Multiple sequence alignment - TraesCS3A01G259100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G259100 chr3A 100.000 2123 0 0 1 2123 481092127 481094249 0.000000e+00 3921.0
1 TraesCS3A01G259100 chr3D 88.139 1779 100 45 201 1904 361145931 361147673 0.000000e+00 2013.0
2 TraesCS3A01G259100 chr3D 93.627 204 9 3 1 200 61935051 61934848 3.420000e-78 302.0
3 TraesCS3A01G259100 chr3D 93.627 204 9 3 1 200 78375635 78375432 3.420000e-78 302.0
4 TraesCS3A01G259100 chr3B 86.000 1600 99 44 198 1714 470501837 470503394 0.000000e+00 1598.0
5 TraesCS3A01G259100 chr7A 94.608 204 7 3 1 200 15109155 15108952 1.580000e-81 313.0
6 TraesCS3A01G259100 chr4D 94.118 204 8 3 1 200 42261284 42261081 7.360000e-80 307.0
7 TraesCS3A01G259100 chr7D 93.627 204 9 3 1 200 110217532 110217735 3.420000e-78 302.0
8 TraesCS3A01G259100 chr6D 93.627 204 9 3 1 200 426929835 426930038 3.420000e-78 302.0
9 TraesCS3A01G259100 chr4B 93.627 204 9 4 1 200 141456751 141456954 3.420000e-78 302.0
10 TraesCS3A01G259100 chr2D 93.627 204 9 3 1 200 547803433 547803230 3.420000e-78 302.0
11 TraesCS3A01G259100 chr1B 93.627 204 9 3 1 200 562624137 562624340 3.420000e-78 302.0
12 TraesCS3A01G259100 chr1B 93.671 79 5 0 1033 1111 623766360 623766438 3.700000e-23 119.0
13 TraesCS3A01G259100 chr1B 80.909 110 14 6 1003 1109 608379857 608379752 1.750000e-11 80.5
14 TraesCS3A01G259100 chr6A 91.765 170 13 1 1955 2123 270590398 270590567 3.520000e-58 235.0
15 TraesCS3A01G259100 chr2A 91.765 170 13 1 1955 2123 15124755 15124586 3.520000e-58 235.0
16 TraesCS3A01G259100 chr2A 90.588 170 15 1 1955 2123 15105715 15105546 7.620000e-55 224.0
17 TraesCS3A01G259100 chr1D 93.671 79 5 0 1033 1111 453269181 453269259 3.700000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G259100 chr3A 481092127 481094249 2122 False 3921 3921 100.000 1 2123 1 chr3A.!!$F1 2122
1 TraesCS3A01G259100 chr3D 361145931 361147673 1742 False 2013 2013 88.139 201 1904 1 chr3D.!!$F1 1703
2 TraesCS3A01G259100 chr3B 470501837 470503394 1557 False 1598 1598 86.000 198 1714 1 chr3B.!!$F1 1516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.033796 CACCTGCCACCAATCCATCT 60.034 55.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2135 0.033208 CCTGAGCCTCACTCTCCTCT 60.033 60.0 0.0 0.0 46.41 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.752514 GGCACCTATCAGTACGGC 57.247 61.111 0.00 0.00 0.00 5.68
22 23 1.299926 GGCACCTATCAGTACGGCG 60.300 63.158 4.80 4.80 0.00 6.46
23 24 1.949631 GCACCTATCAGTACGGCGC 60.950 63.158 6.90 0.00 0.00 6.53
24 25 1.435925 CACCTATCAGTACGGCGCA 59.564 57.895 10.83 0.00 0.00 6.09
25 26 0.870307 CACCTATCAGTACGGCGCAC 60.870 60.000 10.83 3.76 0.00 5.34
26 27 1.035932 ACCTATCAGTACGGCGCACT 61.036 55.000 10.83 7.02 0.00 4.40
27 28 0.317938 CCTATCAGTACGGCGCACTC 60.318 60.000 10.36 0.00 0.00 3.51
28 29 0.317938 CTATCAGTACGGCGCACTCC 60.318 60.000 10.36 0.00 0.00 3.85
29 30 0.750546 TATCAGTACGGCGCACTCCT 60.751 55.000 10.36 3.12 0.00 3.69
30 31 2.005960 ATCAGTACGGCGCACTCCTC 62.006 60.000 10.36 0.00 0.00 3.71
31 32 2.675423 AGTACGGCGCACTCCTCA 60.675 61.111 10.83 0.00 0.00 3.86
32 33 2.260434 GTACGGCGCACTCCTCAA 59.740 61.111 10.83 0.00 0.00 3.02
33 34 2.092882 GTACGGCGCACTCCTCAAC 61.093 63.158 10.83 0.00 0.00 3.18
34 35 3.291101 TACGGCGCACTCCTCAACC 62.291 63.158 10.83 0.00 0.00 3.77
35 36 4.680237 CGGCGCACTCCTCAACCA 62.680 66.667 10.83 0.00 0.00 3.67
36 37 2.743928 GGCGCACTCCTCAACCAG 60.744 66.667 10.83 0.00 0.00 4.00
37 38 2.743928 GCGCACTCCTCAACCAGG 60.744 66.667 0.30 0.00 45.15 4.45
45 46 4.913126 CTCAACCAGGACGCCTAC 57.087 61.111 0.00 0.00 29.64 3.18
46 47 1.218316 CTCAACCAGGACGCCTACC 59.782 63.158 0.00 0.00 29.64 3.18
47 48 2.125673 CAACCAGGACGCCTACCG 60.126 66.667 0.00 0.00 44.21 4.02
48 49 3.387947 AACCAGGACGCCTACCGG 61.388 66.667 0.00 0.00 42.52 5.28
51 52 2.440796 CAGGACGCCTACCGGGTA 60.441 66.667 6.32 6.73 42.52 3.69
52 53 1.831286 CAGGACGCCTACCGGGTAT 60.831 63.158 6.32 0.00 42.52 2.73
53 54 1.831286 AGGACGCCTACCGGGTATG 60.831 63.158 6.32 6.22 42.52 2.39
54 55 1.829533 GGACGCCTACCGGGTATGA 60.830 63.158 12.94 0.00 42.52 2.15
55 56 1.658673 GACGCCTACCGGGTATGAG 59.341 63.158 12.94 11.77 42.52 2.90
56 57 2.338984 CGCCTACCGGGTATGAGC 59.661 66.667 12.94 12.32 37.43 4.26
57 58 2.741747 GCCTACCGGGTATGAGCC 59.258 66.667 12.94 0.00 37.43 4.70
58 59 2.880380 GCCTACCGGGTATGAGCCC 61.880 68.421 12.94 0.00 45.21 5.19
65 66 2.513897 GGTATGAGCCCACCGCAC 60.514 66.667 0.00 0.00 41.38 5.34
66 67 2.513897 GTATGAGCCCACCGCACC 60.514 66.667 0.00 0.00 41.38 5.01
67 68 2.687200 TATGAGCCCACCGCACCT 60.687 61.111 0.00 0.00 41.38 4.00
68 69 3.030168 TATGAGCCCACCGCACCTG 62.030 63.158 0.00 0.00 41.38 4.00
76 77 4.284550 ACCGCACCTGCCACCAAT 62.285 61.111 0.00 0.00 37.91 3.16
77 78 3.443045 CCGCACCTGCCACCAATC 61.443 66.667 0.00 0.00 37.91 2.67
78 79 3.443045 CGCACCTGCCACCAATCC 61.443 66.667 0.00 0.00 37.91 3.01
79 80 2.283101 GCACCTGCCACCAATCCA 60.283 61.111 0.00 0.00 34.31 3.41
80 81 1.683365 GCACCTGCCACCAATCCAT 60.683 57.895 0.00 0.00 34.31 3.41
81 82 1.669999 GCACCTGCCACCAATCCATC 61.670 60.000 0.00 0.00 34.31 3.51
82 83 0.033796 CACCTGCCACCAATCCATCT 60.034 55.000 0.00 0.00 0.00 2.90
