Multiple sequence alignment - TraesCS3A01G260200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G260200 chr3A 100.000 3071 0 0 1 3071 482938065 482934995 0.000000e+00 5672.0
1 TraesCS3A01G260200 chr3A 88.140 2479 167 60 433 2802 482929428 482926968 0.000000e+00 2832.0
2 TraesCS3A01G260200 chr3D 90.124 2653 166 48 1 2610 362425638 362423039 0.000000e+00 3360.0
3 TraesCS3A01G260200 chr3D 88.790 2141 158 32 823 2901 362855241 362857361 0.000000e+00 2549.0
4 TraesCS3A01G260200 chr3D 89.535 344 29 5 450 789 362854902 362855242 2.190000e-116 429.0
5 TraesCS3A01G260200 chr3B 90.226 2343 150 27 1 2329 472307932 472305655 0.000000e+00 2985.0
6 TraesCS3A01G260200 chr3B 86.768 1640 154 31 1311 2901 472586375 472588000 0.000000e+00 1768.0
7 TraesCS3A01G260200 chr3B 88.975 517 27 7 823 1311 472584792 472585306 2.020000e-171 612.0
8 TraesCS3A01G260200 chr3B 90.116 344 29 4 428 769 472584437 472584777 2.810000e-120 442.0
9 TraesCS3A01G260200 chr7A 83.562 730 114 5 1294 2020 722767915 722768641 0.000000e+00 678.0
10 TraesCS3A01G260200 chr2D 80.235 936 157 21 1098 2025 637802164 637803079 0.000000e+00 678.0
11 TraesCS3A01G260200 chr2D 88.732 142 15 1 1125 1265 12875800 12875941 4.070000e-39 172.0
12 TraesCS3A01G260200 chr7D 83.106 734 122 2 1294 2026 627196133 627196865 0.000000e+00 667.0
13 TraesCS3A01G260200 chr7D 100.000 29 0 0 10 38 170293717 170293689 2.000000e-03 54.7
14 TraesCS3A01G260200 chr7B 83.714 700 110 4 1338 2035 727536937 727536240 0.000000e+00 658.0
15 TraesCS3A01G260200 chr1D 79.536 948 153 28 1090 2024 342170302 342171221 3.340000e-179 638.0
16 TraesCS3A01G260200 chr1A 78.564 947 164 27 1090 2024 441842041 441842960 3.410000e-164 588.0
17 TraesCS3A01G260200 chr5D 78.144 334 57 13 1 325 234143767 234144093 6.720000e-47 198.0
18 TraesCS3A01G260200 chr2B 89.437 142 14 1 1125 1265 23576320 23576461 8.750000e-41 178.0
19 TraesCS3A01G260200 chr5B 82.464 211 26 9 1 205 12687108 12687313 1.130000e-39 174.0
20 TraesCS3A01G260200 chr5A 79.537 259 34 14 2 254 654384467 654384222 1.890000e-37 167.0
21 TraesCS3A01G260200 chr6A 79.688 128 17 9 19 141 116856546 116856423 1.960000e-12 84.2
22 TraesCS3A01G260200 chr6A 92.683 41 0 2 609 646 599757461 599757501 4.280000e-04 56.5
23 TraesCS3A01G260200 chr4A 75.635 197 33 10 2710 2904 575796401 575796584 1.960000e-12 84.2
24 TraesCS3A01G260200 chr4B 100.000 29 0 0 10 38 9045027 9044999 2.000000e-03 54.7
25 TraesCS3A01G260200 chr4B 92.105 38 3 0 1 38 10596284 10596321 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G260200 chr3A 482934995 482938065 3070 True 5672.000000 5672 100.000000 1 3071 1 chr3A.!!$R2 3070
1 TraesCS3A01G260200 chr3A 482926968 482929428 2460 True 2832.000000 2832 88.140000 433 2802 1 chr3A.!!$R1 2369
2 TraesCS3A01G260200 chr3D 362423039 362425638 2599 True 3360.000000 3360 90.124000 1 2610 1 chr3D.!!$R1 2609
3 TraesCS3A01G260200 chr3D 362854902 362857361 2459 False 1489.000000 2549 89.162500 450 2901 2 chr3D.!!$F1 2451
4 TraesCS3A01G260200 chr3B 472305655 472307932 2277 True 2985.000000 2985 90.226000 1 2329 1 chr3B.!!$R1 2328
5 TraesCS3A01G260200 chr3B 472584437 472588000 3563 False 940.666667 1768 88.619667 428 2901 3 chr3B.!!$F1 2473
6 TraesCS3A01G260200 chr7A 722767915 722768641 726 False 678.000000 678 83.562000 1294 2020 1 chr7A.!!$F1 726
7 TraesCS3A01G260200 chr2D 637802164 637803079 915 False 678.000000 678 80.235000 1098 2025 1 chr2D.!!$F2 927
8 TraesCS3A01G260200 chr7D 627196133 627196865 732 False 667.000000 667 83.106000 1294 2026 1 chr7D.!!$F1 732
9 TraesCS3A01G260200 chr7B 727536240 727536937 697 True 658.000000 658 83.714000 1338 2035 1 chr7B.!!$R1 697
10 TraesCS3A01G260200 chr1D 342170302 342171221 919 False 638.000000 638 79.536000 1090 2024 1 chr1D.!!$F1 934
