Multiple sequence alignment - TraesCS3A01G259700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G259700 chr3A 100.000 8692 0 0 665 9356 482060474 482069165 0.000000e+00 16052.0
1 TraesCS3A01G259700 chr3A 91.930 1772 70 29 7474 9195 673460721 673462469 0.000000e+00 2412.0
2 TraesCS3A01G259700 chr3A 87.810 1813 120 46 5716 7451 84664917 84663129 0.000000e+00 2030.0
3 TraesCS3A01G259700 chr3A 88.058 1164 74 34 5721 6841 673448914 673450055 0.000000e+00 1319.0
4 TraesCS3A01G259700 chr3A 91.132 733 44 15 4492 5215 391252344 391253064 0.000000e+00 974.0
5 TraesCS3A01G259700 chr3A 91.120 732 43 13 4492 5215 391274987 391275704 0.000000e+00 972.0
6 TraesCS3A01G259700 chr3A 89.510 734 55 13 4492 5218 552891719 552891001 0.000000e+00 909.0
7 TraesCS3A01G259700 chr3A 90.084 595 27 9 8636 9198 749194054 749193460 0.000000e+00 743.0
8 TraesCS3A01G259700 chr3A 100.000 345 0 0 1 345 482059810 482060154 1.020000e-178 638.0
9 TraesCS3A01G259700 chr3A 96.330 109 4 0 3320 3428 91478229 91478337 7.460000e-41 180.0
10 TraesCS3A01G259700 chr3A 97.727 44 1 0 1317 1360 23253906 23253863 1.010000e-09 76.8
11 TraesCS3A01G259700 chr3D 96.879 2627 78 2 698 3322 361737255 361739879 0.000000e+00 4394.0
12 TraesCS3A01G259700 chr3D 92.865 911 36 16 5835 6719 23220923 23221830 0.000000e+00 1295.0
13 TraesCS3A01G259700 chr3D 95.132 493 18 6 3420 3909 361739872 361740361 0.000000e+00 773.0
14 TraesCS3A01G259700 chr3D 90.361 332 21 8 5230 5552 361747785 361748114 8.680000e-115 425.0
15 TraesCS3A01G259700 chr3D 90.942 276 12 8 3971 4238 361740337 361740607 8.930000e-95 359.0
16 TraesCS3A01G259700 chr3D 88.115 244 17 8 112 345 361736446 361736687 7.150000e-71 279.0
17 TraesCS3A01G259700 chr3D 94.040 151 8 1 5552 5701 361748407 361748557 2.630000e-55 228.0
18 TraesCS3A01G259700 chr3D 93.519 108 2 2 4370 4477 361740608 361740710 1.260000e-33 156.0
19 TraesCS3A01G259700 chr3D 85.333 150 17 2 4247 4393 431235920 431236067 5.850000e-32 150.0
20 TraesCS3A01G259700 chr3B 96.756 1973 55 3 665 2628 471474923 471476895 0.000000e+00 3280.0
21 TraesCS3A01G259700 chr3B 91.783 1789 75 40 7474 9256 452750851 452752573 0.000000e+00 2423.0
22 TraesCS3A01G259700 chr3B 88.708 1780 112 43 5721 7451 452747820 452749559 0.000000e+00 2091.0
23 TraesCS3A01G259700 chr3B 88.081 1787 123 41 5714 7451 605675442 605673697 0.000000e+00 2037.0
24 TraesCS3A01G259700 chr3B 95.218 711 25 4 2619 3322 471477079 471477787 0.000000e+00 1116.0
25 TraesCS3A01G259700 chr3B 94.536 366 12 6 3420 3779 471477780 471478143 8.210000e-155 558.0
26 TraesCS3A01G259700 chr3B 96.457 254 7 2 93 345 471474583 471474835 1.450000e-112 418.0
27 TraesCS3A01G259700 chr3B 93.443 244 11 3 4238 4477 471480002 471480244 3.210000e-94 357.0
28 TraesCS3A01G259700 chr3B 88.646 229 9 7 3971 4199 471478302 471478513 7.210000e-66 263.0
29 TraesCS3A01G259700 chr3B 91.538 130 7 4 5599 5727 471481673 471481799 9.660000e-40 176.0
30 TraesCS3A01G259700 chr3B 89.011 91 7 3 3820 3909 471478238 471478326 9.930000e-20 110.0
31 TraesCS3A01G259700 chr3B 97.917 48 1 0 4207 4254 471479943 471479990 6.020000e-12 84.2
32 TraesCS3A01G259700 chr6A 91.727 1801 84 37 7474 9256 71532547 71534300 0.000000e+00 2440.0
33 TraesCS3A01G259700 chr6A 91.844 1790 73 41 7474 9256 101907958 101906235 0.000000e+00 2429.0
34 TraesCS3A01G259700 chr6A 88.386 1791 119 44 5710 7451 101911000 101909250 0.000000e+00 2073.0
35 TraesCS3A01G259700 chr6A 86.712 1174 73 50 5716 6848 71531143 71532274 0.000000e+00 1227.0
36 TraesCS3A01G259700 chr6A 95.862 725 25 4 4492 5215 87056736 87056016 0.000000e+00 1168.0
37 TraesCS3A01G259700 chr6A 91.304 736 39 19 4492 5219 171799595 171798877 0.000000e+00 981.0
38 TraesCS3A01G259700 chr6A 87.924 737 63 17 4492 5215 82102548 82101825 0.000000e+00 845.0
39 TraesCS3A01G259700 chr6A 88.298 94 4 1 1 94 7087237 7087323 1.280000e-18 106.0
40 TraesCS3A01G259700 chr6B 91.895 1789 73 36 7474 9256 96332863 96334585 0.000000e+00 2435.0
41 TraesCS3A01G259700 chr6B 87.984 1781 123 42 5720 7451 96329833 96331571 0.000000e+00 2019.0
42 TraesCS3A01G259700 chr6B 90.120 415 30 7 8472 8882 549023409 549023816 6.430000e-146 529.0
43 TraesCS3A01G259700 chrUn 91.783 1789 75 40 7474 9256 295240231 295238509 0.000000e+00 2423.0
44 TraesCS3A01G259700 chrUn 89.645 1043 54 18 6453 7451 295242555 295241523 0.000000e+00 1279.0
45 TraesCS3A01G259700 chr5B 91.783 1789 75 40 7474 9256 271131949 271130227 0.000000e+00 2423.0
46 TraesCS3A01G259700 chr5B 91.727 1789 75 41 7474 9256 271128120 271126399 0.000000e+00 2416.0
47 TraesCS3A01G259700 chr5B 88.745 1777 108 39 5720 7451 271134970 271133241 0.000000e+00 2089.0
48 TraesCS3A01G259700 chr5B 95.652 115 2 2 9245 9356 36019398 36019512 2.080000e-41 182.0
49 TraesCS3A01G259700 chr5B 95.614 114 3 2 9245 9356 165420932 165421045 2.080000e-41 182.0
50 TraesCS3A01G259700 chr5B 95.614 114 3 2 9245 9356 165819669 165819782 2.080000e-41 182.0
51 TraesCS3A01G259700 chr5B 92.623 122 7 2 3308 3427 51836796 51836917 3.470000e-39 174.0
52 TraesCS3A01G259700 chr5B 90.323 93 9 0 1 93 559188186 559188278 1.280000e-23 122.0
53 TraesCS3A01G259700 chr7B 91.671 1789 77 40 7474 9256 718885838 718884116 0.000000e+00 2412.0
54 TraesCS3A01G259700 chr7B 91.504 1789 79 41 7474 9256 750075217 750076938 0.000000e+00 2394.0
55 TraesCS3A01G259700 chr7B 88.483 1780 115 42 5721 7451 718888868 718887130 0.000000e+00 2069.0
56 TraesCS3A01G259700 chr7B 88.090 1780 122 46 5722 7451 750072186 750073925 0.000000e+00 2030.0
57 TraesCS3A01G259700 chr7B 82.225 827 93 35 8472 9256 69954649 69955463 0.000000e+00 664.0
58 TraesCS3A01G259700 chr7B 85.692 643 50 13 8288 8921 70025790 70026399 2.850000e-179 640.0
59 TraesCS3A01G259700 chr7B 84.950 598 46 15 8288 8882 70043350 70043906 4.900000e-157 566.0
60 TraesCS3A01G259700 chr7B 87.364 459 39 13 8472 8921 69906971 69907419 8.380000e-140 508.0
61 TraesCS3A01G259700 chr7B 96.429 112 2 2 9247 9356 131355520 131355409 5.770000e-42 183.0
62 TraesCS3A01G259700 chr7B 94.624 93 5 0 1 93 241111766 241111858 2.720000e-30 145.0
63 TraesCS3A01G259700 chr7B 93.333 60 3 1 1306 1365 597149599 597149541 4.650000e-13 87.9
64 TraesCS3A01G259700 chr5A 92.149 1745 71 24 7474 9195 510263595 510265296 0.000000e+00 2403.0
65 TraesCS3A01G259700 chr5A 95.065 1378 46 11 7474 8848 618278527 618279885 0.000000e+00 2148.0
66 TraesCS3A01G259700 chr5A 88.440 1808 112 39 5721 7451 510260519 510262306 0.000000e+00 2091.0
67 TraesCS3A01G259700 chr5A 88.549 1799 106 41 5721 7451 535686236 535684470 0.000000e+00 2089.0
68 TraesCS3A01G259700 chr5A 97.111 727 17 4 4492 5215 354537726 354538451 0.000000e+00 1223.0
69 TraesCS3A01G259700 chr5A 92.308 728 38 13 4492 5215 590383479 590384192 0.000000e+00 1018.0
70 TraesCS3A01G259700 chr5A 98.095 105 2 0 3323 3427 537119782 537119678 5.770000e-42 183.0
71 TraesCS3A01G259700 chr5A 95.699 93 4 0 1 93 304916050 304915958 5.850000e-32 150.0
72 TraesCS3A01G259700 chr7A 89.770 1779 104 38 5720 7451 689960498 689958751 0.000000e+00 2206.0
73 TraesCS3A01G259700 chr7A 88.429 1789 117 43 5712 7451 37854380 37856127 0.000000e+00 2074.0
74 TraesCS3A01G259700 chr7A 91.749 303 20 5 8957 9255 37858822 37859123 5.230000e-112 416.0
75 TraesCS3A01G259700 chr7A 100.000 108 0 0 3320 3427 538102635 538102528 5.730000e-47 200.0
76 TraesCS3A01G259700 chr7A 96.330 109 4 0 3320 3428 638698968 638699076 7.460000e-41 180.0
77 TraesCS3A01G259700 chr7A 89.888 89 9 0 4 92 28002438 28002350 2.130000e-21 115.0
78 TraesCS3A01G259700 chr7A 94.828 58 3 0 1400 1457 315275882 315275939 3.600000e-14 91.6
79 TraesCS3A01G259700 chr7A 92.857 56 3 1 1306 1361 315275624 315275678 7.790000e-11 80.5
80 TraesCS3A01G259700 chr1A 89.314 1778 112 27 5721 7451 286244906 286246652 0.000000e+00 2159.0
81 TraesCS3A01G259700 chr1A 89.232 1783 113 39 5716 7451 287785538 287787288 0.000000e+00 2156.0
82 TraesCS3A01G259700 chr1A 83.278 1507 240 12 734 2234 548674285 548675785 0.000000e+00 1376.0
83 TraesCS3A01G259700 chr1A 96.460 113 4 0 3320 3432 427816356 427816468 4.460000e-43 187.0
84 TraesCS3A01G259700 chr1A 86.000 150 14 3 4248 4393 155857706 155857852 4.520000e-33 154.0
85 TraesCS3A01G259700 chr1A 97.436 39 1 0 1373 1411 549593027 549593065 6.060000e-07 67.6
86 TraesCS3A01G259700 chr2B 94.920 1378 48 11 7474 8848 531103850 531105208 0.000000e+00 2137.0
87 TraesCS3A01G259700 chr2B 88.464 1803 108 36 5716 7450 54335892 54337662 0.000000e+00 2085.0
88 TraesCS3A01G259700 chr2B 93.224 1402 59 18 7474 8862 54338955 54340333 0.000000e+00 2030.0
89 TraesCS3A01G259700 chr2B 88.034 1780 123 41 5721 7451 520682888 520684626 0.000000e+00 2025.0
90 TraesCS3A01G259700 chr2B 97.248 109 3 0 9248 9356 126699725 126699833 1.600000e-42 185.0
91 TraesCS3A01G259700 chr2B 98.113 106 2 0 9251 9356 712490877 712490772 1.600000e-42 185.0
92 TraesCS3A01G259700 chr2B 92.742 124 6 3 9235 9356 126450795 126450917 9.660000e-40 176.0
93 TraesCS3A01G259700 chr1B 88.444 1800 109 40 5720 7451 365465217 365463449 0.000000e+00 2080.0
94 TraesCS3A01G259700 chr1B 88.327 1799 111 34 5721 7451 111684526 111682759 0.000000e+00 2067.0
95 TraesCS3A01G259700 chr1B 88.258 1780 119 36 5721 7451 648665013 648666751 0.000000e+00 2047.0
96 TraesCS3A01G259700 chr1B 83.774 1436 228 4 804 2235 624885360 624886794 0.000000e+00 1356.0
97 TraesCS3A01G259700 chr1B 98.113 106 2 0 3323 3428 610352212 610352107 1.600000e-42 185.0
98 TraesCS3A01G259700 chr1B 96.262 107 3 1 9251 9356 641355512 641355406 3.470000e-39 174.0
99 TraesCS3A01G259700 chr1B 85.235 149 14 4 4248 4392 424083915 424083771 7.570000e-31 147.0
100 TraesCS3A01G259700 chr4A 88.552 1782 113 42 5720 7451 135353565 135351825 0.000000e+00 2076.0
101 TraesCS3A01G259700 chr4A 87.009 739 66 21 4492 5215 679188507 679187784 0.000000e+00 806.0
102 TraesCS3A01G259700 chr4A 86.111 72 9 1 22 93 197617497 197617427 1.010000e-09 76.8
103 TraesCS3A01G259700 chr1D 82.683 1513 231 22 737 2235 454565069 454563574 0.000000e+00 1314.0
104 TraesCS3A01G259700 chr1D 94.828 116 3 3 9241 9356 45322780 45322668 2.680000e-40 178.0
105 TraesCS3A01G259700 chr1D 85.333 150 15 4 4248 4393 314013689 314013543 2.100000e-31 148.0
106 TraesCS3A01G259700 chr6D 97.248 109 3 0 3319 3427 79857212 79857104 1.600000e-42 185.0
107 TraesCS3A01G259700 chr6D 85.430 151 15 5 4248 4393 418157660 418157512 5.850000e-32 150.0
108 TraesCS3A01G259700 chr6D 84.564 149 17 2 4248 4393 256728450 256728595 9.790000e-30 143.0
109 TraesCS3A01G259700 chr7D 94.737 114 5 1 3319 3432 185178164 185178052 9.660000e-40 176.0
110 TraesCS3A01G259700 chr7D 89.691 97 9 1 1 97 101771729 101771824 1.280000e-23 122.0
