Multiple sequence alignment - TraesCS3A01G259400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G259400 chr3A 100.000 3437 0 0 1683 5119 481873626 481877062 0.000000e+00 6348.0
1 TraesCS3A01G259400 chr3A 100.000 830 0 0 682 1511 481872625 481873454 0.000000e+00 1533.0
2 TraesCS3A01G259400 chr3A 100.000 339 0 0 1 339 481871944 481872282 1.210000e-175 627.0
3 TraesCS3A01G259400 chr3A 85.484 124 13 3 1392 1511 171498750 171498628 1.940000e-24 124.0
4 TraesCS3A01G259400 chr3D 93.233 1522 66 12 3625 5119 361372710 361374221 0.000000e+00 2206.0
5 TraesCS3A01G259400 chr3D 93.950 876 47 6 2686 3559 361371335 361372206 0.000000e+00 1319.0
6 TraesCS3A01G259400 chr3D 97.519 645 16 0 733 1377 361369072 361369716 0.000000e+00 1103.0
7 TraesCS3A01G259400 chr3D 85.671 656 54 15 1875 2519 361369759 361370385 0.000000e+00 654.0
8 TraesCS3A01G259400 chr3D 95.280 339 9 2 2 339 361368231 361368563 9.760000e-147 531.0
9 TraesCS3A01G259400 chr3D 84.706 170 15 7 1699 1868 574574300 574574142 5.310000e-35 159.0
10 TraesCS3A01G259400 chr3D 82.682 179 21 4 1693 1868 108966400 108966229 3.190000e-32 150.0
11 TraesCS3A01G259400 chr3D 97.222 36 0 1 2649 2684 352110641 352110675 5.540000e-05 60.2
12 TraesCS3A01G259400 chr3D 88.000 50 5 1 2638 2686 483176097 483176048 1.990000e-04 58.4
13 TraesCS3A01G259400 chr3B 92.060 1524 81 14 3625 5119 470852470 470853982 0.000000e+00 2108.0
14 TraesCS3A01G259400 chr3B 93.016 902 55 5 2686 3585 470850930 470851825 0.000000e+00 1310.0
15 TraesCS3A01G259400 chr3B 95.619 662 17 1 717 1378 470848474 470849123 0.000000e+00 1051.0
16 TraesCS3A01G259400 chr3B 94.477 344 13 3 1 339 470847556 470847898 4.540000e-145 525.0
17 TraesCS3A01G259400 chr3B 87.302 441 42 8 1874 2307 470849164 470849597 4.610000e-135 492.0
18 TraesCS3A01G259400 chr3B 86.145 332 33 9 2337 2657 470850604 470850933 3.790000e-91 346.0
19 TraesCS3A01G259400 chr3B 86.979 192 19 3 3396 3585 53553308 53553495 1.440000e-50 211.0
20 TraesCS3A01G259400 chr3B 94.737 38 2 0 2648 2685 8152222 8152185 5.540000e-05 60.2
21 TraesCS3A01G259400 chr2D 84.153 183 21 3 1683 1865 553280724 553280898 2.450000e-38 171.0
22 TraesCS3A01G259400 chr2D 86.364 66 7 1 5054 5119 421794825 421794762 2.560000e-08 71.3
23 TraesCS3A01G259400 chr2D 100.000 33 0 0 2653 2685 382455933 382455965 1.540000e-05 62.1
24 TraesCS3A01G259400 chr1A 83.957 187 20 7 1683 1868 76723039 76723216 2.450000e-38 171.0
25 TraesCS3A01G259400 chr1A 85.039 127 15 4 1388 1511 76722852 76722977 5.380000e-25 126.0
26 TraesCS3A01G259400 chr6A 84.091 176 18 6 1693 1868 263890613 263890448 1.480000e-35 161.0
27 TraesCS3A01G259400 chr6A 88.182 110 11 2 1403 1511 263890793 263890685 4.160000e-26 130.0
28 TraesCS3A01G259400 chr6A 94.828 58 3 0 5053 5110 63566330 63566387 1.960000e-14 91.6
29 TraesCS3A01G259400 chr2B 83.060 183 23 4 1683 1865 659019703 659019877 5.310000e-35 159.0
30 TraesCS3A01G259400 chr4D 85.811 148 13 3 1725 1872 447748185 447748324 3.190000e-32 150.0
31 TraesCS3A01G259400 chr6D 90.826 109 10 0 1403 1511 221846943 221846835 4.130000e-31 147.0
32 TraesCS3A01G259400 chr6D 89.855 69 6 1 5052 5119 9355459 9355391 2.540000e-13 87.9
33 TraesCS3A01G259400 chr4A 90.179 112 11 0 1400 1511 743560960 743561071 4.130000e-31 147.0
34 TraesCS3A01G259400 chr4A 93.443 61 4 0 5052 5112 514080021 514080081 1.960000e-14 91.6
35 TraesCS3A01G259400 chr1B 89.908 109 11 0 1403 1511 362309696 362309804 1.920000e-29 141.0
36 TraesCS3A01G259400 chr1B 91.304 46 3 1 2641 2685 70315157 70315112 1.540000e-05 62.1
37 TraesCS3A01G259400 chr1B 94.737 38 1 1 2648 2685 396533472 396533508 1.990000e-04 58.4
38 TraesCS3A01G259400 chr1D 88.991 109 12 0 1403 1511 4570350 4570458 8.940000e-28 135.0
39 TraesCS3A01G259400 chr5B 81.609 174 19 7 1694 1865 14913097 14912935 1.160000e-26 132.0
40 TraesCS3A01G259400 chr6B 84.921 126 17 2 1388 1511 159134363 159134238 5.380000e-25 126.0
41 TraesCS3A01G259400 chr7D 81.437 167 17 8 1702 1868 88198848 88198696 1.940000e-24 124.0
42 TraesCS3A01G259400 chr7D 90.909 44 3 1 2643 2685 20064683 20064726 1.990000e-04 58.4
43 TraesCS3A01G259400 chr7B 87.156 109 14 0 1403 1511 11228947 11228839 1.940000e-24 124.0
44 TraesCS3A01G259400 chr7A 91.176 68 6 0 5052 5119 252538506 252538439 5.460000e-15 93.5
45 TraesCS3A01G259400 chr5D 87.143 70 8 1 5050 5119 341034424 341034356 1.530000e-10 78.7
46 TraesCS3A01G259400 chr5D 100.000 33 0 0 2653 2685 51811456 51811488 1.540000e-05 62.1
47 TraesCS3A01G259400 chr5D 92.683 41 1 2 2653 2691 449691987 449692027 1.990000e-04 58.4
48 TraesCS3A01G259400 chrUn 91.071 56 5 0 5053 5108 373420142 373420087 5.500000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G259400 chr3A 481871944 481877062 5118 False 2836.0 6348 100.0000 1 5119 3 chr3A.!!$F1 5118
1 TraesCS3A01G259400 chr3D 361368231 361374221 5990 False 1162.6 2206 93.1306 2 5119 5 chr3D.!!$F2 5117
2 TraesCS3A01G259400 chr3B 470847556 470853982 6426 False 972.0 2108 91.4365 1 5119 6 chr3B.!!$F2 5118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 1507 2.185608 GTGGCGCTTCTCTCCCTC 59.814 66.667 7.64 0.0 0.00 4.30 F
1506 2047 0.031994 CCTTTTGGACTTGGCAACGG 59.968 55.000 0.00 0.0 44.07 4.44 F
1764 2305 0.038159 CCGACTATCTTGGGATCGGC 60.038 60.000 0.00 0.0 32.72 5.54 F
1777 2318 0.101219 GATCGGCATTGTTTGAGGGC 59.899 55.000 0.00 0.0 0.00 5.19 F
1821 2362 0.249405 TTCGGCCGTGTACTTCGTTT 60.249 50.000 27.15 0.0 0.00 3.60 F
2834 5183 0.468226 TGGTTCCTTTCAGACACGCT 59.532 50.000 0.00 0.0 0.00 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 2343 0.249405 AAACGAAGTACACGGCCGAA 60.249 50.000 35.90 14.32 45.0 4.30 R
3411 5760 0.176219 ACATCAAATGCCGGCAATGG 59.824 50.000 36.33 24.62 0.0 3.16 R
3602 6441 4.876107 ACTTCAATAGGCGGTACATTTCAG 59.124 41.667 0.00 0.00 0.0 3.02 R
3776 6730 4.118168 ACCAAATGAACTCACTCCCATT 57.882 40.909 0.00 0.00 0.0 3.16 R
3778 6732 3.593442 AACCAAATGAACTCACTCCCA 57.407 42.857 0.00 0.00 0.0 4.37 R
4291 7251 0.036164 TCATTGAACCCACCCTGTCG 59.964 55.000 0.00 0.00 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 150 5.398603 ACATTATCTAAGCCATCGAGGAG 57.601 43.478 0.00 0.00 41.22 3.69
708 715 4.039092 CCAGCTCCCACCCCTGTG 62.039 72.222 0.00 0.00 42.39 3.66
966 1507 2.185608 GTGGCGCTTCTCTCCCTC 59.814 66.667 7.64 0.00 0.00 4.30
1179 1720 1.074850 GAGGGAGAAGGAGGGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
1181 1722 1.162951 AGGGAGAAGGAGGGGAGGAA 61.163 60.000 0.00 0.00 0.00 3.36
1218 1759 2.511659 TCAGCAAAGAAGAGCTTGCAT 58.488 42.857 8.43 0.00 39.50 3.96
1224 1765 5.242393 AGCAAAGAAGAGCTTGCATAAGAAA 59.758 36.000 8.43 0.00 38.01 2.52
1254 1795 2.040145 TCTGAATGGACTGATTGTGCCA 59.960 45.455 0.00 0.00 36.06 4.92
1292 1833 2.660064 CCCGAGGTGGTCAAGGAGG 61.660 68.421 0.00 0.00 35.15 4.30
1319 1860 3.522553 CTTCCGACTGTGAGTATTTCCC 58.477 50.000 0.00 0.00 0.00 3.97
1378 1919 8.226448 CAGACAATCAAAGAACTAGCACTAAAG 58.774 37.037 0.00 0.00 0.00 1.85
1379 1920 7.934120 AGACAATCAAAGAACTAGCACTAAAGT 59.066 33.333 0.00 0.00 0.00 2.66