11 TraesCS3A01G260200 chr1A 441842041 441842960 919 False 588.000000 588 78.564000 1090 2024 1 chr1A.!!$F1 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 585 0.040514 CGCAAGCGACATCACCAAAA 60.041 50.0 9.11 0.0 42.83 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 3641 0.106918 TCCACTTTTCACTGGCGGTT 60.107 50.0 0.0 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 122 5.546499 TCAAACCTAGGTGTCCAATCTACTT 59.454 40.000 17.14 0.00 0.00 2.24
119 123 5.678955 AACCTAGGTGTCCAATCTACTTC 57.321 43.478 17.14 0.00 0.00 3.01
142 146 5.179368 TCCATGTGAAGTCTCGTGAAAAATC 59.821 40.000 4.54 0.00 0.00 2.17
143 147 5.385617 CATGTGAAGTCTCGTGAAAAATCC 58.614 41.667 0.00 0.00 0.00 3.01
144 148 3.493129 TGTGAAGTCTCGTGAAAAATCCG 59.507 43.478 0.00 0.00 0.00 4.18
219 223 9.479549 AATAATACTGTTCTGTTTGGATGGATT 57.520 29.630 0.00 0.00 0.00 3.01
222 226 4.895297 ACTGTTCTGTTTGGATGGATTGTT 59.105 37.500 0.00 0.00 0.00 2.83
317 321 2.091610 TGGACAACCAGGTTTGATTCCA 60.092 45.455 14.21 14.21 41.77 3.53
318 322 2.962421 GGACAACCAGGTTTGATTCCAA 59.038 45.455 0.44 0.00 35.97 3.53
319 323 3.386402 GGACAACCAGGTTTGATTCCAAA 59.614 43.478 0.44 0.00 36.74 3.28
320 324 4.040339 GGACAACCAGGTTTGATTCCAAAT 59.960 41.667 0.44 0.00 39.00 2.32
321 325 5.454613 GGACAACCAGGTTTGATTCCAAATT 60.455 40.000 0.44 0.00 39.00 1.82
325 329 8.217111 ACAACCAGGTTTGATTCCAAATTATTT 58.783 29.630 0.44 0.00 43.37 1.40
328 332 9.942850 ACCAGGTTTGATTCCAAATTATTTTAG 57.057 29.630 0.00 0.00 43.37 1.85
340 344 8.188139 TCCAAATTATTTTAGTTTCTCATCCGC 58.812 33.333 0.00 0.00 0.00 5.54
342 346 9.013490 CAAATTATTTTAGTTTCTCATCCGCAG 57.987 33.333 0.00 0.00 0.00 5.18
347 351 6.627395 TTTAGTTTCTCATCCGCAGAAAAA 57.373 33.333 0.00 0.00 35.28 1.94
403 407 9.515226 TTAATATTTATATGAAGGTGTGGAGCC 57.485 33.333 0.00 0.00 0.00 4.70
416 420 2.266055 GAGCCCCACGAACTCCTG 59.734 66.667 0.00 0.00 0.00 3.86
417 421 3.959991 GAGCCCCACGAACTCCTGC 62.960 68.421 0.00 0.00 0.00 4.85
426 431 1.990563 ACGAACTCCTGCGTATTTTCG 59.009 47.619 7.72 7.72 39.21 3.46
433 438 3.864243 TCCTGCGTATTTTCGGTTGTAT 58.136 40.909 0.00 0.00 0.00 2.29
550 585 0.040514 CGCAAGCGACATCACCAAAA 60.041 50.000 9.11 0.00 42.83 2.44
647 686 2.150424 CATGCTTGCTTGCTTGCAC 58.850 52.632 12.96 0.00 43.20 4.57
648 687 0.598942 CATGCTTGCTTGCTTGCACA 60.599 50.000 12.96 1.41 43.20 4.57
672 712 2.365582 GCAGGAAGCGGGAGAAAAATA 58.634 47.619 0.00 0.00 0.00 1.40
675 715 3.316308 CAGGAAGCGGGAGAAAAATATGG 59.684 47.826 0.00 0.00 0.00 2.74
679 719 1.963515 GCGGGAGAAAAATATGGCCAT 59.036 47.619 24.45 24.45 0.00 4.40
683 723 4.473444 GGGAGAAAAATATGGCCATCAGA 58.527 43.478 24.80 5.04 0.00 3.27
821 886 4.849518 TCACTGACTCATCTGTAGCTAGT 58.150 43.478 0.00 0.00 35.42 2.57
852 917 3.513462 TCGAAACATGCGTACAAAGTG 57.487 42.857 0.00 0.00 0.00 3.16
930 995 1.038130 AGTAGAGCGATCACGGCCTT 61.038 55.000 2.38 0.00 40.15 4.35
975 1040 4.531854 TGTGGCTTGCTGGCTATATAAAA 58.468 39.130 5.59 0.00 42.34 1.52
994 1060 0.748005 AACGTGCACTCACCAGCTTT 60.748 50.000 16.19 0.00 40.04 3.51
995 1061 1.160329 ACGTGCACTCACCAGCTTTC 61.160 55.000 16.19 0.00 40.04 2.62
996 1062 0.882042 CGTGCACTCACCAGCTTTCT 60.882 55.000 16.19 0.00 40.04 2.52
1249 1344 1.677966 CTGCCAGAGCCAGTGCAAT 60.678 57.895 0.00 0.00 41.13 3.56
1612 2803 3.965539 GAGCTCGCAGTGGCCATGT 62.966 63.158 9.72 0.00 36.38 3.21
1783 2974 2.032634 GTTCTGGATGACGCCGCAA 61.033 57.895 0.00 0.00 0.00 4.85
2014 3205 1.136828 ACCTGGACTGCTACAACCAA 58.863 50.000 0.00 0.00 31.85 3.67
2032 3223 1.082117 AAAGGCCGTTCGCATAGTCG 61.082 55.000 0.00 0.00 40.31 4.18
2063 3258 2.425539 TGATGCGAGAAGACATGCAAA 58.574 42.857 0.00 0.00 41.22 3.68
2111 3306 1.006086 CAATGGCGTTGCGATAGACA 58.994 50.000 6.49 0.00 39.76 3.41
2126 3324 4.378563 CGATAGACATCGCCTAGTACAAGG 60.379 50.000 0.00 0.00 46.80 3.61