111 TraesCS3A01G259700 chr7D 93.421 76 5 0 18 93 553810205 553810280 7.680000e-21 113.0
112 TraesCS3A01G259700 chr2A 87.838 148 10 3 4248 4391 141506470 141506327 5.810000e-37 167.0
113 TraesCS3A01G259700 chr4B 87.324 142 10 3 4247 4384 106227408 106227545 1.260000e-33 156.0
114 TraesCS3A01G259700 chr4B 88.776 98 11 0 1 98 654074647 654074744 4.590000e-23 121.0
115 TraesCS3A01G259700 chr5D 92.105 76 6 0 18 93 433475745 433475820 3.570000e-19 108.0
116 TraesCS3A01G259700 chr2D 93.333 60 3 1 1306 1365 645836907 645836965 4.650000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G259700 chr3A 482059810 482069165 9355 False 8345.000000 16052 100.000000 1 9356 2 chr3A.!!$F6 9355
1 TraesCS3A01G259700 chr3A 673460721 673462469 1748 False 2412.000000 2412 91.930000 7474 9195 1 chr3A.!!$F5 1721
2 TraesCS3A01G259700 chr3A 84663129 84664917 1788 True 2030.000000 2030 87.810000 5716 7451 1 chr3A.!!$R2 1735
3 TraesCS3A01G259700 chr3A 673448914 673450055 1141 False 1319.000000 1319 88.058000 5721 6841 1 chr3A.!!$F4 1120
4 TraesCS3A01G259700 chr3A 391252344 391253064 720 False 974.000000 974 91.132000 4492 5215 1 chr3A.!!$F2 723
5 TraesCS3A01G259700 chr3A 391274987 391275704 717 False 972.000000 972 91.120000 4492 5215 1 chr3A.!!$F3 723
6 TraesCS3A01G259700 chr3A 552891001 552891719 718 True 909.000000 909 89.510000 4492 5218 1 chr3A.!!$R3 726
7 TraesCS3A01G259700 chr3A 749193460 749194054 594 True 743.000000 743 90.084000 8636 9198 1 chr3A.!!$R4 562
8 TraesCS3A01G259700 chr3D 23220923 23221830 907 False 1295.000000 1295 92.865000 5835 6719 1 chr3D.!!$F1 884
9 TraesCS3A01G259700 chr3D 361736446 361740710 4264 False 1192.200000 4394 92.917400 112 4477 5 chr3D.!!$F3 4365
10 TraesCS3A01G259700 chr3D 361747785 361748557 772 False 326.500000 425 92.200500 5230 5701 2 chr3D.!!$F4 471
11 TraesCS3A01G259700 chr3B 452747820 452752573 4753 False 2257.000000 2423 90.245500 5721 9256 2 chr3B.!!$F1 3535
12 TraesCS3A01G259700 chr3B 605673697 605675442 1745 True 2037.000000 2037 88.081000 5714 7451 1 chr3B.!!$R1 1737
13 TraesCS3A01G259700 chr3B 471474583 471481799 7216 False 706.911111 3280 93.724667 93 5727 9 chr3B.!!$F2 5634
14 TraesCS3A01G259700 chr6A 101906235 101911000 4765 True 2251.000000 2429 90.115000 5710 9256 2 chr6A.!!$R4 3546
15 TraesCS3A01G259700 chr6A 71531143 71534300 3157 False 1833.500000 2440 89.219500 5716 9256 2 chr6A.!!$F2 3540
16 TraesCS3A01G259700 chr6A 87056016 87056736 720 True 1168.000000 1168 95.862000 4492 5215 1 chr6A.!!$R2 723
17 TraesCS3A01G259700 chr6A 171798877 171799595 718 True 981.000000 981 91.304000 4492 5219 1 chr6A.!!$R3 727
18 TraesCS3A01G259700 chr6A 82101825 82102548 723 True 845.000000 845 87.924000 4492 5215 1 chr6A.!!$R1 723
19 TraesCS3A01G259700 chr6B 96329833 96334585 4752 False 2227.000000 2435 89.939500 5720 9256 2 chr6B.!!$F2 3536
20 TraesCS3A01G259700 chrUn 295238509 295242555 4046 True 1851.000000 2423 90.714000 6453 9256 2 chrUn.!!$R1 2803
21 TraesCS3A01G259700 chr5B 271126399 271134970 8571 True 2309.333333 2423 90.751667 5720 9256 3 chr5B.!!$R1 3536
22 TraesCS3A01G259700 chr7B 718884116 718888868 4752 True 2240.500000 2412 90.077000 5721 9256 2 chr7B.!!$R3 3535
23 TraesCS3A01G259700 chr7B 750072186 750076938 4752 False 2212.000000 2394 89.797000 5722 9256 2 chr7B.!!$F6 3534
24 TraesCS3A01G259700 chr7B 69954649 69955463 814 False 664.000000 664 82.225000 8472 9256 1 chr7B.!!$F2 784
25 TraesCS3A01G259700 chr7B 70025790 70026399 609 False 640.000000 640 85.692000 8288 8921 1 chr7B.!!$F3 633
26 TraesCS3A01G259700 chr7B 70043350 70043906 556 False 566.000000 566 84.950000 8288 8882 1 chr7B.!!$F4 594
27 TraesCS3A01G259700 chr5A 510260519 510265296 4777 False 2247.000000 2403 90.294500 5721 9195 2 chr5A.!!$F4 3474
28 TraesCS3A01G259700 chr5A 618278527 618279885 1358 False 2148.000000 2148 95.065000 7474 8848 1 chr5A.!!$F3 1374
29 TraesCS3A01G259700 chr5A 535684470 535686236 1766 True 2089.000000 2089 88.549000 5721 7451 1 chr5A.!!$R2 1730
30 TraesCS3A01G259700 chr5A 354537726 354538451 725 False 1223.000000 1223 97.111000 4492 5215 1 chr5A.!!$F1 723
31 TraesCS3A01G259700 chr5A 590383479 590384192 713 False 1018.000000 1018 92.308000 4492 5215 1 chr5A.!!$F2 723
32 TraesCS3A01G259700 chr7A 689958751 689960498 1747 True 2206.000000 2206 89.770000 5720 7451 1 chr7A.!!$R3 1731
33 TraesCS3A01G259700 chr7A 37854380 37859123 4743 False 1245.000000 2074 90.089000 5712 9255 2 chr7A.!!$F2 3543
34 TraesCS3A01G259700 chr1A 286244906 286246652 1746 False 2159.000000 2159 89.314000 5721 7451 1 chr1A.!!$F2 1730
35 TraesCS3A01G259700 chr1A 287785538 287787288 1750 False 2156.000000 2156 89.232000 5716 7451 1 chr1A.!!$F3 1735
36 TraesCS3A01G259700 chr1A 548674285 548675785 1500 False 1376.000000 1376 83.278000 734 2234 1 chr1A.!!$F5 1500
37 TraesCS3A01G259700 chr2B 531103850 531105208 1358 False 2137.000000 2137 94.920000 7474 8848 1 chr2B.!!$F4 1374
38 TraesCS3A01G259700 chr2B 54335892 54340333 4441 False 2057.500000 2085 90.844000 5716 8862 2 chr2B.!!$F5 3146
39 TraesCS3A01G259700 chr2B 520682888 520684626 1738 False 2025.000000 2025 88.034000 5721 7451 1 chr2B.!!$F3 1730
40 TraesCS3A01G259700 chr1B 365463449 365465217 1768 True 2080.000000 2080 88.444000 5720 7451 1 chr1B.!!$R2 1731
41 TraesCS3A01G259700 chr1B 111682759 111684526 1767 True 2067.000000 2067 88.327000 5721 7451 1 chr1B.!!$R1 1730
42 TraesCS3A01G259700 chr1B 648665013 648666751 1738 False 2047.000000 2047 88.258000 5721 7451 1 chr1B.!!$F2 1730
43 TraesCS3A01G259700 chr1B 624885360 624886794 1434 False 1356.000000 1356 83.774000 804 2235 1 chr1B.!!$F1 1431
44 TraesCS3A01G259700 chr4A 135351825 135353565 1740 True 2076.000000 2076 88.552000 5720 7451 1 chr4A.!!$R1 1731
45 TraesCS3A01G259700 chr4A 679187784 679188507 723 True 806.000000 806 87.009000 4492 5215 1 chr4A.!!$R3 723
46 TraesCS3A01G259700 chr1D 454563574 454565069 1495 True 1314.000000 1314 82.683000 737 2235 1 chr1D.!!$R3 1498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.608035 GGCACGGGATCAAGTTTCCA 60.608 55.000 0.00 0.00 34.77 3.53 F
693 703 0.814457 CACTCTCCCTCCTCTTCACG 59.186 60.000 0.00 0.00 0.00 4.35 F
1743 2225 0.241749 TAGTTGATCGCGTTCCACGT 59.758 50.000 14.25 6.64 44.73 4.49 F
1809 2291 1.734655 ACAAGTCTGGGTGGACTGAT 58.265 50.000 0.00 0.00 44.67 2.90 F
2768 3443 0.395586 TGTTCCAGTGGCAGCAAGTT 60.396 50.000 3.51 0.00 0.00 2.66 F
3837 4579 0.108520 CAACAATGCATGCCTGGTCC 60.109 55.000 16.68 0.00 0.00 4.46 F
3910 4653 0.179073 ACACGCTAGCCATGGATGTC 60.179 55.000 18.40 4.45 0.00 3.06 F
3911 4654 0.179076 CACGCTAGCCATGGATGTCA 60.179 55.000 18.40 0.00 0.00 3.58 F
3912 4655 0.761187 ACGCTAGCCATGGATGTCAT 59.239 50.000 18.40 0.00 36.31 3.06 F
4640 6838 1.079197 AATCAGCATGCCACGTCGA 60.079 52.632 15.66 1.97 34.76 4.20 F
5996 9642 1.191489 TGTGCCTCGACCAATCTCCA 61.191 55.000 0.00 0.00 0.00 3.86 F
7058 10777 0.982704 ACATCTTCAGGTGCAGCTCT 59.017 50.000 17.16 0.00 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 2225 0.673333 CGGCCTGTGCACATACAAGA 60.673 55.000 22.00 0.00 40.13 3.02 R
1956 2438 1.673665 CCCAGTGAGGTCAGCAAGC 60.674 63.158 0.00 0.00 34.66 4.01 R
2747 3422 0.746063 CTTGCTGCCACTGGAACAAA 59.254 50.000 0.00 0.00 38.70 2.83 R
3800 4522 0.392461 TGCCAAATCTACCCGCACTC 60.392 55.000 0.00 0.00 0.00 3.51 R
3891 4634 0.179073 GACATCCATGGCTAGCGTGT 60.179 55.000 6.96 6.44 31.49 4.49 R
5610 9253 0.383231 CCGAGTATGGTGACGGGTAC 59.617 60.000 0.00 0.00 41.41 3.34 R
5798 9443 1.810755 CGGTTTTGGAGAGTTTAGGGC 59.189 52.381 0.00 0.00 0.00 5.19 R
5869 9514 2.563179 GTCCAGTCAGCAAGGAGACTAA 59.437 50.000 0.00 0.00 42.87 2.24 R
5915 9561 1.678101 GCTCCCCCAATCGATGAAAAG 59.322 52.381 0.00 0.00 0.00 2.27 R
6086 9761 0.336737 AGTACAGCTACTGGAGGCCT 59.663 55.000 3.86 3.86 35.51 5.19 R
7060 10779 0.038892 GCACATGCACTTGGAGTTGG 60.039 55.000 0.00 0.00 41.59 3.77 R
9016 18025 0.454600 GGAGACTTACATCCGCGTCA 59.545 55.000 4.92 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.807118 TCATCTCATAATGTACACTCCTTATCC 58.193 37.037 0.00 0.00 0.00 2.59
30 31 8.588472 CATCTCATAATGTACACTCCTTATCCA 58.412 37.037 0.00 0.00 0.00 3.41
31 32 8.547481 TCTCATAATGTACACTCCTTATCCAA 57.453 34.615 0.00 0.00 0.00 3.53
32 33 8.421784 TCTCATAATGTACACTCCTTATCCAAC 58.578 37.037 0.00 0.00 0.00 3.77
33 34 7.207383 TCATAATGTACACTCCTTATCCAACG 58.793 38.462 0.00 0.00 0.00 4.10
34 35 3.880047 TGTACACTCCTTATCCAACGG 57.120 47.619 0.00 0.00 0.00 4.44
35 36 2.093869 TGTACACTCCTTATCCAACGGC 60.094 50.000 0.00 0.00 0.00 5.68
36 37 0.981183 ACACTCCTTATCCAACGGCA 59.019 50.000 0.00 0.00 0.00 5.69
37 38 1.338769 ACACTCCTTATCCAACGGCAC 60.339 52.381 0.00 0.00 0.00 5.01
51 52 2.180674 GGCACGGGATCAAGTTTCC 58.819 57.895 0.00 0.00 0.00 3.13
52 53 0.608035 GGCACGGGATCAAGTTTCCA 60.608 55.000 0.00 0.00 34.77 3.53
53 54 1.463674 GCACGGGATCAAGTTTCCAT 58.536 50.000 0.00 0.00 34.77 3.41
54 55 1.133025 GCACGGGATCAAGTTTCCATG 59.867 52.381 0.00 0.00 34.77 3.66
55 56 1.133025 CACGGGATCAAGTTTCCATGC 59.867 52.381 0.00 0.00 34.77 4.06
56 57 1.004745 ACGGGATCAAGTTTCCATGCT 59.995 47.619 0.00 0.00 34.77 3.79
57 58 2.094675 CGGGATCAAGTTTCCATGCTT 58.905 47.619 0.00 0.00 34.77 3.91
58 59 2.493278 CGGGATCAAGTTTCCATGCTTT 59.507 45.455 0.00 0.00 34.77 3.51
59 60 3.428045 CGGGATCAAGTTTCCATGCTTTC 60.428 47.826 0.00 0.00 34.77 2.62
60 61 3.511146 GGGATCAAGTTTCCATGCTTTCA 59.489 43.478 0.00 0.00 34.77 2.69
61 62 4.161001 GGGATCAAGTTTCCATGCTTTCAT 59.839 41.667 0.00 0.00 34.77 2.57
62 63 5.337813 GGGATCAAGTTTCCATGCTTTCATT 60.338 40.000 0.00 0.00 34.77 2.57
63 64 5.579511 GGATCAAGTTTCCATGCTTTCATTG 59.420 40.000 0.00 0.00 33.21 2.82
64 65 5.787953 TCAAGTTTCCATGCTTTCATTGA 57.212 34.783 0.00 0.00 0.00 2.57
65 66 6.159299 TCAAGTTTCCATGCTTTCATTGAA 57.841 33.333 0.00 0.00 33.95 2.69
66 67 6.761312 TCAAGTTTCCATGCTTTCATTGAAT 58.239 32.000 0.00 0.00 35.23 2.57
67 68 7.894708 TCAAGTTTCCATGCTTTCATTGAATA 58.105 30.769 0.00 0.00 35.23 1.75
68 69 8.533657 TCAAGTTTCCATGCTTTCATTGAATAT 58.466 29.630 0.00 0.00 35.23 1.28
69 70 9.806203 CAAGTTTCCATGCTTTCATTGAATATA 57.194 29.630 0.00 0.00 35.23 0.86
71 72 9.976511 AGTTTCCATGCTTTCATTGAATATATG 57.023 29.630 0.00 5.39 35.23 1.78
72 73 9.199982 GTTTCCATGCTTTCATTGAATATATGG 57.800 33.333 19.81 19.81 35.23 2.74
73 74 8.481492 TTCCATGCTTTCATTGAATATATGGT 57.519 30.769 22.34 1.00 31.72 3.55
74 75 8.481492 TCCATGCTTTCATTGAATATATGGTT 57.519 30.769 22.34 0.00 32.47 3.67
75 76 8.926374 TCCATGCTTTCATTGAATATATGGTTT 58.074 29.630 22.34 0.00 32.47 3.27
76 77 9.199982 CCATGCTTTCATTGAATATATGGTTTC 57.800 33.333 18.65 0.00 0.00 2.78
77 78 9.199982 CATGCTTTCATTGAATATATGGTTTCC 57.800 33.333 0.00 0.00 0.00 3.13