83 84 0.706433 ACCTGCCACCAATCCATCTT 59.294 50.000 0.00 0.00 0.00 2.40
84 85 1.341383 ACCTGCCACCAATCCATCTTC 60.341 52.381 0.00 0.00 0.00 2.87
85 86 1.341285 CCTGCCACCAATCCATCTTCA 60.341 52.381 0.00 0.00 0.00 3.02
86 87 2.022195 CTGCCACCAATCCATCTTCAG 58.978 52.381 0.00 0.00 0.00 3.02
87 88 1.634973 TGCCACCAATCCATCTTCAGA 59.365 47.619 0.00 0.00 0.00 3.27
88 89 2.295885 GCCACCAATCCATCTTCAGAG 58.704 52.381 0.00 0.00 0.00 3.35
89 90 2.295885 CCACCAATCCATCTTCAGAGC 58.704 52.381 0.00 0.00 0.00 4.09
90 91 2.092538 CCACCAATCCATCTTCAGAGCT 60.093 50.000 0.00 0.00 0.00 4.09
91 92 2.943690 CACCAATCCATCTTCAGAGCTG 59.056 50.000 0.00 0.00 0.00 4.24
92 93 2.575279 ACCAATCCATCTTCAGAGCTGT 59.425 45.455 0.00 0.00 0.00 4.40
93 94 3.776969 ACCAATCCATCTTCAGAGCTGTA 59.223 43.478 0.00 0.00 0.00 2.74
94 95 4.125703 CCAATCCATCTTCAGAGCTGTAC 58.874 47.826 0.00 0.00 0.00 2.90
95 96 4.141756 CCAATCCATCTTCAGAGCTGTACT 60.142 45.833 0.00 0.00 0.00 2.73
96 97 4.669206 ATCCATCTTCAGAGCTGTACTG 57.331 45.455 0.00 0.00 36.80 2.74
97 98 3.435275 TCCATCTTCAGAGCTGTACTGT 58.565 45.455 0.00 0.00 36.81 3.55
98 99 3.834813 TCCATCTTCAGAGCTGTACTGTT 59.165 43.478 0.00 0.00 36.81 3.16
99 100 3.931468 CCATCTTCAGAGCTGTACTGTTG 59.069 47.826 0.00 0.00 36.81 3.33
100 101 3.032017 TCTTCAGAGCTGTACTGTTGC 57.968 47.619 0.00 0.00 36.81 4.17
101 102 2.365293 TCTTCAGAGCTGTACTGTTGCA 59.635 45.455 0.00 0.00 36.81 4.08
102 103 3.007290 TCTTCAGAGCTGTACTGTTGCAT 59.993 43.478 0.00 0.00 36.81 3.96
103 104 2.691927 TCAGAGCTGTACTGTTGCATG 58.308 47.619 0.00 0.00 36.81 4.06
104 105 2.037641 TCAGAGCTGTACTGTTGCATGT 59.962 45.455 0.00 0.00 36.81 3.21
105 106 3.258123 TCAGAGCTGTACTGTTGCATGTA 59.742 43.478 0.00 0.00 36.81 2.29
106 107 3.369147 CAGAGCTGTACTGTTGCATGTAC 59.631 47.826 14.38 14.38 39.37 2.90
107 108 2.673368 GAGCTGTACTGTTGCATGTACC 59.327 50.000 16.95 7.52 38.48 3.34
108 109 1.393539 GCTGTACTGTTGCATGTACCG 59.606 52.381 16.95 13.51 38.48 4.02
109 110 2.683968 CTGTACTGTTGCATGTACCGT 58.316 47.619 16.95 6.15 38.48 4.83
110 111 2.409012 TGTACTGTTGCATGTACCGTG 58.591 47.619 16.95 0.00 38.48 4.94
111 112 2.224090 TGTACTGTTGCATGTACCGTGT 60.224 45.455 16.95 3.85 38.48 4.49
112 113 1.508632 ACTGTTGCATGTACCGTGTC 58.491 50.000 0.00 0.00 0.00 3.67
113 114 1.202592 ACTGTTGCATGTACCGTGTCA 60.203 47.619 0.00 0.00 0.00 3.58
114 115 1.460743 CTGTTGCATGTACCGTGTCAG 59.539 52.381 0.00 0.00 0.00 3.51
115 116 0.796312 GTTGCATGTACCGTGTCAGG 59.204 55.000 0.00 0.00 37.30 3.86
117 118 0.037697 TGCATGTACCGTGTCAGGTC 60.038 55.000 0.00 0.00 44.68 3.85
118 119 0.246635 GCATGTACCGTGTCAGGTCT 59.753 55.000 0.00 0.00 44.68 3.85
119 120 1.736032 GCATGTACCGTGTCAGGTCTC 60.736 57.143 0.00 0.00 44.68 3.36
120 121 1.819288 CATGTACCGTGTCAGGTCTCT 59.181 52.381 0.00 0.00 44.68 3.10
121 122 1.531423 TGTACCGTGTCAGGTCTCTC 58.469 55.000 0.00 0.00 44.68 3.20
122 123 1.073444 TGTACCGTGTCAGGTCTCTCT 59.927 52.381 0.00 0.00 44.68 3.10
123 124 1.469308 GTACCGTGTCAGGTCTCTCTG 59.531 57.143 0.00 0.00 44.68 3.35
124 125 1.214062 CCGTGTCAGGTCTCTCTGC 59.786 63.158 0.00 0.00 34.91 4.26
125 126 1.214062 CGTGTCAGGTCTCTCTGCC 59.786 63.158 0.00 0.00 34.91 4.85
126 127 1.527433 CGTGTCAGGTCTCTCTGCCA 61.527 60.000 0.00 0.00 34.91 4.92
127 128 0.901124 GTGTCAGGTCTCTCTGCCAT 59.099 55.000 0.00 0.00 34.91 4.40
128 129 1.134848 GTGTCAGGTCTCTCTGCCATC 60.135 57.143 0.00 0.00 34.91 3.51
129 130 0.102120 GTCAGGTCTCTCTGCCATCG 59.898 60.000 0.00 0.00 34.91 3.84
130 131 0.034089 TCAGGTCTCTCTGCCATCGA 60.034 55.000 0.00 0.00 34.91 3.59
131 132 0.102120 CAGGTCTCTCTGCCATCGAC 59.898 60.000 0.00 0.00 0.00 4.20
132 133 1.064946 GGTCTCTCTGCCATCGACG 59.935 63.158 0.00 0.00 0.00 5.12
133 134 1.587613 GTCTCTCTGCCATCGACGC 60.588 63.158 0.00 0.00 0.00 5.19
134 135 2.279120 CTCTCTGCCATCGACGCC 60.279 66.667 4.01 0.00 0.00 5.68
135 136 3.068064 TCTCTGCCATCGACGCCA 61.068 61.111 4.01 0.00 0.00 5.69
136 137 2.887568 CTCTGCCATCGACGCCAC 60.888 66.667 4.01 0.00 0.00 5.01
137 138 4.451150 TCTGCCATCGACGCCACC 62.451 66.667 4.01 0.00 0.00 4.61
138 139 4.758251 CTGCCATCGACGCCACCA 62.758 66.667 4.01 0.00 0.00 4.17
141 142 4.429212 CCATCGACGCCACCACGA 62.429 66.667 0.00 0.00 40.18 4.35
142 143 3.179265 CATCGACGCCACCACGAC 61.179 66.667 0.00 0.00 38.79 4.34
161 162 4.570663 CCCGACGGCGTCATCCTC 62.571 72.222 35.62 12.27 35.23 3.71
162 163 4.570663 CCGACGGCGTCATCCTCC 62.571 72.222 35.62 11.52 35.23 4.30
163 164 3.518998 CGACGGCGTCATCCTCCT 61.519 66.667 35.62 0.00 32.09 3.69
164 165 2.105128 GACGGCGTCATCCTCCTG 59.895 66.667 33.07 0.00 32.09 3.86
165 166 4.148825 ACGGCGTCATCCTCCTGC 62.149 66.667 6.77 0.00 0.00 4.85
169 170 4.193334 CGTCATCCTCCTGCGCGA 62.193 66.667 12.10 0.00 0.00 5.87
170 171 2.279120 GTCATCCTCCTGCGCGAG 60.279 66.667 12.10 3.83 0.00 5.03
171 172 2.755876 TCATCCTCCTGCGCGAGT 60.756 61.111 12.10 0.00 0.00 4.18
172 173 2.279120 CATCCTCCTGCGCGAGTC 60.279 66.667 12.10 0.00 0.00 3.36
173 174 3.532155 ATCCTCCTGCGCGAGTCC 61.532 66.667 12.10 0.00 0.00 3.85
175 176 3.842923 CCTCCTGCGCGAGTCCAT 61.843 66.667 12.10 0.00 0.00 3.41
176 177 2.279120 CTCCTGCGCGAGTCCATC 60.279 66.667 12.10 0.00 0.00 3.51