2147 3346 3.067106 GGAATAATGGTGCGATCATCGT 58.933 45.455 9.23 0.00 42.81 3.73
2171 3370 4.933330 AGATGCGTGTGTAGTCGATTATT 58.067 39.130 0.00 0.00 0.00 1.40
2265 3465 2.986050 ACCATCAACCGGGTAGGATAT 58.014 47.619 6.32 3.86 45.00 1.63
2343 3558 7.526142 ACAGACATAGAAACTACAGAAGTCA 57.474 36.000 0.00 0.00 37.50 3.41
2355 3570 0.321122 AGAAGTCAGCCAAAGAGCGG 60.321 55.000 0.00 0.00 38.01 5.52
2361 3576 0.886490 CAGCCAAAGAGCGGAACTGT 60.886 55.000 0.00 0.00 38.01 3.55
2369 3584 1.070758 AGAGCGGAACTGTCAACACAT 59.929 47.619 0.00 0.00 0.00 3.21
2372 3587 1.877637 CGGAACTGTCAACACATGGA 58.122 50.000 0.00 0.00 0.00 3.41
2392 3607 4.464244 TGGAGAAACAAAACCATGTTGTCA 59.536 37.500 1.11 0.00 42.49 3.58
2418 3633 2.032799 GCACAACATCGACCAGAACAAA 59.967 45.455 0.00 0.00 0.00 2.83
2425 3640 0.865769 CGACCAGAACAAAGGGAACG 59.134 55.000 0.00 0.00 0.00 3.95
2426 3641 1.539496 CGACCAGAACAAAGGGAACGA 60.539 52.381 0.00 0.00 0.00 3.85
2428 3643 2.289820 GACCAGAACAAAGGGAACGAAC 59.710 50.000 0.00 0.00 0.00 3.95
2429 3644 1.607148 CCAGAACAAAGGGAACGAACC 59.393 52.381 0.00 0.00 0.00 3.62
2430 3645 1.263217 CAGAACAAAGGGAACGAACCG 59.737 52.381 0.00 0.00 0.00 4.44
2432 3647 1.449726 AACAAAGGGAACGAACCGCC 61.450 55.000 0.00 0.00 0.00 6.13
2433 3648 1.894756 CAAAGGGAACGAACCGCCA 60.895 57.895 0.00 0.00 0.00 5.69
2434 3649 1.599797 AAAGGGAACGAACCGCCAG 60.600 57.895 0.00 0.00 0.00 4.85
2435 3650 2.333701 AAAGGGAACGAACCGCCAGT 62.334 55.000 0.00 0.00 0.00 4.00
2436 3651 3.047877 GGGAACGAACCGCCAGTG 61.048 66.667 0.00 0.00 0.00 3.66
2438 3653 1.595929 GGAACGAACCGCCAGTGAA 60.596 57.895 0.00 0.00 0.00 3.18
2440 3655 0.658897 GAACGAACCGCCAGTGAAAA 59.341 50.000 0.00 0.00 0.00 2.29
2441 3656 0.661020 AACGAACCGCCAGTGAAAAG 59.339 50.000 0.00 0.00 0.00 2.27
2443 3658 0.041312 CGAACCGCCAGTGAAAAGTG 60.041 55.000 0.00 0.00 0.00 3.16
2657 3905 2.520465 ATCCGAGGACGCATTGCACA 62.520 55.000 9.69 0.00 38.29 4.57
2668 3916 2.273179 ATTGCACAGCAGCCACCAG 61.273 57.895 0.00 0.00 40.61 4.00
2810 4069 0.331954 GGGGGAAGGAAGAGGAAACC 59.668 60.000 0.00 0.00 0.00 3.27
2811 4070 1.373536 GGGGAAGGAAGAGGAAACCT 58.626 55.000 0.00 0.00 36.03 3.50
2816 4075 4.202535 GGGAAGGAAGAGGAAACCTAACAA 60.203 45.833 0.00 0.00 31.76 2.83
2820 4079 2.474410 AGAGGAAACCTAACAAGCCG 57.526 50.000 0.00 0.00 31.76 5.52
2835 4094 2.128507 GCCGTCAGGAGGGGAGTAG 61.129 68.421 9.81 0.00 41.02 2.57
2853 4112 4.749310 CGAAGCCAGAGCACCGCT 62.749 66.667 0.00 0.00 43.88 5.52
2855 4114 3.890936 GAAGCCAGAGCACCGCTGT 62.891 63.158 0.00 0.00 39.88 4.40
2861 4120 4.400109 GAGCACCGCTGTCGTCGA 62.400 66.667 0.00 0.00 39.88 4.20
2885 4144 2.180769 CGATGCGGAGTCGACCAA 59.819 61.111 13.01 0.00 41.40 3.67
2892 4151 0.179108 CGGAGTCGACCAAGGGATTC 60.179 60.000 13.01 0.00 39.00 2.52
2904 4163 3.411700 GGATTCCCCCGTTCCAGT 58.588 61.111 0.00 0.00 0.00 4.00
2905 4164 1.223763 GGATTCCCCCGTTCCAGTC 59.776 63.158 0.00 0.00 0.00 3.51
2906 4165 1.272554 GGATTCCCCCGTTCCAGTCT 61.273 60.000 0.00 0.00 0.00 3.24
2907 4166 0.618981 GATTCCCCCGTTCCAGTCTT 59.381 55.000 0.00 0.00 0.00 3.01
2908 4167 0.618981 ATTCCCCCGTTCCAGTCTTC 59.381 55.000 0.00 0.00 0.00 2.87
2909 4168 0.473117 TTCCCCCGTTCCAGTCTTCT 60.473 55.000 0.00 0.00 0.00 2.85
2910 4169 1.192146 TCCCCCGTTCCAGTCTTCTG 61.192 60.000 0.00 0.00 41.01 3.02
2911 4170 1.481056 CCCCCGTTCCAGTCTTCTGT 61.481 60.000 0.00 0.00 39.82 3.41
2912 4171 0.037232 CCCCGTTCCAGTCTTCTGTC 60.037 60.000 0.00 0.00 39.82 3.51
2913 4172 0.388649 CCCGTTCCAGTCTTCTGTCG 60.389 60.000 0.00 0.00 39.82 4.35
2914 4173 1.009389 CCGTTCCAGTCTTCTGTCGC 61.009 60.000 0.00 0.00 39.82 5.19
2915 4174 1.009389 CGTTCCAGTCTTCTGTCGCC 61.009 60.000 0.00 0.00 39.82 5.54
2916 4175 0.033504 GTTCCAGTCTTCTGTCGCCA 59.966 55.000 0.00 0.00 39.82 5.69
2917 4176 0.033504 TTCCAGTCTTCTGTCGCCAC 59.966 55.000 0.00 0.00 39.82 5.01