78 79 8.303780 TGCTTTCATTGAATATATGGTTTCCA 57.696 30.769 0.00 0.00 38.19 3.53
79 80 8.926374 TGCTTTCATTGAATATATGGTTTCCAT 58.074 29.630 0.00 6.52 46.99 3.41
80 81 9.415544 GCTTTCATTGAATATATGGTTTCCATC 57.584 33.333 4.45 0.00 40.74 3.51
83 84 9.865152 TTCATTGAATATATGGTTTCCATCAGA 57.135 29.630 4.45 0.00 40.74 3.27
98 99 6.174720 TCCATCAGATATGTACTCCAAACC 57.825 41.667 0.00 0.00 0.00 3.27
106 107 4.819105 ATGTACTCCAAACCGATGAAGA 57.181 40.909 0.00 0.00 0.00 2.87
107 108 4.188247 TGTACTCCAAACCGATGAAGAG 57.812 45.455 0.00 0.00 0.00 2.85
209 219 1.727022 CCGCAGCTGAAGCAAAACG 60.727 57.895 20.43 8.57 45.16 3.60
217 227 2.644078 CTGAAGCAAAACGAGAAGCAC 58.356 47.619 0.00 0.00 0.00 4.40
691 701 1.006519 CCTCACTCTCCCTCCTCTTCA 59.993 57.143 0.00 0.00 0.00 3.02
693 703 0.814457 CACTCTCCCTCCTCTTCACG 59.186 60.000 0.00 0.00 0.00 4.35
698 708 2.583441 CCCTCCTCTTCACGCACCA 61.583 63.158 0.00 0.00 0.00 4.17
712 1182 2.529389 ACCACCACTCCTCCACCC 60.529 66.667 0.00 0.00 0.00 4.61
713 1183 3.330720 CCACCACTCCTCCACCCC 61.331 72.222 0.00 0.00 0.00 4.95
1170 1652 1.898574 CGAGGGCAACAGCAACCTT 60.899 57.895 0.00 0.00 39.74 3.50
1674 2156 2.599597 CCAGGAGGCAATCTGGGG 59.400 66.667 11.40 0.00 44.99 4.96
1734 2216 1.666189 GTTCTTGGGCTAGTTGATCGC 59.334 52.381 0.00 0.00 0.00 4.58
1743 2225 0.241749 TAGTTGATCGCGTTCCACGT 59.758 50.000 14.25 6.64 44.73 4.49
1809 2291 1.734655 ACAAGTCTGGGTGGACTGAT 58.265 50.000 0.00 0.00 44.67 2.90
1938 2420 2.741145 GAGGAAGCTACAGAGGAGGAA 58.259 52.381 0.00 0.00 0.00 3.36
1956 2438 3.274586 CTCATGGATGCCACGGCG 61.275 66.667 4.80 4.80 45.51 6.46
2280 2762 5.639506 AGTTCCATCTTGTTTATCGTCACAG 59.360 40.000 0.00 0.00 0.00 3.66
2281 2763 5.147330 TCCATCTTGTTTATCGTCACAGT 57.853 39.130 0.00 0.00 0.00 3.55
2699 3374 4.460382 CAGATGTTTGCCTCTTGTGGTTAT 59.540 41.667 0.00 0.00 0.00 1.89
2747 3422 6.963322 AGAATTCTTGGCCTAGACATAGTTT 58.037 36.000 16.99 4.27 0.00 2.66
2768 3443 0.395586 TGTTCCAGTGGCAGCAAGTT 60.396 50.000 3.51 0.00 0.00 2.66
2777 3454 2.882137 GTGGCAGCAAGTTGTTTAGGTA 59.118 45.455 4.48 0.00 0.00 3.08
2802 3479 6.797454 ACACTGTAGCAGCTTAAGTATCTAC 58.203 40.000 0.00 16.34 34.37 2.59
2808 3485 3.552478 GCAGCTTAAGTATCTACGGGGAC 60.552 52.174 4.02 0.00 0.00 4.46
2885 3562 3.380471 ACTGAGATCCTAGTGTGCTCT 57.620 47.619 0.00 0.00 0.00 4.09
2984 3661 7.177392 AGGCTTTCCATTTGTAGAATATATGCC 59.823 37.037 0.00 0.00 33.74 4.40
2991 3668 2.268298 GTAGAATATATGCCCGGTGCG 58.732 52.381 0.00 0.00 45.60 5.34
3170 3847 3.951663 AGTTACCCACTCTATGTTTGGC 58.048 45.455 0.00 0.00 0.00 4.52
3186 3868 9.736023 CTATGTTTGGCTGGATAACTTTTATTC 57.264 33.333 0.00 0.00 0.00 1.75
3226 3908 1.334869 CAGCCCGGTGCATAGATTTTC 59.665 52.381 15.92 0.00 44.83 2.29
3304 3986 1.975680 TCATTAGCCCCGAATCCTACC 59.024 52.381 0.00 0.00 0.00 3.18
3319 4001 4.286813 TCCTACCTTCTTCATCAGGGAT 57.713 45.455 0.00 0.00 34.02 3.85
3320 4002 5.418692 TCCTACCTTCTTCATCAGGGATA 57.581 43.478 0.00 0.00 34.02 2.59
3321 4003 5.982391 TCCTACCTTCTTCATCAGGGATAT 58.018 41.667 0.00 0.00 34.02 1.63
3322 4004 6.393897 TCCTACCTTCTTCATCAGGGATATT 58.606 40.000 0.00 0.00 34.02 1.28
3323 4005 6.498651 TCCTACCTTCTTCATCAGGGATATTC 59.501 42.308 0.00 0.00 34.02 1.75
3324 4006 5.574970 ACCTTCTTCATCAGGGATATTCC 57.425 43.478 0.00 0.00 34.02 3.01
3339 4021 6.442513 GGATATTCCCTCTGTTCACTTTTG 57.557 41.667 0.00 0.00 0.00 2.44
3340 4022 5.946377 GGATATTCCCTCTGTTCACTTTTGT 59.054 40.000 0.00 0.00 0.00 2.83
3341 4023 7.110155 GGATATTCCCTCTGTTCACTTTTGTA 58.890 38.462 0.00 0.00 0.00 2.41
3342 4024 7.610305 GGATATTCCCTCTGTTCACTTTTGTAA 59.390 37.037 0.00 0.00 0.00 2.41
3343 4025 6.884280 ATTCCCTCTGTTCACTTTTGTAAG 57.116 37.500 0.00 0.00 37.40 2.34
3344 4026 5.367945 TCCCTCTGTTCACTTTTGTAAGT 57.632 39.130 0.00 0.00 45.40 2.24
3345 4027 5.365619 TCCCTCTGTTCACTTTTGTAAGTC 58.634 41.667 0.00 0.00 42.67 3.01
3346 4028 4.211374 CCCTCTGTTCACTTTTGTAAGTCG 59.789 45.833 0.00 0.00 42.67 4.18
3347 4029 4.809426 CCTCTGTTCACTTTTGTAAGTCGT 59.191 41.667 0.00 0.00 42.67 4.34
3348 4030 5.293569 CCTCTGTTCACTTTTGTAAGTCGTT 59.706 40.000 0.00 0.00 42.67 3.85
3349 4031 6.183360 CCTCTGTTCACTTTTGTAAGTCGTTT 60.183 38.462 0.00 0.00 42.67 3.60
3350 4032 7.010738 CCTCTGTTCACTTTTGTAAGTCGTTTA 59.989 37.037 0.00 0.00 42.67 2.01
3351 4033 8.254178 TCTGTTCACTTTTGTAAGTCGTTTAA 57.746 30.769 0.00 0.00 42.67 1.52
3352 4034 8.385111 TCTGTTCACTTTTGTAAGTCGTTTAAG 58.615 33.333 0.00 0.00 42.67 1.85
3353 4035 8.254178 TGTTCACTTTTGTAAGTCGTTTAAGA 57.746 30.769 0.00 0.00 42.67 2.10
3354 4036 8.170553 TGTTCACTTTTGTAAGTCGTTTAAGAC 58.829 33.333 0.00 0.00 42.67 3.01
3355 4037 7.830940 TCACTTTTGTAAGTCGTTTAAGACA 57.169 32.000 0.00 0.00 42.67 3.41
3356 4038 7.902032 TCACTTTTGTAAGTCGTTTAAGACAG 58.098 34.615 0.00 0.00 42.67 3.51
3357 4039 6.627671 CACTTTTGTAAGTCGTTTAAGACAGC 59.372 38.462 0.00 0.00 42.67 4.40
3358 4040 6.537660 ACTTTTGTAAGTCGTTTAAGACAGCT 59.462 34.615 0.00 0.00 40.60 4.24
3359 4041 5.900339 TTGTAAGTCGTTTAAGACAGCTG 57.100 39.130 13.48 13.48 43.24 4.24
3360 4042 5.190992 TGTAAGTCGTTTAAGACAGCTGA 57.809 39.130 23.35 0.00 43.24 4.26
3361 4043 5.593968 TGTAAGTCGTTTAAGACAGCTGAA 58.406 37.500 23.35 0.04 43.24 3.02
3362 4044 6.044046 TGTAAGTCGTTTAAGACAGCTGAAA 58.956 36.000 23.35 7.52 43.24 2.69
3363 4045 6.704493 TGTAAGTCGTTTAAGACAGCTGAAAT 59.296 34.615 23.35 7.92 43.24 2.17
3364 4046 6.619801 AAGTCGTTTAAGACAGCTGAAATT 57.380 33.333 23.35 13.76 43.24 1.82
3365 4047 5.990408 AGTCGTTTAAGACAGCTGAAATTG 58.010 37.500 23.35 7.48 43.24 2.32
3366 4048 5.758296 AGTCGTTTAAGACAGCTGAAATTGA 59.242 36.000 23.35 9.59 43.24 2.57
3367 4049 6.260050 AGTCGTTTAAGACAGCTGAAATTGAA 59.740 34.615 23.35 11.43 43.24 2.69
3368 4050 6.357240 GTCGTTTAAGACAGCTGAAATTGAAC 59.643 38.462 23.35 20.12 40.65 3.18
3369 4051 6.260050 TCGTTTAAGACAGCTGAAATTGAACT 59.740 34.615 23.35 0.00 27.41 3.01
3370 4052 6.358030 CGTTTAAGACAGCTGAAATTGAACTG 59.642 38.462 23.35 14.61 27.41 3.16
3371 4053 6.942532 TTAAGACAGCTGAAATTGAACTGT 57.057 33.333 23.35 0.00 43.93 3.55
3372 4054 5.841957 AAGACAGCTGAAATTGAACTGTT 57.158 34.783 23.35 0.00 41.45 3.16
3373 4055 5.841957 AGACAGCTGAAATTGAACTGTTT 57.158 34.783 23.35 0.00 41.45 2.83
3374 4056 6.212888 AGACAGCTGAAATTGAACTGTTTT 57.787 33.333 23.35 0.00 41.45 2.43
3375 4057 7.333528 AGACAGCTGAAATTGAACTGTTTTA 57.666 32.000 23.35 0.00 41.45 1.52
3376 4058 7.420800 AGACAGCTGAAATTGAACTGTTTTAG 58.579 34.615 23.35 0.00 41.45 1.85
3377 4059 6.507023 ACAGCTGAAATTGAACTGTTTTAGG 58.493 36.000 23.35 0.00 38.38 2.69
3378 4060 6.096846 ACAGCTGAAATTGAACTGTTTTAGGT 59.903 34.615 23.35 0.00 38.38 3.08
3379 4061 6.418819 CAGCTGAAATTGAACTGTTTTAGGTG 59.581 38.462 8.42 7.20 40.48 4.00
3380 4062 6.096846 AGCTGAAATTGAACTGTTTTAGGTGT 59.903 34.615 0.00 0.00 32.66 4.16
3381 4063 6.756542 GCTGAAATTGAACTGTTTTAGGTGTT 59.243 34.615 0.00 0.00 0.00 3.32
3382 4064 7.254084 GCTGAAATTGAACTGTTTTAGGTGTTG 60.254 37.037 0.00 0.00 0.00 3.33
3383 4065 7.607250 TGAAATTGAACTGTTTTAGGTGTTGT 58.393 30.769 0.00 0.00 0.00 3.32
3384 4066 7.757624 TGAAATTGAACTGTTTTAGGTGTTGTC 59.242 33.333 0.00 0.00 0.00 3.18
3385 4067 7.404671 AATTGAACTGTTTTAGGTGTTGTCT 57.595 32.000 0.00 0.00 0.00 3.41
3386 4068 6.827586 TTGAACTGTTTTAGGTGTTGTCTT 57.172 33.333 0.00 0.00 0.00 3.01
3387 4069 7.925043 TTGAACTGTTTTAGGTGTTGTCTTA 57.075 32.000 0.00 0.00 0.00 2.10
3388 4070 7.925043 TGAACTGTTTTAGGTGTTGTCTTAA 57.075 32.000 0.00 0.00 0.00 1.85
3389 4071 8.338072 TGAACTGTTTTAGGTGTTGTCTTAAA 57.662 30.769 0.00 0.00 0.00 1.52
3390 4072 8.962679 TGAACTGTTTTAGGTGTTGTCTTAAAT 58.037 29.630 0.00 0.00 0.00 1.40
3391 4073 9.233232 GAACTGTTTTAGGTGTTGTCTTAAATG 57.767 33.333 0.00 0.00 0.00 2.32
3392 4074 8.288689 ACTGTTTTAGGTGTTGTCTTAAATGT 57.711 30.769 0.00 0.00 0.00 2.71
3393 4075 8.403236 ACTGTTTTAGGTGTTGTCTTAAATGTC 58.597 33.333 0.00 0.00 0.00 3.06
3394 4076 8.514330 TGTTTTAGGTGTTGTCTTAAATGTCT 57.486 30.769 0.00 0.00 0.00 3.41
3395 4077 9.616156 TGTTTTAGGTGTTGTCTTAAATGTCTA 57.384 29.630 0.00 0.00 0.00 2.59
3400 4082 7.636326 AGGTGTTGTCTTAAATGTCTAAAACG 58.364 34.615 0.00 0.00 0.00 3.60
3401 4083 7.281549 AGGTGTTGTCTTAAATGTCTAAAACGT 59.718 33.333 0.00 0.00 0.00 3.99
3402 4084 7.585210 GGTGTTGTCTTAAATGTCTAAAACGTC 59.415 37.037 0.00 0.00 0.00 4.34
3403 4085 8.333186 GTGTTGTCTTAAATGTCTAAAACGTCT 58.667 33.333 0.00 0.00 0.00 4.18
3404 4086 8.885722 TGTTGTCTTAAATGTCTAAAACGTCTT 58.114 29.630 0.00 0.00 0.00 3.01
3407 4089 9.531942 TGTCTTAAATGTCTAAAACGTCTTACA 57.468 29.630 0.00 0.00 0.00 2.41
3413 4095 9.498307 AAATGTCTAAAACGTCTTACAAAAGTG 57.502 29.630 0.00 0.00 34.13 3.16
3414 4096 7.830940 TGTCTAAAACGTCTTACAAAAGTGA 57.169 32.000 0.00 0.00 34.13 3.41
3415 4097 8.254178 TGTCTAAAACGTCTTACAAAAGTGAA 57.746 30.769 0.00 0.00 34.13 3.18
3416 4098 8.170553 TGTCTAAAACGTCTTACAAAAGTGAAC 58.829 33.333 0.00 0.00 34.13 3.18
3417 4099 7.369026 GTCTAAAACGTCTTACAAAAGTGAACG 59.631 37.037 0.00 0.00 34.13 3.95
3418 4100 4.525411 AACGTCTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 34.13 4.44
3419 4101 3.784338 ACGTCTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 34.13 4.69
3420 4102 3.800506 ACGTCTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 34.13 4.63
3421 4103 3.183775 CGTCTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 34.13 4.30
3422 4104 3.497262 GTCTTACAAAAGTGAACGGAGGG 59.503 47.826 0.00 0.00 34.13 4.30
3423 4105 3.388676 TCTTACAAAAGTGAACGGAGGGA 59.611 43.478 0.00 0.00 34.13 4.20
3424 4106 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
3505 4187 3.519510 CCTGTCTTAATCAGAACCTGGGA 59.480 47.826 0.00 0.00 35.20 4.37
3511 4193 6.490381 GTCTTAATCAGAACCTGGGAACTTTT 59.510 38.462 0.00 0.00 31.28 2.27
3680 4364 6.371825 GTGTAGCAGAGTAAATTTGCCTTAGT 59.628 38.462 0.00 0.00 38.58 2.24
3728 4415 3.031013 CTGTTGGAGTTGAAACCCCTTT 58.969 45.455 0.00 0.00 0.00 3.11
3786 4508 5.242434 ACAGTACATTTGATTTGTCGGCTA 58.758 37.500 0.00 0.00 0.00 3.93
3800 4522 6.687081 TTGTCGGCTAATGTTTTATAAGGG 57.313 37.500 0.00 0.00 0.00 3.95
3806 4529 5.277828 GGCTAATGTTTTATAAGGGAGTGCG 60.278 44.000 0.00 0.00 0.00 5.34
3837 4579 0.108520 CAACAATGCATGCCTGGTCC 60.109 55.000 16.68 0.00 0.00 4.46
3890 4633 9.671279 AATATTGCTATGCTACTGTATTATGCA 57.329 29.630 2.53 2.53 38.05 3.96
3891 4634 7.984422 ATTGCTATGCTACTGTATTATGCAA 57.016 32.000 13.42 13.42 40.21 4.08
3892 4635 6.785488 TGCTATGCTACTGTATTATGCAAC 57.215 37.500 3.97 0.00 37.20 4.17
3893 4636 6.287525 TGCTATGCTACTGTATTATGCAACA 58.712 36.000 3.97 0.00 37.20 3.33
3894 4637 6.202762 TGCTATGCTACTGTATTATGCAACAC 59.797 38.462 3.97 0.00 37.20 3.32
3895 4638 5.657470 ATGCTACTGTATTATGCAACACG 57.343 39.130 3.97 0.00 37.20 4.49
3896 4639 3.308595 TGCTACTGTATTATGCAACACGC 59.691 43.478 0.00 0.00 42.89 5.34