177 178 3.781770 CTCCTGCGCGAGTCCATCC 62.782 68.421 12.10 0.00 0.00 3.51
178 179 3.842923 CCTGCGCGAGTCCATCCT 61.843 66.667 12.10 0.00 0.00 3.24
179 180 2.279120 CTGCGCGAGTCCATCCTC 60.279 66.667 12.10 0.00 0.00 3.71
180 181 3.781770 CTGCGCGAGTCCATCCTCC 62.782 68.421 12.10 0.00 0.00 4.30
181 182 4.593864 GCGCGAGTCCATCCTCCC 62.594 72.222 12.10 0.00 0.00 4.30
182 183 3.147595 CGCGAGTCCATCCTCCCA 61.148 66.667 0.00 0.00 0.00 4.37
183 184 2.501610 GCGAGTCCATCCTCCCAC 59.498 66.667 0.00 0.00 0.00 4.61
184 185 2.359169 GCGAGTCCATCCTCCCACA 61.359 63.158 0.00 0.00 0.00 4.17
185 186 1.819229 CGAGTCCATCCTCCCACAG 59.181 63.158 0.00 0.00 0.00 3.66
186 187 1.524482 GAGTCCATCCTCCCACAGC 59.476 63.158 0.00 0.00 0.00 4.40
187 188 2.187946 GTCCATCCTCCCACAGCG 59.812 66.667 0.00 0.00 0.00 5.18
188 189 2.038813 TCCATCCTCCCACAGCGA 59.961 61.111 0.00 0.00 0.00 4.93
189 190 1.612146 TCCATCCTCCCACAGCGAA 60.612 57.895 0.00 0.00 0.00 4.70
190 191 1.450312 CCATCCTCCCACAGCGAAC 60.450 63.158 0.00 0.00 0.00 3.95
191 192 1.599047 CATCCTCCCACAGCGAACT 59.401 57.895 0.00 0.00 0.00 3.01
192 193 0.460987 CATCCTCCCACAGCGAACTC 60.461 60.000 0.00 0.00 0.00 3.01
193 194 1.617947 ATCCTCCCACAGCGAACTCC 61.618 60.000 0.00 0.00 0.00 3.85
194 195 2.125912 CTCCCACAGCGAACTCCG 60.126 66.667 0.00 0.00 42.21 4.63
195 196 2.599281 TCCCACAGCGAACTCCGA 60.599 61.111 0.00 0.00 41.76 4.55
196 197 2.154798 CTCCCACAGCGAACTCCGAA 62.155 60.000 0.00 0.00 41.76 4.30
197 198 1.079127 CCCACAGCGAACTCCGAAT 60.079 57.895 0.00 0.00 41.76 3.34
198 199 1.084370 CCCACAGCGAACTCCGAATC 61.084 60.000 0.00 0.00 41.76 2.52
199 200 0.108615 CCACAGCGAACTCCGAATCT 60.109 55.000 0.00 0.00 41.76 2.40
205 206 2.866762 AGCGAACTCCGAATCTAAATGC 59.133 45.455 0.00 0.00 41.76 3.56
229 230 1.003866 GTCTCGTGGTCACAACTTTGC 60.004 52.381 1.90 0.00 0.00 3.68
230 231 0.042188 CTCGTGGTCACAACTTTGCG 60.042 55.000 1.90 0.00 0.00 4.85
235 236 1.262950 TGGTCACAACTTTGCGATTCG 59.737 47.619 0.62 0.62 0.00 3.34
248 251 2.125512 ATTCGCACTCTCGGTGGC 60.126 61.111 0.00 0.00 45.44 5.01
291 300 7.851387 TGAATAAAATGTGAAATGCATGCAT 57.149 28.000 27.46 27.46 38.46 3.96
296 305 1.752498 TGTGAAATGCATGCATCCTCC 59.248 47.619 32.25 22.04 35.31 4.30
297 306 1.752498 GTGAAATGCATGCATCCTCCA 59.248 47.619 32.25 22.43 35.31 3.86
298 307 2.028876 TGAAATGCATGCATCCTCCAG 58.971 47.619 32.25 0.00 35.31 3.86
299 308 0.750850 AAATGCATGCATCCTCCAGC 59.249 50.000 32.25 0.00 35.31 4.85
300 309 1.113517 AATGCATGCATCCTCCAGCC 61.114 55.000 32.25 0.00 35.31 4.85
301 310 2.910994 GCATGCATCCTCCAGCCC 60.911 66.667 14.21 0.00 0.00 5.19
302 311 2.924640 CATGCATCCTCCAGCCCT 59.075 61.111 0.00 0.00 0.00 5.19
303 312 1.228184 CATGCATCCTCCAGCCCTC 60.228 63.158 0.00 0.00 0.00 4.30
307 316 1.763546 GCATCCTCCAGCCCTCTACC 61.764 65.000 0.00 0.00 0.00 3.18
315 324 4.340617 CTCCAGCCCTCTACCTATAGAAG 58.659 52.174 0.00 0.00 36.98 2.85
322 333 5.184287 GCCCTCTACCTATAGAAGTAAGCAG 59.816 48.000 0.00 0.00 36.98 4.24
340 351 4.815269 AGCAGAGTTCAATCTACAGTGAC 58.185 43.478 0.00 0.00 0.00 3.67
358 369 5.160699 GTGACATGCACTAATACACATGG 57.839 43.478 11.51 0.00 43.28 3.66
373 384 3.503363 ACACATGGCTGTACAACTCAATG 59.497 43.478 0.00 1.50 33.14 2.82
375 386 1.155889 TGGCTGTACAACTCAATGCG 58.844 50.000 0.00 0.00 0.00 4.73
396 407 3.665848 CGATTGATAAACAAACACGGCGT 60.666 43.478 6.77 6.77 42.03 5.68
409 420 2.743752 CGGCGTGATCAGTTGCCTG 61.744 63.158 23.67 16.24 45.36 4.85
413 424 0.798776 CGTGATCAGTTGCCTGGAAC 59.201 55.000 0.00 0.00 39.31 3.62
414 425 1.609061 CGTGATCAGTTGCCTGGAACT 60.609 52.381 0.00 1.66 39.31 3.01
415 426 2.508526 GTGATCAGTTGCCTGGAACTT 58.491 47.619 0.00 0.00 39.31 2.66
416 427 3.674997 GTGATCAGTTGCCTGGAACTTA 58.325 45.455 0.00 0.00 39.31 2.24
417 428 4.265073 GTGATCAGTTGCCTGGAACTTAT 58.735 43.478 0.00 0.00 39.31 1.73
418 429 5.428253 GTGATCAGTTGCCTGGAACTTATA 58.572 41.667 0.00 0.00 39.31 0.98
419 430 5.294552 GTGATCAGTTGCCTGGAACTTATAC 59.705 44.000 0.00 0.00 39.31 1.47
423 434 5.482526 TCAGTTGCCTGGAACTTATACACTA 59.517 40.000 0.00 0.00 39.31 2.74
426 437 7.336931 CAGTTGCCTGGAACTTATACACTAATT 59.663 37.037 0.00 0.00 33.75 1.40
433 444 8.208718 TGGAACTTATACACTAATTCACATGC 57.791 34.615 0.00 0.00 0.00 4.06
452 463 1.947678 GCCTGTACAGCTCAATGCAGT 60.948 52.381 17.86 0.00 45.94 4.40
465 476 3.441222 TCAATGCAGTTGATAAGCACAGG 59.559 43.478 7.27 0.00 41.79 4.00
485 526 2.043227 GGAGATCAGTTGTCTAGGGGG 58.957 57.143 0.00 0.00 0.00 5.40
520 561 4.219507 TCAACTCACCAGAATCTCTCAGAC 59.780 45.833 0.00 0.00 0.00 3.51
521 562 3.772387 ACTCACCAGAATCTCTCAGACA 58.228 45.455 0.00 0.00 0.00 3.41
522 563 4.155709 ACTCACCAGAATCTCTCAGACAA 58.844 43.478 0.00 0.00 0.00 3.18
556 609 1.839994 CCCAGGGCTAGACAAATCAGA 59.160 52.381 0.00 0.00 0.00 3.27
625 687 0.322816 GTGGCTGAGCAAATCCCAGA 60.323 55.000 6.82 0.00 0.00 3.86
626 688 0.034767 TGGCTGAGCAAATCCCAGAG 60.035 55.000 6.82 0.00 0.00 3.35
628 690 1.382692 GCTGAGCAAATCCCAGAGGC 61.383 60.000 0.00 0.00 0.00 4.70
636 698 3.893813 GCAAATCCCAGAGGCAAATATCT 59.106 43.478 0.00 0.00 0.00 1.98
638 700 5.135383 CAAATCCCAGAGGCAAATATCTCA 58.865 41.667 0.00 0.00 32.76 3.27
639 701 5.393068 AATCCCAGAGGCAAATATCTCAA 57.607 39.130 0.00 0.00 32.76 3.02