1380 1921 9.204570 GACAATCAAAGAACTAGCACTAAAGTA 57.795 33.333 0.00 0.00 0.00 2.24
1381 1922 9.555727 ACAATCAAAGAACTAGCACTAAAGTAA 57.444 29.630 0.00 0.00 0.00 2.24
1393 1934 4.791676 GCACTAAAGTAATTAGGTTTGCGC 59.208 41.667 0.00 0.00 44.49 6.09
1394 1935 5.391629 GCACTAAAGTAATTAGGTTTGCGCT 60.392 40.000 9.73 0.00 44.49 5.92
1395 1936 6.608610 CACTAAAGTAATTAGGTTTGCGCTT 58.391 36.000 9.73 0.00 44.49 4.68
1396 1937 6.741358 CACTAAAGTAATTAGGTTTGCGCTTC 59.259 38.462 9.73 0.00 44.49 3.86
1397 1938 4.336532 AAGTAATTAGGTTTGCGCTTCG 57.663 40.909 9.73 0.00 0.00 3.79
1400 1941 0.719465 ATTAGGTTTGCGCTTCGTCG 59.281 50.000 9.73 0.00 0.00 5.12
1428 1969 2.965462 CGGGCGCCGTTATCTTCC 60.965 66.667 22.54 1.28 42.73 3.46
1429 1970 2.504519 GGGCGCCGTTATCTTCCT 59.495 61.111 22.54 0.00 0.00 3.36
1430 1971 1.887707 GGGCGCCGTTATCTTCCTG 60.888 63.158 22.54 0.00 0.00 3.86
1431 1972 1.143183 GGCGCCGTTATCTTCCTGA 59.857 57.895 12.58 0.00 0.00 3.86
1432 1973 0.461339 GGCGCCGTTATCTTCCTGAA 60.461 55.000 12.58 0.00 0.00 3.02
1433 1974 0.931005 GCGCCGTTATCTTCCTGAAG 59.069 55.000 0.00 0.31 39.71 3.02
1442 1983 2.417339 TCTTCCTGAAGACGTTGTCG 57.583 50.000 5.50 0.00 42.06 4.35
1452 1993 2.029073 CGTTGTCGTGGTGCTCCT 59.971 61.111 6.34 0.00 34.23 3.69
1453 1994 2.022129 CGTTGTCGTGGTGCTCCTC 61.022 63.158 6.34 1.30 34.23 3.71
1454 1995 1.367840 GTTGTCGTGGTGCTCCTCT 59.632 57.895 6.34 0.00 34.23 3.69
1455 1996 0.946221 GTTGTCGTGGTGCTCCTCTG 60.946 60.000 6.34 0.12 34.23 3.35
1456 1997 2.433318 GTCGTGGTGCTCCTCTGC 60.433 66.667 6.34 0.00 34.23 4.26
1457 1998 4.056125 TCGTGGTGCTCCTCTGCG 62.056 66.667 6.34 5.95 35.36 5.18
1458 1999 4.363990 CGTGGTGCTCCTCTGCGT 62.364 66.667 6.34 0.00 35.36 5.24
1459 2000 2.740055 GTGGTGCTCCTCTGCGTG 60.740 66.667 6.34 0.00 35.36 5.34
1460 2001 4.687215 TGGTGCTCCTCTGCGTGC 62.687 66.667 6.34 0.00 35.36 5.34
1462 2003 4.687215 GTGCTCCTCTGCGTGCCA 62.687 66.667 0.00 0.00 35.36 4.92
1463 2004 4.383861 TGCTCCTCTGCGTGCCAG 62.384 66.667 0.00 0.00 43.17 4.85
1465 2006 4.463879 CTCCTCTGCGTGCCAGGG 62.464 72.222 7.01 0.00 42.00 4.45
1467 2008 4.335647 CCTCTGCGTGCCAGGGTT 62.336 66.667 0.00 0.00 40.66 4.11
1468 2009 2.743928 CTCTGCGTGCCAGGGTTC 60.744 66.667 0.00 0.00 42.05 3.62
1469 2010 4.329545 TCTGCGTGCCAGGGTTCC 62.330 66.667 0.00 0.00 42.05 3.62
1476 2017 3.961414 GCCAGGGTTCCGGGTGAA 61.961 66.667 0.00 0.00 40.98 3.18
1477 2018 2.351276 CCAGGGTTCCGGGTGAAG 59.649 66.667 0.00 0.00 34.16 3.02
1478 2019 2.221299 CCAGGGTTCCGGGTGAAGA 61.221 63.158 0.00 0.00 34.16 2.87
1479 2020 1.003718 CAGGGTTCCGGGTGAAGAC 60.004 63.158 0.00 0.00 32.37 3.01
1480 2021 2.222013 AGGGTTCCGGGTGAAGACC 61.222 63.158 0.00 0.49 42.27 3.85
1490 2031 2.658807 GGTGAAGACCCTTGTTCCTT 57.341 50.000 0.00 0.00 36.03 3.36
1491 2032 2.945456 GGTGAAGACCCTTGTTCCTTT 58.055 47.619 0.00 0.00 36.03 3.11
1492 2033 3.296854 GGTGAAGACCCTTGTTCCTTTT 58.703 45.455 0.00 0.00 36.03 2.27
1493 2034 3.068165 GGTGAAGACCCTTGTTCCTTTTG 59.932 47.826 0.00 0.00 36.03 2.44
1494 2035 3.068165 GTGAAGACCCTTGTTCCTTTTGG 59.932 47.826 0.00 0.00 42.21 3.28
1505 2046 1.028905 TCCTTTTGGACTTGGCAACG 58.971 50.000 0.00 0.00 45.19 4.10
1506 2047 0.031994 CCTTTTGGACTTGGCAACGG 59.968 55.000 0.00 0.00 44.07 4.44
1507 2048 0.597377 CTTTTGGACTTGGCAACGGC 60.597 55.000 0.00 0.00 42.51 5.68
1508 2049 2.343163 TTTTGGACTTGGCAACGGCG 62.343 55.000 4.80 4.80 42.47 6.46
1509 2050 3.758973 TTGGACTTGGCAACGGCGA 62.759 57.895 16.62 0.00 42.47 5.54
1510 2051 3.723348 GGACTTGGCAACGGCGAC 61.723 66.667 16.62 1.71 42.47 5.19
1699 2240 4.268687 GTAGCGCTGCACTCAGTT 57.731 55.556 22.90 0.00 42.29 3.16
1700 2241 2.533318 GTAGCGCTGCACTCAGTTT 58.467 52.632 22.90 0.00 42.29 2.66
1701 2242 0.868406 GTAGCGCTGCACTCAGTTTT 59.132 50.000 22.90 0.00 42.29 2.43
1702 2243 1.136224 GTAGCGCTGCACTCAGTTTTC 60.136 52.381 22.90 0.00 42.29 2.29
1703 2244 1.081840 GCGCTGCACTCAGTTTTCC 60.082 57.895 0.00 0.00 42.29 3.13
1704 2245 1.576421 CGCTGCACTCAGTTTTCCC 59.424 57.895 0.00 0.00 42.29 3.97
1705 2246 1.165907 CGCTGCACTCAGTTTTCCCA 61.166 55.000 0.00 0.00 42.29 4.37
1706 2247 1.032014 GCTGCACTCAGTTTTCCCAA 58.968 50.000 0.00 0.00 42.29 4.12
1707 2248 1.615392 GCTGCACTCAGTTTTCCCAAT 59.385 47.619 0.00 0.00 42.29 3.16
1708 2249 2.608752 GCTGCACTCAGTTTTCCCAATG 60.609 50.000 0.00 0.00 42.29 2.82
1709 2250 1.340889 TGCACTCAGTTTTCCCAATGC 59.659 47.619 0.00 0.00 0.00 3.56
1710 2251 1.615392 GCACTCAGTTTTCCCAATGCT 59.385 47.619 0.00 0.00 0.00 3.79
1711 2252 2.036346 GCACTCAGTTTTCCCAATGCTT 59.964 45.455 0.00 0.00 0.00 3.91
1712 2253 3.493176 GCACTCAGTTTTCCCAATGCTTT 60.493 43.478 0.00 0.00 0.00 3.51
1713 2254 4.301628 CACTCAGTTTTCCCAATGCTTTC 58.698 43.478 0.00 0.00 0.00 2.62
1714 2255 4.038402 CACTCAGTTTTCCCAATGCTTTCT 59.962 41.667 0.00 0.00 0.00 2.52
1715 2256 4.651045 ACTCAGTTTTCCCAATGCTTTCTT 59.349 37.500 0.00 0.00 0.00 2.52
1716 2257 5.129320 ACTCAGTTTTCCCAATGCTTTCTTT 59.871 36.000 0.00 0.00 0.00 2.52
1717 2258 5.988287 TCAGTTTTCCCAATGCTTTCTTTT 58.012 33.333 0.00 0.00 0.00 2.27
1718 2259 5.816777 TCAGTTTTCCCAATGCTTTCTTTTG 59.183 36.000 0.00 0.00 0.00 2.44
1719 2260 5.007921 CAGTTTTCCCAATGCTTTCTTTTGG 59.992 40.000 0.00 0.00 39.69 3.28
1720 2261 4.769345 TTTCCCAATGCTTTCTTTTGGT 57.231 36.364 0.00 0.00 38.58 3.67
1721 2262 5.878406 TTTCCCAATGCTTTCTTTTGGTA 57.122 34.783 0.00 0.00 38.58 3.25
1722 2263 5.467035 TTCCCAATGCTTTCTTTTGGTAG 57.533 39.130 0.00 0.00 38.58 3.18
1723 2264 3.258123 TCCCAATGCTTTCTTTTGGTAGC 59.742 43.478 0.00 0.00 38.58 3.58
1724 2265 3.244976 CCAATGCTTTCTTTTGGTAGCG 58.755 45.455 0.00 0.00 36.08 4.26
1725 2266 3.305335 CCAATGCTTTCTTTTGGTAGCGT 60.305 43.478 0.00 0.00 36.08 5.07
1726 2267 4.083003 CCAATGCTTTCTTTTGGTAGCGTA 60.083 41.667 0.00 0.00 36.08 4.42
1727 2268 4.946784 ATGCTTTCTTTTGGTAGCGTAG 57.053 40.909 0.00 0.00 36.43 3.51
1728 2269 3.735591 TGCTTTCTTTTGGTAGCGTAGT 58.264 40.909 0.00 0.00 36.43 2.73
1729 2270 3.744426 TGCTTTCTTTTGGTAGCGTAGTC 59.256 43.478 0.00 0.00 36.43 2.59
1730 2271 3.181533 GCTTTCTTTTGGTAGCGTAGTCG 60.182 47.826 0.00 0.00 40.37 4.18
1731 2272 3.648339 TTCTTTTGGTAGCGTAGTCGT 57.352 42.857 0.00 0.00 39.49 4.34
1732 2273 4.764679 TTCTTTTGGTAGCGTAGTCGTA 57.235 40.909 0.00 0.00 39.49 3.43
1733 2274 4.083581 TCTTTTGGTAGCGTAGTCGTAC 57.916 45.455 0.00 0.00 39.49 3.67
1734 2275 3.753272 TCTTTTGGTAGCGTAGTCGTACT 59.247 43.478 0.00 0.00 39.49 2.73
1735 2276 4.216257 TCTTTTGGTAGCGTAGTCGTACTT 59.784 41.667 0.00 0.00 39.49 2.24
1736 2277 3.747099 TTGGTAGCGTAGTCGTACTTC 57.253 47.619 0.00 0.00 39.49 3.01
1737 2278 2.977914 TGGTAGCGTAGTCGTACTTCT 58.022 47.619 0.00 0.00 39.49 2.85
1738 2279 2.674852 TGGTAGCGTAGTCGTACTTCTG 59.325 50.000 0.00 0.00 39.49 3.02
1739 2280 2.538535 GGTAGCGTAGTCGTACTTCTGC 60.539 54.545 0.00 0.00 39.49 4.26
1740 2281 1.451067 AGCGTAGTCGTACTTCTGCT 58.549 50.000 0.00 0.00 39.49 4.24
1741 2282 1.811359 AGCGTAGTCGTACTTCTGCTT 59.189 47.619 0.00 0.00 39.49 3.91
1742 2283 1.912110 GCGTAGTCGTACTTCTGCTTG 59.088 52.381 0.00 0.00 39.49 4.01