3897 4640 3.555956 GCTACTGTATTATGCAACACGCT 59.444 43.478 0.00 0.00 43.06 5.07
3898 4641 4.743151 GCTACTGTATTATGCAACACGCTA 59.257 41.667 0.00 0.00 43.06 4.26
3899 4642 5.107837 GCTACTGTATTATGCAACACGCTAG 60.108 44.000 0.00 0.00 43.06 3.42
3900 4643 3.555956 ACTGTATTATGCAACACGCTAGC 59.444 43.478 4.06 4.06 43.06 3.42
3901 4644 2.869801 TGTATTATGCAACACGCTAGCC 59.130 45.455 9.66 0.00 43.06 3.93
3902 4645 2.036958 ATTATGCAACACGCTAGCCA 57.963 45.000 9.66 0.00 43.06 4.75
3903 4646 2.036958 TTATGCAACACGCTAGCCAT 57.963 45.000 9.66 8.07 43.06 4.40
3904 4647 1.298602 TATGCAACACGCTAGCCATG 58.701 50.000 9.66 10.58 43.06 3.66
3905 4648 1.378882 ATGCAACACGCTAGCCATGG 61.379 55.000 7.63 7.63 43.06 3.66
3906 4649 1.745115 GCAACACGCTAGCCATGGA 60.745 57.895 18.40 0.00 37.77 3.41
3907 4650 1.097547 GCAACACGCTAGCCATGGAT 61.098 55.000 18.40 13.25 37.77 3.41
3908 4651 0.659427 CAACACGCTAGCCATGGATG 59.341 55.000 18.40 5.44 0.00 3.51
3909 4652 0.253044 AACACGCTAGCCATGGATGT 59.747 50.000 18.40 0.00 0.00 3.06
3910 4653 0.179073 ACACGCTAGCCATGGATGTC 60.179 55.000 18.40 4.45 0.00 3.06
3911 4654 0.179076 CACGCTAGCCATGGATGTCA 60.179 55.000 18.40 0.00 0.00 3.58
3912 4655 0.761187 ACGCTAGCCATGGATGTCAT 59.239 50.000 18.40 0.00 36.31 3.06
3924 4667 4.506937 TGGATGTCATGGATGTCATTGA 57.493 40.909 0.00 0.00 36.84 2.57
3925 4668 5.056553 TGGATGTCATGGATGTCATTGAT 57.943 39.130 0.00 0.00 36.84 2.57
3926 4669 5.451354 TGGATGTCATGGATGTCATTGATT 58.549 37.500 0.00 0.00 36.84 2.57
3927 4670 5.894964 TGGATGTCATGGATGTCATTGATTT 59.105 36.000 0.00 0.00 36.84 2.17
3928 4671 6.381707 TGGATGTCATGGATGTCATTGATTTT 59.618 34.615 0.00 0.00 36.84 1.82
3929 4672 6.921857 GGATGTCATGGATGTCATTGATTTTC 59.078 38.462 0.00 0.00 36.84 2.29
3930 4673 7.201884 GGATGTCATGGATGTCATTGATTTTCT 60.202 37.037 0.00 0.00 36.84 2.52
3931 4674 7.470935 TGTCATGGATGTCATTGATTTTCTT 57.529 32.000 0.00 0.00 32.92 2.52
3932 4675 7.541162 TGTCATGGATGTCATTGATTTTCTTC 58.459 34.615 0.00 0.00 32.92 2.87
3933 4676 7.177041 TGTCATGGATGTCATTGATTTTCTTCA 59.823 33.333 0.00 0.00 32.92 3.02
3934 4677 8.030692 GTCATGGATGTCATTGATTTTCTTCAA 58.969 33.333 0.00 0.00 39.77 2.69
3935 4678 8.755028 TCATGGATGTCATTGATTTTCTTCAAT 58.245 29.630 0.00 0.00 45.03 2.57
4131 4874 2.668279 CGTTTCTTTTGGCGGAAGATGG 60.668 50.000 3.63 0.00 33.48 3.51
4147 4890 4.877378 AGATGGTTGTTTGTACCTCGTA 57.123 40.909 0.00 0.00 36.60 3.43
4158 4901 4.420143 CCTCGTAAGGGTGCATCG 57.580 61.111 0.00 0.00 39.21 3.84
4199 4942 6.521427 GCCCATTAGATCATCTATGTCCAACT 60.521 42.308 0.00 0.00 0.00 3.16
4200 4943 7.456725 CCCATTAGATCATCTATGTCCAACTT 58.543 38.462 0.00 0.00 0.00 2.66
4201 4944 7.389884 CCCATTAGATCATCTATGTCCAACTTG 59.610 40.741 0.00 0.00 0.00 3.16
4202 4945 7.094890 CCATTAGATCATCTATGTCCAACTTGC 60.095 40.741 0.00 0.00 0.00 4.01
4204 4947 5.366460 AGATCATCTATGTCCAACTTGCTG 58.634 41.667 0.00 0.00 0.00 4.41
4257 6450 5.600669 TCAGCTATATTCTACTCCCTCCA 57.399 43.478 0.00 0.00 0.00 3.86
4319 6513 7.700322 AGCAGATGTATATAGACACGTTTTG 57.300 36.000 1.52 0.00 30.52 2.44
4332 6526 3.570559 CACGTTTTGGTGTGTTTGTTCT 58.429 40.909 0.00 0.00 33.24 3.01
4348 6542 9.612620 GTGTTTGTTCTCTTATTTTAGTCCATG 57.387 33.333 0.00 0.00 0.00 3.66
4362 6556 8.598202 TTTTAGTCCATGTGTAGTCCATACTA 57.402 34.615 0.00 0.00 37.15 1.82
4486 6683 4.116747 CAAGGATTGCTACGAGAGAAGT 57.883 45.455 0.00 0.00 40.39 3.01
4487 6684 3.791973 AGGATTGCTACGAGAGAAGTG 57.208 47.619 0.00 0.00 0.00 3.16
4488 6685 2.159170 AGGATTGCTACGAGAGAAGTGC 60.159 50.000 0.00 0.00 0.00 4.40
4489 6686 2.417379 GGATTGCTACGAGAGAAGTGCA 60.417 50.000 0.00 0.00 0.00 4.57
4490 6687 3.452474 GATTGCTACGAGAGAAGTGCAT 58.548 45.455 0.00 0.00 0.00 3.96
4494 6691 4.065088 TGCTACGAGAGAAGTGCATTTTT 58.935 39.130 0.00 0.00 0.00 1.94
4560 6758 4.204012 TCAAAACCGGTCAGAATTCAACT 58.796 39.130 8.04 0.00 0.00 3.16
4568 6766 4.657013 GGTCAGAATTCAACTCTTCCCTT 58.343 43.478 8.44 0.00 0.00 3.95
4640 6838 1.079197 AATCAGCATGCCACGTCGA 60.079 52.632 15.66 1.97 34.76 4.20
5160 7391 7.613585 TGTAATTTAGACGGTATTGGAGTTCA 58.386 34.615 0.00 0.00 0.00 3.18
5215 7446 4.034510 GGGTTGAAATATGCACTTCTCTCG 59.965 45.833 0.00 0.00 0.00 4.04
5218 7449 6.037610 GGTTGAAATATGCACTTCTCTCGATT 59.962 38.462 0.00 0.00 0.00 3.34
5219 7450 6.594284 TGAAATATGCACTTCTCTCGATTG 57.406 37.500 0.00 0.00 0.00 2.67
5220 7451 5.007039 TGAAATATGCACTTCTCTCGATTGC 59.993 40.000 0.00 0.00 0.00 3.56
5221 7452 2.687700 ATGCACTTCTCTCGATTGCT 57.312 45.000 0.00 0.00 32.49 3.91
5222 7453 3.808466 ATGCACTTCTCTCGATTGCTA 57.192 42.857 0.00 0.00 32.49 3.49
5226 7457 4.339530 TGCACTTCTCTCGATTGCTATACT 59.660 41.667 0.00 0.00 32.49 2.12
5316 7547 3.941483 GCTAAAACTCCAGAATGCTAGCA 59.059 43.478 21.85 21.85 32.61 3.49
5337 7568 4.673441 CAGGAGTAGTCATCGATCGTTTT 58.327 43.478 15.94 0.00 0.00 2.43
5392 7627 6.920569 AATAATGTTCTTCGGTACATGGTC 57.079 37.500 0.00 0.00 36.36 4.02
5410 7645 2.114625 CGGATCATGGGGCATGCT 59.885 61.111 18.92 0.00 41.18 3.79
5433 7668 5.556915 TCAACCAAAGATGACGACCTAAAT 58.443 37.500 0.00 0.00 0.00 1.40
5508 7744 5.457140 ACGTTCAAATACGAAATTGCACAT 58.543 33.333 2.93 0.00 43.99 3.21
5555 8087 8.816640 AGCTTTTATTCAACAATGTTTACAGG 57.183 30.769 0.00 0.00 0.00 4.00
5577 8109 4.690280 GGGACGAAATTGCACAAATGAAAT 59.310 37.500 0.00 0.00 35.34 2.17
5610 9253 1.831389 CTATGGGCATTTCCGCGTCG 61.831 60.000 4.92 0.00 34.94 5.12
5705 9350 3.181445 ACGGCATGACCCATGTTATGTAT 60.181 43.478 0.00 0.00 43.10 2.29
5718 9363 9.801873 CCCATGTTATGTATGACCTTTAAAAAG 57.198 33.333 0.00 0.00 35.79 2.27
5789 9434 1.202964 CCCCCAAAGTCTAAAACCGGT 60.203 52.381 0.00 0.00 0.00 5.28
5798 9443 4.324267 AGTCTAAAACCGGTTCAATCAGG 58.676 43.478 22.53 7.12 0.00 3.86
5869 9514 2.825532 CCAGATTTCGGGTGGTTTTGAT 59.174 45.455 0.00 0.00 0.00 2.57
5915 9561 2.746362 CTGAGTTGGCAGATTTCAGGTC 59.254 50.000 10.09 0.00 38.14 3.85
5996 9642 1.191489 TGTGCCTCGACCAATCTCCA 61.191 55.000 0.00 0.00 0.00 3.86
6070 9724 4.697756 CCACCCACGACGCCATGT 62.698 66.667 0.00 0.00 0.00 3.21
6086 9761 1.603456 ATGTCGTCAAACATGCCACA 58.397 45.000 0.00 0.00 38.43 4.17
6136 9812 3.948719 GTGAGTCAACCGCCCCCA 61.949 66.667 0.00 0.00 0.00 4.96
6149 9825 1.694856 CCCCCATTTCTTTCCCCGA 59.305 57.895 0.00 0.00 0.00 5.14
6173 9849 5.532779 ACGAAGTCATCTACTGCATGATCTA 59.467 40.000 0.00 0.00 29.74 1.98
6232 9908 1.256812 GTGGCACCCTATTTTGCTGT 58.743 50.000 6.29 0.00 38.85 4.40
6616 10293 6.454795 TCAGTGAGGGTTTGCAATTTATTTC 58.545 36.000 0.00 0.00 0.00 2.17
6724 10423 4.558226 AAACAGAGTAGATGATGTGCCA 57.442 40.909 0.00 0.00 0.00 4.92
6736 10453 2.371841 TGATGTGCCAGTGGTAGTTTCT 59.628 45.455 11.74 0.00 0.00 2.52
6848 10565 5.473162 TCAAATGTAGCAGCTTTAGCAGAAA 59.527 36.000 0.00 0.00 45.16 2.52
6880 10597 2.548480 GCCAGAAGTTGTTGTAGGTGTC 59.452 50.000 0.00 0.00 0.00 3.67
6910 10628 4.580580 ACAGCTGTCGAGGAAGAAAATTTT 59.419 37.500 15.25 2.28 0.00 1.82
6959 10677 5.227569 TCTTGCTACATTTGAGAGTCCAA 57.772 39.130 0.00 0.00 0.00 3.53
7058 10777 0.982704 ACATCTTCAGGTGCAGCTCT 59.017 50.000 17.16 0.00 0.00 4.09
7060 10779 2.093764 ACATCTTCAGGTGCAGCTCTAC 60.094 50.000 17.16 0.00 0.00 2.59
7061 10780 0.898320 TCTTCAGGTGCAGCTCTACC 59.102 55.000 17.16 7.67 37.23 3.18
7062 10781 0.610174 CTTCAGGTGCAGCTCTACCA 59.390 55.000 17.16 0.00 39.46 3.25
7063 10782 1.002430 CTTCAGGTGCAGCTCTACCAA 59.998 52.381 17.16 3.27 39.46 3.67
7064 10783 0.321671 TCAGGTGCAGCTCTACCAAC 59.678 55.000 17.16 0.21 39.46 3.77
7065 10784 0.322975 CAGGTGCAGCTCTACCAACT 59.677 55.000 17.16 2.42 39.46 3.16
7066 10785 0.610687 AGGTGCAGCTCTACCAACTC 59.389 55.000 13.85 0.00 39.46 3.01
7067 10786 0.391793 GGTGCAGCTCTACCAACTCC 60.392 60.000 9.07 0.00 36.94 3.85
7068 10787 0.321671 GTGCAGCTCTACCAACTCCA 59.678 55.000 0.00 0.00 0.00 3.86
7069 10788 1.055849 TGCAGCTCTACCAACTCCAA 58.944 50.000 0.00 0.00 0.00 3.53
7086 10805 0.607217 CAAGTGCATGTGCTCCTCCA 60.607 55.000 6.55 0.00 42.66 3.86
7123 10884 1.815003 CCCAAGGTGCATCTTCTTCAC 59.185 52.381 9.91 0.00 0.00 3.18
7124 10885 2.553904 CCCAAGGTGCATCTTCTTCACT 60.554 50.000 9.91 0.00 0.00 3.41
7131 10892 1.742268 GCATCTTCTTCACTTCCAGGC 59.258 52.381 0.00 0.00 0.00 4.85
7137 10919 1.699656 CTTCACTTCCAGGCGCATCG 61.700 60.000 10.83 0.00 0.00 3.84
7150 10932 0.737367 CGCATCGTCTTCAGCTCCAA 60.737 55.000 0.00 0.00 0.00 3.53
7162 10944 7.466050 CGTCTTCAGCTCCAATAGGAAATAAAC 60.466 40.741 0.00 0.00 45.19 2.01
7168 10950 7.545615 CAGCTCCAATAGGAAATAAACCAAAAC 59.454 37.037 0.00 0.00 45.19 2.43
7189 10971 0.822811 TGCAAAGACCAAAGCAGCAA 59.177 45.000 0.00 0.00 32.48 3.91
7211 10993 2.632996 CAGGTACACCACAGAGAGGAAA 59.367 50.000 0.38 0.00 38.89 3.13
7228 11010 6.458210 AGAGGAAAAATGCCACAATTTACTG 58.542 36.000 0.00 0.00 0.00 2.74
7289 11071 7.818997 ATACATCTGCAGATCATGTTGAAAT 57.181 32.000 26.44 10.56 32.88 2.17
7324 11106 9.369904 GTGCCAATGAAGTATTACATGAAAATT 57.630 29.630 0.00 0.00 0.00 1.82
7411 11196 2.871633 GCTAAAGAATCAGAGGCAGAGC 59.128 50.000 0.00 0.00 0.00 4.09
7414 11199 2.695127 AGAATCAGAGGCAGAGCAAG 57.305 50.000 0.00 0.00 0.00 4.01
7451 11236 3.852578 AGGGAAATTAGGAGGCAGAAGAA 59.147 43.478 0.00 0.00 0.00 2.52
7452 11237 4.480166 AGGGAAATTAGGAGGCAGAAGAAT 59.520 41.667 0.00 0.00 0.00 2.40
7453 11238 4.824537 GGGAAATTAGGAGGCAGAAGAATC 59.175 45.833 0.00 0.00 0.00 2.52
7455 11240 5.530543 GGAAATTAGGAGGCAGAAGAATCAG 59.469 44.000 0.00 0.00 0.00 2.90
7457 11242 5.549742 ATTAGGAGGCAGAAGAATCAGAG 57.450 43.478 0.00 0.00 0.00 3.35
7459 11244 1.474855 GGAGGCAGAAGAATCAGAGGC 60.475 57.143 0.00 0.00 0.00 4.70
7461 11246 1.065564 AGGCAGAAGAATCAGAGGCAC 60.066 52.381 0.00 0.00 0.00 5.01
7462 11247 1.339438 GGCAGAAGAATCAGAGGCACA 60.339 52.381 0.00 0.00 0.00 4.57
7463 11248 2.008329 GCAGAAGAATCAGAGGCACAG 58.992 52.381 0.00 0.00 0.00 3.66
7464 11249 2.614987 GCAGAAGAATCAGAGGCACAGT 60.615 50.000 0.00 0.00 0.00 3.55
7465 11250 3.672808 CAGAAGAATCAGAGGCACAGTT 58.327 45.455 0.00 0.00 0.00 3.16
7466 11251 3.683822 CAGAAGAATCAGAGGCACAGTTC 59.316 47.826 0.00 0.00 0.00 3.01
7467 11252 3.582208 AGAAGAATCAGAGGCACAGTTCT 59.418 43.478 0.00 0.00 0.00 3.01
7471 11256 1.413118 TCAGAGGCACAGTTCTGACA 58.587 50.000 6.83 0.00 43.51 3.58
7602 12656 4.876679 GTGAGGGTACAAGAAAATAGAGGC 59.123 45.833 0.00 0.00 0.00 4.70
7784 12839 6.338214 TCTGGACTTGCTCATGTAGATATC 57.662 41.667 0.00 0.00 0.00 1.63
7882 12937 5.957771 TTGCTCCTTGTTACTCCATAGAT 57.042 39.130 0.00 0.00 0.00 1.98
8011 13066 4.631131 CTGGAAGGCCTAAAACAAAAAGG 58.369 43.478 5.16 0.00 34.31 3.11
8132 13187 5.416639 TCAAGCTGTAAGAACAATGATGCAT 59.583 36.000 0.00 0.00 34.49 3.96
8152 13207 5.127356 TGCATCTAAACATCATGGAAATGCA 59.873 36.000 9.86 9.86 43.17 3.96
8177 13232 2.867624 TGGTCAGAGAAGCTGCAAAAT 58.132 42.857 1.02 0.00 44.52 1.82