640 702 5.595814 ATCCCAGAGGCAAATATCTCAAT 57.404 39.130 0.00 0.00 32.76 2.57
641 703 6.708885 ATCCCAGAGGCAAATATCTCAATA 57.291 37.500 0.00 0.00 32.76 1.90
647 709 6.938596 CAGAGGCAAATATCTCAATATCACCA 59.061 38.462 0.00 0.00 32.76 4.17
705 767 0.712380 ATTTTGGAGACATGGCCCCT 59.288 50.000 0.00 0.00 42.32 4.79
727 789 5.352569 CCTAAGATCTTGCATCAAAGTTCGT 59.647 40.000 18.47 0.00 33.14 3.85
900 967 3.587506 GCTCCTTCCCTATATAAAGCCCA 59.412 47.826 0.00 0.00 0.00 5.36
972 1052 5.489792 AACAGGAACTCTATTCTGAAGCA 57.510 39.130 0.00 0.00 34.60 3.91
1233 1318 5.566623 TCGATTCGTTCATGTGTAGTACTC 58.433 41.667 0.00 0.00 0.00 2.59
1311 1397 3.760151 AGCTTGATATTCTTGCTGTGCAA 59.240 39.130 4.87 4.87 46.80 4.08
1324 1410 2.357009 GCTGTGCAATTGGTAGATCAGG 59.643 50.000 7.72 0.00 0.00 3.86
1343 1440 7.778853 AGATCAGGAATGCAATATCTGAACTTT 59.221 33.333 13.61 1.70 36.20 2.66
1344 1441 7.707624 TCAGGAATGCAATATCTGAACTTTT 57.292 32.000 9.08 0.00 34.21 2.27
1345 1442 7.765307 TCAGGAATGCAATATCTGAACTTTTC 58.235 34.615 9.08 0.00 34.21 2.29
1346 1443 6.976925 CAGGAATGCAATATCTGAACTTTTCC 59.023 38.462 0.00 0.00 30.96 3.13
1347 1444 6.894103 AGGAATGCAATATCTGAACTTTTCCT 59.106 34.615 4.03 4.03 35.57 3.36
1348 1445 8.055181 AGGAATGCAATATCTGAACTTTTCCTA 58.945 33.333 7.45 0.00 37.92 2.94
1349 1446 8.131731 GGAATGCAATATCTGAACTTTTCCTAC 58.868 37.037 0.00 0.00 0.00 3.18
1350 1447 8.579850 AATGCAATATCTGAACTTTTCCTACA 57.420 30.769 0.00 0.00 0.00 2.74
1351 1448 7.377766 TGCAATATCTGAACTTTTCCTACAC 57.622 36.000 0.00 0.00 0.00 2.90
1352 1449 7.168219 TGCAATATCTGAACTTTTCCTACACT 58.832 34.615 0.00 0.00 0.00 3.55
1353 1450 7.665559 TGCAATATCTGAACTTTTCCTACACTT 59.334 33.333 0.00 0.00 0.00 3.16
1363 1460 3.328382 TTCCTACACTTGATCGGTTGG 57.672 47.619 0.00 0.00 0.00 3.77
1415 1512 5.705441 TGCAGTATCTTGGGTTACTTTCTTG 59.295 40.000 0.00 0.00 0.00 3.02
1511 1608 4.377021 TCGTAATATTTGCTGCCGATCTT 58.623 39.130 0.00 0.00 0.00 2.40
1521 1618 2.934364 GCTGCCGATCTTCCCATGATAG 60.934 54.545 0.00 0.00 0.00 2.08
1629 1727 3.274288 GCCTTGACTCCTTACCAGATTG 58.726 50.000 0.00 0.00 0.00 2.67
1727 1830 1.699656 CGGTTGGCTGCAGAAGATCG 61.700 60.000 20.43 9.89 0.00 3.69
1766 1869 1.153568 GCACCGCAGATGCTGTCTA 60.154 57.895 2.95 0.00 36.34 2.59
1767 1870 1.150567 GCACCGCAGATGCTGTCTAG 61.151 60.000 2.95 0.00 36.34 2.43
1768 1871 0.174389 CACCGCAGATGCTGTCTAGT 59.826 55.000 2.95 0.00 36.34 2.57
1769 1872 0.174389 ACCGCAGATGCTGTCTAGTG 59.826 55.000 2.95 0.00 33.11 2.74
1770 1873 0.174389 CCGCAGATGCTGTCTAGTGT 59.826 55.000 2.95 0.00 39.32 3.55
1771 1874 1.554392 CGCAGATGCTGTCTAGTGTC 58.446 55.000 2.95 0.00 39.32 3.67
1772 1875 1.133982 CGCAGATGCTGTCTAGTGTCT 59.866 52.381 2.95 0.00 39.32 3.41
1773 1876 2.356069 CGCAGATGCTGTCTAGTGTCTA 59.644 50.000 2.95 0.00 39.32 2.59
1774 1877 3.547813 CGCAGATGCTGTCTAGTGTCTAG 60.548 52.174 2.95 0.00 39.32 2.43
1778 1881 3.722908 TGCTGTCTAGTGTCTAGAGGT 57.277 47.619 6.72 0.00 0.00 3.85
1790 1893 4.072131 TGTCTAGAGGTGCCAAAATGTTC 58.928 43.478 0.00 0.00 0.00 3.18
1793 1896 3.515602 AGAGGTGCCAAAATGTTCTCT 57.484 42.857 0.00 0.00 0.00 3.10
1796 1899 4.042187 AGAGGTGCCAAAATGTTCTCTAGT 59.958 41.667 0.00 0.00 0.00 2.57
1843 1946 2.383527 GCACTGCACACTCTACGCC 61.384 63.158 0.00 0.00 0.00 5.68
1871 1974 7.497595 TCCGTATTCTGGGCAATGTATATATC 58.502 38.462 0.00 0.00 0.00 1.63
1873 1976 6.706270 CGTATTCTGGGCAATGTATATATCCC 59.294 42.308 0.00 0.58 0.00 3.85
1879 1982 5.045213 TGGGCAATGTATATATCCCGATGTT 60.045 40.000 0.00 0.00 36.56 2.71
1883 1986 8.774586 GGCAATGTATATATCCCGATGTTATTC 58.225 37.037 0.00 0.00 0.00 1.75
1919 2022 8.934023 ATATCAAAAACACTCCCTCTGTAAAA 57.066 30.769 0.00 0.00 0.00 1.52
1920 2023 7.654022 ATCAAAAACACTCCCTCTGTAAAAA 57.346 32.000 0.00 0.00 0.00 1.94
1952 2055 7.932120 GAGCGCTCTCTTATATTTCTTTACA 57.068 36.000 29.88 0.00 36.42 2.41
1953 2056 8.527567 GAGCGCTCTCTTATATTTCTTTACAT 57.472 34.615 29.88 0.00 36.42 2.29
1954 2057 8.304202 AGCGCTCTCTTATATTTCTTTACATG 57.696 34.615 2.64 0.00 0.00 3.21
1955 2058 8.144478 AGCGCTCTCTTATATTTCTTTACATGA 58.856 33.333 2.64 0.00 0.00 3.07
1956 2059 8.217778 GCGCTCTCTTATATTTCTTTACATGAC 58.782 37.037 0.00 0.00 0.00 3.06
1957 2060 8.420945 CGCTCTCTTATATTTCTTTACATGACG 58.579 37.037 0.00 0.00 0.00 4.35
1958 2061 8.217778 GCTCTCTTATATTTCTTTACATGACGC 58.782 37.037 0.00 0.00 0.00 5.19
1959 2062 8.282124 TCTCTTATATTTCTTTACATGACGCG 57.718 34.615 3.53 3.53 0.00 6.01
1960 2063 8.132995 TCTCTTATATTTCTTTACATGACGCGA 58.867 33.333 15.93 0.00 0.00 5.87
1961 2064 8.057812 TCTTATATTTCTTTACATGACGCGAC 57.942 34.615 15.93 7.62 0.00 5.19
1962 2065 7.919091 TCTTATATTTCTTTACATGACGCGACT 59.081 33.333 15.93 0.00 0.00 4.18
1963 2066 9.177304 CTTATATTTCTTTACATGACGCGACTA 57.823 33.333 15.93 0.00 0.00 2.59
1964 2067 7.997107 ATATTTCTTTACATGACGCGACTAA 57.003 32.000 15.93 0.00 0.00 2.24
1965 2068 5.505165 TTTCTTTACATGACGCGACTAAC 57.495 39.130 15.93 0.00 0.00 2.34
1966 2069 4.430137 TCTTTACATGACGCGACTAACT 57.570 40.909 15.93 0.00 0.00 2.24
1967 2070 4.801891 TCTTTACATGACGCGACTAACTT 58.198 39.130 15.93 0.00 0.00 2.66
1968 2071 4.855388 TCTTTACATGACGCGACTAACTTC 59.145 41.667 15.93 0.00 0.00 3.01