1743 2284 2.413765 GCGTAGTCGTACTTCTGCTTGA 60.414 50.000 0.00 0.00 39.49 3.02
1744 2285 3.731264 GCGTAGTCGTACTTCTGCTTGAT 60.731 47.826 0.00 0.00 39.49 2.57
1745 2286 4.029704 CGTAGTCGTACTTCTGCTTGATC 58.970 47.826 0.00 0.00 0.00 2.92
1746 2287 3.512033 AGTCGTACTTCTGCTTGATCC 57.488 47.619 0.00 0.00 0.00 3.36
1747 2288 2.159366 AGTCGTACTTCTGCTTGATCCG 60.159 50.000 0.00 0.00 0.00 4.18
1748 2289 2.089201 TCGTACTTCTGCTTGATCCGA 58.911 47.619 0.00 0.00 0.00 4.55
1749 2290 2.159421 TCGTACTTCTGCTTGATCCGAC 60.159 50.000 0.00 0.00 0.00 4.79
1750 2291 2.159366 CGTACTTCTGCTTGATCCGACT 60.159 50.000 0.00 0.00 0.00 4.18
1751 2292 3.064958 CGTACTTCTGCTTGATCCGACTA 59.935 47.826 0.00 0.00 0.00 2.59
1752 2293 4.261238 CGTACTTCTGCTTGATCCGACTAT 60.261 45.833 0.00 0.00 0.00 2.12
1753 2294 4.314740 ACTTCTGCTTGATCCGACTATC 57.685 45.455 0.00 0.00 0.00 2.08
1754 2295 3.957497 ACTTCTGCTTGATCCGACTATCT 59.043 43.478 0.00 0.00 0.00 1.98
1755 2296 4.404073 ACTTCTGCTTGATCCGACTATCTT 59.596 41.667 0.00 0.00 0.00 2.40
1756 2297 4.313277 TCTGCTTGATCCGACTATCTTG 57.687 45.455 0.00 0.00 0.00 3.02
1757 2298 3.068732 TCTGCTTGATCCGACTATCTTGG 59.931 47.826 0.00 0.00 0.00 3.61
1758 2299 2.103094 TGCTTGATCCGACTATCTTGGG 59.897 50.000 0.00 0.00 0.00 4.12
1759 2300 2.365617 GCTTGATCCGACTATCTTGGGA 59.634 50.000 0.00 0.00 0.00 4.37
1760 2301 3.007398 GCTTGATCCGACTATCTTGGGAT 59.993 47.826 0.00 0.00 41.83 3.85
1762 2303 3.495670 GATCCGACTATCTTGGGATCG 57.504 52.381 3.42 0.00 43.79 3.69
1763 2304 1.617322 TCCGACTATCTTGGGATCGG 58.383 55.000 4.63 4.63 37.85 4.18
1764 2305 0.038159 CCGACTATCTTGGGATCGGC 60.038 60.000 0.00 0.00 32.72 5.54
1765 2306 0.673985 CGACTATCTTGGGATCGGCA 59.326 55.000 0.00 0.00 33.71 5.69
1766 2307 1.273606 CGACTATCTTGGGATCGGCAT 59.726 52.381 0.00 0.00 33.71 4.40
1767 2308 2.289072 CGACTATCTTGGGATCGGCATT 60.289 50.000 0.00 0.00 33.71 3.56
1768 2309 3.070018 GACTATCTTGGGATCGGCATTG 58.930 50.000 0.00 0.00 33.71 2.82
1769 2310 2.439507 ACTATCTTGGGATCGGCATTGT 59.560 45.455 0.00 0.00 33.71 2.71
1770 2311 2.442236 ATCTTGGGATCGGCATTGTT 57.558 45.000 0.00 0.00 0.00 2.83
1771 2312 2.214376 TCTTGGGATCGGCATTGTTT 57.786 45.000 0.00 0.00 0.00 2.83
1772 2313 1.818060 TCTTGGGATCGGCATTGTTTG 59.182 47.619 0.00 0.00 0.00 2.93
1773 2314 1.818060 CTTGGGATCGGCATTGTTTGA 59.182 47.619 0.00 0.00 0.00 2.69
1774 2315 1.462616 TGGGATCGGCATTGTTTGAG 58.537 50.000 0.00 0.00 0.00 3.02
1775 2316 0.740737 GGGATCGGCATTGTTTGAGG 59.259 55.000 0.00 0.00 0.00 3.86
1776 2317 0.740737 GGATCGGCATTGTTTGAGGG 59.259 55.000 0.00 0.00 0.00 4.30
1777 2318 0.101219 GATCGGCATTGTTTGAGGGC 59.899 55.000 0.00 0.00 0.00 5.19
1778 2319 0.323725 ATCGGCATTGTTTGAGGGCT 60.324 50.000 0.00 0.00 0.00 5.19
1779 2320 0.326595 TCGGCATTGTTTGAGGGCTA 59.673 50.000 0.00 0.00 0.00 3.93
1780 2321 0.451783 CGGCATTGTTTGAGGGCTAC 59.548 55.000 0.00 0.00 0.00 3.58
1781 2322 0.817654 GGCATTGTTTGAGGGCTACC 59.182 55.000 0.00 0.00 0.00 3.18
1782 2323 0.817654 GCATTGTTTGAGGGCTACCC 59.182 55.000 0.00 0.00 45.90 3.69
1792 2333 4.986467 GGCTACCCCACCATCTTG 57.014 61.111 0.00 0.00 0.00 3.02
1793 2334 1.999346 GGCTACCCCACCATCTTGT 59.001 57.895 0.00 0.00 0.00 3.16
1794 2335 1.209621 GGCTACCCCACCATCTTGTA 58.790 55.000 0.00 0.00 0.00 2.41
1795 2336 1.774856 GGCTACCCCACCATCTTGTAT 59.225 52.381 0.00 0.00 0.00 2.29
1796 2337 2.224548 GGCTACCCCACCATCTTGTATC 60.225 54.545 0.00 0.00 0.00 2.24
1797 2338 2.548067 GCTACCCCACCATCTTGTATCG 60.548 54.545 0.00 0.00 0.00 2.92
1798 2339 1.580059 ACCCCACCATCTTGTATCGT 58.420 50.000 0.00 0.00 0.00 3.73
1799 2340 1.913419 ACCCCACCATCTTGTATCGTT 59.087 47.619 0.00 0.00 0.00 3.85
1800 2341 2.093128 ACCCCACCATCTTGTATCGTTC 60.093 50.000 0.00 0.00 0.00 3.95
1801 2342 2.201732 CCCACCATCTTGTATCGTTCG 58.798 52.381 0.00 0.00 0.00 3.95
1802 2343 2.418197 CCCACCATCTTGTATCGTTCGT 60.418 50.000 0.00 0.00 0.00 3.85
1803 2344 3.259064 CCACCATCTTGTATCGTTCGTT 58.741 45.455 0.00 0.00 0.00 3.85
1804 2345 3.306166 CCACCATCTTGTATCGTTCGTTC 59.694 47.826 0.00 0.00 0.00 3.95
1805 2346 3.001070 CACCATCTTGTATCGTTCGTTCG 60.001 47.826 0.00 0.00 0.00 3.95
1806 2347 2.534349 CCATCTTGTATCGTTCGTTCGG 59.466 50.000 2.85 0.00 0.00 4.30
1807 2348 1.621107 TCTTGTATCGTTCGTTCGGC 58.379 50.000 2.85 0.00 0.00 5.54
1808 2349 0.643820 CTTGTATCGTTCGTTCGGCC 59.356 55.000 0.00 0.00 0.00 6.13
1809 2350 1.072116 TTGTATCGTTCGTTCGGCCG 61.072 55.000 22.12 22.12 0.00 6.13
1810 2351 1.514873 GTATCGTTCGTTCGGCCGT 60.515 57.895 27.15 4.43 0.00 5.68
1811 2352 1.514657 TATCGTTCGTTCGGCCGTG 60.515 57.895 27.15 16.45 0.00 4.94
1812 2353 2.198906 TATCGTTCGTTCGGCCGTGT 62.199 55.000 27.15 2.79 0.00 4.49
1813 2354 2.198906 ATCGTTCGTTCGGCCGTGTA 62.199 55.000 27.15 9.28 0.00 2.90
1814 2355 2.709999 CGTTCGTTCGGCCGTGTAC 61.710 63.158 27.15 19.67 0.00 2.90
1815 2356 1.372128 GTTCGTTCGGCCGTGTACT 60.372 57.895 27.15 0.00 0.00 2.73
1816 2357 0.940991 GTTCGTTCGGCCGTGTACTT 60.941 55.000 27.15 0.00 0.00 2.24
1817 2358 0.664166 TTCGTTCGGCCGTGTACTTC 60.664 55.000 27.15 7.81 0.00 3.01
1818 2359 2.430942 CGTTCGGCCGTGTACTTCG 61.431 63.158 27.15 15.38 0.00 3.79
1819 2360 1.372128 GTTCGGCCGTGTACTTCGT 60.372 57.895 27.15 0.00 0.00 3.85
1820 2361 0.940991 GTTCGGCCGTGTACTTCGTT 60.941 55.000 27.15 0.00 0.00 3.85
1821 2362 0.249405 TTCGGCCGTGTACTTCGTTT 60.249 50.000 27.15 0.00 0.00 3.60
1822 2363 0.940519 TCGGCCGTGTACTTCGTTTG 60.941 55.000 27.15 0.00 0.00 2.93
1823 2364 0.940519 CGGCCGTGTACTTCGTTTGA 60.941 55.000 19.50 0.00 0.00 2.69
1824 2365 1.435577 GGCCGTGTACTTCGTTTGAT 58.564 50.000 0.00 0.00 0.00 2.57
1825 2366 1.127951 GGCCGTGTACTTCGTTTGATG 59.872 52.381 0.00 0.00 0.00 3.07
1826 2367 1.796459 GCCGTGTACTTCGTTTGATGT 59.204 47.619 9.34 0.00 36.54 3.06
1827 2368 2.222445 GCCGTGTACTTCGTTTGATGTT 59.778 45.455 9.34 0.00 34.61 2.71
1828 2369 3.303526 GCCGTGTACTTCGTTTGATGTTT 60.304 43.478 9.34 0.00 34.61 2.83
1829 2370 4.451557 CCGTGTACTTCGTTTGATGTTTC 58.548 43.478 9.34 0.00 34.61 2.78
1830 2371 4.451557 CGTGTACTTCGTTTGATGTTTCC 58.548 43.478 0.00 0.00 34.61 3.13
1831 2372 4.210537 CGTGTACTTCGTTTGATGTTTCCT 59.789 41.667 0.00 0.00 34.61 3.36
1832 2373 5.277154 CGTGTACTTCGTTTGATGTTTCCTT 60.277 40.000 0.00 0.00 34.61 3.36
1833 2374 6.492254 GTGTACTTCGTTTGATGTTTCCTTT 58.508 36.000 0.00 0.00 34.61 3.11
1834 2375 7.517101 CGTGTACTTCGTTTGATGTTTCCTTTA 60.517 37.037 0.00 0.00 34.61 1.85
1835 2376 8.287503 GTGTACTTCGTTTGATGTTTCCTTTAT 58.712 33.333 0.00 0.00 34.61 1.40
1836 2377 8.842280 TGTACTTCGTTTGATGTTTCCTTTATT 58.158 29.630 0.00 0.00 34.61 1.40
1852 2393 8.741603 TTCCTTTATTATATATAAAGCGGGGC 57.258 34.615 9.20 0.00 39.20 5.80
1853 2394 6.987992 TCCTTTATTATATATAAAGCGGGGCG 59.012 38.462 9.20 0.00 39.20 6.13
1854 2395 6.987992 CCTTTATTATATATAAAGCGGGGCGA 59.012 38.462 9.20 0.00 39.20 5.54
1855 2396 7.496591 CCTTTATTATATATAAAGCGGGGCGAA 59.503 37.037 9.20 0.00 39.20 4.70
1856 2397 8.789825 TTTATTATATATAAAGCGGGGCGAAA 57.210 30.769 9.20 0.00 0.00 3.46