8183 13238 6.442112 GTCAGAGAAGCTGCAAAATAAAAGT 58.558 36.000 1.02 0.00 44.52 2.66
8225 13280 5.219343 TGATGCTCTTCAGACTCAGAAAA 57.781 39.130 0.00 0.00 0.00 2.29
8265 13320 7.386848 GCAGGTTAAGATGACACTTGTTAGTAA 59.613 37.037 0.00 0.00 31.96 2.24
8298 13353 6.697395 ACTTGGTTGCTTTTTGTTTCTACTT 58.303 32.000 0.00 0.00 0.00 2.24
8478 13536 0.250467 TCACAGCCAAGCTCTCAACC 60.250 55.000 0.00 0.00 36.40 3.77
8616 13688 6.923012 TGTGATATTGTGCTAAATTTGTGCT 58.077 32.000 15.58 2.68 0.00 4.40
8617 13689 8.049655 TGTGATATTGTGCTAAATTTGTGCTA 57.950 30.769 15.58 5.85 0.00 3.49
8618 13690 7.967854 TGTGATATTGTGCTAAATTTGTGCTAC 59.032 33.333 15.58 12.73 0.00 3.58
8619 13691 7.967854 GTGATATTGTGCTAAATTTGTGCTACA 59.032 33.333 15.58 14.37 0.00 2.74
8620 13692 8.685427 TGATATTGTGCTAAATTTGTGCTACAT 58.315 29.630 15.58 9.08 0.00 2.29
8680 13752 5.916318 TCTGTTCATTTGAGGCACAATTTT 58.084 33.333 0.00 0.00 38.36 1.82
8765 13837 9.318041 CTTAAACATCTTCAGTACATTTGTTCG 57.682 33.333 0.00 0.00 0.00 3.95
8814 17714 4.185467 ACTCTGACAGTGCATACAGAAG 57.815 45.455 1.59 10.58 38.60 2.85
8882 17841 8.534496 TCCAGTACCTAACATAGAAACTTAACC 58.466 37.037 0.00 0.00 0.00 2.85
8906 17865 6.223852 CGCATTTCTCCAGTACCTAACATAT 58.776 40.000 0.00 0.00 0.00 1.78
8952 17923 8.358148 CACTTGACTAGAAACTTAACTCCAGTA 58.642 37.037 0.00 0.00 0.00 2.74
9016 18025 2.125512 GTCGGAGTGGCGAATGCT 60.126 61.111 0.00 0.00 42.25 3.79
9067 18076 3.518998 GCTCCTGTCGCCGAGCTA 61.519 66.667 1.88 0.00 46.48 3.32
9164 18189 2.031012 TGCTTGCTGTCCTCCACG 59.969 61.111 0.00 0.00 0.00 4.94
9189 18214 3.699894 CCACCTGCTCCTGCTCGT 61.700 66.667 0.00 0.00 40.48 4.18
9195 18220 2.343758 GCTCCTGCTCGTTGTCCA 59.656 61.111 0.00 0.00 36.03 4.02
9256 18281 2.554032 GCACAATAACCTGCTTCACTGT 59.446 45.455 0.00 0.00 0.00 3.55
9257 18282 3.610114 GCACAATAACCTGCTTCACTGTG 60.610 47.826 0.17 0.17 36.78 3.66
9258 18283 3.565482 CACAATAACCTGCTTCACTGTGT 59.435 43.478 7.79 0.00 0.00 3.72
9259 18284 4.754618 CACAATAACCTGCTTCACTGTGTA 59.245 41.667 7.79 0.00 0.00 2.90
9260 18285 5.238432 CACAATAACCTGCTTCACTGTGTAA 59.762 40.000 7.79 0.60 0.00 2.41
9261 18286 5.470098 ACAATAACCTGCTTCACTGTGTAAG 59.530 40.000 7.79 10.78 0.00 2.34
9262 18287 3.560636 AACCTGCTTCACTGTGTAAGT 57.439 42.857 7.79 0.00 40.93 2.24
9285 18310 4.696479 CATCTAGTGCCCCTTAGTGATT 57.304 45.455 0.00 0.00 0.00 2.57
9286 18311 4.636249 CATCTAGTGCCCCTTAGTGATTC 58.364 47.826 0.00 0.00 0.00 2.52
9287 18312 3.995636 TCTAGTGCCCCTTAGTGATTCT 58.004 45.455 0.00 0.00 0.00 2.40
9288 18313 3.706594 TCTAGTGCCCCTTAGTGATTCTG 59.293 47.826 0.00 0.00 0.00 3.02
9289 18314 1.561542 AGTGCCCCTTAGTGATTCTGG 59.438 52.381 0.00 0.00 0.00 3.86
9290 18315 1.282157 GTGCCCCTTAGTGATTCTGGT 59.718 52.381 0.00 0.00 0.00 4.00
9291 18316 1.281867 TGCCCCTTAGTGATTCTGGTG 59.718 52.381 0.00 0.00 0.00 4.17
9292 18317 1.282157 GCCCCTTAGTGATTCTGGTGT 59.718 52.381 0.00 0.00 0.00 4.16
9293 18318 2.504175 GCCCCTTAGTGATTCTGGTGTA 59.496 50.000 0.00 0.00 0.00 2.90
9294 18319 3.136626 GCCCCTTAGTGATTCTGGTGTAT 59.863 47.826 0.00 0.00 0.00 2.29
9295 18320 4.385310 GCCCCTTAGTGATTCTGGTGTATT 60.385 45.833 0.00 0.00 0.00 1.89
9296 18321 5.126067 CCCCTTAGTGATTCTGGTGTATTG 58.874 45.833 0.00 0.00 0.00 1.90
9297 18322 5.104527 CCCCTTAGTGATTCTGGTGTATTGA 60.105 44.000 0.00 0.00 0.00 2.57
9298 18323 6.414732 CCCTTAGTGATTCTGGTGTATTGAA 58.585 40.000 0.00 0.00 0.00 2.69
9299 18324 6.540189 CCCTTAGTGATTCTGGTGTATTGAAG 59.460 42.308 0.00 0.00 0.00 3.02
9300 18325 7.331026 CCTTAGTGATTCTGGTGTATTGAAGA 58.669 38.462 0.00 0.00 0.00 2.87
9301 18326 7.278868 CCTTAGTGATTCTGGTGTATTGAAGAC 59.721 40.741 0.00 0.00 0.00 3.01
9302 18327 6.365970 AGTGATTCTGGTGTATTGAAGACT 57.634 37.500 0.00 0.00 0.00 3.24
9303 18328 6.773638 AGTGATTCTGGTGTATTGAAGACTT 58.226 36.000 0.00 0.00 0.00 3.01
9304 18329 7.907389 AGTGATTCTGGTGTATTGAAGACTTA 58.093 34.615 0.00 0.00 0.00 2.24
9305 18330 8.543774 AGTGATTCTGGTGTATTGAAGACTTAT 58.456 33.333 0.00 0.00 0.00 1.73
9306 18331 9.817809 GTGATTCTGGTGTATTGAAGACTTATA 57.182 33.333 0.00 0.00 0.00 0.98
9308 18333 9.482627 GATTCTGGTGTATTGAAGACTTATAGG 57.517 37.037 0.00 0.00 0.00 2.57
9309 18334 7.973048 TCTGGTGTATTGAAGACTTATAGGT 57.027 36.000 0.00 0.00 0.00 3.08
9310 18335 8.375493 TCTGGTGTATTGAAGACTTATAGGTT 57.625 34.615 0.00 0.00 0.00 3.50
9311 18336 9.483489 TCTGGTGTATTGAAGACTTATAGGTTA 57.517 33.333 0.00 0.00 0.00 2.85
9314 18339 9.543783 GGTGTATTGAAGACTTATAGGTTAAGG 57.456 37.037 0.00 0.00 0.00 2.69
9315 18340 9.543783 GTGTATTGAAGACTTATAGGTTAAGGG 57.456 37.037 0.00 0.00 0.00 3.95
9316 18341 9.496710 TGTATTGAAGACTTATAGGTTAAGGGA 57.503 33.333 0.00 0.00 0.00 4.20
9317 18342 9.761504 GTATTGAAGACTTATAGGTTAAGGGAC 57.238 37.037 0.00 0.00 0.00 4.46
9319 18344 9.725206 ATTGAAGACTTATAGGTTAAGGGACTA 57.275 33.333 0.00 0.00 38.49 2.59
9320 18345 9.551339 TTGAAGACTTATAGGTTAAGGGACTAA 57.449 33.333 0.00 0.00 38.49 2.24
9321 18346 9.725206 TGAAGACTTATAGGTTAAGGGACTAAT 57.275 33.333 0.00 0.00 38.49 1.73
9322 18347 9.984190 GAAGACTTATAGGTTAAGGGACTAATG 57.016 37.037 0.00 0.00 38.49 1.90
9323 18348 7.964624 AGACTTATAGGTTAAGGGACTAATGC 58.035 38.462 0.00 0.00 38.49 3.56
9324 18349 6.756221 ACTTATAGGTTAAGGGACTAATGCG 58.244 40.000 0.00 0.00 38.49 4.73
9325 18350 6.325804 ACTTATAGGTTAAGGGACTAATGCGT 59.674 38.462 0.00 0.00 38.49 5.24
9326 18351 3.994931 AGGTTAAGGGACTAATGCGTT 57.005 42.857 0.00 0.00 38.49 4.84
9327 18352 4.296621 AGGTTAAGGGACTAATGCGTTT 57.703 40.909 0.00 0.00 38.49 3.60
9328 18353 4.007659 AGGTTAAGGGACTAATGCGTTTG 58.992 43.478 0.00 0.00 38.49 2.93
9329 18354 3.754850 GGTTAAGGGACTAATGCGTTTGT 59.245 43.478 5.40 5.40 38.49 2.83
9330 18355 4.379082 GGTTAAGGGACTAATGCGTTTGTG 60.379 45.833 10.53 0.00 38.49 3.33
9331 18356 2.851263 AGGGACTAATGCGTTTGTGA 57.149 45.000 10.53 0.00 36.02 3.58
9332 18357 2.699954 AGGGACTAATGCGTTTGTGAG 58.300 47.619 10.53 0.00 36.02 3.51
9333 18358 2.038557 AGGGACTAATGCGTTTGTGAGT 59.961 45.455 10.53 0.85 36.02 3.41
9334 18359 2.159627 GGGACTAATGCGTTTGTGAGTG 59.840 50.000 10.53 0.00 0.00 3.51
9335 18360 2.806244 GGACTAATGCGTTTGTGAGTGT 59.194 45.455 10.53 0.00 0.00 3.55
9336 18361 3.991773 GGACTAATGCGTTTGTGAGTGTA 59.008 43.478 10.53 0.00 0.00 2.90
9337 18362 4.143179 GGACTAATGCGTTTGTGAGTGTAC 60.143 45.833 10.53 0.00 0.00 2.90
9338 18363 4.373527 ACTAATGCGTTTGTGAGTGTACA 58.626 39.130 4.90 0.00 0.00 2.90
9339 18364 3.602390 AATGCGTTTGTGAGTGTACAC 57.398 42.857 18.56 18.56 40.68 2.90
9340 18365 2.011540 TGCGTTTGTGAGTGTACACA 57.988 45.000 27.06 5.37 46.86 3.72
9350 18375 6.510879 TGTGAGTGTACACAGGTCTATAAG 57.489 41.667 27.06 0.00 44.29 1.73
9351 18376 6.008331 TGTGAGTGTACACAGGTCTATAAGT 58.992 40.000 27.06 2.15 44.29 2.24
9352 18377 6.150641 TGTGAGTGTACACAGGTCTATAAGTC 59.849 42.308 27.06 11.81 44.29 3.01
9353 18378 6.374894 GTGAGTGTACACAGGTCTATAAGTCT 59.625 42.308 27.06 1.48 40.11 3.24
9354 18379 7.551974 GTGAGTGTACACAGGTCTATAAGTCTA 59.448 40.741 27.06 1.34 40.11 2.59
9355 18380 8.272889 TGAGTGTACACAGGTCTATAAGTCTAT 58.727 37.037 27.06 0.40 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.588472 TGGATAAGGAGTGTACATTATGAGATG 58.412 37.037 0.00 0.00 29.06 2.90
6 7 8.421784 GTTGGATAAGGAGTGTACATTATGAGA 58.578 37.037 0.00 0.00 29.06 3.27
7 8 7.382488 CGTTGGATAAGGAGTGTACATTATGAG 59.618 40.741 0.00 0.00 29.06 2.90
8 9 7.207383 CGTTGGATAAGGAGTGTACATTATGA 58.793 38.462 0.00 0.00 29.06 2.15
9 10 6.423905 CCGTTGGATAAGGAGTGTACATTATG 59.576 42.308 0.00 0.00 29.06 1.90
10 11 6.522054 CCGTTGGATAAGGAGTGTACATTAT 58.478 40.000 0.00 0.00 31.06 1.28
11 12 5.682990 GCCGTTGGATAAGGAGTGTACATTA 60.683 44.000 0.00 0.00 0.00 1.90
12 13 4.766375 CCGTTGGATAAGGAGTGTACATT 58.234 43.478 0.00 0.00 0.00 2.71
13 14 3.431766 GCCGTTGGATAAGGAGTGTACAT 60.432 47.826 0.00 0.00 0.00 2.29
14 15 2.093869 GCCGTTGGATAAGGAGTGTACA 60.094 50.000 0.00 0.00 0.00 2.90
15 16 2.093869 TGCCGTTGGATAAGGAGTGTAC 60.094 50.000 0.00 0.00 0.00 2.90
16 17 2.093869 GTGCCGTTGGATAAGGAGTGTA 60.094 50.000 0.00 0.00 0.00 2.90
17 18 0.981183 TGCCGTTGGATAAGGAGTGT 59.019 50.000 0.00 0.00 0.00 3.55
18 19 1.369625 GTGCCGTTGGATAAGGAGTG 58.630 55.000 0.00 0.00 0.00 3.51
19 20 0.108329 CGTGCCGTTGGATAAGGAGT 60.108 55.000 0.00 0.00 0.00 3.85
20 21 0.810031 CCGTGCCGTTGGATAAGGAG 60.810 60.000 0.00 0.00 0.00 3.69
21 22 1.219664 CCGTGCCGTTGGATAAGGA 59.780 57.895 0.00 0.00 0.00 3.36
22 23 1.817941 CCCGTGCCGTTGGATAAGG 60.818 63.158 0.00 0.00 0.00 2.69
23 24 0.179056 ATCCCGTGCCGTTGGATAAG 60.179 55.000 0.00 0.00 37.12 1.73
24 25 0.179067 GATCCCGTGCCGTTGGATAA 60.179 55.000 0.00 0.00 38.98 1.75
25 26 1.331399 TGATCCCGTGCCGTTGGATA 61.331 55.000 0.00 0.00 38.98 2.59
26 27 2.189521 GATCCCGTGCCGTTGGAT 59.810 61.111 5.51 5.51 41.54 3.41
27 28 2.796483 CTTGATCCCGTGCCGTTGGA 62.796 60.000 0.00 0.00 0.00 3.53
28 29 2.359354 TTGATCCCGTGCCGTTGG 60.359 61.111 0.00 0.00 0.00 3.77
29 30 1.234615 AACTTGATCCCGTGCCGTTG 61.235 55.000 0.00 0.00 0.00 4.10
30 31 0.536460 AAACTTGATCCCGTGCCGTT 60.536 50.000 0.00 0.00 0.00 4.44
31 32 0.953960 GAAACTTGATCCCGTGCCGT 60.954 55.000 0.00 0.00 0.00 5.68
32 33 1.644786 GGAAACTTGATCCCGTGCCG 61.645 60.000 0.00 0.00 0.00 5.69
33 34 0.608035 TGGAAACTTGATCCCGTGCC 60.608 55.000 0.00 0.00 36.04 5.01
34 35 1.133025 CATGGAAACTTGATCCCGTGC 59.867 52.381 0.00 0.00 37.69 5.34
35 36 1.133025 GCATGGAAACTTGATCCCGTG 59.867 52.381 0.00 0.00 37.69 4.94
36 37 1.004745 AGCATGGAAACTTGATCCCGT 59.995 47.619 0.00 0.00 37.69 5.28
37 38 1.755179 AGCATGGAAACTTGATCCCG 58.245 50.000 0.00 0.00 37.69 5.14
38 39 3.511146 TGAAAGCATGGAAACTTGATCCC 59.489 43.478 0.00 0.00 37.69 3.85
39 40 4.789012 TGAAAGCATGGAAACTTGATCC 57.211 40.909 0.00 0.00 37.69 3.36
40 41 6.392354 TCAATGAAAGCATGGAAACTTGATC 58.608 36.000 0.00 0.00 37.69 2.92
41 42 6.349243 TCAATGAAAGCATGGAAACTTGAT 57.651 33.333 0.00 0.00 37.69 2.57
42 43 5.787953 TCAATGAAAGCATGGAAACTTGA 57.212 34.783 0.00 0.00 37.69 3.02
43 44 8.712285 ATATTCAATGAAAGCATGGAAACTTG 57.288 30.769 0.00 0.00 45.17 3.16
45 46 9.976511 CATATATTCAATGAAAGCATGGAAACT 57.023 29.630 0.00 0.00 45.17 2.66
46 47 9.199982 CCATATATTCAATGAAAGCATGGAAAC 57.800 33.333 19.70 0.00 45.17 2.78
47 48 8.926374 ACCATATATTCAATGAAAGCATGGAAA 58.074 29.630 26.06 0.00 45.17 3.13
48 49 8.481492 ACCATATATTCAATGAAAGCATGGAA 57.519 30.769 26.06 0.00 45.87 3.53
49 50 8.481492 AACCATATATTCAATGAAAGCATGGA 57.519 30.769 26.06 3.13 34.27 3.41
50 51 9.199982 GAAACCATATATTCAATGAAAGCATGG 57.800 33.333 21.38 21.38 35.25 3.66
51 52 9.199982 GGAAACCATATATTCAATGAAAGCATG 57.800 33.333 0.00 3.77 34.26 4.06
52 53 8.926374 TGGAAACCATATATTCAATGAAAGCAT 58.074 29.630 0.00 0.00 35.92 3.79
53 54 8.303780 TGGAAACCATATATTCAATGAAAGCA 57.696 30.769 0.00 0.00 0.00 3.91
54 55 9.415544 GATGGAAACCATATATTCAATGAAAGC 57.584 33.333 0.00 0.00 45.26 3.51