1969 2072 1.992170 ACATGACGCGACTAACTTCC 58.008 50.000 15.93 0.00 0.00 3.46
1970 2073 1.271379 ACATGACGCGACTAACTTCCA 59.729 47.619 15.93 0.00 0.00 3.53
1971 2074 1.920574 CATGACGCGACTAACTTCCAG 59.079 52.381 15.93 0.00 0.00 3.86
1972 2075 1.241165 TGACGCGACTAACTTCCAGA 58.759 50.000 15.93 0.00 0.00 3.86
1973 2076 1.816835 TGACGCGACTAACTTCCAGAT 59.183 47.619 15.93 0.00 0.00 2.90
1974 2077 2.186076 GACGCGACTAACTTCCAGATG 58.814 52.381 15.93 0.00 0.00 2.90
1975 2078 1.544691 ACGCGACTAACTTCCAGATGT 59.455 47.619 15.93 0.00 0.00 3.06
1976 2079 2.751259 ACGCGACTAACTTCCAGATGTA 59.249 45.455 15.93 0.00 0.00 2.29
1977 2080 3.106672 CGCGACTAACTTCCAGATGTAC 58.893 50.000 0.00 0.00 0.00 2.90
1978 2081 3.181499 CGCGACTAACTTCCAGATGTACT 60.181 47.826 0.00 0.00 0.00 2.73
1979 2082 4.106197 GCGACTAACTTCCAGATGTACTG 58.894 47.826 0.00 0.00 45.36 2.74
2004 2107 9.383519 TGATTTTAAGAACAGATACAGATGACC 57.616 33.333 0.00 0.00 0.00 4.02
2005 2108 8.738645 ATTTTAAGAACAGATACAGATGACCC 57.261 34.615 0.00 0.00 0.00 4.46
2006 2109 6.867519 TTAAGAACAGATACAGATGACCCA 57.132 37.500 0.00 0.00 0.00 4.51
2007 2110 5.965033 AAGAACAGATACAGATGACCCAT 57.035 39.130 0.00 0.00 0.00 4.00
2008 2111 8.547481 TTAAGAACAGATACAGATGACCCATA 57.453 34.615 0.00 0.00 0.00 2.74
2009 2112 6.412362 AGAACAGATACAGATGACCCATAC 57.588 41.667 0.00 0.00 0.00 2.39
2010 2113 6.139671 AGAACAGATACAGATGACCCATACT 58.860 40.000 0.00 0.00 0.00 2.12
2011 2114 7.298374 AGAACAGATACAGATGACCCATACTA 58.702 38.462 0.00 0.00 0.00 1.82
2012 2115 7.450014 AGAACAGATACAGATGACCCATACTAG 59.550 40.741 0.00 0.00 0.00 2.57
2013 2116 5.478679 ACAGATACAGATGACCCATACTAGC 59.521 44.000 0.00 0.00 0.00 3.42
2014 2117 5.714333 CAGATACAGATGACCCATACTAGCT 59.286 44.000 0.00 0.00 0.00 3.32
2015 2118 6.210385 CAGATACAGATGACCCATACTAGCTT 59.790 42.308 0.00 0.00 0.00 3.74
2016 2119 6.784969 AGATACAGATGACCCATACTAGCTTT 59.215 38.462 0.00 0.00 0.00 3.51
2017 2120 5.028549 ACAGATGACCCATACTAGCTTTG 57.971 43.478 0.00 0.00 0.00 2.77
2018 2121 4.716784 ACAGATGACCCATACTAGCTTTGA 59.283 41.667 0.00 0.00 0.00 2.69
2019 2122 5.367937 ACAGATGACCCATACTAGCTTTGAT 59.632 40.000 0.00 0.00 0.00 2.57
2020 2123 5.931146 CAGATGACCCATACTAGCTTTGATC 59.069 44.000 0.00 0.00 0.00 2.92
2021 2124 5.843421 AGATGACCCATACTAGCTTTGATCT 59.157 40.000 0.00 0.00 0.00 2.75
2022 2125 5.282055 TGACCCATACTAGCTTTGATCTG 57.718 43.478 0.00 0.00 0.00 2.90
2023 2126 4.061596 GACCCATACTAGCTTTGATCTGC 58.938 47.826 0.00 0.00 0.00 4.26
2024 2127 3.713764 ACCCATACTAGCTTTGATCTGCT 59.286 43.478 11.75 11.75 42.67 4.24
2025 2128 4.063689 CCCATACTAGCTTTGATCTGCTG 58.936 47.826 15.22 9.59 40.08 4.41
2026 2129 3.497640 CCATACTAGCTTTGATCTGCTGC 59.502 47.826 15.22 0.00 40.08 5.25
2027 2130 2.775911 ACTAGCTTTGATCTGCTGCA 57.224 45.000 15.22 0.88 40.08 4.41
2028 2131 3.278668 ACTAGCTTTGATCTGCTGCAT 57.721 42.857 1.31 0.00 40.08 3.96
2029 2132 2.943690 ACTAGCTTTGATCTGCTGCATG 59.056 45.455 1.31 0.00 40.08 4.06
2030 2133 0.456221 AGCTTTGATCTGCTGCATGC 59.544 50.000 11.82 11.82 38.21 4.06
2039 2142 4.631773 GCTGCATGCAAGAGGAGA 57.368 55.556 22.88 0.00 42.31 3.71
2040 2143 2.395651 GCTGCATGCAAGAGGAGAG 58.604 57.895 22.88 8.40 42.31 3.20
2041 2144 0.392729 GCTGCATGCAAGAGGAGAGT 60.393 55.000 22.88 0.00 42.31 3.24
2042 2145 1.370609 CTGCATGCAAGAGGAGAGTG 58.629 55.000 22.88 1.53 0.00 3.51
2043 2146 0.978907 TGCATGCAAGAGGAGAGTGA 59.021 50.000 20.30 0.00 0.00 3.41
2044 2147 1.066358 TGCATGCAAGAGGAGAGTGAG 60.066 52.381 20.30 0.00 0.00 3.51
2045 2148 1.743091 GCATGCAAGAGGAGAGTGAGG 60.743 57.143 14.21 0.00 0.00 3.86
2046 2149 0.540923 ATGCAAGAGGAGAGTGAGGC 59.459 55.000 0.00 0.00 0.00 4.70
2047 2150 0.543883 TGCAAGAGGAGAGTGAGGCT 60.544 55.000 0.00 0.00 0.00 4.58
2048 2151 0.175531 GCAAGAGGAGAGTGAGGCTC 59.824 60.000 7.79 7.79 44.45 4.70
2049 2152 1.554836 CAAGAGGAGAGTGAGGCTCA 58.445 55.000 14.43 14.43 46.47 4.26
2050 2153 1.477700 CAAGAGGAGAGTGAGGCTCAG 59.522 57.143 19.38 0.00 46.47 3.35
2051 2154 0.033208 AGAGGAGAGTGAGGCTCAGG 60.033 60.000 19.38 0.00 46.47 3.86
2052 2155 1.675720 GAGGAGAGTGAGGCTCAGGC 61.676 65.000 19.38 12.82 46.47 4.85
2053 2156 1.986757 GGAGAGTGAGGCTCAGGCA 60.987 63.158 19.38 0.00 46.47 4.75
2054 2157 1.336632 GGAGAGTGAGGCTCAGGCAT 61.337 60.000 19.38 4.18 46.47 4.40
2055 2158 0.179078 GAGAGTGAGGCTCAGGCATG 60.179 60.000 19.38 0.00 46.47 4.06
2056 2159 1.818785 GAGTGAGGCTCAGGCATGC 60.819 63.158 19.38 9.90 43.58 4.06
2057 2160 2.045634 GTGAGGCTCAGGCATGCA 60.046 61.111 19.38 0.00 40.87 3.96
2058 2161 1.453379 GTGAGGCTCAGGCATGCAT 60.453 57.895 19.38 10.32 40.87 3.96
2059 2162 1.453197 TGAGGCTCAGGCATGCATG 60.453 57.895 25.78 25.78 40.87 4.06
2083 2186 3.260483 GCATGAGGCGCGAGTGAG 61.260 66.667 12.10 0.00 0.00 3.51
2084 2187 3.260483 CATGAGGCGCGAGTGAGC 61.260 66.667 12.10 0.00 40.57 4.26
2085 2188 3.763356 ATGAGGCGCGAGTGAGCA 61.763 61.111 12.10 0.00 43.42 4.26
2086 2189 3.997064 ATGAGGCGCGAGTGAGCAC 62.997 63.158 12.10 0.00 43.42 4.40
2090 2193 4.724602 GCGCGAGTGAGCACCTCA 62.725 66.667 12.10 0.00 41.01 3.86
2091 2194 2.182791 CGCGAGTGAGCACCTCAT 59.817 61.111 0.00 0.00 42.73 2.90
2092 2195 1.446792 CGCGAGTGAGCACCTCATT 60.447 57.895 0.00 0.00 42.73 2.57