1857 2398 6.920569 ATTATATATAAAGCGGGGCGAAAG 57.079 37.500 9.20 0.00 0.00 2.62
1928 2469 4.539870 CAAAGGTGTGTCTTTGCTATGTG 58.460 43.478 4.70 0.00 44.44 3.21
1929 2470 3.769739 AGGTGTGTCTTTGCTATGTGA 57.230 42.857 0.00 0.00 0.00 3.58
1933 2474 4.083802 GGTGTGTCTTTGCTATGTGACTTC 60.084 45.833 0.00 0.00 0.00 3.01
1938 2479 7.278646 TGTGTCTTTGCTATGTGACTTCATATC 59.721 37.037 0.00 0.00 31.19 1.63
1939 2480 6.763135 TGTCTTTGCTATGTGACTTCATATCC 59.237 38.462 0.00 0.00 31.19 2.59
1965 2506 2.737252 GTTCACCTCGGATGTTCAAGAC 59.263 50.000 0.00 0.00 0.00 3.01
1973 2514 4.370049 TCGGATGTTCAAGACAACGTAAA 58.630 39.130 0.00 0.00 42.62 2.01
1982 2523 2.846193 AGACAACGTAAATGTGCCAGT 58.154 42.857 0.00 0.00 0.00 4.00
1996 2537 3.833650 TGTGCCAGTGGAAATGATGAAAT 59.166 39.130 15.20 0.00 30.28 2.17
2066 2607 9.165035 CATTGCAAACAAGGAATATTTGGTTAT 57.835 29.630 1.71 0.00 39.96 1.89
2106 2647 1.198759 GCCCCTCTAGTTGTCCCACA 61.199 60.000 0.00 0.00 0.00 4.17
2109 2650 1.978580 CCCTCTAGTTGTCCCACACTT 59.021 52.381 0.00 0.00 0.00 3.16
2115 2656 3.366052 AGTTGTCCCACACTTCACTTT 57.634 42.857 0.00 0.00 0.00 2.66
2133 2674 2.435372 TTCTGTTTGCTGGGTCAGTT 57.565 45.000 0.00 0.00 33.43 3.16
2146 2687 5.316987 CTGGGTCAGTTAATGGTCTTCTTT 58.683 41.667 0.00 0.00 0.00 2.52
2149 2695 6.264518 TGGGTCAGTTAATGGTCTTCTTTTTC 59.735 38.462 0.00 0.00 0.00 2.29
2172 2718 9.679661 TTTCATATATGACAGTAAAGGAGCAAA 57.320 29.630 15.10 0.00 36.36 3.68
2176 2722 3.820557 TGACAGTAAAGGAGCAAAAGCT 58.179 40.909 0.00 0.00 0.00 3.74
2261 2809 2.298335 ATCTCGGCCCCATTTTCCCC 62.298 60.000 0.00 0.00 0.00 4.81
2321 2869 7.122501 TGAATTGACTAATTTGCATCTAAGCCA 59.877 33.333 0.00 0.00 36.66 4.75
2366 3892 5.957798 TCCGTAGAGATAAACAACATTCGT 58.042 37.500 0.00 0.00 0.00 3.85
2371 3897 6.642683 AGAGATAAACAACATTCGTTACCG 57.357 37.500 0.00 0.00 32.75 4.02
2453 3979 6.617782 AGATATTGCTAGGTGCTCACATAT 57.382 37.500 2.21 0.00 43.37 1.78
2454 3980 6.404708 AGATATTGCTAGGTGCTCACATATG 58.595 40.000 0.00 0.00 43.37 1.78
2458 3984 2.289002 GCTAGGTGCTCACATATGTTGC 59.711 50.000 18.56 18.56 38.95 4.17
2475 4009 3.874543 TGTTGCGTGCCATATTTACTAGG 59.125 43.478 0.00 0.00 0.00 3.02
2497 4031 3.156293 ACTGTGCTGATGTAAATGGCAA 58.844 40.909 0.00 0.00 34.65 4.52
2507 4041 9.748708 GCTGATGTAAATGGCAAATAAATAGAA 57.251 29.630 0.00 0.00 0.00 2.10
2519 4053 8.613482 GGCAAATAAATAGAAGGTGAGTACTTC 58.387 37.037 0.00 0.00 43.56 3.01
2554 4903 1.293498 AGGTCCGTGCAGACATGAC 59.707 57.895 0.00 0.00 38.59 3.06
2574 4923 2.431057 ACGATCAATCCTGACCTGTACC 59.569 50.000 0.00 0.00 33.30 3.34
2592 4941 1.909302 ACCAGTACCAACATCTCCTGG 59.091 52.381 0.00 0.00 43.98 4.45
2626 4975 8.686334 TGATTTATTTCTTGAGCCAAATCTACC 58.314 33.333 0.00 0.00 34.82 3.18
2628 4977 2.024176 TCTTGAGCCAAATCTACCGC 57.976 50.000 0.00 0.00 0.00 5.68
2645 4994 3.549794 ACCGCGTAGGATTTCTAGTAGT 58.450 45.455 4.92 0.00 45.00 2.73
2647 4996 5.312079 ACCGCGTAGGATTTCTAGTAGTAT 58.688 41.667 4.92 0.00 45.00 2.12
2649 4998 7.108847 ACCGCGTAGGATTTCTAGTAGTATAT 58.891 38.462 4.92 0.00 45.00 0.86
2675 5024 8.773033 ATTAATAAGTACTCCCTCCGTAAAGA 57.227 34.615 0.00 0.00 0.00 2.52
2676 5025 8.593945 TTAATAAGTACTCCCTCCGTAAAGAA 57.406 34.615 0.00 0.00 0.00 2.52
2677 5026 7.486407 AATAAGTACTCCCTCCGTAAAGAAA 57.514 36.000 0.00 0.00 0.00 2.52
2678 5027 7.672122 ATAAGTACTCCCTCCGTAAAGAAAT 57.328 36.000 0.00 0.00 0.00 2.17
2679 5028 8.773033 ATAAGTACTCCCTCCGTAAAGAAATA 57.227 34.615 0.00 0.00 0.00 1.40
2680 5029 7.672122 AAGTACTCCCTCCGTAAAGAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
2681 5030 8.773033 AAGTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
2682 5031 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2683 5032 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2684 5033 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2685 5034 8.315220 ACTCCCTCCGTAAAGAAATATAAGAA 57.685 34.615 0.00 0.00 0.00 2.52
2686 5035 8.765517 ACTCCCTCCGTAAAGAAATATAAGAAA 58.234 33.333 0.00 0.00 0.00 2.52
2687 5036 9.780186 CTCCCTCCGTAAAGAAATATAAGAAAT 57.220 33.333 0.00 0.00 0.00 2.17
2749 5098 4.610333 TGTCCAGAGGATGTACTGTATGT 58.390 43.478 0.00 0.00 32.73 2.29
2754 5103 7.014326 GTCCAGAGGATGTACTGTATGTGAATA 59.986 40.741 0.00 0.00 32.73 1.75
2789 5138 6.918569 ACGTGTGTCAACTATATAGCATTCTC 59.081 38.462 9.78 1.45 0.00 2.87
2834 5183 0.468226 TGGTTCCTTTCAGACACGCT 59.532 50.000 0.00 0.00 0.00 5.07
2848 5197 4.025229 CAGACACGCTAACTTACAAGCAAA 60.025 41.667 0.00 0.00 38.70 3.68
2945 5294 2.512885 CTGCTTGCAGCTGTATTTTCG 58.487 47.619 16.64 0.00 42.97 3.46
2954 5303 4.385447 GCAGCTGTATTTTCGCAAAATCAA 59.615 37.500 16.64 1.73 41.16 2.57
3000 5349 4.967084 TCAGGTAAGCTTACAACCTTGA 57.033 40.909 31.98 23.02 41.75 3.02
3029 5378 5.441718 AACAGAATTCAGGGAGCTATTCA 57.558 39.130 8.44 0.00 31.12 2.57
3080 5429 4.974645 TCATAACTCTCAAGGTGGTGTT 57.025 40.909 0.00 0.00 0.00 3.32
3138 5487 4.610333 ACCTTCTTCCAAGGACAAGTTTT 58.390 39.130 7.40 0.00 39.81 2.43
3140 5489 6.192044 ACCTTCTTCCAAGGACAAGTTTTTA 58.808 36.000 7.40 0.00 39.81 1.52
3296 5645 3.184581 CGAGTGAGTTTTTGTACTGGCTC 59.815 47.826 0.00 0.00 0.00 4.70
3411 5760 7.995289 TGGACATTCCATACAAATATTGTCAC 58.005 34.615 0.00 0.00 42.67 3.67
3446 5795 6.560253 TTTGATGTCAAGTCTCCTAAAAGC 57.440 37.500 0.00 0.00 37.15 3.51
3456 5805 4.113354 GTCTCCTAAAAGCGACGATGATT 58.887 43.478 0.00 0.00 0.00 2.57
3457 5806 4.567159 GTCTCCTAAAAGCGACGATGATTT 59.433 41.667 0.00 0.00 0.00 2.17
3466 5815 4.682787 AGCGACGATGATTTTAGTGATGA 58.317 39.130 0.00 0.00 0.00 2.92
3516 5865 4.756642 TCTCAGGTTTGTAGCATTGACTTG 59.243 41.667 0.00 0.00 0.00 3.16
3619 6458 5.930135 AGAATTCTGAAATGTACCGCCTAT 58.070 37.500 7.30 0.00 0.00 2.57
3633 6587 7.205297 TGTACCGCCTATTGAAGTATTAGTTC 58.795 38.462 4.57 4.57 0.00 3.01
3654 6608 7.781056 AGTTCAAACACTGGTTTACATCATTT 58.219 30.769 0.00 0.00 45.18 2.32
3655 6609 8.908903 AGTTCAAACACTGGTTTACATCATTTA 58.091 29.630 0.00 0.00 45.18 1.40
3656 6610 8.964150 GTTCAAACACTGGTTTACATCATTTAC 58.036 33.333 0.00 0.00 45.18 2.01
3690 6644 7.039504 ACCTCGGAAGTTTATTCACAGTACTTA 60.040 37.037 0.00 0.00 0.00 2.24
3762 6716 9.921637 CACTTTTTATATTGGCCAGTTTTCTTA 57.078 29.630 5.89 0.00 0.00 2.10
3773 6727 4.156739 GCCAGTTTTCTTATCTTCCCACAG 59.843 45.833 0.00 0.00 0.00 3.66
3775 6729 6.183347 CCAGTTTTCTTATCTTCCCACAGAT 58.817 40.000 0.00 0.00 37.31 2.90
3776 6730 7.338710 CCAGTTTTCTTATCTTCCCACAGATA 58.661 38.462 0.00 0.00 35.08 1.98
3778 6732 9.401058 CAGTTTTCTTATCTTCCCACAGATAAT 57.599 33.333 4.09 0.00 42.38 1.28
3779 6733 9.401058 AGTTTTCTTATCTTCCCACAGATAATG 57.599 33.333 4.09 0.83 42.38 1.90
3780 6734 8.624776 GTTTTCTTATCTTCCCACAGATAATGG 58.375 37.037 4.09 0.00 42.38 3.16
3922 6880 6.601613 AGTGAAAAGGTTCAAGACATTGTACA 59.398 34.615 0.00 0.00 45.29 2.90
3986 6944 7.432059 TGAGATAGTGATGTATCTTGAAGCTG 58.568 38.462 0.00 0.00 39.44 4.24
3993 6951 7.392673 AGTGATGTATCTTGAAGCTGAACATTT 59.607 33.333 0.00 0.00 0.00 2.32
4001 6959 5.534207 TGAAGCTGAACATTTTGGATTGT 57.466 34.783 0.00 0.00 0.00 2.71