57 58 9.865152 TCTGATGGAAACCATATATTCAATGAA 57.135 29.630 0.00 0.00 45.26 2.57
67 68 8.543774 GGAGTACATATCTGATGGAAACCATAT 58.456 37.037 3.13 0.00 45.26 1.78
68 69 7.512402 TGGAGTACATATCTGATGGAAACCATA 59.488 37.037 3.13 0.00 45.26 2.74
70 71 5.665360 TGGAGTACATATCTGATGGAAACCA 59.335 40.000 0.00 0.00 38.19 3.67
71 72 6.174720 TGGAGTACATATCTGATGGAAACC 57.825 41.667 0.00 0.00 0.00 3.27
72 73 7.012421 GGTTTGGAGTACATATCTGATGGAAAC 59.988 40.741 0.00 0.00 0.00 2.78
73 74 7.054124 GGTTTGGAGTACATATCTGATGGAAA 58.946 38.462 0.00 0.00 0.00 3.13
74 75 6.591935 GGTTTGGAGTACATATCTGATGGAA 58.408 40.000 0.00 0.00 0.00 3.53
75 76 5.221441 CGGTTTGGAGTACATATCTGATGGA 60.221 44.000 0.00 0.00 0.00 3.41
76 77 4.991056 CGGTTTGGAGTACATATCTGATGG 59.009 45.833 0.00 0.00 0.00 3.51
77 78 5.842907 TCGGTTTGGAGTACATATCTGATG 58.157 41.667 0.00 0.00 0.00 3.07
78 79 6.267699 TCATCGGTTTGGAGTACATATCTGAT 59.732 38.462 0.00 0.00 0.00 2.90
79 80 5.596772 TCATCGGTTTGGAGTACATATCTGA 59.403 40.000 0.00 0.00 0.00 3.27
80 81 5.842907 TCATCGGTTTGGAGTACATATCTG 58.157 41.667 0.00 0.00 0.00 2.90
81 82 6.323996 TCTTCATCGGTTTGGAGTACATATCT 59.676 38.462 0.00 0.00 0.00 1.98
82 83 6.513180 TCTTCATCGGTTTGGAGTACATATC 58.487 40.000 0.00 0.00 0.00 1.63
83 84 6.323996 TCTCTTCATCGGTTTGGAGTACATAT 59.676 38.462 0.00 0.00 0.00 1.78
84 85 5.655090 TCTCTTCATCGGTTTGGAGTACATA 59.345 40.000 0.00 0.00 0.00 2.29
85 86 4.466370 TCTCTTCATCGGTTTGGAGTACAT 59.534 41.667 0.00 0.00 0.00 2.29
86 87 3.830178 TCTCTTCATCGGTTTGGAGTACA 59.170 43.478 0.00 0.00 0.00 2.90
87 88 4.451629 TCTCTTCATCGGTTTGGAGTAC 57.548 45.455 0.00 0.00 0.00 2.73
88 89 5.477607 TTTCTCTTCATCGGTTTGGAGTA 57.522 39.130 0.00 0.00 0.00 2.59
89 90 4.351874 TTTCTCTTCATCGGTTTGGAGT 57.648 40.909 0.00 0.00 0.00 3.85
90 91 5.689383 TTTTTCTCTTCATCGGTTTGGAG 57.311 39.130 0.00 0.00 0.00 3.86
117 118 1.599047 CCGCCCTCTGTGATCTTGT 59.401 57.895 0.00 0.00 0.00 3.16
209 219 3.173240 GGCGACGTCGTGCTTCTC 61.173 66.667 35.48 18.74 42.22 2.87
675 685 0.968393 GCGTGAAGAGGAGGGAGAGT 60.968 60.000 0.00 0.00 0.00 3.24
691 701 3.626924 GGAGGAGTGGTGGTGCGT 61.627 66.667 0.00 0.00 0.00 5.24
693 703 2.032681 GTGGAGGAGTGGTGGTGC 59.967 66.667 0.00 0.00 0.00 5.01
1674 2156 7.391148 TCCCTTGTAGAAAGCATAAATGTTC 57.609 36.000 0.00 0.00 0.00 3.18
1743 2225 0.673333 CGGCCTGTGCACATACAAGA 60.673 55.000 22.00 0.00 40.13 3.02
1809 2291 2.023673 CCAGCAACAAGTGACTGGAAA 58.976 47.619 13.68 0.00 46.34 3.13
1938 2420 2.124570 GCCGTGGCATCCATGAGT 60.125 61.111 5.89 0.00 42.73 3.41
1956 2438 1.673665 CCCAGTGAGGTCAGCAAGC 60.674 63.158 0.00 0.00 34.66 4.01
2280 2762 1.826385 AGATGCCAAAGTACAGCCAC 58.174 50.000 0.00 0.00 0.00 5.01
2281 2763 2.584835 AAGATGCCAAAGTACAGCCA 57.415 45.000 0.00 0.00 0.00 4.75
2559 3041 8.540492 GTGTAATACATCTTGTTAGGTCAATCG 58.460 37.037 0.00 0.00 0.00 3.34
2747 3422 0.746063 CTTGCTGCCACTGGAACAAA 59.254 50.000 0.00 0.00 38.70 2.83
2768 3443 4.039973 AGCTGCTACAGTGTTACCTAAACA 59.960 41.667 0.00 0.00 37.58 2.83
2777 3454 6.287589 AGATACTTAAGCTGCTACAGTGTT 57.712 37.500 18.99 9.70 33.43 3.32
2802 3479 2.343758 CAGTCCACACTGTCCCCG 59.656 66.667 0.00 0.00 44.63 5.73
2831 3508 4.740695 GGCTATCGAACACTGACACTATTC 59.259 45.833 0.00 0.00 0.00 1.75
2984 3661 1.426041 GCACAACCTATACGCACCGG 61.426 60.000 0.00 0.00 0.00 5.28
2991 3668 5.875359 GGCTCCTATAATGCACAACCTATAC 59.125 44.000 0.00 0.00 0.00 1.47
3039 3716 2.148768 GACCTGTCCCAACTAAAACGG 58.851 52.381 0.00 0.00 0.00 4.44
3170 3847 7.931948 AGGGATACACGAATAAAAGTTATCCAG 59.068 37.037 0.00 0.00 35.14 3.86
3186 3868 1.369091 GGCAGTTGCAGGGATACACG 61.369 60.000 6.43 0.00 44.36 4.49
3277 3959 1.348064 TCGGGGCTAATGATTCCGAT 58.652 50.000 2.09 0.00 43.84 4.18
3319 4001 7.514721 ACTTACAAAAGTGAACAGAGGGAATA 58.485 34.615 0.00 0.00 44.40 1.75
3320 4002 6.365520 ACTTACAAAAGTGAACAGAGGGAAT 58.634 36.000 0.00 0.00 44.40 3.01
3321 4003 5.751586 ACTTACAAAAGTGAACAGAGGGAA 58.248 37.500 0.00 0.00 44.40 3.97
3322 4004 5.365619 GACTTACAAAAGTGAACAGAGGGA 58.634 41.667 0.00 0.00 46.09 4.20
3323 4005 4.211374 CGACTTACAAAAGTGAACAGAGGG 59.789 45.833 0.00 0.00 46.09 4.30
3324 4006 4.809426 ACGACTTACAAAAGTGAACAGAGG 59.191 41.667 0.00 0.00 46.09 3.69
3325 4007 5.968387 ACGACTTACAAAAGTGAACAGAG 57.032 39.130 0.00 0.00 46.09 3.35
3326 4008 6.730960 AAACGACTTACAAAAGTGAACAGA 57.269 33.333 0.00 0.00 46.09 3.41
3327 4009 8.385111 TCTTAAACGACTTACAAAAGTGAACAG 58.615 33.333 0.00 0.00 46.09 3.16
3328 4010 8.170553 GTCTTAAACGACTTACAAAAGTGAACA 58.829 33.333 0.00 0.00 46.09 3.18
3329 4011 8.170553 TGTCTTAAACGACTTACAAAAGTGAAC 58.829 33.333 0.00 0.00 46.09 3.18
3330 4012 8.254178 TGTCTTAAACGACTTACAAAAGTGAA 57.746 30.769 0.00 0.00 46.09 3.18
3331 4013 7.464977 GCTGTCTTAAACGACTTACAAAAGTGA 60.465 37.037 0.00 0.00 46.09 3.41
3332 4014 6.627671 GCTGTCTTAAACGACTTACAAAAGTG 59.372 38.462 0.00 0.00 46.09 3.16
3334 4016 6.846283 CAGCTGTCTTAAACGACTTACAAAAG 59.154 38.462 5.25 0.00 38.77 2.27
3335 4017 6.535865 TCAGCTGTCTTAAACGACTTACAAAA 59.464 34.615 14.67 0.00 35.00 2.44
3336 4018 6.044046 TCAGCTGTCTTAAACGACTTACAAA 58.956 36.000 14.67 0.00 35.00 2.83
3337 4019 5.593968 TCAGCTGTCTTAAACGACTTACAA 58.406 37.500 14.67 0.00 35.00 2.41
3338 4020 5.190992 TCAGCTGTCTTAAACGACTTACA 57.809 39.130 14.67 0.00 35.00 2.41
3339 4021 6.520792 TTTCAGCTGTCTTAAACGACTTAC 57.479 37.500 14.67 0.00 35.00 2.34
3340 4022 7.439955 TCAATTTCAGCTGTCTTAAACGACTTA 59.560 33.333 14.67 0.00 35.00 2.24
3341 4023 6.260050 TCAATTTCAGCTGTCTTAAACGACTT 59.740 34.615 14.67 0.00 35.00 3.01
3342 4024 5.758296 TCAATTTCAGCTGTCTTAAACGACT 59.242 36.000 14.67 0.00 35.00 4.18
3343 4025 5.985781 TCAATTTCAGCTGTCTTAAACGAC 58.014 37.500 14.67 0.00 34.52 4.34
3344 4026 6.260050 AGTTCAATTTCAGCTGTCTTAAACGA 59.740 34.615 14.67 4.79 0.00 3.85
3345 4027 6.358030 CAGTTCAATTTCAGCTGTCTTAAACG 59.642 38.462 14.67 2.54 0.00 3.60
3346 4028 7.196331 ACAGTTCAATTTCAGCTGTCTTAAAC 58.804 34.615 14.67 11.99 35.78 2.01
3347 4029 7.333528 ACAGTTCAATTTCAGCTGTCTTAAA 57.666 32.000 14.67 7.20 35.78 1.52
3348 4030 6.942532 ACAGTTCAATTTCAGCTGTCTTAA 57.057 33.333 14.67 4.81 35.78 1.85
3349 4031 6.942532 AACAGTTCAATTTCAGCTGTCTTA 57.057 33.333 14.67 0.00 39.19 2.10
3350 4032 5.841957 AACAGTTCAATTTCAGCTGTCTT 57.158 34.783 14.67 3.02 39.19 3.01
3351 4033 5.841957 AAACAGTTCAATTTCAGCTGTCT 57.158 34.783 14.67 0.00 39.19 3.41
3352 4034 6.638468 CCTAAAACAGTTCAATTTCAGCTGTC 59.362 38.462 14.67 0.00 39.19 3.51
3353 4035 6.096846 ACCTAAAACAGTTCAATTTCAGCTGT 59.903 34.615 14.67 0.00 41.51 4.40
3354 4036 6.418819 CACCTAAAACAGTTCAATTTCAGCTG 59.581 38.462 7.63 7.63 0.00 4.24
3355 4037 6.096846 ACACCTAAAACAGTTCAATTTCAGCT 59.903 34.615 0.00 0.00 0.00 4.24
3356 4038 6.273071 ACACCTAAAACAGTTCAATTTCAGC 58.727 36.000 0.00 0.00 0.00 4.26
3357 4039 7.759433 ACAACACCTAAAACAGTTCAATTTCAG 59.241 33.333 0.00 0.00 0.00 3.02
3358 4040 7.607250 ACAACACCTAAAACAGTTCAATTTCA 58.393 30.769 0.00 0.00 0.00 2.69
3359 4041 7.973944 AGACAACACCTAAAACAGTTCAATTTC 59.026 33.333 0.00 0.00 0.00 2.17
3360 4042 7.836842 AGACAACACCTAAAACAGTTCAATTT 58.163 30.769 0.00 0.00 0.00 1.82
3361 4043 7.404671 AGACAACACCTAAAACAGTTCAATT 57.595 32.000 0.00 0.00 0.00 2.32
3362 4044 7.404671 AAGACAACACCTAAAACAGTTCAAT 57.595 32.000 0.00 0.00 0.00 2.57
3363 4045 6.827586 AAGACAACACCTAAAACAGTTCAA 57.172 33.333 0.00 0.00 0.00 2.69
3364 4046 7.925043 TTAAGACAACACCTAAAACAGTTCA 57.075 32.000 0.00 0.00 0.00 3.18
3365 4047 9.233232 CATTTAAGACAACACCTAAAACAGTTC 57.767 33.333 0.00 0.00 0.00 3.01
3366 4048 8.745590 ACATTTAAGACAACACCTAAAACAGTT 58.254 29.630 0.00 0.00 0.00 3.16
3367 4049 8.288689 ACATTTAAGACAACACCTAAAACAGT 57.711 30.769 0.00 0.00 0.00 3.55
3368 4050 8.621286 AGACATTTAAGACAACACCTAAAACAG 58.379 33.333 0.00 0.00 0.00 3.16
3369 4051 8.514330 AGACATTTAAGACAACACCTAAAACA 57.486 30.769 0.00 0.00 0.00 2.83
3374 4056 8.767085 CGTTTTAGACATTTAAGACAACACCTA 58.233 33.333 0.00 0.00 0.00 3.08
3375 4057 7.281549 ACGTTTTAGACATTTAAGACAACACCT 59.718 33.333 0.00 0.00 0.00 4.00
3376 4058 7.412063 ACGTTTTAGACATTTAAGACAACACC 58.588 34.615 0.00 0.00 0.00 4.16
3377 4059 8.333186 AGACGTTTTAGACATTTAAGACAACAC 58.667 33.333 0.00 0.00 0.00 3.32
3378 4060 8.428186 AGACGTTTTAGACATTTAAGACAACA 57.572 30.769 0.00 0.00 0.00 3.33
3381 4063 9.531942 TGTAAGACGTTTTAGACATTTAAGACA 57.468 29.630 0.00 0.00 0.00 3.41
3387 4069 9.498307 CACTTTTGTAAGACGTTTTAGACATTT 57.502 29.630 0.00 0.00 35.30 2.32
3388 4070 8.885722 TCACTTTTGTAAGACGTTTTAGACATT 58.114 29.630 0.00 0.00 35.30 2.71
3389 4071 8.428186 TCACTTTTGTAAGACGTTTTAGACAT 57.572 30.769 0.00 0.00 35.30 3.06
3390 4072 7.830940 TCACTTTTGTAAGACGTTTTAGACA 57.169 32.000 0.00 0.00 35.30 3.41
3391 4073 7.369026 CGTTCACTTTTGTAAGACGTTTTAGAC 59.631 37.037 0.00 0.00 35.30 2.59
3392 4074 7.393327 CGTTCACTTTTGTAAGACGTTTTAGA 58.607 34.615 0.00 0.00 35.30 2.10
3393 4075 6.626095 CCGTTCACTTTTGTAAGACGTTTTAG 59.374 38.462 0.00 0.00 35.30 1.85
3394 4076 6.312426 TCCGTTCACTTTTGTAAGACGTTTTA 59.688 34.615 0.00 0.00 35.30 1.52
3395 4077 5.122082 TCCGTTCACTTTTGTAAGACGTTTT 59.878 36.000 0.00 0.00 35.30 2.43
3396 4078 4.630940 TCCGTTCACTTTTGTAAGACGTTT 59.369 37.500 0.00 0.00 35.30 3.60
3397 4079 4.183101 TCCGTTCACTTTTGTAAGACGTT 58.817 39.130 0.00 0.00 35.30 3.99
3398 4080 3.784338 TCCGTTCACTTTTGTAAGACGT 58.216 40.909 0.00 0.00 35.30 4.34
3399 4081 3.183775 CCTCCGTTCACTTTTGTAAGACG 59.816 47.826 0.00 0.00 35.30 4.18
3400 4082 3.497262 CCCTCCGTTCACTTTTGTAAGAC 59.503 47.826 0.00 0.00 35.30 3.01
3401 4083 3.388676 TCCCTCCGTTCACTTTTGTAAGA 59.611 43.478 0.00 0.00 35.30 2.10
3402 4084 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
3403 4085 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
3404 4086 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
3405 4087 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
3406 4088 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
3407 4089 3.838903 AGATACTCCCTCCGTTCACTTTT 59.161 43.478 0.00 0.00 0.00 2.27
3408 4090 3.442076 AGATACTCCCTCCGTTCACTTT 58.558 45.455 0.00 0.00 0.00 2.66
3409 4091 3.103080 AGATACTCCCTCCGTTCACTT 57.897 47.619 0.00 0.00 0.00 3.16
3410 4092 2.830651 AGATACTCCCTCCGTTCACT 57.169 50.000 0.00 0.00 0.00 3.41
3411 4093 3.243468 GCTTAGATACTCCCTCCGTTCAC 60.243 52.174 0.00 0.00 0.00 3.18
3412 4094 2.957006 GCTTAGATACTCCCTCCGTTCA 59.043 50.000 0.00 0.00 0.00 3.18
3413 4095 3.004944 CAGCTTAGATACTCCCTCCGTTC 59.995 52.174 0.00 0.00 0.00 3.95
3414 4096 2.959707 CAGCTTAGATACTCCCTCCGTT 59.040 50.000 0.00 0.00 0.00 4.44
3415 4097 2.091775 ACAGCTTAGATACTCCCTCCGT 60.092 50.000 0.00 0.00 0.00 4.69
3416 4098 2.588620 ACAGCTTAGATACTCCCTCCG 58.411 52.381 0.00 0.00 0.00 4.63