2093 2196 1.016130 CGCGAGTGAGCACCTCATTT 61.016 55.000 0.00 0.00 42.73 2.32
2094 2197 1.160137 GCGAGTGAGCACCTCATTTT 58.840 50.000 0.00 0.00 42.73 1.82
2095 2198 1.537202 GCGAGTGAGCACCTCATTTTT 59.463 47.619 0.00 0.00 42.73 1.94
2117 2220 8.417780 TTTTTAACATGCATGCATATACCAAC 57.582 30.769 31.73 0.00 34.91 3.77
2118 2221 6.705863 TTAACATGCATGCATATACCAACA 57.294 33.333 31.73 10.55 34.91 3.33
2119 2222 5.595257 AACATGCATGCATATACCAACAA 57.405 34.783 31.73 0.00 34.91 2.83
2120 2223 5.595257 ACATGCATGCATATACCAACAAA 57.405 34.783 31.73 0.00 34.91 2.83
2121 2224 6.164417 ACATGCATGCATATACCAACAAAT 57.836 33.333 31.73 4.16 34.91 2.32
2122 2225 6.584488 ACATGCATGCATATACCAACAAATT 58.416 32.000 31.73 3.67 34.91 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.048601 CGTACTGATAGGTGCCCCAT 58.951 55.000 0.00 0.00 0.00 4.00
1 2 1.046472 CCGTACTGATAGGTGCCCCA 61.046 60.000 0.00 0.00 0.00 4.96
3 4 1.069258 GCCGTACTGATAGGTGCCC 59.931 63.158 0.00 0.00 0.00 5.36
4 5 1.299926 CGCCGTACTGATAGGTGCC 60.300 63.158 0.00 0.00 0.00 5.01
5 6 4.320971 CGCCGTACTGATAGGTGC 57.679 61.111 0.00 0.00 0.00 5.01
6 7 0.870307 GTGCGCCGTACTGATAGGTG 60.870 60.000 4.18 0.00 38.48 4.00
7 8 1.035932 AGTGCGCCGTACTGATAGGT 61.036 55.000 7.15 0.00 0.00 3.08
8 9 0.317938 GAGTGCGCCGTACTGATAGG 60.318 60.000 13.80 0.00 0.00 2.57
9 10 0.317938 GGAGTGCGCCGTACTGATAG 60.318 60.000 13.80 0.00 0.00 2.08
10 11 0.750546 AGGAGTGCGCCGTACTGATA 60.751 55.000 13.80 0.00 0.00 2.15
11 12 2.005960 GAGGAGTGCGCCGTACTGAT 62.006 60.000 13.80 0.00 0.00 2.90
12 13 2.675423 AGGAGTGCGCCGTACTGA 60.675 61.111 13.80 0.00 0.00 3.41
13 14 2.202623 GAGGAGTGCGCCGTACTG 60.203 66.667 13.80 0.00 0.00 2.74
14 15 2.273179 TTGAGGAGTGCGCCGTACT 61.273 57.895 7.79 7.79 0.00 2.73
15 16 2.092882 GTTGAGGAGTGCGCCGTAC 61.093 63.158 4.18 0.00 0.00 3.67
16 17 2.260434 GTTGAGGAGTGCGCCGTA 59.740 61.111 4.18 0.00 0.00 4.02
17 18 4.681978 GGTTGAGGAGTGCGCCGT 62.682 66.667 4.18 0.00 0.00 5.68
18 19 4.680237 TGGTTGAGGAGTGCGCCG 62.680 66.667 4.18 0.00 0.00 6.46
19 20 2.743928 CTGGTTGAGGAGTGCGCC 60.744 66.667 4.18 0.00 0.00 6.53
20 21 2.743928 CCTGGTTGAGGAGTGCGC 60.744 66.667 0.00 0.00 46.33 6.09
21 22 3.059982 TCCTGGTTGAGGAGTGCG 58.940 61.111 0.00 0.00 46.96 5.34
27 28 1.218316 GTAGGCGTCCTGGTTGAGG 59.782 63.158 8.44 0.00 44.45 3.86
28 29 1.218316 GGTAGGCGTCCTGGTTGAG 59.782 63.158 8.44 0.00 34.61 3.02
29 30 2.642254 CGGTAGGCGTCCTGGTTGA 61.642 63.158 8.44 0.00 34.61 3.18
30 31 2.125673 CGGTAGGCGTCCTGGTTG 60.126 66.667 8.44 0.00 34.61 3.77
31 32 3.387947 CCGGTAGGCGTCCTGGTT 61.388 66.667 8.44 0.00 34.61 3.67
34 35 1.831286 ATACCCGGTAGGCGTCCTG 60.831 63.158 0.00 0.00 40.58 3.86
35 36 1.831286 CATACCCGGTAGGCGTCCT 60.831 63.158 0.00 3.87 40.58 3.85
36 37 1.803366 CTCATACCCGGTAGGCGTCC 61.803 65.000 4.27 0.00 40.58 4.79
37 38 1.658673 CTCATACCCGGTAGGCGTC 59.341 63.158 4.27 0.00 40.58 5.19
38 39 2.496291 GCTCATACCCGGTAGGCGT 61.496 63.158 4.27 0.00 40.58 5.68
39 40 2.338984 GCTCATACCCGGTAGGCG 59.661 66.667 4.27 0.00 40.58 5.52
40 41 2.741747 GGCTCATACCCGGTAGGC 59.258 66.667 4.27 7.69 40.58 3.93
41 42 3.468063 GGGCTCATACCCGGTAGG 58.532 66.667 0.00 2.65 40.98 3.18
48 49 2.513897 GTGCGGTGGGCTCATACC 60.514 66.667 0.00 0.00 44.05 2.73
49 50 2.513897 GGTGCGGTGGGCTCATAC 60.514 66.667 0.00 0.00 44.05 2.39
50 51 2.687200 AGGTGCGGTGGGCTCATA 60.687 61.111 0.00 0.00 44.05 2.15
51 52 4.415150 CAGGTGCGGTGGGCTCAT 62.415 66.667 0.00 0.00 44.05 2.90
59 60 4.284550 ATTGGTGGCAGGTGCGGT 62.285 61.111 0.00 0.00 43.26 5.68
60 61 3.443045 GATTGGTGGCAGGTGCGG 61.443 66.667 0.00 0.00 43.26 5.69
61 62 3.443045 GGATTGGTGGCAGGTGCG 61.443 66.667 0.00 0.00 43.26 5.34
62 63 1.669999 GATGGATTGGTGGCAGGTGC 61.670 60.000 0.00 0.00 41.14 5.01
63 64 0.033796 AGATGGATTGGTGGCAGGTG 60.034 55.000 0.00 0.00 0.00 4.00
64 65 0.706433 AAGATGGATTGGTGGCAGGT 59.294 50.000 0.00 0.00 0.00 4.00
65 66 1.341285 TGAAGATGGATTGGTGGCAGG 60.341 52.381 0.00 0.00 0.00 4.85
66 67 2.022195 CTGAAGATGGATTGGTGGCAG 58.978 52.381 0.00 0.00 0.00 4.85
67 68 1.634973 TCTGAAGATGGATTGGTGGCA 59.365 47.619 0.00 0.00 0.00 4.92
68 69 2.295885 CTCTGAAGATGGATTGGTGGC 58.704 52.381 0.00 0.00 0.00 5.01
69 70 2.092538 AGCTCTGAAGATGGATTGGTGG 60.093 50.000 0.00 0.00 0.00 4.61
70 71 2.943690 CAGCTCTGAAGATGGATTGGTG 59.056 50.000 0.00 0.00 35.22 4.17
71 72 2.575279 ACAGCTCTGAAGATGGATTGGT 59.425 45.455 3.60 0.00 43.33 3.67
72 73 3.278668 ACAGCTCTGAAGATGGATTGG 57.721 47.619 3.60 0.00 43.33 3.16
73 74 4.809958 CAGTACAGCTCTGAAGATGGATTG 59.190 45.833 3.60 0.00 43.33 2.67
74 75 4.469227 ACAGTACAGCTCTGAAGATGGATT 59.531 41.667 7.84 0.00 43.33 3.01
75 76 4.029520 ACAGTACAGCTCTGAAGATGGAT 58.970 43.478 7.84 0.00 43.33 3.41
76 77 3.435275 ACAGTACAGCTCTGAAGATGGA 58.565 45.455 7.84 0.00 43.33 3.41
77 78 3.883830 ACAGTACAGCTCTGAAGATGG 57.116 47.619 7.84 0.00 43.33 3.51
78 79 3.370366 GCAACAGTACAGCTCTGAAGATG 59.630 47.826 7.84 0.00 44.61 2.90
79 80 3.007290 TGCAACAGTACAGCTCTGAAGAT 59.993 43.478 7.84 0.00 36.81 2.40
80 81 2.365293 TGCAACAGTACAGCTCTGAAGA 59.635 45.455 7.84 0.00 36.81 2.87
81 82 2.759191 TGCAACAGTACAGCTCTGAAG 58.241 47.619 7.84 1.57 36.81 3.02