2918 4177 1.112916 TCCAGTCTTCTGTCGCCACA 61.113 55.000 0.00 0.00 39.82 4.17
2919 4178 0.036952 CCAGTCTTCTGTCGCCACAT 60.037 55.000 0.00 0.00 39.82 3.21
2920 4179 1.354040 CAGTCTTCTGTCGCCACATC 58.646 55.000 0.00 0.00 36.97 3.06
2921 4180 0.969149 AGTCTTCTGTCGCCACATCA 59.031 50.000 0.00 0.00 0.00 3.07
2922 4181 1.552337 AGTCTTCTGTCGCCACATCAT 59.448 47.619 0.00 0.00 0.00 2.45
2923 4182 1.929836 GTCTTCTGTCGCCACATCATC 59.070 52.381 0.00 0.00 0.00 2.92
2924 4183 1.827344 TCTTCTGTCGCCACATCATCT 59.173 47.619 0.00 0.00 0.00 2.90
2925 4184 1.931841 CTTCTGTCGCCACATCATCTG 59.068 52.381 0.00 0.00 0.00 2.90
2926 4185 0.176449 TCTGTCGCCACATCATCTGG 59.824 55.000 0.00 0.00 0.00 3.86
2927 4186 0.812811 CTGTCGCCACATCATCTGGG 60.813 60.000 0.00 0.00 0.00 4.45
2936 4195 4.368565 CACATCATCTGGGGATTGATCT 57.631 45.455 0.00 0.00 0.00 2.75
2937 4196 4.072839 CACATCATCTGGGGATTGATCTG 58.927 47.826 0.00 0.00 0.00 2.90
2938 4197 3.074094 ACATCATCTGGGGATTGATCTGG 59.926 47.826 0.00 0.00 0.00 3.86
2939 4198 2.780414 TCATCTGGGGATTGATCTGGT 58.220 47.619 0.00 0.00 0.00 4.00
2940 4199 3.940335 TCATCTGGGGATTGATCTGGTA 58.060 45.455 0.00 0.00 0.00 3.25
2941 4200 3.906218 TCATCTGGGGATTGATCTGGTAG 59.094 47.826 0.00 0.00 0.00 3.18
2942 4201 2.050144 TCTGGGGATTGATCTGGTAGC 58.950 52.381 0.00 0.00 0.00 3.58
2943 4202 1.072965 CTGGGGATTGATCTGGTAGCC 59.927 57.143 0.00 0.00 0.00 3.93
2944 4203 1.345422 TGGGGATTGATCTGGTAGCCT 60.345 52.381 0.00 0.00 0.00 4.58
2945 4204 1.072965 GGGGATTGATCTGGTAGCCTG 59.927 57.143 0.00 0.00 0.00 4.85
2946 4205 2.050144 GGGATTGATCTGGTAGCCTGA 58.950 52.381 0.00 0.00 36.01 3.86
2947 4206 2.439507 GGGATTGATCTGGTAGCCTGAA 59.560 50.000 0.00 0.00 35.24 3.02
2948 4207 3.117888 GGGATTGATCTGGTAGCCTGAAA 60.118 47.826 0.00 0.00 35.24 2.69
2949 4208 4.133078 GGATTGATCTGGTAGCCTGAAAG 58.867 47.826 0.00 0.00 35.24 2.62
2961 4220 3.329300 CTGAAAGGGCCATATCGGG 57.671 57.895 6.18 0.00 34.06 5.14
2962 4221 0.764890 CTGAAAGGGCCATATCGGGA 59.235 55.000 6.18 0.00 34.06 5.14
2963 4222 1.352352 CTGAAAGGGCCATATCGGGAT 59.648 52.381 6.18 0.00 34.06 3.85
2964 4223 1.351017 TGAAAGGGCCATATCGGGATC 59.649 52.381 6.18 0.00 34.06 3.36
2965 4224 1.351017 GAAAGGGCCATATCGGGATCA 59.649 52.381 6.18 0.00 34.06 2.92
2966 4225 0.987294 AAGGGCCATATCGGGATCAG 59.013 55.000 6.18 0.00 34.06 2.90
2967 4226 1.078143 GGGCCATATCGGGATCAGC 60.078 63.158 4.39 0.00 34.06 4.26
2968 4227 1.448540 GGCCATATCGGGATCAGCG 60.449 63.158 0.00 0.00 34.06 5.18
2969 4228 1.591703 GCCATATCGGGATCAGCGA 59.408 57.895 0.00 0.00 34.06 4.93
2970 4229 0.176680 GCCATATCGGGATCAGCGAT 59.823 55.000 0.00 0.00 34.06 4.58
2971 4230 1.931906 CCATATCGGGATCAGCGATG 58.068 55.000 0.00 0.00 0.00 3.84
2972 4231 1.472201 CCATATCGGGATCAGCGATGG 60.472 57.143 0.00 1.27 0.00 3.51
2973 4232 0.826715 ATATCGGGATCAGCGATGGG 59.173 55.000 0.00 0.00 0.00 4.00
2974 4233 1.257750 TATCGGGATCAGCGATGGGG 61.258 60.000 0.00 0.00 0.00 4.96
2975 4234 4.320456 CGGGATCAGCGATGGGGG 62.320 72.222 0.00 0.00 0.00 5.40
2976 4235 2.849162 GGGATCAGCGATGGGGGA 60.849 66.667 0.00 0.00 0.00 4.81
2977 4236 2.452064 GGGATCAGCGATGGGGGAA 61.452 63.158 0.00 0.00 0.00 3.97
2978 4237 1.531748 GGATCAGCGATGGGGGAAA 59.468 57.895 0.00 0.00 0.00 3.13
2979 4238 0.536006 GGATCAGCGATGGGGGAAAG 60.536 60.000 0.00 0.00 0.00 2.62
2980 4239 1.152881 ATCAGCGATGGGGGAAAGC 60.153 57.895 0.00 0.00 0.00 3.51
2981 4240 2.631012 ATCAGCGATGGGGGAAAGCC 62.631 60.000 0.00 0.00 0.00 4.35
2982 4241 4.489771 AGCGATGGGGGAAAGCCG 62.490 66.667 0.00 0.00 33.83 5.52
2989 4248 3.508840 GGGGAAAGCCGCATCACG 61.509 66.667 0.00 0.00 45.89 4.35
3007 4266 1.443828 GGAACGAGGCCAGAGATCC 59.556 63.158 5.01 5.56 0.00 3.36
3008 4267 1.066587 GAACGAGGCCAGAGATCCG 59.933 63.158 5.01 0.00 0.00 4.18