3417 4099 4.521256 CAGTACAGCTTAGATACTCCCTCC 59.479 50.000 0.00 0.00 0.00 4.30
3418 4100 5.239963 GTCAGTACAGCTTAGATACTCCCTC 59.760 48.000 0.00 0.00 0.00 4.30
3419 4101 5.134661 GTCAGTACAGCTTAGATACTCCCT 58.865 45.833 0.00 0.00 0.00 4.20
3420 4102 4.888239 TGTCAGTACAGCTTAGATACTCCC 59.112 45.833 0.00 0.00 0.00 4.30
3421 4103 6.067263 CTGTCAGTACAGCTTAGATACTCC 57.933 45.833 0.00 0.00 46.28 3.85
3505 4187 5.718724 AGCAGGTAGTACGTCTAAAAGTT 57.281 39.130 0.00 0.00 0.00 2.66
3511 4193 3.441572 GGAACAAGCAGGTAGTACGTCTA 59.558 47.826 0.00 0.00 0.00 2.59
3680 4364 9.817809 ATCTTCAGCTATTTCTCACGTTTATAA 57.182 29.630 0.00 0.00 0.00 0.98
3728 4415 2.550855 CCTCTACTGTTGGCTTGAGCAA 60.551 50.000 5.24 0.00 44.36 3.91
3786 4508 3.951680 CCCGCACTCCCTTATAAAACATT 59.048 43.478 0.00 0.00 0.00 2.71
3800 4522 0.392461 TGCCAAATCTACCCGCACTC 60.392 55.000 0.00 0.00 0.00 3.51
3806 4529 2.892374 GCATTGTTGCCAAATCTACCC 58.108 47.619 0.00 0.00 43.38 3.69
3889 4632 0.659427 CATCCATGGCTAGCGTGTTG 59.341 55.000 6.96 6.59 0.00 3.33
3890 4633 0.253044 ACATCCATGGCTAGCGTGTT 59.747 50.000 6.96 0.00 0.00 3.32
3891 4634 0.179073 GACATCCATGGCTAGCGTGT 60.179 55.000 6.96 6.44 31.49 4.49
3892 4635 0.179076 TGACATCCATGGCTAGCGTG 60.179 55.000 6.96 10.06 36.54 5.34
3893 4636 0.761187 ATGACATCCATGGCTAGCGT 59.239 50.000 6.96 0.00 36.54 5.07
3894 4637 1.154197 CATGACATCCATGGCTAGCG 58.846 55.000 6.96 0.00 46.85 4.26
3902 4645 5.056553 TCAATGACATCCATGACATCCAT 57.943 39.130 5.21 0.00 41.09 3.41
3903 4646 4.506937 TCAATGACATCCATGACATCCA 57.493 40.909 5.21 0.00 41.09 3.41
3904 4647 6.401047 AAATCAATGACATCCATGACATCC 57.599 37.500 5.21 0.00 41.09 3.51
3905 4648 7.713750 AGAAAATCAATGACATCCATGACATC 58.286 34.615 5.21 0.00 41.09 3.06
3906 4649 7.655521 AGAAAATCAATGACATCCATGACAT 57.344 32.000 0.00 0.00 43.12 3.06
3907 4650 7.177041 TGAAGAAAATCAATGACATCCATGACA 59.823 33.333 0.00 0.00 36.93 3.58
3908 4651 7.541162 TGAAGAAAATCAATGACATCCATGAC 58.459 34.615 0.00 0.00 35.24 3.06
3909 4652 7.706100 TGAAGAAAATCAATGACATCCATGA 57.294 32.000 0.00 0.00 35.24 3.07
3910 4653 8.942338 ATTGAAGAAAATCAATGACATCCATG 57.058 30.769 1.98 0.00 45.76 3.66
3957 4700 9.712305 GGAGTGACATAATATACTATTGCTTGT 57.288 33.333 0.00 0.00 0.00 3.16
3958 4701 9.935241 AGGAGTGACATAATATACTATTGCTTG 57.065 33.333 0.00 0.00 0.00 4.01
3959 4702 9.935241 CAGGAGTGACATAATATACTATTGCTT 57.065 33.333 0.00 0.00 0.00 3.91
3960 4703 9.094578 ACAGGAGTGACATAATATACTATTGCT 57.905 33.333 0.00 0.00 0.00 3.91
3961 4704 9.360093 GACAGGAGTGACATAATATACTATTGC 57.640 37.037 0.00 0.00 0.00 3.56
3965 4708 9.025041 CCATGACAGGAGTGACATAATATACTA 57.975 37.037 0.00 0.00 37.01 1.82
3966 4709 7.730332 TCCATGACAGGAGTGACATAATATACT 59.270 37.037 0.00 0.00 37.01 2.12
3967 4710 7.896811 TCCATGACAGGAGTGACATAATATAC 58.103 38.462 0.00 0.00 37.01 1.47
3968 4711 8.534496 CATCCATGACAGGAGTGACATAATATA 58.466 37.037 0.00 0.00 41.90 0.86
3969 4712 7.236225 TCATCCATGACAGGAGTGACATAATAT 59.764 37.037 0.00 0.00 41.90 1.28
3970 4713 6.554605 TCATCCATGACAGGAGTGACATAATA 59.445 38.462 0.00 0.00 41.90 0.98
3971 4714 5.367644 TCATCCATGACAGGAGTGACATAAT 59.632 40.000 0.00 0.00 41.90 1.28
3972 4715 4.716287 TCATCCATGACAGGAGTGACATAA 59.284 41.667 0.00 0.00 41.90 1.90
3973 4716 4.289245 TCATCCATGACAGGAGTGACATA 58.711 43.478 0.00 0.00 41.90 2.29
3974 4717 3.109928 TCATCCATGACAGGAGTGACAT 58.890 45.455 0.00 0.00 41.90 3.06
3975 4718 2.539302 TCATCCATGACAGGAGTGACA 58.461 47.619 0.00 0.00 41.90 3.58
3976 4719 3.055530 ACTTCATCCATGACAGGAGTGAC 60.056 47.826 0.00 0.00 41.90 3.67
4069 4812 8.081633 CCACAAATCACTCAAGCAATAGTTTTA 58.918 33.333 0.00 0.00 0.00 1.52
4071 4814 6.040842 ACCACAAATCACTCAAGCAATAGTTT 59.959 34.615 0.00 0.00 0.00 2.66
4072 4815 5.536161 ACCACAAATCACTCAAGCAATAGTT 59.464 36.000 0.00 0.00 0.00 2.24
4073 4816 5.048504 CACCACAAATCACTCAAGCAATAGT 60.049 40.000 0.00 0.00 0.00 2.12
4074 4817 5.048504 ACACCACAAATCACTCAAGCAATAG 60.049 40.000 0.00 0.00 0.00 1.73
4075 4818 4.826733 ACACCACAAATCACTCAAGCAATA 59.173 37.500 0.00 0.00 0.00 1.90
4076 4819 3.638160 ACACCACAAATCACTCAAGCAAT 59.362 39.130 0.00 0.00 0.00 3.56
4131 4874 3.495753 CACCCTTACGAGGTACAAACAAC 59.504 47.826 0.00 0.00 41.85 3.32
4147 4890 2.643551 CCAAATAGTCGATGCACCCTT 58.356 47.619 0.00 0.00 0.00 3.95
4184 4927 3.264193 ACCAGCAAGTTGGACATAGATGA 59.736 43.478 10.05 0.00 40.87 2.92
4199 4942 2.810400 GCCACAGAAGAACTACCAGCAA 60.810 50.000 0.00 0.00 0.00 3.91
4200 4943 1.270839 GCCACAGAAGAACTACCAGCA 60.271 52.381 0.00 0.00 0.00 4.41
4201 4944 1.002544 AGCCACAGAAGAACTACCAGC 59.997 52.381 0.00 0.00 0.00 4.85
4202 4945 3.007398 AGAAGCCACAGAAGAACTACCAG 59.993 47.826 0.00 0.00 0.00 4.00
4204 4947 3.330267 CAGAAGCCACAGAAGAACTACC 58.670 50.000 0.00 0.00 0.00 3.18
4296 6489 6.479001 ACCAAAACGTGTCTATATACATCTGC 59.521 38.462 0.00 0.00 0.00 4.26
4297 6490 7.491372 ACACCAAAACGTGTCTATATACATCTG 59.509 37.037 0.00 0.00 43.50 2.90
4319 6513 8.074370 GGACTAAAATAAGAGAACAAACACACC 58.926 37.037 0.00 0.00 0.00 4.16
4332 6526 8.141298 TGGACTACACATGGACTAAAATAAGA 57.859 34.615 0.00 0.00 0.00 2.10
4477 6674 4.222114 GGTTGAAAAATGCACTTCTCTCG 58.778 43.478 0.00 0.00 0.00 4.04
4478 6675 4.550422 GGGTTGAAAAATGCACTTCTCTC 58.450 43.478 0.00 0.00 0.00 3.20
4479 6676 3.321968 GGGGTTGAAAAATGCACTTCTCT 59.678 43.478 0.00 0.00 0.00 3.10
4480 6677 3.653344 GGGGTTGAAAAATGCACTTCTC 58.347 45.455 0.00 0.00 0.00 2.87
4481 6678 2.035832 CGGGGTTGAAAAATGCACTTCT 59.964 45.455 0.00 0.00 0.00 2.85
4482 6679 2.035321 TCGGGGTTGAAAAATGCACTTC 59.965 45.455 0.00 0.00 0.00 3.01
4483 6680 2.035632 TCGGGGTTGAAAAATGCACTT 58.964 42.857 0.00 0.00 0.00 3.16
4484 6681 1.698506 TCGGGGTTGAAAAATGCACT 58.301 45.000 0.00 0.00 0.00 4.40
4485 6682 2.131972 GTTCGGGGTTGAAAAATGCAC 58.868 47.619 0.00 0.00 0.00 4.57
4486 6683 2.035632 AGTTCGGGGTTGAAAAATGCA 58.964 42.857 0.00 0.00 0.00 3.96
4487 6684 2.812358 AGTTCGGGGTTGAAAAATGC 57.188 45.000 0.00 0.00 0.00 3.56
4488 6685 4.314740 TGAAGTTCGGGGTTGAAAAATG 57.685 40.909 0.00 0.00 0.00 2.32
4489 6686 5.545063 ATTGAAGTTCGGGGTTGAAAAAT 57.455 34.783 0.00 0.00 0.00 1.82
4490 6687 5.221283 GGTATTGAAGTTCGGGGTTGAAAAA 60.221 40.000 0.00 0.00 0.00 1.94
4494 6691 2.372504 TGGTATTGAAGTTCGGGGTTGA 59.627 45.455 0.00 0.00 0.00 3.18
4560 6758 1.071699 CCGGTGAACAAGAAGGGAAGA 59.928 52.381 0.00 0.00 0.00 2.87
4568 6766 2.018515 GGTCAAAACCGGTGAACAAGA 58.981 47.619 8.52 0.00 35.36 3.02
5160 7391 4.600111 TGTCCTGGTCTAATTTACAACCCT 59.400 41.667 0.00 0.00 0.00 4.34
5283 7514 5.833131 TCTGGAGTTTTAGCAATTGGACTTT 59.167 36.000 7.72 0.00 0.00 2.66
5316 7547 4.985538 AAAACGATCGATGACTACTCCT 57.014 40.909 24.34 0.00 0.00 3.69
5337 7568 9.076781 TCAATAAAGTGGTGAGATTCATCAAAA 57.923 29.630 0.00 0.00 39.52 2.44
5343 7578 8.634335 TTGAATCAATAAAGTGGTGAGATTCA 57.366 30.769 9.98 9.98 44.51 2.57
5392 7627 2.987547 GCATGCCCCATGATCCGG 60.988 66.667 6.36 0.00 43.81 5.14
5410 7645 4.610605 TTAGGTCGTCATCTTTGGTTGA 57.389 40.909 0.00 0.00 0.00 3.18
5433 7668 7.892778 TCGTCAAGTAAGCATGTAATTTACA 57.107 32.000 11.47 11.47 43.80 2.41
5444 7679 4.112634 GCTCATACATCGTCAAGTAAGCA 58.887 43.478 0.00 0.00 0.00 3.91
5447 7682 8.766000 TTTAAAGCTCATACATCGTCAAGTAA 57.234 30.769 0.00 0.00 0.00 2.24
5486 7722 5.990745 ATGTGCAATTTCGTATTTGAACG 57.009 34.783 0.00 0.00 44.19 3.95
5515 7754 9.466497 TGAATAAAAGCTTCACAGGATTATCTT 57.534 29.630 0.00 0.00 0.00 2.40
5524 7763 7.935338 ACATTGTTGAATAAAAGCTTCACAG 57.065 32.000 0.00 0.00 32.57 3.66
5555 8087 5.844301 ATTTCATTTGTGCAATTTCGTCC 57.156 34.783 0.00 0.00 0.00 4.79
5577 8109 2.083774 CCCATAGAGCGCAAGAACAAA 58.916 47.619 11.47 0.00 43.02 2.83
5610 9253 0.383231 CCGAGTATGGTGACGGGTAC 59.617 60.000 0.00 0.00 41.41 3.34
5705 9350 9.503399 GATACTTTCCTCTCTTTTTAAAGGTCA 57.497 33.333 2.63 0.00 36.67 4.02
5718 9363 4.190001 GGGGAAAACGATACTTTCCTCTC 58.810 47.826 12.70 0.00 46.10 3.20
5789 9434 3.054361 GGAGAGTTTAGGGCCTGATTGAA 60.054 47.826 18.53 0.00 0.00 2.69
5798 9443 1.810755 CGGTTTTGGAGAGTTTAGGGC 59.189 52.381 0.00 0.00 0.00 5.19
5857 9502 4.302559 AGGAGACTAATCAAAACCACCC 57.697 45.455 0.00 0.00 40.61 4.61
5869 9514 2.563179 GTCCAGTCAGCAAGGAGACTAA 59.437 50.000 0.00 0.00 42.87 2.24
5915 9561 1.678101 GCTCCCCCAATCGATGAAAAG 59.322 52.381 0.00 0.00 0.00 2.27
5996 9642 2.178521 GTCGTCGTCGAGGCACAT 59.821 61.111 4.68 0.00 46.96 3.21
6070 9724 2.627791 CCTGTGGCATGTTTGACGA 58.372 52.632 0.00 0.00 31.31 4.20
6086 9761 0.336737 AGTACAGCTACTGGAGGCCT 59.663 55.000 3.86 3.86 35.51 5.19
6136 9812 2.038033 TGACTTCGTCGGGGAAAGAAAT 59.962 45.455 0.00 0.00 34.95 2.17
6149 9825 4.340666 AGATCATGCAGTAGATGACTTCGT 59.659 41.667 4.07 0.00 35.64 3.85
6173 9849 4.768583 CAGCTCTGATTTCTCCTAAGCTT 58.231 43.478 3.48 3.48 0.00 3.74
6222 9898 1.477700 GCCTGCCATGACAGCAAAATA 59.522 47.619 3.04 0.00 40.35 1.40
6232 9908 1.314534 CCACGATTTGCCTGCCATGA 61.315 55.000 0.00 0.00 0.00 3.07
6331 10008 0.673437 CGACAACACCTGCCCAAAAT 59.327 50.000 0.00 0.00 0.00 1.82
6592 10269 6.267471 AGAAATAAATTGCAAACCCTCACTGA 59.733 34.615 1.71 0.00 0.00 3.41
6593 10270 6.366877 CAGAAATAAATTGCAAACCCTCACTG 59.633 38.462 1.71 5.72 0.00 3.66
6616 10293 5.485620 TCTTCTCCACACTTGAATCATCAG 58.514 41.667 0.00 0.00 36.78 2.90
6724 10423 7.458397 TGGAATATGTTTCAGAAACTACCACT 58.542 34.615 23.57 6.61 41.90 4.00
6736 10453 7.716799 ACCTTTATGCTTGGAATATGTTTCA 57.283 32.000 0.00 0.00 0.00 2.69
6848 10565 2.883386 CAACTTCTGGCTCTGCTCTTTT 59.117 45.455 0.00 0.00 0.00 2.27
6880 10597 1.151668 CCTCGACAGCTGTCCTTTTG 58.848 55.000 35.07 23.04 41.86 2.44
6921 10639 4.853007 AGCAAGAAAGTCATTAGCCTCAT 58.147 39.130 0.00 0.00 0.00 2.90
7002 10720 4.464947 AGCTGCAAGAGGTACTTTTCTTT 58.535 39.130 1.02 0.00 41.55 2.52
7058 10777 2.503331 CACATGCACTTGGAGTTGGTA 58.497 47.619 0.00 0.00 0.00 3.25
7060 10779 0.038892 GCACATGCACTTGGAGTTGG 60.039 55.000 0.00 0.00 41.59 3.77
7061 10780 0.956633 AGCACATGCACTTGGAGTTG 59.043 50.000 6.64 0.00 45.16 3.16
7062 10781 1.242076 GAGCACATGCACTTGGAGTT 58.758 50.000 6.64 0.00 45.16 3.01
7063 10782 0.607489 GGAGCACATGCACTTGGAGT 60.607 55.000 6.64 0.00 45.16 3.85
7064 10783 0.322277 AGGAGCACATGCACTTGGAG 60.322 55.000 6.64 0.00 45.16 3.86
7065 10784 0.321919 GAGGAGCACATGCACTTGGA 60.322 55.000 6.64 0.00 45.16 3.53
7066 10785 1.310933 GGAGGAGCACATGCACTTGG 61.311 60.000 6.64 0.00 45.16 3.61
7067 10786 0.607217 TGGAGGAGCACATGCACTTG 60.607 55.000 6.64 0.00 45.16 3.16
7068 10787 0.607489 GTGGAGGAGCACATGCACTT 60.607 55.000 12.69 0.00 43.59 3.16
7069 10788 1.002868 GTGGAGGAGCACATGCACT 60.003 57.895 12.69 3.71 43.59 4.40
7086 10805 2.113986 GCTGCACCTGGAGTTGGT 59.886 61.111 0.00 0.00 38.53 3.67
7123 10884 1.424493 GAAGACGATGCGCCTGGAAG 61.424 60.000 4.18 0.00 0.00 3.46
7124 10885 1.447838 GAAGACGATGCGCCTGGAA 60.448 57.895 4.18 0.00 0.00 3.53