4014 6972 9.426837 ACATTTTGGATTGTGATAAATCTGTTG 57.573 29.630 0.00 0.00 36.87 3.33
4148 7106 7.500892 TGGCTTGTTATCATATTCGTGGTAAAT 59.499 33.333 0.00 0.00 0.00 1.40
4196 7155 9.618890 TTTTCCATTTTCACATTCATTGGTTTA 57.381 25.926 0.00 0.00 0.00 2.01
4210 7169 4.986054 TTGGTTTAGTCTACACCCACAT 57.014 40.909 11.86 0.00 0.00 3.21
4211 7170 6.213802 TCATTGGTTTAGTCTACACCCACATA 59.786 38.462 11.86 0.00 0.00 2.29
4212 7171 6.436738 TTGGTTTAGTCTACACCCACATAA 57.563 37.500 11.86 0.00 0.00 1.90
4261 7221 5.410746 ACACAGCTGTTGTTTAGATCATGAG 59.589 40.000 18.94 2.15 38.16 2.90
4279 7239 1.956477 GAGTGTGCAGTTTTGGATGGT 59.044 47.619 0.00 0.00 0.00 3.55
4306 7271 1.147376 CAACGACAGGGTGGGTTCA 59.853 57.895 0.00 0.00 0.00 3.18
4343 7314 1.366319 ATCACTTGGAAGGCCACTCT 58.634 50.000 5.01 0.00 45.94 3.24
4351 7322 1.680338 GAAGGCCACTCTTGTGTTGT 58.320 50.000 5.01 0.00 42.34 3.32
4404 7375 6.094742 TGCAGTGTTTGTTAATCTTGAAGACA 59.905 34.615 0.00 0.00 0.00 3.41
4446 7417 3.873952 GGAAGTCATGAGCACCATTAGTC 59.126 47.826 0.00 0.00 31.94 2.59
4586 7557 1.436600 CATCTTTCAGCACAGCTCGT 58.563 50.000 0.00 0.00 36.40 4.18
4625 7596 2.055838 GATGCCACATTATGCAATGCG 58.944 47.619 0.00 0.00 44.62 4.73
4641 7612 3.829886 ATGCGTGGATTACAACAACTG 57.170 42.857 0.00 0.00 0.00 3.16
4705 7676 0.677731 TCTGGTTGCTATGGCTGCAC 60.678 55.000 1.68 0.00 40.40 4.57
4754 7725 2.433446 CCAGGCTCAGCTGTGGTT 59.567 61.111 14.67 0.00 31.32 3.67
4770 7741 1.210155 GTTGATCACCGCCAAGTGC 59.790 57.895 0.00 0.00 37.68 4.40
4771 7742 1.971167 TTGATCACCGCCAAGTGCC 60.971 57.895 0.00 0.00 37.68 5.01
4782 7767 3.570212 AAGTGCCGCTCCCTTGGT 61.570 61.111 0.00 0.00 0.00 3.67
4795 7780 0.905357 CCTTGGTGGTGGACTAGGAG 59.095 60.000 0.00 0.00 31.57 3.69
4799 7784 1.433985 TGGTGGTGGACTAGGAGGTTA 59.566 52.381 0.00 0.00 0.00 2.85
4848 7833 0.179045 GGAGCTGAGTGTGGTGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
4970 7955 7.226720 GGTCGTCCATTTAATTATGATGTGAGT 59.773 37.037 0.00 0.00 0.00 3.41
5020 8005 7.657761 GGTTGTTGATGAATAATATCGAGACCT 59.342 37.037 0.00 0.00 30.22 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.472695 TTGATTTGAGGCGTGCTAGT 57.527 45.000 0.00 0.00 0.00 2.57
147 150 0.892063 TGCCGGCTGGTTAAATTTCC 59.108 50.000 29.70 0.00 37.67 3.13
691 698 4.039092 CACAGGGGTGGGAGCTGG 62.039 72.222 0.00 0.00 41.45 4.85
975 1516 1.676635 TGCAAGCACCCAGATCTGC 60.677 57.895 17.76 6.89 0.00 4.26
1218 1759 6.150474 GTCCATTCAGAATCCCGTTTTTCTTA 59.850 38.462 0.00 0.00 29.85 2.10
1224 1765 3.009033 TCAGTCCATTCAGAATCCCGTTT 59.991 43.478 0.00 0.00 0.00 3.60
1254 1795 2.747686 CCACTACCACGCCCAACT 59.252 61.111 0.00 0.00 0.00 3.16
1292 1833 1.287730 CTCACAGTCGGAAGCAGCAC 61.288 60.000 0.00 0.00 0.00 4.40
1378 1919 3.667050 GACGAAGCGCAAACCTAATTAC 58.333 45.455 11.47 0.00 0.00 1.89
1379 1920 2.346244 CGACGAAGCGCAAACCTAATTA 59.654 45.455 11.47 0.00 0.00 1.40
1380 1921 1.127951 CGACGAAGCGCAAACCTAATT 59.872 47.619 11.47 0.00 0.00 1.40
1381 1922 0.719465 CGACGAAGCGCAAACCTAAT 59.281 50.000 11.47 0.00 0.00 1.73
1382 1923 2.146954 CGACGAAGCGCAAACCTAA 58.853 52.632 11.47 0.00 0.00 2.69
1383 1924 3.850923 CGACGAAGCGCAAACCTA 58.149 55.556 11.47 0.00 0.00 3.08
1412 1953 1.887707 CAGGAAGATAACGGCGCCC 60.888 63.158 23.46 6.12 0.00 6.13
1413 1954 0.461339 TTCAGGAAGATAACGGCGCC 60.461 55.000 19.07 19.07 0.00 6.53
1414 1955 0.931005 CTTCAGGAAGATAACGGCGC 59.069 55.000 6.90 0.00 40.79 6.53
1415 1956 2.579207 TCTTCAGGAAGATAACGGCG 57.421 50.000 4.80 4.80 42.06 6.46
1423 1964 2.417339 CGACAACGTCTTCAGGAAGA 57.583 50.000 7.62 7.62 44.47 2.87
1435 1976 2.022129 GAGGAGCACCACGACAACG 61.022 63.158 2.07 0.00 45.75 4.10
1436 1977 0.946221 CAGAGGAGCACCACGACAAC 60.946 60.000 2.07 0.00 38.94 3.32
1437 1978 1.367471 CAGAGGAGCACCACGACAA 59.633 57.895 2.07 0.00 38.94 3.18
1438 1979 3.051210 CAGAGGAGCACCACGACA 58.949 61.111 2.07 0.00 38.94 4.35
1439 1980 2.433318 GCAGAGGAGCACCACGAC 60.433 66.667 2.07 0.00 38.94 4.34
1440 1981 4.056125 CGCAGAGGAGCACCACGA 62.056 66.667 2.07 0.00 38.94 4.35
1441 1982 4.363990 ACGCAGAGGAGCACCACG 62.364 66.667 2.07 3.26 38.94 4.94
1442 1983 2.740055 CACGCAGAGGAGCACCAC 60.740 66.667 2.07 0.00 38.94 4.16
1443 1984 4.687215 GCACGCAGAGGAGCACCA 62.687 66.667 2.07 0.00 38.94 4.17
1445 1986 4.687215 TGGCACGCAGAGGAGCAC 62.687 66.667 0.00 0.00 0.00 4.40
1446 1987 4.383861 CTGGCACGCAGAGGAGCA 62.384 66.667 0.00 0.00 0.00 4.26
1448 1989 4.463879 CCCTGGCACGCAGAGGAG 62.464 72.222 7.69 0.00 0.00 3.69
1450 1991 4.335647 AACCCTGGCACGCAGAGG 62.336 66.667 0.00 0.00 0.00 3.69
1451 1992 2.743928 GAACCCTGGCACGCAGAG 60.744 66.667 0.00 0.00 0.00 3.35
1452 1993 4.329545 GGAACCCTGGCACGCAGA 62.330 66.667 0.00 0.00 0.00 4.26
1459 2000 3.920093 CTTCACCCGGAACCCTGGC 62.920 68.421 0.73 0.00 37.51 4.85
1460 2001 2.221299 TCTTCACCCGGAACCCTGG 61.221 63.158 0.73 0.00 38.61 4.45
1461 2002 1.003718 GTCTTCACCCGGAACCCTG 60.004 63.158 0.73 0.00 0.00 4.45
1462 2003 2.222013 GGTCTTCACCCGGAACCCT 61.222 63.158 0.73 0.00 36.54 4.34
1463 2004 2.350134 GGTCTTCACCCGGAACCC 59.650 66.667 0.73 0.00 36.54 4.11
1471 2012 2.658807 AAGGAACAAGGGTCTTCACC 57.341 50.000 0.00 0.00 42.90 4.02
1472 2013 3.068165 CCAAAAGGAACAAGGGTCTTCAC 59.932 47.826 0.00 0.00 0.00 3.18
1473 2014 3.053245 TCCAAAAGGAACAAGGGTCTTCA 60.053 43.478 0.00 0.00 0.00 3.02
1474 2015 3.318275 GTCCAAAAGGAACAAGGGTCTTC 59.682 47.826 0.00 0.00 0.00 2.87
1475 2016 3.052869 AGTCCAAAAGGAACAAGGGTCTT 60.053 43.478 0.00 0.00 0.00 3.01
1476 2017 2.514160 AGTCCAAAAGGAACAAGGGTCT 59.486 45.455 0.00 0.00 0.00 3.85
1477 2018 2.945456 AGTCCAAAAGGAACAAGGGTC 58.055 47.619 0.00 0.00 0.00 4.46
1478 2019 3.031013 CAAGTCCAAAAGGAACAAGGGT 58.969 45.455 0.00 0.00 0.00 4.34
1479 2020 2.365293 CCAAGTCCAAAAGGAACAAGGG 59.635 50.000 0.00 0.00 0.00 3.95
1480 2021 2.224042 GCCAAGTCCAAAAGGAACAAGG 60.224 50.000 0.00 0.00 0.00 3.61
1481 2022 2.430332 TGCCAAGTCCAAAAGGAACAAG 59.570 45.455 0.00 0.00 0.00 3.16
1482 2023 2.461695 TGCCAAGTCCAAAAGGAACAA 58.538 42.857 0.00 0.00 0.00 2.83
1483 2024 2.151502 TGCCAAGTCCAAAAGGAACA 57.848 45.000 0.00 0.00 0.00 3.18
1484 2025 2.798145 CGTTGCCAAGTCCAAAAGGAAC 60.798 50.000 0.00 0.00 0.00 3.62
1485 2026 1.407258 CGTTGCCAAGTCCAAAAGGAA 59.593 47.619 0.00 0.00 0.00 3.36
1486 2027 1.028905 CGTTGCCAAGTCCAAAAGGA 58.971 50.000 0.00 0.00 0.00 3.36
1487 2028 0.031994 CCGTTGCCAAGTCCAAAAGG 59.968 55.000 0.00 0.00 0.00 3.11
1488 2029 0.597377 GCCGTTGCCAAGTCCAAAAG 60.597 55.000 0.00 0.00 0.00 2.27
1489 2030 1.439644 GCCGTTGCCAAGTCCAAAA 59.560 52.632 0.00 0.00 0.00 2.44
1490 2031 2.840066 CGCCGTTGCCAAGTCCAAA 61.840 57.895 0.00 0.00 0.00 3.28
1491 2032 3.283684 CGCCGTTGCCAAGTCCAA 61.284 61.111 0.00 0.00 0.00 3.53
1492 2033 4.243008 TCGCCGTTGCCAAGTCCA 62.243 61.111 0.00 0.00 0.00 4.02
1493 2034 3.723348 GTCGCCGTTGCCAAGTCC 61.723 66.667 0.00 0.00 0.00 3.85
1682 2223 0.868406 AAAACTGAGTGCAGCGCTAC 59.132 50.000 10.99 4.60 46.26 3.58
1683 2224 1.148310 GAAAACTGAGTGCAGCGCTA 58.852 50.000 10.99 0.00 46.26 4.26
1684 2225 1.510480 GGAAAACTGAGTGCAGCGCT 61.510 55.000 8.63 8.63 46.26 5.92
