606 37.500 0.00 0.00 0.00 3.16
411 412 4.998051 AGGGAATTACACAAACCATCACT 58.002 39.130 0.00 0.00 0.00 3.41
412 413 4.764823 TGAGGGAATTACACAAACCATCAC 59.235 41.667 0.00 0.00 36.70 3.06
413 414 4.764823 GTGAGGGAATTACACAAACCATCA 59.235 41.667 0.00 0.00 38.72 3.07
414 415 5.010282 AGTGAGGGAATTACACAAACCATC 58.990 41.667 0.00 0.00 37.05 3.51
415 416 4.998051 AGTGAGGGAATTACACAAACCAT 58.002 39.130 0.00 0.00 37.05 3.55
416 417 4.104102 AGAGTGAGGGAATTACACAAACCA 59.896 41.667 0.00 0.00 37.05 3.67
417 418 4.455877 CAGAGTGAGGGAATTACACAAACC 59.544 45.833 0.00 0.00 37.05 3.27
418 419 4.455877 CCAGAGTGAGGGAATTACACAAAC 59.544 45.833 0.00 0.00 37.05 2.93
419 420 4.104102 ACCAGAGTGAGGGAATTACACAAA 59.896 41.667 0.00 0.00 37.05 2.83
420 421 3.650942 ACCAGAGTGAGGGAATTACACAA 59.349 43.478 0.00 0.00 37.05 3.33
421 422 3.248024 ACCAGAGTGAGGGAATTACACA 58.752 45.455 0.00 0.00 37.05 3.72
422 423 3.676324 CGACCAGAGTGAGGGAATTACAC 60.676 52.174 0.00 0.00 35.15 2.90
423 424 2.496070 CGACCAGAGTGAGGGAATTACA 59.504 50.000 0.00 0.00 0.00 2.41
424 425 2.159085 CCGACCAGAGTGAGGGAATTAC 60.159 54.545 0.00 0.00 0.00 1.89
425 426 2.108168 CCGACCAGAGTGAGGGAATTA 58.892 52.381 0.00 0.00 0.00 1.40
426 427 0.905357 CCGACCAGAGTGAGGGAATT 59.095 55.000 0.00 0.00 0.00 2.17
427 428 0.041238 TCCGACCAGAGTGAGGGAAT 59.959 55.000 0.00 0.00 0.00 3.01
428 429 0.041238 ATCCGACCAGAGTGAGGGAA 59.959 55.000 0.00 0.00 0.00 3.97
429 430 0.684479 CATCCGACCAGAGTGAGGGA 60.684 60.000 0.00 0.00 0.00 4.20
430 431 1.680522 CCATCCGACCAGAGTGAGGG 61.681 65.000 0.00 0.00 0.00 4.30
431 432 1.680522 CCCATCCGACCAGAGTGAGG 61.681 65.000 0.00 0.00 0.00 3.86
432 433 0.684479 TCCCATCCGACCAGAGTGAG 60.684 60.000 0.00 0.00 0.00 3.51
433 434 0.032117 ATCCCATCCGACCAGAGTGA 60.032 55.000 0.00 0.00 0.00 3.41
434 435 1.341531 GTATCCCATCCGACCAGAGTG 59.658 57.143 0.00 0.00 0.00 3.51
435 436 1.705873 GTATCCCATCCGACCAGAGT 58.294 55.000 0.00 0.00 0.00 3.24
436 437 0.969894 GGTATCCCATCCGACCAGAG 59.030 60.000 0.00 0.00 31.89 3.35
437 438 3.143010 GGTATCCCATCCGACCAGA 57.857 57.895 0.00 0.00 31.89 3.86
444 445 1.143073 AGGAAAAGCGGTATCCCATCC 59.857 52.381 13.91 4.49 33.55 3.51
445 446 2.495084 GAGGAAAAGCGGTATCCCATC 58.505 52.381 13.91 4.82 33.55 3.51
446 447 1.143073 GGAGGAAAAGCGGTATCCCAT 59.857 52.381 13.91 0.00 33.55 4.00
456 457 4.698575 AGACGATGATTAGGAGGAAAAGC 58.301 43.478 0.00 0.00 0.00 3.51
458 459 5.932619 TGAGACGATGATTAGGAGGAAAA 57.067 39.130 0.00 0.00 0.00 2.29
463 464 5.703978 AGACATGAGACGATGATTAGGAG 57.296 43.478 0.00 0.00 0.00 3.69
488 489 2.749776 CACAACGAAAAATTGGGGGTC 58.250 47.619 0.00 0.00 0.00 4.46