7131 10892 0.737367 TTGGAGCTGAAGACGATGCG 60.737 55.000 0.00 0.00 0.00 4.73
7137 10919 7.201741 GGTTTATTTCCTATTGGAGCTGAAGAC 60.202 40.741 0.00 0.00 44.24 3.01
7150 10932 6.926630 TGCAGGTTTTGGTTTATTTCCTAT 57.073 33.333 0.00 0.00 0.00 2.57
7162 10944 2.977772 TTGGTCTTTGCAGGTTTTGG 57.022 45.000 0.00 0.00 0.00 3.28
7168 10950 3.879912 CTGCTTTGGTCTTTGCAGG 57.120 52.632 5.98 0.00 46.24 4.85
7189 10971 1.147191 TCCTCTCTGTGGTGTACCTGT 59.853 52.381 2.32 0.00 36.82 4.00
7211 10993 6.815089 TGTCTTTCAGTAAATTGTGGCATTT 58.185 32.000 0.00 0.00 0.00 2.32
7228 11010 3.326836 AGCTGCTAGGTTCTGTCTTTC 57.673 47.619 0.00 0.00 0.00 2.62
7241 11023 6.042638 ACTCAAATTCAGAAGTAGCTGCTA 57.957 37.500 4.20 5.02 35.86 3.49
7273 11055 5.472148 TGTTCCAATTTCAACATGATCTGC 58.528 37.500 0.00 0.00 0.00 4.26
7289 11071 3.030291 ACTTCATTGGCACTTGTTCCAA 58.970 40.909 7.27 7.27 45.35 3.53
7324 11106 7.689299 TCATCATCACCTTCTTCTCCTTTTAA 58.311 34.615 0.00 0.00 0.00 1.52
7411 11196 6.834168 TTCCCTTGCTAATTTCCTTACTTG 57.166 37.500 0.00 0.00 0.00 3.16
7414 11199 8.414003 CCTAATTTCCCTTGCTAATTTCCTTAC 58.586 37.037 0.00 0.00 0.00 2.34
7452 11237 1.413118 TGTCAGAACTGTGCCTCTGA 58.587 50.000 6.58 6.58 44.49 3.27
7453 11238 2.469274 ATGTCAGAACTGTGCCTCTG 57.531 50.000 2.29 2.29 40.42 3.35
7455 11240 2.771089 TCAATGTCAGAACTGTGCCTC 58.229 47.619 1.73 0.00 0.00 4.70
7457 11242 3.503363 TGAATCAATGTCAGAACTGTGCC 59.497 43.478 1.73 0.00 0.00 5.01
7459 11244 5.936686 ACTGAATCAATGTCAGAACTGTG 57.063 39.130 8.36 0.00 44.44 3.66
7461 11246 6.549912 TCAACTGAATCAATGTCAGAACTG 57.450 37.500 8.36 0.00 44.44 3.16
7462 11247 8.725148 GTTATCAACTGAATCAATGTCAGAACT 58.275 33.333 8.36 0.00 44.44 3.01
7463 11248 8.506437 TGTTATCAACTGAATCAATGTCAGAAC 58.494 33.333 8.36 3.03 44.44 3.01
7464 11249 8.620116 TGTTATCAACTGAATCAATGTCAGAA 57.380 30.769 8.36 0.00 44.44 3.02
7465 11250 8.620116 TTGTTATCAACTGAATCAATGTCAGA 57.380 30.769 8.36 0.00 44.44 3.27
7602 12656 5.823045 AGTTCCTTTCCAGTTAACTGACTTG 59.177 40.000 32.50 17.92 46.59 3.16
7652 12707 7.337942 ACCTGATCTCCTTATGTTTTGCTTTAG 59.662 37.037 0.00 0.00 0.00 1.85
7784 12839 1.298859 GGTAAACCTGACAGCTGCCG 61.299 60.000 15.27 1.72 0.00 5.69
7870 12925 8.129496 TCTTGTTGTACACATCTATGGAGTAA 57.871 34.615 0.00 0.00 34.43 2.24
7976 13031 3.281727 CCTTCCAGGCAAGCTTATGTA 57.718 47.619 0.00 0.00 0.00 2.29
8006 13061 3.078305 TCTCCTTCCTCTCTCCTCCTTTT 59.922 47.826 0.00 0.00 0.00 2.27
8011 13066 4.323180 GGTTTTTCTCCTTCCTCTCTCCTC 60.323 50.000 0.00 0.00 0.00 3.71
8098 13153 8.893219 TGTTCTTACAGCTTGATCTATTATGG 57.107 34.615 0.00 0.00 0.00 2.74
8132 13187 6.778834 ATGTGCATTTCCATGATGTTTAGA 57.221 33.333 0.00 0.00 31.07 2.10
8152 13207 2.157738 GCAGCTTCTCTGACCAAATGT 58.842 47.619 0.00 0.00 45.72 2.71
8177 13232 5.621193 AGCCTCTTTGTCTTGCTACTTTTA 58.379 37.500 0.00 0.00 0.00 1.52
8183 13238 4.460263 TCAAAAGCCTCTTTGTCTTGCTA 58.540 39.130 4.11 0.00 37.52 3.49
8265 13320 8.504812 ACAAAAAGCAACCAAGTTTTCATTAT 57.495 26.923 0.00 0.00 0.00 1.28
8275 13330 8.755018 CATAAGTAGAAACAAAAAGCAACCAAG 58.245 33.333 0.00 0.00 0.00 3.61
8298 13353 7.913674 AACAAAAAGCAACCAAGTTTTCATA 57.086 28.000 0.00 0.00 0.00 2.15
8405 13463 5.600669 AGGGTTCCTGGTTTTCTTCTAAT 57.399 39.130 0.00 0.00 29.57 1.73
8434 13492 7.168219 AGCTTTGTTGAGATGTAGGTTCATTA 58.832 34.615 0.00 0.00 0.00 1.90
8478 13536 4.368391 AGCTTGGTTGTGAGCTCG 57.632 55.556 9.64 0.00 45.68 5.03
8616 13688 7.227711 ACAAGTGTAGCACAAATGTTGTATGTA 59.772 33.333 2.01 0.00 43.23 2.29
8617 13689 6.039270 ACAAGTGTAGCACAAATGTTGTATGT 59.961 34.615 2.01 0.00 43.23 2.29
8618 13690 6.360414 CACAAGTGTAGCACAAATGTTGTATG 59.640 38.462 2.01 0.00 43.23 2.39
8619 13691 6.437928 CACAAGTGTAGCACAAATGTTGTAT 58.562 36.000 2.01 0.00 43.23 2.29
8620 13692 5.731967 GCACAAGTGTAGCACAAATGTTGTA 60.732 40.000 1.79 0.00 43.23 2.41
8765 13837 6.002062 AGTTAAGTACTGAACAAATGCAGC 57.998 37.500 22.67 0.00 35.19 5.25
8814 17714 5.613358 AGTTAAGTACTGCAGAAATGCAC 57.387 39.130 23.35 9.98 40.23 4.57
8824 17724 8.008279 GCAGTTAAGTTTGTAGTTAAGTACTGC 58.992 37.037 18.87 14.86 40.59 4.40
8854 17768 7.793948 AAGTTTCTATGTTAGGTACTGGAGT 57.206 36.000 0.00 0.00 41.52 3.85
8882 17841 3.857052 TGTTAGGTACTGGAGAAATGCG 58.143 45.455 0.00 0.00 41.52 4.73
8906 17865 9.278978 TCAAGTGTCATTATGCAGTTAAGTTTA 57.721 29.630 0.00 0.00 0.00 2.01
8912 17871 7.836842 TCTAGTCAAGTGTCATTATGCAGTTA 58.163 34.615 0.00 0.00 0.00 2.24
8913 17872 6.701340 TCTAGTCAAGTGTCATTATGCAGTT 58.299 36.000 0.00 4.65 0.00 3.16
8914 17873 6.286240 TCTAGTCAAGTGTCATTATGCAGT 57.714 37.500 0.00 0.00 0.00 4.40
8915 17874 7.332926 AGTTTCTAGTCAAGTGTCATTATGCAG 59.667 37.037 0.00 0.00 0.00 4.41
8916 17875 7.161404 AGTTTCTAGTCAAGTGTCATTATGCA 58.839 34.615 0.00 0.00 0.00 3.96
8917 17876 7.602517 AGTTTCTAGTCAAGTGTCATTATGC 57.397 36.000 0.00 0.00 0.00 3.14
8921 17880 9.262358 GAGTTAAGTTTCTAGTCAAGTGTCATT 57.738 33.333 0.00 0.00 0.00 2.57
8923 17882 7.147794 TGGAGTTAAGTTTCTAGTCAAGTGTCA 60.148 37.037 0.00 0.00 0.00 3.58
8931 17897 9.708092 AAATGTACTGGAGTTAAGTTTCTAGTC 57.292 33.333 0.00 0.00 36.65 2.59
8952 17923 4.754114 GCAGAAGTGAAGACAGAGAAATGT 59.246 41.667 0.00 0.00 35.68 2.71
9016 18025 0.454600 GGAGACTTACATCCGCGTCA 59.545 55.000 4.92 0.00 0.00 4.35
9189 18214 2.303022 GTGAAGATGAGGAGGTGGACAA 59.697 50.000 0.00 0.00 0.00 3.18
9195 18220 1.277557 GTGCAGTGAAGATGAGGAGGT 59.722 52.381 0.00 0.00 0.00 3.85
9264 18289 4.346418 AGAATCACTAAGGGGCACTAGATG 59.654 45.833 0.00 0.00 0.00 2.90
9265 18290 4.346418 CAGAATCACTAAGGGGCACTAGAT 59.654 45.833 0.00 0.00 0.00 1.98
9266 18291 3.706594 CAGAATCACTAAGGGGCACTAGA 59.293 47.826 0.00 0.00 0.00 2.43
9267 18292 3.181461 CCAGAATCACTAAGGGGCACTAG 60.181 52.174 0.00 0.00 0.00 2.57
9268 18293 2.771943 CCAGAATCACTAAGGGGCACTA 59.228 50.000 0.00 0.00 0.00 2.74
9269 18294 1.561542 CCAGAATCACTAAGGGGCACT 59.438 52.381 0.00 0.00 0.00 4.40
9270 18295 1.282157 ACCAGAATCACTAAGGGGCAC 59.718 52.381 0.00 0.00 0.00 5.01
9271 18296 1.281867 CACCAGAATCACTAAGGGGCA 59.718 52.381 0.00 0.00 0.00 5.36
9272 18297 1.282157 ACACCAGAATCACTAAGGGGC 59.718 52.381 0.00 0.00 0.00 5.80
9273 18298 5.104527 TCAATACACCAGAATCACTAAGGGG 60.105 44.000 0.00 0.00 0.00 4.79
9274 18299 5.989477 TCAATACACCAGAATCACTAAGGG 58.011 41.667 0.00 0.00 0.00 3.95
9275 18300 7.278868 GTCTTCAATACACCAGAATCACTAAGG 59.721 40.741 0.00 0.00 0.00 2.69
9276 18301 8.037758 AGTCTTCAATACACCAGAATCACTAAG 58.962 37.037 0.00 0.00 0.00 2.18
9277 18302 7.907389 AGTCTTCAATACACCAGAATCACTAA 58.093 34.615 0.00 0.00 0.00 2.24
9278 18303 7.482169 AGTCTTCAATACACCAGAATCACTA 57.518 36.000 0.00 0.00 0.00 2.74
9279 18304 6.365970 AGTCTTCAATACACCAGAATCACT 57.634 37.500 0.00 0.00 0.00 3.41
9280 18305 8.723942 ATAAGTCTTCAATACACCAGAATCAC 57.276 34.615 0.00 0.00 0.00 3.06
9282 18307 9.482627 CCTATAAGTCTTCAATACACCAGAATC 57.517 37.037 0.00 0.00 0.00 2.52
9283 18308 8.993424 ACCTATAAGTCTTCAATACACCAGAAT 58.007 33.333 0.00 0.00 0.00 2.40
9284 18309 8.375493 ACCTATAAGTCTTCAATACACCAGAA 57.625 34.615 0.00 0.00 0.00 3.02
9285 18310 7.973048 ACCTATAAGTCTTCAATACACCAGA 57.027 36.000 0.00 0.00 0.00 3.86
9288 18313 9.543783 CCTTAACCTATAAGTCTTCAATACACC 57.456 37.037 0.00 0.00 0.00 4.16
9289 18314 9.543783 CCCTTAACCTATAAGTCTTCAATACAC 57.456 37.037 0.00 0.00 0.00 2.90
9290 18315 9.496710 TCCCTTAACCTATAAGTCTTCAATACA 57.503 33.333 0.00 0.00 0.00 2.29
9291 18316 9.761504 GTCCCTTAACCTATAAGTCTTCAATAC 57.238 37.037 0.00 0.00 0.00 1.89
9292 18317 9.725206 AGTCCCTTAACCTATAAGTCTTCAATA 57.275 33.333 0.00 0.00 0.00 1.90
9293 18318 8.625467 AGTCCCTTAACCTATAAGTCTTCAAT 57.375 34.615 0.00 0.00 0.00 2.57
9294 18319 9.551339 TTAGTCCCTTAACCTATAAGTCTTCAA 57.449 33.333 0.00 0.00 0.00 2.69
9295 18320 9.725206 ATTAGTCCCTTAACCTATAAGTCTTCA 57.275 33.333 0.00 0.00 0.00 3.02
9296 18321 9.984190 CATTAGTCCCTTAACCTATAAGTCTTC 57.016 37.037 0.00 0.00 0.00 2.87
9297 18322 8.430431 GCATTAGTCCCTTAACCTATAAGTCTT 58.570 37.037 0.00 0.00 0.00 3.01
9298 18323 7.255871 CGCATTAGTCCCTTAACCTATAAGTCT 60.256 40.741 0.00 0.00 0.00 3.24
9299 18324 6.867293 CGCATTAGTCCCTTAACCTATAAGTC 59.133 42.308 0.00 0.00 0.00 3.01
9300 18325 6.325804 ACGCATTAGTCCCTTAACCTATAAGT 59.674 38.462 0.00 0.00 0.00 2.24
9301 18326 6.756221 ACGCATTAGTCCCTTAACCTATAAG 58.244 40.000 0.00 0.00 0.00 1.73
9302 18327 6.736110 ACGCATTAGTCCCTTAACCTATAA 57.264 37.500 0.00 0.00 0.00 0.98
9303 18328 6.736110 AACGCATTAGTCCCTTAACCTATA 57.264 37.500 0.00 0.00 0.00 1.31
9304 18329 5.625568 AACGCATTAGTCCCTTAACCTAT 57.374 39.130 0.00 0.00 0.00 2.57
9305 18330 5.180271 CAAACGCATTAGTCCCTTAACCTA 58.820 41.667 0.00 0.00 0.00 3.08
9306 18331 3.994931 AACGCATTAGTCCCTTAACCT 57.005 42.857 0.00 0.00 0.00 3.50
9307 18332 3.754850 ACAAACGCATTAGTCCCTTAACC 59.245 43.478 0.00 0.00 0.00 2.85
9308 18333 4.453136 TCACAAACGCATTAGTCCCTTAAC 59.547 41.667 0.00 0.00 0.00 2.01
9309 18334 4.643463 TCACAAACGCATTAGTCCCTTAA 58.357 39.130 0.00 0.00 0.00 1.85
9310 18335 4.250464 CTCACAAACGCATTAGTCCCTTA 58.750 43.478 0.00 0.00 0.00 2.69
9311 18336 3.074412 CTCACAAACGCATTAGTCCCTT 58.926 45.455 0.00 0.00 0.00 3.95
9312 18337 2.038557 ACTCACAAACGCATTAGTCCCT 59.961 45.455 0.00 0.00 0.00 4.20
9313 18338 2.159627 CACTCACAAACGCATTAGTCCC 59.840 50.000 0.00 0.00 0.00 4.46
9314 18339 2.806244 ACACTCACAAACGCATTAGTCC 59.194 45.455 0.00 0.00 0.00 3.85
9315 18340 4.446385 TGTACACTCACAAACGCATTAGTC 59.554 41.667 0.00 0.00 0.00 2.59
9316 18341 4.210537 GTGTACACTCACAAACGCATTAGT 59.789 41.667 18.92 0.00 38.12 2.24
9317 18342 4.210328 TGTGTACACTCACAAACGCATTAG 59.790 41.667 25.60 0.00 43.92 1.73
9318 18343 4.120589 TGTGTACACTCACAAACGCATTA 58.879 39.130 25.60 0.00 43.92 1.90
9319 18344 2.939756 TGTGTACACTCACAAACGCATT 59.060 40.909 25.60 0.00 43.92 3.56
9320 18345 2.543848 CTGTGTACACTCACAAACGCAT 59.456 45.455 25.60 0.00 45.70 4.73
9321 18346 1.930503 CTGTGTACACTCACAAACGCA 59.069 47.619 25.60 1.63 45.70 5.24
9322 18347 1.260561 CCTGTGTACACTCACAAACGC 59.739 52.381 25.60 0.00 45.70 4.84
9323 18348 2.538449 GACCTGTGTACACTCACAAACG 59.462 50.000 25.60 7.41 45.70 3.60
9324 18349 3.793559 AGACCTGTGTACACTCACAAAC 58.206 45.455 25.60 11.05 45.70 2.93
9325 18350 5.801531 ATAGACCTGTGTACACTCACAAA 57.198 39.130 25.60 8.96 45.70 2.83
9326 18351 6.492429 ACTTATAGACCTGTGTACACTCACAA 59.508 38.462 25.60 5.22 45.70 3.33
9327 18352 6.008331 ACTTATAGACCTGTGTACACTCACA 58.992 40.000 25.60 5.66 44.54 3.58
9328 18353 6.374894 AGACTTATAGACCTGTGTACACTCAC 59.625 42.308 25.60 14.26 38.63 3.51
9329 18354 6.482524 AGACTTATAGACCTGTGTACACTCA 58.517 40.000 25.60 6.77 0.00 3.41
9330 18355 8.680039 ATAGACTTATAGACCTGTGTACACTC 57.320 38.462 25.60 15.39 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.