3009 4268 1.379977 AACGAGGCCAGAGATCCGA 60.380 57.895 5.01 0.00 0.00 4.55
3010 4269 1.388065 AACGAGGCCAGAGATCCGAG 61.388 60.000 5.01 0.00 0.00 4.63
3011 4270 2.733945 GAGGCCAGAGATCCGAGC 59.266 66.667 5.01 0.00 0.00 5.03
3012 4271 2.042537 AGGCCAGAGATCCGAGCA 60.043 61.111 5.01 0.00 0.00 4.26
3013 4272 2.086251 GAGGCCAGAGATCCGAGCAG 62.086 65.000 5.01 0.00 0.00 4.24
3014 4273 2.280052 GCCAGAGATCCGAGCAGC 60.280 66.667 0.00 0.00 0.00 5.25
3015 4274 2.027314 CCAGAGATCCGAGCAGCG 59.973 66.667 0.00 0.00 40.47 5.18
3016 4275 2.484928 CCAGAGATCCGAGCAGCGA 61.485 63.158 0.21 0.00 44.57 4.93
3017 4276 1.435105 CAGAGATCCGAGCAGCGAA 59.565 57.895 0.21 0.00 44.57 4.70
3018 4277 0.594540 CAGAGATCCGAGCAGCGAAG 60.595 60.000 0.21 0.00 44.57 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 92 4.631234 TGGACACCTAGGTTTGATATCCT 58.369 43.478 13.15 0.00 37.80 3.24
118 122 3.744238 TTTCACGAGACTTCACATGGA 57.256 42.857 0.00 0.00 0.00 3.41
119 123 4.811555 TTTTTCACGAGACTTCACATGG 57.188 40.909 0.00 0.00 0.00 3.66
195 199 7.888021 ACAATCCATCCAAACAGAACAGTATTA 59.112 33.333 0.00 0.00 0.00 0.98
202 206 4.559153 CCAACAATCCATCCAAACAGAAC 58.441 43.478 0.00 0.00 0.00 3.01
203 207 3.006752 GCCAACAATCCATCCAAACAGAA 59.993 43.478 0.00 0.00 0.00 3.02
204 208 2.562298 GCCAACAATCCATCCAAACAGA 59.438 45.455 0.00 0.00 0.00 3.41
205 209 2.354003 GGCCAACAATCCATCCAAACAG 60.354 50.000 0.00 0.00 0.00 3.16
219 223 1.112315 AAAATGCAGTCCGGCCAACA 61.112 50.000 2.24 0.00 0.00 3.33
222 226 0.539438 AAGAAAATGCAGTCCGGCCA 60.539 50.000 2.24 0.00 0.00 5.36
302 306 9.942850 CTAAAATAATTTGGAATCAAACCTGGT 57.057 29.630 0.00 0.00 44.53 4.00
314 318 8.188139 GCGGATGAGAAACTAAAATAATTTGGA 58.812 33.333 0.00 0.00 31.94 3.53
317 321 8.956426 TCTGCGGATGAGAAACTAAAATAATTT 58.044 29.630 0.00 0.00 0.00 1.82
318 322 8.506168 TCTGCGGATGAGAAACTAAAATAATT 57.494 30.769 0.00 0.00 0.00 1.40
319 323 8.506168 TTCTGCGGATGAGAAACTAAAATAAT 57.494 30.769 0.00 0.00 0.00 1.28
320 324 7.915293 TTCTGCGGATGAGAAACTAAAATAA 57.085 32.000 0.00 0.00 0.00 1.40
321 325 7.915293 TTTCTGCGGATGAGAAACTAAAATA 57.085 32.000 0.00 0.00 35.07 1.40
403 407 0.108329 AATACGCAGGAGTTCGTGGG 60.108 55.000 14.71 14.71 45.95 4.61
407 411 1.323534 CCGAAAATACGCAGGAGTTCG 59.676 52.381 0.00 0.00 38.02 3.95
416 420 4.330620 TCTCCAATACAACCGAAAATACGC 59.669 41.667 0.00 0.00 0.00 4.42
417 421 5.579511 AGTCTCCAATACAACCGAAAATACG 59.420 40.000 0.00 0.00 0.00 3.06
501 508 6.070767 TGGAATTCCATTCTCTTTCTACTCGT 60.071 38.462 23.63 0.00 42.01 4.18
555 590 1.500474 ATGGATGGACAGACGTGGAT 58.500 50.000 0.00 0.00 0.00 3.41
564 599 1.317613 GCCGCATTAATGGATGGACA 58.682 50.000 17.02 0.00 0.00 4.02
672 712 1.452651 CGGTTGCTCTGATGGCCAT 60.453 57.895 20.96 20.96 0.00 4.40
675 715 1.986575 GCTTCGGTTGCTCTGATGGC 61.987 60.000 0.00 0.00 0.00 4.40
679 719 0.319900 GTCAGCTTCGGTTGCTCTGA 60.320 55.000 0.00 0.00 38.92 3.27
683 723 0.106708 TCAAGTCAGCTTCGGTTGCT 59.893 50.000 0.00 0.00 42.06 3.91
821 886 3.060230 CGCATGTTTCGATCTCGTGTAAA 59.940 43.478 0.00 0.00 40.80 2.01
852 917 1.397441 CGAGAGCGATCTAGTACGTGC 60.397 57.143 1.61 0.00 40.82 5.34
930 995 0.531974 GACGTGTCCAGCTTTCCACA 60.532 55.000 0.00 0.00 0.00 4.17
975 1040 0.748005 AAAGCTGGTGAGTGCACGTT 60.748 50.000 12.01 0.00 46.09 3.99
994 1060 0.105964 GTAGTGGTGTGTGTGCCAGA 59.894 55.000 0.00 0.00 35.14 3.86
995 1061 0.179059 TGTAGTGGTGTGTGTGCCAG 60.179 55.000 0.00 0.00 35.14 4.85
996 1062 0.462937 GTGTAGTGGTGTGTGTGCCA 60.463 55.000 0.00 0.00 0.00 4.92
998 1064 0.528901 TCGTGTAGTGGTGTGTGTGC 60.529 55.000 0.00 0.00 0.00 4.57
1303 1416 2.351253 CGACTGCGAGATAATGGAGGAG 60.351 54.545 0.00 0.00 40.82 3.69
1438 2620 0.892358 TCTTGACGTCGGTGCTACCT 60.892 55.000 11.62 0.00 35.66 3.08
1783 2974 1.078143 GCTCGAAGGCTTGGGTGAT 60.078 57.895 3.46 0.00 0.00 3.06