1685 2226 1.081840 GGAAAACTGAGTGCAGCGC 60.082 57.895 0.00 0.00 46.26 5.92
1686 2227 1.165907 TGGGAAAACTGAGTGCAGCG 61.166 55.000 0.00 0.00 46.26 5.18
1687 2228 1.032014 TTGGGAAAACTGAGTGCAGC 58.968 50.000 0.00 0.00 46.26 5.25
1689 2230 1.340889 GCATTGGGAAAACTGAGTGCA 59.659 47.619 0.00 0.00 0.00 4.57
1690 2231 1.615392 AGCATTGGGAAAACTGAGTGC 59.385 47.619 0.00 0.00 0.00 4.40
1691 2232 4.038402 AGAAAGCATTGGGAAAACTGAGTG 59.962 41.667 0.00 0.00 0.00 3.51
1692 2233 4.218312 AGAAAGCATTGGGAAAACTGAGT 58.782 39.130 0.00 0.00 0.00 3.41
1693 2234 4.861102 AGAAAGCATTGGGAAAACTGAG 57.139 40.909 0.00 0.00 0.00 3.35
1694 2235 5.612725 AAAGAAAGCATTGGGAAAACTGA 57.387 34.783 0.00 0.00 0.00 3.41
1695 2236 5.007921 CCAAAAGAAAGCATTGGGAAAACTG 59.992 40.000 0.00 0.00 39.92 3.16
1696 2237 5.125356 CCAAAAGAAAGCATTGGGAAAACT 58.875 37.500 0.00 0.00 39.92 2.66
1697 2238 4.881273 ACCAAAAGAAAGCATTGGGAAAAC 59.119 37.500 8.47 0.00 46.26 2.43
1698 2239 5.109500 ACCAAAAGAAAGCATTGGGAAAA 57.891 34.783 8.47 0.00 46.26 2.29
1699 2240 4.769345 ACCAAAAGAAAGCATTGGGAAA 57.231 36.364 8.47 0.00 46.26 3.13
1700 2241 4.262420 GCTACCAAAAGAAAGCATTGGGAA 60.262 41.667 8.47 0.00 46.26 3.97
1701 2242 3.258123 GCTACCAAAAGAAAGCATTGGGA 59.742 43.478 8.47 0.00 46.26 4.37
1702 2243 3.588955 GCTACCAAAAGAAAGCATTGGG 58.411 45.455 8.47 0.00 46.26 4.12
1704 2245 3.900941 ACGCTACCAAAAGAAAGCATTG 58.099 40.909 0.00 0.00 34.60 2.82
1705 2246 4.760204 ACTACGCTACCAAAAGAAAGCATT 59.240 37.500 0.00 0.00 34.60 3.56
1706 2247 4.324267 ACTACGCTACCAAAAGAAAGCAT 58.676 39.130 0.00 0.00 34.60 3.79
1707 2248 3.735591 ACTACGCTACCAAAAGAAAGCA 58.264 40.909 0.00 0.00 34.60 3.91
1708 2249 3.181533 CGACTACGCTACCAAAAGAAAGC 60.182 47.826 0.00 0.00 0.00 3.51
1709 2250 3.985925 ACGACTACGCTACCAAAAGAAAG 59.014 43.478 0.00 0.00 43.96 2.62
1710 2251 3.981211 ACGACTACGCTACCAAAAGAAA 58.019 40.909 0.00 0.00 43.96 2.52
1711 2252 3.648339 ACGACTACGCTACCAAAAGAA 57.352 42.857 0.00 0.00 43.96 2.52
1712 2253 3.753272 AGTACGACTACGCTACCAAAAGA 59.247 43.478 0.00 0.00 43.96 2.52
1713 2254 4.088823 AGTACGACTACGCTACCAAAAG 57.911 45.455 0.00 0.00 43.96 2.27
1714 2255 4.216257 AGAAGTACGACTACGCTACCAAAA 59.784 41.667 0.00 0.00 43.96 2.44
1715 2256 3.753272 AGAAGTACGACTACGCTACCAAA 59.247 43.478 0.00 0.00 43.96 3.28
1716 2257 3.125829 CAGAAGTACGACTACGCTACCAA 59.874 47.826 0.00 0.00 43.96 3.67
1717 2258 2.674852 CAGAAGTACGACTACGCTACCA 59.325 50.000 0.00 0.00 43.96 3.25
1718 2259 2.538535 GCAGAAGTACGACTACGCTACC 60.539 54.545 0.00 0.00 43.96 3.18
1719 2260 2.351111 AGCAGAAGTACGACTACGCTAC 59.649 50.000 0.00 0.00 43.96 3.58
1720 2261 2.625737 AGCAGAAGTACGACTACGCTA 58.374 47.619 0.00 0.00 43.96 4.26
1721 2262 1.451067 AGCAGAAGTACGACTACGCT 58.549 50.000 0.00 0.00 43.96 5.07
1722 2263 1.912110 CAAGCAGAAGTACGACTACGC 59.088 52.381 0.00 0.00 43.96 4.42
1723 2264 3.466712 TCAAGCAGAAGTACGACTACG 57.533 47.619 0.00 0.00 45.75 3.51
1724 2265 4.352887 GGATCAAGCAGAAGTACGACTAC 58.647 47.826 0.00 0.00 0.00 2.73
1725 2266 3.064958 CGGATCAAGCAGAAGTACGACTA 59.935 47.826 0.00 0.00 0.00 2.59
1726 2267 2.159366 CGGATCAAGCAGAAGTACGACT 60.159 50.000 0.00 0.00 0.00 4.18
1727 2268 2.159421 TCGGATCAAGCAGAAGTACGAC 60.159 50.000 0.00 0.00 0.00 4.34
1728 2269 2.089201 TCGGATCAAGCAGAAGTACGA 58.911 47.619 0.00 0.00 0.00 3.43
1729 2270 2.159366 AGTCGGATCAAGCAGAAGTACG 60.159 50.000 0.00 0.00 0.00 3.67
1730 2271 3.512033 AGTCGGATCAAGCAGAAGTAC 57.488 47.619 0.00 0.00 0.00 2.73
1731 2272 5.133941 AGATAGTCGGATCAAGCAGAAGTA 58.866 41.667 0.00 0.00 0.00 2.24
1732 2273 3.957497 AGATAGTCGGATCAAGCAGAAGT 59.043 43.478 0.00 0.00 0.00 3.01
1733 2274 4.582701 AGATAGTCGGATCAAGCAGAAG 57.417 45.455 0.00 0.00 0.00 2.85
1734 2275 4.442052 CCAAGATAGTCGGATCAAGCAGAA 60.442 45.833 0.00 0.00 0.00 3.02
1735 2276 3.068732 CCAAGATAGTCGGATCAAGCAGA 59.931 47.826 0.00 0.00 0.00 4.26
1736 2277 3.388308 CCAAGATAGTCGGATCAAGCAG 58.612 50.000 0.00 0.00 0.00 4.24
1737 2278 2.103094 CCCAAGATAGTCGGATCAAGCA 59.897 50.000 0.00 0.00 0.00 3.91
1738 2279 2.365617 TCCCAAGATAGTCGGATCAAGC 59.634 50.000 0.00 0.00 0.00 4.01
1739 2280 4.815269 GATCCCAAGATAGTCGGATCAAG 58.185 47.826 9.52 0.00 46.74 3.02
1740 2281 4.873746 GATCCCAAGATAGTCGGATCAA 57.126 45.455 9.52 0.00 46.74 2.57
1742 2283 2.164624 CCGATCCCAAGATAGTCGGATC 59.835 54.545 6.26 5.09 44.92 3.36
1743 2284 2.171840 CCGATCCCAAGATAGTCGGAT 58.828 52.381 6.26 0.00 38.88 4.18
1744 2285 1.617322 CCGATCCCAAGATAGTCGGA 58.383 55.000 6.26 0.00 38.88 4.55
1745 2286 0.038159 GCCGATCCCAAGATAGTCGG 60.038 60.000 7.68 7.68 39.32 4.79
1746 2287 0.673985 TGCCGATCCCAAGATAGTCG 59.326 55.000 0.00 0.00 30.90 4.18
1747 2288 3.070018 CAATGCCGATCCCAAGATAGTC 58.930 50.000 0.00 0.00 30.90 2.59
1748 2289 2.439507 ACAATGCCGATCCCAAGATAGT 59.560 45.455 0.00 0.00 30.90 2.12
1749 2290 3.131709 ACAATGCCGATCCCAAGATAG 57.868 47.619 0.00 0.00 30.90 2.08
1750 2291 3.576078 AACAATGCCGATCCCAAGATA 57.424 42.857 0.00 0.00 30.90 1.98
1751 2292 2.428171 CAAACAATGCCGATCCCAAGAT 59.572 45.455 0.00 0.00 34.57 2.40
1752 2293 1.818060 CAAACAATGCCGATCCCAAGA 59.182 47.619 0.00 0.00 0.00 3.02
1753 2294 1.818060 TCAAACAATGCCGATCCCAAG 59.182 47.619 0.00 0.00 0.00 3.61
1754 2295 1.818060 CTCAAACAATGCCGATCCCAA 59.182 47.619 0.00 0.00 0.00 4.12
1755 2296 1.462616 CTCAAACAATGCCGATCCCA 58.537 50.000 0.00 0.00 0.00 4.37
1756 2297 0.740737 CCTCAAACAATGCCGATCCC 59.259 55.000 0.00 0.00 0.00 3.85
1757 2298 0.740737 CCCTCAAACAATGCCGATCC 59.259 55.000 0.00 0.00 0.00 3.36
1758 2299 0.101219 GCCCTCAAACAATGCCGATC 59.899 55.000 0.00 0.00 0.00 3.69
1759 2300 0.323725 AGCCCTCAAACAATGCCGAT 60.324 50.000 0.00 0.00 0.00 4.18
1760 2301 0.326595 TAGCCCTCAAACAATGCCGA 59.673 50.000 0.00 0.00 0.00 5.54
1761 2302 0.451783 GTAGCCCTCAAACAATGCCG 59.548 55.000 0.00 0.00 0.00 5.69
1762 2303 0.817654 GGTAGCCCTCAAACAATGCC 59.182 55.000 0.00 0.00 0.00 4.40
1763 2304 0.817654 GGGTAGCCCTCAAACAATGC 59.182 55.000 0.00 0.00 41.34 3.56
1764 2305 1.272425 TGGGGTAGCCCTCAAACAATG 60.272 52.381 29.64 0.00 44.66 2.82
1765 2306 1.080638 TGGGGTAGCCCTCAAACAAT 58.919 50.000 29.64 0.00 44.66 2.71
1766 2307 0.111639 GTGGGGTAGCCCTCAAACAA 59.888 55.000 29.64 5.65 45.00 2.83
1767 2308 1.765074 GTGGGGTAGCCCTCAAACA 59.235 57.895 29.64 6.45 45.00 2.83
1768 2309 1.001269 GGTGGGGTAGCCCTCAAAC 60.001 63.158 29.64 19.08 45.00 2.93
1769 2310 0.849094 ATGGTGGGGTAGCCCTCAAA 60.849 55.000 29.64 18.20 45.00 2.69
1770 2311 1.230149 ATGGTGGGGTAGCCCTCAA 60.230 57.895 29.64 20.86 45.00 3.02
1771 2312 1.692749 GATGGTGGGGTAGCCCTCA 60.693 63.158 29.64 25.53 44.66 3.86
1772 2313 0.988678 AAGATGGTGGGGTAGCCCTC 60.989 60.000 29.64 25.42 44.66 4.30
1773 2314 1.084842 AAGATGGTGGGGTAGCCCT 59.915 57.895 29.64 10.54 44.66 5.19
1774 2315 1.227383 CAAGATGGTGGGGTAGCCC 59.773 63.158 23.81 23.81 44.51 5.19
1775 2316 1.209621 TACAAGATGGTGGGGTAGCC 58.790 55.000 1.07 1.07 0.00 3.93
1776 2317 2.548067 CGATACAAGATGGTGGGGTAGC 60.548 54.545 0.00 0.00 0.00 3.58