779 839 2.571611 CAGAATTGCGTGCGCGTC 60.572 61.111 22.18 13.88 45.51 5.19
784 844 0.449388 CTCCTTCCAGAATTGCGTGC 59.551 55.000 0.00 0.00 0.00 5.34
826 886 5.836024 TTTCTTCTTTTCTACCCCTGCTA 57.164 39.130 0.00 0.00 0.00 3.49
851 911 1.266989 GAAAGGCCAGTTTGTTCCGAG 59.733 52.381 5.01 0.00 0.00 4.63
858 918 1.112916 AACGGGGAAAGGCCAGTTTG 61.113 55.000 5.01 0.00 36.17 2.93
957 1026 2.517402 CGTCGGGGAGGAGAGGAG 60.517 72.222 0.00 0.00 0.00 3.69
958 1027 4.816984 GCGTCGGGGAGGAGAGGA 62.817 72.222 0.00 0.00 0.00 3.71
1596 1671 5.083533 ACTGCAATTCCAACAAGAACAAA 57.916 34.783 0.00 0.00 0.00 2.83
1602 1680 1.267806 AGCGACTGCAATTCCAACAAG 59.732 47.619 0.00 0.00 46.23 3.16
1699 1778 4.037923 AGGACTGAATCGCAACAACAAATT 59.962 37.500 0.00 0.00 0.00 1.82
1701 1782 2.948979 AGGACTGAATCGCAACAACAAA 59.051 40.909 0.00 0.00 0.00 2.83
1704 1785 3.626028 AAAGGACTGAATCGCAACAAC 57.374 42.857 0.00 0.00 0.00 3.32
1709 1790 4.133820 TCAAAGAAAAGGACTGAATCGCA 58.866 39.130 0.00 0.00 0.00 5.10
1712 1793 6.367149 GCCAAATCAAAGAAAAGGACTGAATC 59.633 38.462 0.00 0.00 0.00 2.52
1717 1798 5.010415 CAGAGCCAAATCAAAGAAAAGGACT 59.990 40.000 0.00 0.00 0.00 3.85
1720 1801 5.458041 TCAGAGCCAAATCAAAGAAAAGG 57.542 39.130 0.00 0.00 0.00 3.11
1755 1836 2.095364 CAGCATTCACCTCTGCAAGAAC 60.095 50.000 0.00 0.00 46.34 3.01
1874 1955 6.256104 CAGTTCTGAGTTATGAAGCAGAGATG 59.744 42.308 0.00 0.00 38.48 2.90
2027 2108 4.446311 CCCCACTAAGGATCATAACCTTGG 60.446 50.000 9.13 8.63 45.74 3.61
2055 2136 5.450818 ACCCATGTACATAACAGGACAAT 57.549 39.130 8.32 0.00 42.55 2.71
2096 2179 9.643693 AACTGTTTCCTGCATTTTCATATAAAG 57.356 29.630 0.00 0.00 0.00 1.85
2108 2191 4.512571 GCAAAATTGAACTGTTTCCTGCAT 59.487 37.500 0.00 0.00 0.00 3.96
2135 2218 3.685836 AAAACACCTCAACGCTACAAC 57.314 42.857 0.00 0.00 0.00 3.32
2144 2227 6.616947 CACAAGAACACTTAAAACACCTCAA 58.383 36.000 0.00 0.00 0.00 3.02
2223 2363 3.005472 ACTCCGTACATCCCAACATATCG 59.995 47.826 0.00 0.00 0.00 2.92
2373 2518 8.487848 TCATATAGGAAACCTTCACGGATTAAA 58.512 33.333 0.00 0.00 34.61 1.52
2451 2596 2.155924 GCGACTTGCACAAGAGTACTTC 59.844 50.000 16.95 2.39 45.45 3.01
2473 2618 3.004629 CACAACAAGCAAATGCAGACCTA 59.995 43.478 8.28 0.00 45.16 3.08
2475 2620 2.129607 CACAACAAGCAAATGCAGACC 58.870 47.619 8.28 0.00 45.16 3.85
2649 2801 6.666113 TGCCATGCATATAAATGATCTTCCAT 59.334 34.615 0.00 0.00 34.84 3.41
2680 2832 3.619233 TTTTGCGCAAAACTAGGAGAC 57.381 42.857 37.21 0.00 35.57 3.36
2695 2847 3.579335 TTACTTACCCGCCAATTTTGC 57.421 42.857 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.