1990 3181 1.419381 TGTAGCAGTCCAGGTTGTCA 58.581 50.000 0.00 0.00 0.00 3.58
2014 3205 1.518572 CGACTATGCGAACGGCCTT 60.519 57.895 0.00 0.00 42.61 4.35
2032 3223 5.963004 GTCTTCTCGCATCATATAGTCGATC 59.037 44.000 0.00 0.00 0.00 3.69
2037 3228 5.167121 GCATGTCTTCTCGCATCATATAGT 58.833 41.667 0.00 0.00 0.00 2.12
2069 3264 8.630054 TTGTTACAATATTTAGTGTGAGCCTT 57.370 30.769 0.00 0.00 35.11 4.35
2070 3265 8.677300 CATTGTTACAATATTTAGTGTGAGCCT 58.323 33.333 10.46 0.00 35.11 4.58
2071 3266 7.915397 CCATTGTTACAATATTTAGTGTGAGCC 59.085 37.037 10.46 0.00 35.11 4.70
2072 3267 7.432252 GCCATTGTTACAATATTTAGTGTGAGC 59.568 37.037 10.46 0.13 35.11 4.26
2073 3268 7.639850 CGCCATTGTTACAATATTTAGTGTGAG 59.360 37.037 10.46 0.00 35.11 3.51
2074 3269 7.119992 ACGCCATTGTTACAATATTTAGTGTGA 59.880 33.333 10.46 0.00 35.11 3.58
2075 3270 7.247728 ACGCCATTGTTACAATATTTAGTGTG 58.752 34.615 10.46 0.00 35.11 3.82
2076 3271 7.385778 ACGCCATTGTTACAATATTTAGTGT 57.614 32.000 10.46 7.27 38.19 3.55
2077 3272 7.253618 GCAACGCCATTGTTACAATATTTAGTG 60.254 37.037 10.46 6.41 40.77 2.74
2078 3273 6.750039 GCAACGCCATTGTTACAATATTTAGT 59.250 34.615 10.46 4.54 40.77 2.24
2111 3306 5.280011 CCATTATTCCCTTGTACTAGGCGAT 60.280 44.000 16.97 14.05 33.73 4.58
2126 3324 3.067106 ACGATGATCGCACCATTATTCC 58.933 45.455 15.62 0.00 45.12 3.01
2147 3346 4.365899 AATCGACTACACACGCATCTTA 57.634 40.909 0.00 0.00 0.00 2.10
2265 3465 6.318648 CAGCCCTTGTAATAATCTGCACTTTA 59.681 38.462 0.00 0.00 0.00 1.85
2341 3556 0.603707 CAGTTCCGCTCTTTGGCTGA 60.604 55.000 0.00 0.00 0.00 4.26
2343 3558 0.603975 GACAGTTCCGCTCTTTGGCT 60.604 55.000 0.00 0.00 0.00 4.75
2355 3570 4.335315 TGTTTCTCCATGTGTTGACAGTTC 59.665 41.667 0.00 0.00 34.87 3.01
2361 3576 4.464244 TGGTTTTGTTTCTCCATGTGTTGA 59.536 37.500 0.00 0.00 0.00 3.18
2369 3584 4.464244 TGACAACATGGTTTTGTTTCTCCA 59.536 37.500 0.00 0.00 37.73 3.86
2372 3587 5.652014 TCTCTGACAACATGGTTTTGTTTCT 59.348 36.000 0.00 0.00 37.73 2.52
2392 3607 0.969149 TGGTCGATGTTGTGCTCTCT 59.031 50.000 0.00 0.00 0.00 3.10
2404 3619 2.779506 GTTCCCTTTGTTCTGGTCGAT 58.220 47.619 0.00 0.00 0.00 3.59
2405 3620 1.539496 CGTTCCCTTTGTTCTGGTCGA 60.539 52.381 0.00 0.00 0.00 4.20
2418 3633 3.239253 ACTGGCGGTTCGTTCCCT 61.239 61.111 0.00 0.00 0.00 4.20
2425 3640 0.310854 CCACTTTTCACTGGCGGTTC 59.689 55.000 0.00 0.00 0.00 3.62
2426 3641 0.106918 TCCACTTTTCACTGGCGGTT 60.107 50.000 0.00 0.00 0.00 4.44
2428 3643 1.237285 CCTCCACTTTTCACTGGCGG 61.237 60.000 0.00 0.00 0.00 6.13
2429 3644 0.250295 TCCTCCACTTTTCACTGGCG 60.250 55.000 0.00 0.00 0.00 5.69
2430 3645 1.528129 CTCCTCCACTTTTCACTGGC 58.472 55.000 0.00 0.00 0.00 4.85
2432 3647 3.604582 GATCCTCCTCCACTTTTCACTG 58.395 50.000 0.00 0.00 0.00 3.66
2433 3648 2.234908 CGATCCTCCTCCACTTTTCACT 59.765 50.000 0.00 0.00 0.00 3.41
2434 3649 2.233922 TCGATCCTCCTCCACTTTTCAC 59.766 50.000 0.00 0.00 0.00 3.18
2435 3650 2.497675 CTCGATCCTCCTCCACTTTTCA 59.502 50.000 0.00 0.00 0.00 2.69
2436 3651 2.740256 GCTCGATCCTCCTCCACTTTTC 60.740 54.545 0.00 0.00 0.00 2.29
2438 3653 0.827368 GCTCGATCCTCCTCCACTTT 59.173 55.000 0.00 0.00 0.00 2.66
2440 3655 1.456705 GGCTCGATCCTCCTCCACT 60.457 63.158 0.00 0.00 0.00 4.00
2441 3656 1.045911 AAGGCTCGATCCTCCTCCAC 61.046 60.000 8.55 0.00 34.82 4.02
2443 3658 1.745264 CAAGGCTCGATCCTCCTCC 59.255 63.158 8.55 0.00 34.82 4.30
2515 3750 0.969894 GGATGTAGGGGAGATGGTCG 59.030 60.000 0.00 0.00 0.00 4.79
2548 3786 2.190313 CTTGCCGGCCTATGAGCA 59.810 61.111 26.77 0.00 0.00 4.26
2590 3836 2.597510 GCCTTGTTGCCCTTCGGT 60.598 61.111 0.00 0.00 0.00 4.69
2599 3845 1.535204 GGGGGATGTGTGCCTTGTTG 61.535 60.000 0.00 0.00 35.87 3.33
2637 3885 0.529773 GTGCAATGCGTCCTCGGATA 60.530 55.000 0.00 0.00 46.56 2.59
2668 3916 1.028330 TGCTGCTATCTGTGGCTTGC 61.028 55.000 0.00 0.00 34.59 4.01