1777 2318 2.698797 ACGATACAAGATGGTGGGGTAG 59.301 50.000 0.00 0.00 0.00 3.18
1778 2319 2.754465 ACGATACAAGATGGTGGGGTA 58.246 47.619 0.00 0.00 0.00 3.69
1779 2320 1.580059 ACGATACAAGATGGTGGGGT 58.420 50.000 0.00 0.00 0.00 4.95
1780 2321 2.561569 GAACGATACAAGATGGTGGGG 58.438 52.381 0.00 0.00 0.00 4.96
1781 2322 2.201732 CGAACGATACAAGATGGTGGG 58.798 52.381 0.00 0.00 0.00 4.61
1782 2323 2.888594 ACGAACGATACAAGATGGTGG 58.111 47.619 0.14 0.00 0.00 4.61
1783 2324 3.001070 CGAACGAACGATACAAGATGGTG 60.001 47.826 0.14 0.00 35.09 4.17
1784 2325 3.176708 CGAACGAACGATACAAGATGGT 58.823 45.455 0.14 0.00 35.09 3.55
1785 2326 2.534349 CCGAACGAACGATACAAGATGG 59.466 50.000 0.14 0.00 35.09 3.51
1786 2327 2.034842 GCCGAACGAACGATACAAGATG 60.035 50.000 0.14 0.00 35.09 2.90
1787 2328 2.190981 GCCGAACGAACGATACAAGAT 58.809 47.619 0.14 0.00 35.09 2.40
1788 2329 1.621107 GCCGAACGAACGATACAAGA 58.379 50.000 0.14 0.00 35.09 3.02
1789 2330 0.643820 GGCCGAACGAACGATACAAG 59.356 55.000 0.14 0.00 35.09 3.16
1790 2331 1.072116 CGGCCGAACGAACGATACAA 61.072 55.000 24.07 0.00 35.47 2.41
1791 2332 1.514657 CGGCCGAACGAACGATACA 60.515 57.895 24.07 0.00 35.47 2.29
1792 2333 1.514873 ACGGCCGAACGAACGATAC 60.515 57.895 35.90 0.00 37.61 2.24
1793 2334 1.514657 CACGGCCGAACGAACGATA 60.515 57.895 35.90 0.00 37.61 2.92
1794 2335 2.198906 TACACGGCCGAACGAACGAT 62.199 55.000 35.90 1.64 37.61 3.73
1795 2336 2.902419 TACACGGCCGAACGAACGA 61.902 57.895 35.90 4.56 37.61 3.85
1796 2337 2.428902 TACACGGCCGAACGAACG 60.429 61.111 35.90 12.70 37.61 3.95
1797 2338 0.940991 AAGTACACGGCCGAACGAAC 60.941 55.000 35.90 20.74 37.61 3.95
1798 2339 0.664166 GAAGTACACGGCCGAACGAA 60.664 55.000 35.90 9.37 37.61 3.85
1799 2340 1.081242 GAAGTACACGGCCGAACGA 60.081 57.895 35.90 11.21 37.61 3.85
1800 2341 2.430942 CGAAGTACACGGCCGAACG 61.431 63.158 35.90 21.75 40.31 3.95
1801 2342 0.940991 AACGAAGTACACGGCCGAAC 60.941 55.000 35.90 25.10 45.00 3.95
1802 2343 0.249405 AAACGAAGTACACGGCCGAA 60.249 50.000 35.90 14.32 45.00 4.30
1803 2344 0.940519 CAAACGAAGTACACGGCCGA 60.941 55.000 35.90 6.51 45.00 5.54
1804 2345 0.940519 TCAAACGAAGTACACGGCCG 60.941 55.000 26.86 26.86 45.00 6.13
1805 2346 1.127951 CATCAAACGAAGTACACGGCC 59.872 52.381 14.78 0.00 45.00 6.13
1806 2347 1.796459 ACATCAAACGAAGTACACGGC 59.204 47.619 14.78 0.00 45.00 5.68
1807 2348 4.451557 GAAACATCAAACGAAGTACACGG 58.548 43.478 14.78 0.00 45.00 4.94
1808 2349 4.210537 AGGAAACATCAAACGAAGTACACG 59.789 41.667 10.13 10.13 45.00 4.49
1809 2350 5.668558 AGGAAACATCAAACGAAGTACAC 57.331 39.130 0.00 0.00 45.00 2.90
1810 2351 6.687081 AAAGGAAACATCAAACGAAGTACA 57.313 33.333 0.00 0.00 45.00 2.90
1826 2367 9.181061 GCCCCGCTTTATATATAATAAAGGAAA 57.819 33.333 15.59 0.00 40.25 3.13
1827 2368 7.496591 CGCCCCGCTTTATATATAATAAAGGAA 59.503 37.037 15.59 0.00 40.25 3.36
1828 2369 6.987992 CGCCCCGCTTTATATATAATAAAGGA 59.012 38.462 15.59 0.00 40.25 3.36
1829 2370 6.987992 TCGCCCCGCTTTATATATAATAAAGG 59.012 38.462 15.59 7.60 40.25 3.11
1830 2371 8.428186 TTCGCCCCGCTTTATATATAATAAAG 57.572 34.615 6.01 11.43 41.86 1.85
1831 2372 8.789825 TTTCGCCCCGCTTTATATATAATAAA 57.210 30.769 6.01 0.00 0.00 1.40
1832 2373 7.011669 GCTTTCGCCCCGCTTTATATATAATAA 59.988 37.037 6.01 0.00 0.00 1.40
1833 2374 6.480981 GCTTTCGCCCCGCTTTATATATAATA 59.519 38.462 6.01 0.00 0.00 0.98
1834 2375 5.296035 GCTTTCGCCCCGCTTTATATATAAT 59.704 40.000 6.01 0.00 0.00 1.28
1835 2376 4.632688 GCTTTCGCCCCGCTTTATATATAA 59.367 41.667 0.81 0.81 0.00 0.98
1836 2377 4.186159 GCTTTCGCCCCGCTTTATATATA 58.814 43.478 0.00 0.00 0.00 0.86
1837 2378 3.007635 GCTTTCGCCCCGCTTTATATAT 58.992 45.455 0.00 0.00 0.00 0.86
1838 2379 2.419667 GCTTTCGCCCCGCTTTATATA 58.580 47.619 0.00 0.00 0.00 0.86
1839 2380 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
1840 2381 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
1841 2382 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
1872 2413 9.833917 GACCTAGCTGATAACCTAATTACTTTT 57.166 33.333 0.00 0.00 0.00 2.27
1928 2469 4.113354 GGTGAACACTCGGATATGAAGTC 58.887 47.826 4.96 0.00 0.00 3.01
1929 2470 3.769844 AGGTGAACACTCGGATATGAAGT 59.230 43.478 4.96 0.00 0.00 3.01
1965 2506 1.876799 TCCACTGGCACATTTACGTTG 59.123 47.619 0.00 0.00 38.20 4.10
1973 2514 3.090210 TCATCATTTCCACTGGCACAT 57.910 42.857 0.00 0.00 38.20 3.21
2022 2563 9.691362 TTTGCAATGAAAAAGAAATACTCCTAC 57.309 29.630 0.00 0.00 0.00 3.18
2023 2564 9.691362 GTTTGCAATGAAAAAGAAATACTCCTA 57.309 29.630 0.00 0.00 0.00 2.94
2024 2565 8.203485 TGTTTGCAATGAAAAAGAAATACTCCT 58.797 29.630 0.00 0.00 0.00 3.69
2025 2566 8.364129 TGTTTGCAATGAAAAAGAAATACTCC 57.636 30.769 0.00 0.00 0.00 3.85
2026 2567 9.853921 CTTGTTTGCAATGAAAAAGAAATACTC 57.146 29.630 0.00 0.00 33.65 2.59
2027 2568 8.829612 CCTTGTTTGCAATGAAAAAGAAATACT 58.170 29.630 0.00 0.00 33.65 2.12
2066 2607 6.881602 GGGGCACACAATTAAATTAATGGAAA 59.118 34.615 7.09 0.00 0.00 3.13
2075 2616 5.193099 ACTAGAGGGGCACACAATTAAAT 57.807 39.130 0.00 0.00 0.00 1.40
2084 2625 1.198759 GGGACAACTAGAGGGGCACA 61.199 60.000 0.00 0.00 0.00 4.57
2088 2629 0.613777 GTGTGGGACAACTAGAGGGG 59.386 60.000 0.00 0.00 44.16 4.79
2106 2647 2.689983 CCCAGCAAACAGAAAGTGAAGT 59.310 45.455 0.00 0.00 0.00 3.01
2109 2650 2.297701 GACCCAGCAAACAGAAAGTGA 58.702 47.619 0.00 0.00 0.00 3.41
2115 2656 3.569194 TTAACTGACCCAGCAAACAGA 57.431 42.857 0.00 0.00 34.37 3.41
2146 2687 9.679661 TTTGCTCCTTTACTGTCATATATGAAA 57.320 29.630 16.97 11.12 38.75 2.69
2149 2695 8.072567 GCTTTTGCTCCTTTACTGTCATATATG 58.927 37.037 6.36 6.36 43.35 1.78
2172 2718 3.191371 CAGGAAAAATACGCTTCCAGCTT 59.809 43.478 3.83 0.00 43.12 3.74
2176 2722 7.414762 GCTTATAACAGGAAAAATACGCTTCCA 60.415 37.037 3.83 0.00 43.12 3.53
2309 2857 7.585579 TTGAAATGATTATGGCTTAGATGCA 57.414 32.000 0.00 0.00 34.04 3.96
2311 2859 9.674824 GAGTTTGAAATGATTATGGCTTAGATG 57.325 33.333 0.00 0.00 0.00 2.90
2312 2860 9.412460 TGAGTTTGAAATGATTATGGCTTAGAT 57.588 29.630 0.00 0.00 0.00 1.98
2313 2861 8.806429 TGAGTTTGAAATGATTATGGCTTAGA 57.194 30.769 0.00 0.00 0.00 2.10
2321 2869 9.927668 ACGGAATTTTGAGTTTGAAATGATTAT 57.072 25.926 0.00 0.00 0.00 1.28
2345 3870 7.607005 GGTAACGAATGTTGTTTATCTCTACG 58.393 38.462 0.00 0.00 39.12 3.51
2371 3897 5.451908 CATCCACATAACGAATTACCATGC 58.548 41.667 0.00 0.00 0.00 4.06
2382 3908 0.393673 TGGTGCCCATCCACATAACG 60.394 55.000 0.00 0.00 37.46 3.18
2387 3913 1.714011 TTGTCTGGTGCCCATCCACA 61.714 55.000 0.00 0.00 37.46 4.17
2416 3942 9.800433 CCTAGCAATATCTATGACTATGAACAG 57.200 37.037 0.00 0.00 0.00 3.16
2438 3964 2.541346 CGCAACATATGTGAGCACCTAG 59.459 50.000 24.67 10.75 42.32 3.02
2453 3979 3.874543 CCTAGTAAATATGGCACGCAACA 59.125 43.478 0.00 0.00 0.00 3.33
2454 3980 4.025145 GTCCTAGTAAATATGGCACGCAAC 60.025 45.833 0.00 0.00 0.00 4.17
2458 3984 4.745125 CACAGTCCTAGTAAATATGGCACG 59.255 45.833 0.00 0.00 0.00 5.34
2475 4009 2.749076 TGCCATTTACATCAGCACAGTC 59.251 45.455 0.00 0.00 0.00 3.51
2519 4053 3.574074 CTGCCCCCAAGACCCAGTG 62.574 68.421 0.00 0.00 0.00 3.66