82 83 2.908688 TGCAACAGTACAGCTCTGAA 57.091 45.000 7.84 0.00 36.81 3.02
83 84 2.037641 ACATGCAACAGTACAGCTCTGA 59.962 45.455 7.84 0.00 36.81 3.27
84 85 2.420642 ACATGCAACAGTACAGCTCTG 58.579 47.619 0.00 0.00 38.68 3.35
85 86 2.847327 ACATGCAACAGTACAGCTCT 57.153 45.000 0.00 0.00 0.00 4.09
86 87 2.673368 GGTACATGCAACAGTACAGCTC 59.327 50.000 21.40 7.37 41.74 4.09
87 88 2.699954 GGTACATGCAACAGTACAGCT 58.300 47.619 21.40 0.00 41.74 4.24
88 89 1.393539 CGGTACATGCAACAGTACAGC 59.606 52.381 21.40 9.92 41.74 4.40
89 90 2.411748 CACGGTACATGCAACAGTACAG 59.588 50.000 21.40 20.00 41.74 2.74
90 91 2.224090 ACACGGTACATGCAACAGTACA 60.224 45.455 21.40 0.00 41.74 2.90
91 92 2.409975 ACACGGTACATGCAACAGTAC 58.590 47.619 15.23 15.23 39.80 2.73
92 93 2.036089 TGACACGGTACATGCAACAGTA 59.964 45.455 0.00 0.00 0.00 2.74
93 94 1.202592 TGACACGGTACATGCAACAGT 60.203 47.619 0.00 0.00 0.00 3.55
94 95 1.460743 CTGACACGGTACATGCAACAG 59.539 52.381 0.00 0.00 0.00 3.16
95 96 1.507562 CTGACACGGTACATGCAACA 58.492 50.000 0.00 0.00 0.00 3.33
96 97 0.796312 CCTGACACGGTACATGCAAC 59.204 55.000 0.00 0.00 0.00 4.17
97 98 0.394938 ACCTGACACGGTACATGCAA 59.605 50.000 0.00 0.00 34.94 4.08
98 99 0.037697 GACCTGACACGGTACATGCA 60.038 55.000 0.00 0.00 37.42 3.96
99 100 0.246635 AGACCTGACACGGTACATGC 59.753 55.000 0.00 0.00 37.42 4.06
100 101 1.819288 AGAGACCTGACACGGTACATG 59.181 52.381 0.00 0.00 37.42 3.21
101 102 2.093106 GAGAGACCTGACACGGTACAT 58.907 52.381 0.00 0.00 37.42 2.29
102 103 1.073444 AGAGAGACCTGACACGGTACA 59.927 52.381 0.00 0.00 37.42 2.90
103 104 1.469308 CAGAGAGACCTGACACGGTAC 59.531 57.143 0.00 0.00 37.42 3.34
104 105 1.822506 CAGAGAGACCTGACACGGTA 58.177 55.000 0.00 0.00 37.42 4.02
105 106 1.528292 GCAGAGAGACCTGACACGGT 61.528 60.000 0.00 0.00 40.80 4.83
106 107 1.214062 GCAGAGAGACCTGACACGG 59.786 63.158 0.00 0.00 36.29 4.94
107 108 1.214062 GGCAGAGAGACCTGACACG 59.786 63.158 0.00 0.00 41.78 4.49
108 109 2.355946 TGGCAGAGAGACCTGACAC 58.644 57.895 0.00 0.00 46.52 3.67
110 111 0.102120 CGATGGCAGAGAGACCTGAC 59.898 60.000 0.00 0.00 42.50 3.51
111 112 0.034089 TCGATGGCAGAGAGACCTGA 60.034 55.000 0.00 0.00 36.29 3.86
112 113 0.102120 GTCGATGGCAGAGAGACCTG 59.898 60.000 0.00 0.00 37.23 4.00
113 114 1.380403 CGTCGATGGCAGAGAGACCT 61.380 60.000 0.00 0.00 0.00 3.85
114 115 1.064946 CGTCGATGGCAGAGAGACC 59.935 63.158 0.00 0.00 0.00 3.85
115 116 1.587613 GCGTCGATGGCAGAGAGAC 60.588 63.158 6.79 0.00 0.00 3.36
116 117 2.775856 GGCGTCGATGGCAGAGAGA 61.776 63.158 24.90 0.00 0.00 3.10
117 118 2.279120 GGCGTCGATGGCAGAGAG 60.279 66.667 24.90 0.00 0.00 3.20
118 119 3.068064 TGGCGTCGATGGCAGAGA 61.068 61.111 28.12 7.32 39.79 3.10
119 120 2.887568 GTGGCGTCGATGGCAGAG 60.888 66.667 31.74 0.00 45.88 3.35
120 121 4.451150 GGTGGCGTCGATGGCAGA 62.451 66.667 31.74 10.62 45.88 4.26
121 122 4.758251 TGGTGGCGTCGATGGCAG 62.758 66.667 31.74 2.43 45.88 4.85
124 125 4.429212 TCGTGGTGGCGTCGATGG 62.429 66.667 6.79 0.00 0.00 3.51
125 126 3.179265 GTCGTGGTGGCGTCGATG 61.179 66.667 0.00 0.00 36.08 3.84
126 127 4.771356 CGTCGTGGTGGCGTCGAT 62.771 66.667 0.00 0.00 43.57 3.59
144 145 4.570663 GAGGATGACGCCGTCGGG 62.571 72.222 14.38 5.79 40.69 5.14
145 146 4.570663 GGAGGATGACGCCGTCGG 62.571 72.222 13.18 6.99 40.69 4.79
146 147 3.518998 AGGAGGATGACGCCGTCG 61.519 66.667 13.18 0.00 44.78 5.12
147 148 2.105128 CAGGAGGATGACGCCGTC 59.895 66.667 10.96 10.96 44.78 4.79
148 149 4.148825 GCAGGAGGATGACGCCGT 62.149 66.667 0.00 0.00 44.78 5.68
152 153 4.193334 TCGCGCAGGAGGATGACG 62.193 66.667 8.75 0.00 0.00 4.35
153 154 2.279120 CTCGCGCAGGAGGATGAC 60.279 66.667 8.75 0.00 0.00 3.06
154 155 2.755876 ACTCGCGCAGGAGGATGA 60.756 61.111 15.41 0.00 38.39 2.92
155 156 2.279120 GACTCGCGCAGGAGGATG 60.279 66.667 15.41 0.00 38.39 3.51
156 157 3.532155 GGACTCGCGCAGGAGGAT 61.532 66.667 15.41 0.00 38.39 3.24
158 159 3.781770 GATGGACTCGCGCAGGAGG 62.782 68.421 15.41 0.00 38.39 4.30
159 160 2.279120 GATGGACTCGCGCAGGAG 60.279 66.667 8.75 9.70 39.97 3.69
160 161 3.838271 GGATGGACTCGCGCAGGA 61.838 66.667 8.75 0.00 0.00 3.86
161 162 3.781770 GAGGATGGACTCGCGCAGG 62.782 68.421 8.75 0.80 0.00 4.85
162 163 2.279120 GAGGATGGACTCGCGCAG 60.279 66.667 8.75 6.77 0.00 5.18
163 164 3.838271 GGAGGATGGACTCGCGCA 61.838 66.667 8.75 0.00 38.39 6.09
164 165 4.593864 GGGAGGATGGACTCGCGC 62.594 72.222 0.00 0.00 40.01 6.86
166 167 2.303549 CTGTGGGAGGATGGACTCGC 62.304 65.000 0.00 0.00 46.93 5.03
167 168 1.819229 CTGTGGGAGGATGGACTCG 59.181 63.158 0.00 0.00 38.39 4.18
168 169 1.524482 GCTGTGGGAGGATGGACTC 59.476 63.158 0.00 0.00 36.76 3.36
169 170 2.362369 CGCTGTGGGAGGATGGACT 61.362 63.158 0.00 0.00 0.00 3.85
170 171 1.899437 TTCGCTGTGGGAGGATGGAC 61.899 60.000 0.00 0.00 0.00 4.02
171 172 1.612146 TTCGCTGTGGGAGGATGGA 60.612 57.895 0.00 0.00 0.00 3.41
172 173 1.450312 GTTCGCTGTGGGAGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
173 174 0.460987 GAGTTCGCTGTGGGAGGATG 60.461 60.000 0.00 0.00 0.00 3.51
174 175 1.617947 GGAGTTCGCTGTGGGAGGAT 61.618 60.000 0.00 0.00 0.00 3.24
175 176 2.283529 GGAGTTCGCTGTGGGAGGA 61.284 63.158 0.00 0.00 0.00 3.71
176 177 2.266055 GGAGTTCGCTGTGGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