2672 3920 1.821332 GGGTGCTGCTATCTGTGGC 60.821 63.158 0.00 0.00 0.00 5.01
2756 4015 0.322187 CCACGGGTGAAAACCTAGGG 60.322 60.000 14.81 0.00 0.00 3.53
2810 4069 0.108138 CCCTCCTGACGGCTTGTTAG 60.108 60.000 0.00 0.00 34.10 2.34
2811 4070 1.550130 CCCCTCCTGACGGCTTGTTA 61.550 60.000 0.00 0.00 0.00 2.41
2816 4075 2.575455 CTACTCCCCTCCTGACGGCT 62.575 65.000 0.00 0.00 0.00 5.52
2820 4079 0.683504 TTCGCTACTCCCCTCCTGAC 60.684 60.000 0.00 0.00 0.00 3.51
2861 4120 2.750637 ACTCCGCATCGACCTCGT 60.751 61.111 0.00 0.00 40.80 4.18
2892 4151 1.296715 CAGAAGACTGGAACGGGGG 59.703 63.158 0.00 0.00 40.47 5.40
2902 4161 0.969149 TGATGTGGCGACAGAAGACT 59.031 50.000 7.82 0.00 44.46 3.24
2903 4162 1.929836 GATGATGTGGCGACAGAAGAC 59.070 52.381 7.82 0.00 44.46 3.01
2904 4163 1.827344 AGATGATGTGGCGACAGAAGA 59.173 47.619 7.82 0.00 44.46 2.87
2905 4164 1.931841 CAGATGATGTGGCGACAGAAG 59.068 52.381 7.82 0.00 44.46 2.85
2906 4165 1.405933 CCAGATGATGTGGCGACAGAA 60.406 52.381 7.82 0.00 44.46 3.02
2907 4166 0.176449 CCAGATGATGTGGCGACAGA 59.824 55.000 7.82 0.00 44.46 3.41
2908 4167 0.812811 CCCAGATGATGTGGCGACAG 60.813 60.000 7.82 0.00 44.46 3.51
2909 4168 1.221566 CCCAGATGATGTGGCGACA 59.778 57.895 3.31 3.31 36.22 4.35
2910 4169 1.524621 CCCCAGATGATGTGGCGAC 60.525 63.158 2.54 0.00 33.24 5.19
2911 4170 1.056125 ATCCCCAGATGATGTGGCGA 61.056 55.000 2.54 0.15 33.24 5.54
2912 4171 0.179009 AATCCCCAGATGATGTGGCG 60.179 55.000 2.54 0.00 33.24 5.69
2913 4172 1.133699 TCAATCCCCAGATGATGTGGC 60.134 52.381 2.54 0.00 33.24 5.01
2914 4173 3.074094 AGATCAATCCCCAGATGATGTGG 59.926 47.826 0.85 0.85 31.29 4.17
2915 4174 4.072839 CAGATCAATCCCCAGATGATGTG 58.927 47.826 0.00 0.00 31.54 3.21
2916 4175 3.074094 CCAGATCAATCCCCAGATGATGT 59.926 47.826 0.00 0.00 31.29 3.06
2917 4176 3.074094 ACCAGATCAATCCCCAGATGATG 59.926 47.826 0.00 0.00 31.29 3.07
2918 4177 3.333893 ACCAGATCAATCCCCAGATGAT 58.666 45.455 0.00 0.00 31.29 2.45
2919 4178 2.780414 ACCAGATCAATCCCCAGATGA 58.220 47.619 0.00 0.00 31.29 2.92
2920 4179 3.558746 GCTACCAGATCAATCCCCAGATG 60.559 52.174 0.00 0.00 31.29 2.90
2921 4180 2.641815 GCTACCAGATCAATCCCCAGAT 59.358 50.000 0.00 0.00 0.00 2.90
2922 4181 2.050144 GCTACCAGATCAATCCCCAGA 58.950 52.381 0.00 0.00 0.00 3.86
2923 4182 1.072965 GGCTACCAGATCAATCCCCAG 59.927 57.143 0.00 0.00 0.00 4.45
2924 4183 1.140312 GGCTACCAGATCAATCCCCA 58.860 55.000 0.00 0.00 0.00 4.96
2925 4184 1.072965 CAGGCTACCAGATCAATCCCC 59.927 57.143 0.00 0.00 0.00 4.81
2926 4185 2.050144 TCAGGCTACCAGATCAATCCC 58.950 52.381 0.00 0.00 0.00 3.85
2927 4186 3.845781 TTCAGGCTACCAGATCAATCC 57.154 47.619 0.00 0.00 0.00 3.01
2928 4187 4.133078 CCTTTCAGGCTACCAGATCAATC 58.867 47.826 0.00 0.00 0.00 2.67
2929 4188 3.117738 CCCTTTCAGGCTACCAGATCAAT 60.118 47.826 0.00 0.00 32.73 2.57
2930 4189 2.239654 CCCTTTCAGGCTACCAGATCAA 59.760 50.000 0.00 0.00 32.73 2.57
2931 4190 1.839994 CCCTTTCAGGCTACCAGATCA 59.160 52.381 0.00 0.00 32.73 2.92
2932 4191 2.629336 CCCTTTCAGGCTACCAGATC 57.371 55.000 0.00 0.00 32.73 2.75
2942 4201 0.250901 CCCGATATGGCCCTTTCAGG 60.251 60.000 0.00 1.64 35.87 3.86
2943 4202 0.764890 TCCCGATATGGCCCTTTCAG 59.235 55.000 0.00 0.00 35.87 3.02
2944 4203 1.351017 GATCCCGATATGGCCCTTTCA 59.649 52.381 0.00 0.00 35.87 2.69
2945 4204 1.351017 TGATCCCGATATGGCCCTTTC 59.649 52.381 0.00 0.00 35.87 2.62
2946 4205 1.352352 CTGATCCCGATATGGCCCTTT 59.648 52.381 0.00 0.00 35.87 3.11
2947 4206 0.987294 CTGATCCCGATATGGCCCTT 59.013 55.000 0.00 0.00 35.87 3.95
2948 4207 1.557269 GCTGATCCCGATATGGCCCT 61.557 60.000 0.00 0.00 35.87 5.19
2949 4208 1.078143 GCTGATCCCGATATGGCCC 60.078 63.158 0.00 0.00 35.87 5.80
2950 4209 1.448540 CGCTGATCCCGATATGGCC 60.449 63.158 0.00 0.00 35.87 5.36
2951 4210 0.176680 ATCGCTGATCCCGATATGGC 59.823 55.000 14.42 0.00 42.98 4.40