2521 4055 4.052518 CCTGCCCCCAAGACCCAG 62.053 72.222 0.00 0.00 0.00 4.45
2554 4903 2.430694 TGGTACAGGTCAGGATTGATCG 59.569 50.000 0.00 0.00 39.52 3.69
2574 4923 4.494091 AATCCAGGAGATGTTGGTACTG 57.506 45.455 0.00 0.00 34.56 2.74
2616 4965 2.814280 ATCCTACGCGGTAGATTTGG 57.186 50.000 12.47 0.00 38.29 3.28
2622 4971 4.754114 ACTACTAGAAATCCTACGCGGTAG 59.246 45.833 12.47 9.94 36.04 3.18
2625 4974 5.876612 ATACTACTAGAAATCCTACGCGG 57.123 43.478 12.47 0.00 0.00 6.46
2649 4998 9.866655 TCTTTACGGAGGGAGTACTTATTAATA 57.133 33.333 0.00 0.00 0.00 0.98
2657 5006 8.773033 TTATATTTCTTTACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
2658 5007 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
2659 5008 9.425248 TTCTTATATTTCTTTACGGAGGGAGTA 57.575 33.333 0.00 0.00 0.00 2.59
2660 5009 7.909485 TCTTATATTTCTTTACGGAGGGAGT 57.091 36.000 0.00 0.00 0.00 3.85
2661 5010 9.780186 ATTTCTTATATTTCTTTACGGAGGGAG 57.220 33.333 0.00 0.00 0.00 4.30
2685 5034 9.343539 GGCTAGTGGAATCAGAAAACTTATATT 57.656 33.333 0.00 0.00 0.00 1.28
2686 5035 8.718656 AGGCTAGTGGAATCAGAAAACTTATAT 58.281 33.333 0.00 0.00 0.00 0.86
2687 5036 8.090788 AGGCTAGTGGAATCAGAAAACTTATA 57.909 34.615 0.00 0.00 0.00 0.98
2688 5037 6.963322 AGGCTAGTGGAATCAGAAAACTTAT 58.037 36.000 0.00 0.00 0.00 1.73
2689 5038 6.213600 AGAGGCTAGTGGAATCAGAAAACTTA 59.786 38.462 0.00 0.00 0.00 2.24
2695 5044 2.690497 CGAGAGGCTAGTGGAATCAGAA 59.310 50.000 0.00 0.00 0.00 3.02
2699 5048 2.035321 CCTTCGAGAGGCTAGTGGAATC 59.965 54.545 0.00 0.00 39.09 2.52
2702 5051 0.624254 TCCTTCGAGAGGCTAGTGGA 59.376 55.000 8.32 0.00 45.87 4.02
2728 5077 4.645136 TCACATACAGTACATCCTCTGGAC 59.355 45.833 0.00 0.00 39.21 4.02
2731 5080 9.416794 GATTATTCACATACAGTACATCCTCTG 57.583 37.037 0.00 0.00 37.65 3.35
2749 5098 5.184287 TGACACACGTCCTAGTGATTATTCA 59.816 40.000 10.39 1.34 44.43 2.57
2754 5103 3.321111 AGTTGACACACGTCCTAGTGATT 59.679 43.478 10.39 0.00 44.43 2.57
2789 5138 9.486497 AGATATGAATTGCTGTGTAACTATCTG 57.514 33.333 0.00 0.00 38.04 2.90
2795 5144 6.683974 ACCAGATATGAATTGCTGTGTAAC 57.316 37.500 0.00 0.00 37.35 2.50
2848 5197 5.656213 AGTAGCAGTACCAATTACGAGTT 57.344 39.130 0.00 0.00 35.61 3.01
2906 5255 6.299805 AGCAGTACAAGTGGAGAATCATAA 57.700 37.500 0.00 0.00 36.25 1.90
2912 5261 2.158827 TGCAAGCAGTACAAGTGGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
3000 5349 4.811063 GCTCCCTGAATTCTGTTTTACCCT 60.811 45.833 7.05 0.00 0.00 4.34
3013 5362 6.512514 AGAAAGATGAATAGCTCCCTGAAT 57.487 37.500 0.00 0.00 0.00 2.57
3094 5443 6.775629 AGGTTGGATTGAAACAGCTTTAACTA 59.224 34.615 0.00 0.00 0.00 2.24
3107 5456 4.141041 TCCTTGGAAGAAGGTTGGATTGAA 60.141 41.667 0.00 0.00 38.55 2.69
3138 5487 5.480422 TCACTCCAGCTGAATCAAGTACTAA 59.520 40.000 17.39 0.00 0.00 2.24
3140 5489 3.834813 TCACTCCAGCTGAATCAAGTACT 59.165 43.478 17.39 0.00 0.00 2.73
3296 5645 5.901552 ACCACCACAATGTAAAAAGAACAG 58.098 37.500 0.00 0.00 0.00 3.16
3411 5760 0.176219 ACATCAAATGCCGGCAATGG 59.824 50.000 36.33 24.62 0.00 3.16
3446 5795 5.281727 TCCTCATCACTAAAATCATCGTCG 58.718 41.667 0.00 0.00 0.00 5.12
3456 5805 7.039011 TGCTAACTCTCTTTCCTCATCACTAAA 60.039 37.037 0.00 0.00 0.00 1.85
3457 5806 6.437477 TGCTAACTCTCTTTCCTCATCACTAA 59.563 38.462 0.00 0.00 0.00 2.24
3466 5815 4.917906 ATGGTTGCTAACTCTCTTTCCT 57.082 40.909 0.00 0.00 0.00 3.36
3595 6434 5.353394 AGGCGGTACATTTCAGAATTCTA 57.647 39.130 7.86 0.00 0.00 2.10
3602 6441 4.876107 ACTTCAATAGGCGGTACATTTCAG 59.124 41.667 0.00 0.00 0.00 3.02
3609 6448 7.205297 TGAACTAATACTTCAATAGGCGGTAC 58.795 38.462 0.00 0.00 0.00 3.34
3612 6451 7.065324 TGTTTGAACTAATACTTCAATAGGCGG 59.935 37.037 0.00 0.00 37.45 6.13
3619 6458 8.514330 AACCAGTGTTTGAACTAATACTTCAA 57.486 30.769 0.00 0.00 36.14 2.69
3633 6587 8.914654 CATGTAAATGATGTAAACCAGTGTTTG 58.085 33.333 1.14 0.00 44.27 2.93
3635 6589 8.177119 ACATGTAAATGATGTAAACCAGTGTT 57.823 30.769 0.00 0.00 32.12 3.32
3654 6608 8.851541 AATAAACTTCCGAGGTTAAACATGTA 57.148 30.769 0.00 0.00 38.49 2.29
3655 6609 7.446013 TGAATAAACTTCCGAGGTTAAACATGT 59.554 33.333 0.00 0.00 38.49 3.21
3656 6610 7.749126 GTGAATAAACTTCCGAGGTTAAACATG 59.251 37.037 0.00 0.00 38.49 3.21
3773 6727 5.888161 ACCAAATGAACTCACTCCCATTATC 59.112 40.000 0.00 0.00 0.00 1.75
3775 6729 5.255397 ACCAAATGAACTCACTCCCATTA 57.745 39.130 0.00 0.00 0.00 1.90
3776 6730 4.118168 ACCAAATGAACTCACTCCCATT 57.882 40.909 0.00 0.00 0.00 3.16
3778 6732 3.593442 AACCAAATGAACTCACTCCCA 57.407 42.857 0.00 0.00 0.00 4.37
3779 6733 4.459337 CCTAAACCAAATGAACTCACTCCC 59.541 45.833 0.00 0.00 0.00 4.30
3780 6734 5.048713 CACCTAAACCAAATGAACTCACTCC 60.049 44.000 0.00 0.00 0.00 3.85
3781 6735 5.048713 CCACCTAAACCAAATGAACTCACTC 60.049 44.000 0.00 0.00 0.00 3.51
3841 6799 6.010219 CAGAAGTTAATCCCCTGGAAAAGAA 58.990 40.000 0.00 0.00 34.34 2.52
3922 6880 2.975489 AGCACGGAATCCTTGGAGATAT 59.025 45.455 7.90 0.00 0.00 1.63
3986 6944 9.643693 ACAGATTTATCACAATCCAAAATGTTC 57.356 29.630 0.00 0.00 34.15 3.18
4014 6972 9.704098 GAAGAACTGAAACAAAACCGATATATC 57.296 33.333 2.34 2.34 0.00 1.63
4218 7178 5.875224 TGTGTCTCCACCTGATATCAAAAA 58.125 37.500 6.90 0.00 41.09 1.94
4261 7221 2.888834 AACCATCCAAAACTGCACAC 57.111 45.000 0.00 0.00 0.00 3.82
4286 7246 3.785122 AACCCACCCTGTCGTTGGC 62.785 63.158 0.00 0.00 0.00 4.52
4291 7251 0.036164 TCATTGAACCCACCCTGTCG 59.964 55.000 0.00 0.00 0.00 4.35
4324 7295 1.366319 AGAGTGGCCTTCCAAGTGAT 58.634 50.000 3.32 0.00 45.53 3.06
4343 7314 4.518970 GGGAAGCATTAGAGAACAACACAA 59.481 41.667 0.00 0.00 0.00 3.33
4351 7322 4.675063 AAAAGGGGGAAGCATTAGAGAA 57.325 40.909 0.00 0.00 0.00 2.87
4376 7347 6.449635 TCAAGATTAACAAACACTGCACTT 57.550 33.333 0.00 0.00 0.00 3.16
4390 7361 8.999431 GGTGAACAAGTATGTCTTCAAGATTAA 58.001 33.333 0.00 0.00 39.40 1.40
4392 7363 7.173907 CAGGTGAACAAGTATGTCTTCAAGATT 59.826 37.037 0.00 0.00 39.40 2.40
4404 7375 6.379988 ACTTCCAAAAACAGGTGAACAAGTAT 59.620 34.615 0.00 0.00 0.00 2.12
4562 7533 1.093159 CTGTGCTGAAAGATGGCTCC 58.907 55.000 0.00 0.00 34.07 4.70
4586 7557 2.723273 TCACCTGCTCAGAAGTATCGA 58.277 47.619 0.00 0.00 0.00 3.59
4625 7596 2.228822 CAGCCCAGTTGTTGTAATCCAC 59.771 50.000 0.00 0.00 0.00 4.02
4641 7612 4.702131 AGAAATGTGAATAGACAACAGCCC 59.298 41.667 0.00 0.00 0.00 5.19
4754 7725 2.359850 GGCACTTGGCGGTGATCA 60.360 61.111 13.30 0.00 46.16 2.92
4770 7741 4.722700 CCACCACCAAGGGAGCGG 62.723 72.222 0.00 0.00 43.89 5.52
4771 7742 3.636231 TCCACCACCAAGGGAGCG 61.636 66.667 0.00 0.00 43.89 5.03
4773 7744 0.905357 CTAGTCCACCACCAAGGGAG 59.095 60.000 0.00 0.00 43.89 4.30
4775 7746 0.546747 TCCTAGTCCACCACCAAGGG 60.547 60.000 0.00 0.00 43.89 3.95
4778 7763 0.192566 ACCTCCTAGTCCACCACCAA 59.807 55.000 0.00 0.00 0.00 3.67
4782 7767 3.381335 GGATTAACCTCCTAGTCCACCA 58.619 50.000 0.00 0.00 35.41 4.17
4848 7833 4.802918 GCCTGGCAACTACTACAAGAAAGA 60.803 45.833 15.17 0.00 37.61 2.52
4927 7912 2.007608 GACCTTACCAATCGTTCCAGC 58.992 52.381 0.00 0.00 0.00 4.85
4970 7955 2.859165 ACTAGCAGGCTGTAGCAAAA 57.141 45.000 17.16 0.00 44.36 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.