2952 4211 1.472201 CCATCGCTGATCCCGATATGG 60.472 57.143 15.28 12.29 42.93 2.74
2953 4212 1.472201 CCCATCGCTGATCCCGATATG 60.472 57.143 15.28 10.79 42.93 1.78
2954 4213 0.826715 CCCATCGCTGATCCCGATAT 59.173 55.000 15.28 0.00 42.93 1.63
2955 4214 1.257750 CCCCATCGCTGATCCCGATA 61.258 60.000 15.28 0.00 42.93 2.92
2956 4215 2.587247 CCCCATCGCTGATCCCGAT 61.587 63.158 11.29 11.29 45.41 4.18
2957 4216 3.233980 CCCCATCGCTGATCCCGA 61.234 66.667 7.84 7.84 39.24 5.14
2958 4217 4.320456 CCCCCATCGCTGATCCCG 62.320 72.222 0.00 0.00 0.00 5.14
2959 4218 1.994885 TTTCCCCCATCGCTGATCCC 61.995 60.000 0.00 0.00 0.00 3.85
2960 4219 0.536006 CTTTCCCCCATCGCTGATCC 60.536 60.000 0.00 0.00 0.00 3.36
2961 4220 1.169034 GCTTTCCCCCATCGCTGATC 61.169 60.000 0.00 0.00 0.00 2.92
2962 4221 1.152881 GCTTTCCCCCATCGCTGAT 60.153 57.895 0.00 0.00 0.00 2.90
2963 4222 2.272146 GCTTTCCCCCATCGCTGA 59.728 61.111 0.00 0.00 0.00 4.26
2964 4223 2.830370 GGCTTTCCCCCATCGCTG 60.830 66.667 0.00 0.00 0.00 5.18
2965 4224 4.489771 CGGCTTTCCCCCATCGCT 62.490 66.667 0.00 0.00 0.00 4.93
2967 4226 4.794648 TGCGGCTTTCCCCCATCG 62.795 66.667 0.00 0.00 0.00 3.84
2968 4227 2.123726 ATGCGGCTTTCCCCCATC 60.124 61.111 0.00 0.00 0.00 3.51
2969 4228 2.123726 GATGCGGCTTTCCCCCAT 60.124 61.111 0.00 0.00 0.00 4.00
2970 4229 3.656280 TGATGCGGCTTTCCCCCA 61.656 61.111 0.00 0.00 0.00 4.96
2971 4230 3.140814 GTGATGCGGCTTTCCCCC 61.141 66.667 0.00 0.00 0.00 5.40
2972 4231 3.508840 CGTGATGCGGCTTTCCCC 61.509 66.667 0.00 0.00 36.85 4.81
2981 4240 3.554692 GCCTCGTTCCGTGATGCG 61.555 66.667 0.00 0.00 40.95 4.73
2982 4241 3.195698 GGCCTCGTTCCGTGATGC 61.196 66.667 0.00 0.00 0.00 3.91
2983 4242 1.811266 CTGGCCTCGTTCCGTGATG 60.811 63.158 3.32 0.00 0.00 3.07
2984 4243 1.949847 CTCTGGCCTCGTTCCGTGAT 61.950 60.000 3.32 0.00 0.00 3.06
2985 4244 2.599281 TCTGGCCTCGTTCCGTGA 60.599 61.111 3.32 0.00 0.00 4.35
2986 4245 1.949847 ATCTCTGGCCTCGTTCCGTG 61.950 60.000 3.32 0.00 0.00 4.94
2987 4246 1.668101 GATCTCTGGCCTCGTTCCGT 61.668 60.000 3.32 0.00 0.00 4.69
2988 4247 1.066587 GATCTCTGGCCTCGTTCCG 59.933 63.158 3.32 0.00 0.00 4.30
2989 4248 1.443828 GGATCTCTGGCCTCGTTCC 59.556 63.158 3.32 2.68 0.00 3.62
2990 4249 1.066587 CGGATCTCTGGCCTCGTTC 59.933 63.158 3.32 0.00 0.00 3.95
2991 4250 1.379977 TCGGATCTCTGGCCTCGTT 60.380 57.895 3.32 0.00 0.00 3.85
2992 4251 1.826054 CTCGGATCTCTGGCCTCGT 60.826 63.158 3.32 0.00 0.00 4.18
2993 4252 3.038280 CTCGGATCTCTGGCCTCG 58.962 66.667 3.32 0.00 0.00 4.63
2994 4253 2.086251 CTGCTCGGATCTCTGGCCTC 62.086 65.000 3.32 0.00 0.00 4.70
2995 4254 2.042537 TGCTCGGATCTCTGGCCT 60.043 61.111 3.32 0.00 0.00 5.19
2996 4255 2.420890 CTGCTCGGATCTCTGGCC 59.579 66.667 0.00 0.00 0.00 5.36
2997 4256 2.280052 GCTGCTCGGATCTCTGGC 60.280 66.667 0.00 0.00 0.00 4.85
2998 4257 2.009424 TTCGCTGCTCGGATCTCTGG 62.009 60.000 0.00 0.00 39.05 3.86
2999 4258 0.594540 CTTCGCTGCTCGGATCTCTG 60.595 60.000 0.00 0.00 39.05 3.35
3000 4259 1.732917 CTTCGCTGCTCGGATCTCT 59.267 57.895 0.00 0.00 39.05 3.10
3001 4260 1.948635 GCTTCGCTGCTCGGATCTC 60.949 63.158 0.00 0.00 39.05 2.75
3002 4261 2.105930 GCTTCGCTGCTCGGATCT 59.894 61.111 0.00 0.00 39.05 2.75
3003 4262 3.326210 CGCTTCGCTGCTCGGATC 61.326 66.667 0.00 0.00 39.05 3.36
3047 4306 3.322466 AGGTTGCCCCTCTGGTCG 61.322 66.667 0.00 0.00 40.71 4.79
3048 4307 2.352805 CAGGTTGCCCCTCTGGTC 59.647 66.667 0.00 0.00 43.86 4.02
3049 4308 3.971702 GCAGGTTGCCCCTCTGGT 61.972 66.667 0.00 0.00 43.86 4.00
3050 4309 3.292481 ATGCAGGTTGCCCCTCTGG 62.292 63.158 0.00 0.00 43.86 3.86
3051 4310 2.050350 CATGCAGGTTGCCCCTCTG 61.050 63.158 0.00 0.00 43.86 3.35
3052 4311 2.357836 CATGCAGGTTGCCCCTCT 59.642 61.111 0.00 0.00 43.86 3.69
3053 4312 3.455469 GCATGCAGGTTGCCCCTC 61.455 66.667 14.21 0.00 43.86 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.