177 178 2.125912 CGGAGTTCGCTGTGGGAG 60.126 66.667 0.00 0.00 0.00 4.30
178 179 1.541310 ATTCGGAGTTCGCTGTGGGA 61.541 55.000 0.00 0.00 39.05 4.37
179 180 1.079127 ATTCGGAGTTCGCTGTGGG 60.079 57.895 0.00 0.00 39.05 4.61
180 181 0.108615 AGATTCGGAGTTCGCTGTGG 60.109 55.000 0.00 0.00 39.05 4.17
181 182 2.561733 TAGATTCGGAGTTCGCTGTG 57.438 50.000 0.00 0.00 39.05 3.66
182 183 3.587797 TTTAGATTCGGAGTTCGCTGT 57.412 42.857 0.00 0.00 39.05 4.40
183 184 3.302740 GCATTTAGATTCGGAGTTCGCTG 60.303 47.826 0.00 0.00 39.05 5.18
184 185 2.866762 GCATTTAGATTCGGAGTTCGCT 59.133 45.455 0.00 0.00 39.05 4.93
185 186 2.607635 TGCATTTAGATTCGGAGTTCGC 59.392 45.455 0.00 0.00 39.05 4.70
186 187 3.865745 AGTGCATTTAGATTCGGAGTTCG 59.134 43.478 0.00 0.00 40.90 3.95
187 188 4.631813 ACAGTGCATTTAGATTCGGAGTTC 59.368 41.667 0.00 0.00 0.00 3.01
188 189 4.579869 ACAGTGCATTTAGATTCGGAGTT 58.420 39.130 0.00 0.00 0.00 3.01
189 190 4.081420 AGACAGTGCATTTAGATTCGGAGT 60.081 41.667 0.00 0.00 0.00 3.85
190 191 4.437239 AGACAGTGCATTTAGATTCGGAG 58.563 43.478 0.00 0.00 0.00 4.63
191 192 4.433615 GAGACAGTGCATTTAGATTCGGA 58.566 43.478 0.00 0.00 0.00 4.55
192 193 3.243877 CGAGACAGTGCATTTAGATTCGG 59.756 47.826 0.00 0.00 0.00 4.30
193 194 3.859961 ACGAGACAGTGCATTTAGATTCG 59.140 43.478 0.00 0.00 0.00 3.34
194 195 4.033358 CCACGAGACAGTGCATTTAGATTC 59.967 45.833 0.00 0.00 40.59 2.52
195 196 3.935203 CCACGAGACAGTGCATTTAGATT 59.065 43.478 0.00 0.00 40.59 2.40
196 197 3.055819 ACCACGAGACAGTGCATTTAGAT 60.056 43.478 0.00 0.00 40.59 1.98
197 198 2.299013 ACCACGAGACAGTGCATTTAGA 59.701 45.455 0.00 0.00 40.59 2.10
198 199 2.668457 GACCACGAGACAGTGCATTTAG 59.332 50.000 0.00 0.00 40.59 1.85
199 200 2.036604 TGACCACGAGACAGTGCATTTA 59.963 45.455 0.00 0.00 40.59 1.40
205 206 1.202417 AGTTGTGACCACGAGACAGTG 60.202 52.381 0.00 0.00 41.53 3.66
229 230 1.874019 CCACCGAGAGTGCGAATCG 60.874 63.158 0.00 0.00 45.83 3.34
230 231 2.167861 GCCACCGAGAGTGCGAATC 61.168 63.158 0.00 0.00 45.83 2.52
235 236 2.125753 CTGAGCCACCGAGAGTGC 60.126 66.667 0.00 0.00 45.83 4.40
243 246 1.492993 AAAGGAGGGACTGAGCCACC 61.493 60.000 0.00 0.00 41.55 4.61
271 278 5.979993 AGGATGCATGCATTTCACATTTTA 58.020 33.333 32.60 0.81 36.70 1.52
291 300 1.547099 ATAGGTAGAGGGCTGGAGGA 58.453 55.000 0.00 0.00 0.00 3.71
296 305 5.184287 GCTTACTTCTATAGGTAGAGGGCTG 59.816 48.000 0.00 0.00 38.11 4.85
297 306 5.162969 TGCTTACTTCTATAGGTAGAGGGCT 60.163 44.000 0.00 0.00 38.11 5.19
298 307 5.078256 TGCTTACTTCTATAGGTAGAGGGC 58.922 45.833 0.00 6.02 38.11 5.19
299 308 6.544650 TCTGCTTACTTCTATAGGTAGAGGG 58.455 44.000 0.00 0.00 38.11 4.30
300 309 7.228590 ACTCTGCTTACTTCTATAGGTAGAGG 58.771 42.308 17.36 0.00 41.95 3.69
301 310 8.685838 AACTCTGCTTACTTCTATAGGTAGAG 57.314 38.462 13.87 13.87 42.75 2.43
302 311 8.272889 TGAACTCTGCTTACTTCTATAGGTAGA 58.727 37.037 0.00 0.00 35.17 2.59
303 312 8.453238 TGAACTCTGCTTACTTCTATAGGTAG 57.547 38.462 0.00 0.86 0.00 3.18
315 324 6.309251 GTCACTGTAGATTGAACTCTGCTTAC 59.691 42.308 0.00 0.00 0.00 2.34
322 333 4.931601 TGCATGTCACTGTAGATTGAACTC 59.068 41.667 0.00 0.00 0.00 3.01
340 351 3.628942 ACAGCCATGTGTATTAGTGCATG 59.371 43.478 0.00 0.00 38.57 4.06
348 359 4.905429 TGAGTTGTACAGCCATGTGTATT 58.095 39.130 6.04 0.00 40.79 1.89
358 369 3.125146 TCAATCGCATTGAGTTGTACAGC 59.875 43.478 0.72 0.72 43.84 4.40
373 384 2.592459 GCCGTGTTTGTTTATCAATCGC 59.408 45.455 0.00 0.00 35.84 4.58
375 386 3.602062 CACGCCGTGTTTGTTTATCAATC 59.398 43.478 9.53 0.00 35.84 2.67
382 393 1.002900 CTGATCACGCCGTGTTTGTTT 60.003 47.619 17.83 0.00 34.79 2.83
383 394 0.586319 CTGATCACGCCGTGTTTGTT 59.414 50.000 17.83 0.00 34.79 2.83
384 395 0.531974 ACTGATCACGCCGTGTTTGT 60.532 50.000 17.83 9.21 34.79 2.83
385 396 0.586319 AACTGATCACGCCGTGTTTG 59.414 50.000 17.83 8.61 34.79 2.93
409 420 7.499232 AGGCATGTGAATTAGTGTATAAGTTCC 59.501 37.037 0.00 0.00 0.00 3.62
413 424 7.792374 ACAGGCATGTGAATTAGTGTATAAG 57.208 36.000 1.71 0.00 38.57 1.73
414 425 8.261522 TGTACAGGCATGTGAATTAGTGTATAA 58.738 33.333 15.48 0.00 40.79 0.98
415 426 7.787028 TGTACAGGCATGTGAATTAGTGTATA 58.213 34.615 15.48 0.00 40.79 1.47
416 427 6.649155 TGTACAGGCATGTGAATTAGTGTAT 58.351 36.000 15.48 0.00 40.79 2.29
417 428 6.043854 TGTACAGGCATGTGAATTAGTGTA 57.956 37.500 15.48 0.00 40.79 2.90
418 429 4.905429 TGTACAGGCATGTGAATTAGTGT 58.095 39.130 15.48 0.00 40.79 3.55
419 430 4.201851 GCTGTACAGGCATGTGAATTAGTG 60.202 45.833 23.95 0.00 40.79 2.74
423 434 3.012518 GAGCTGTACAGGCATGTGAATT 58.987 45.455 23.95 0.00 40.79 2.17
426 437 0.975887 TGAGCTGTACAGGCATGTGA 59.024 50.000 23.95 0.00 40.79 3.58
452 463 3.776969 ACTGATCTCCCTGTGCTTATCAA 59.223 43.478 0.00 0.00 0.00 2.57
465 476 2.043227 CCCCCTAGACAACTGATCTCC 58.957 57.143 0.00 0.00 0.00 3.71
485 526 2.416162 GGTGAGTTGAGATCGTCAGGTC 60.416 54.545 0.00 0.00 36.21 3.85
490 531 3.577649 TTCTGGTGAGTTGAGATCGTC 57.422 47.619 0.00 0.00 0.00 4.20
520 561 4.267536 CCCTGGGCATACATATCTCATTG 58.732 47.826 0.00 0.00 0.00 2.82
521 562 4.581309 CCCTGGGCATACATATCTCATT 57.419 45.455 0.00 0.00 0.00 2.57
556 609 3.233507 ACTTGTTTGGCATCCACTTGAT 58.766 40.909 0.00 0.00 30.78 2.57
625 687 7.083062 TCTGGTGATATTGAGATATTTGCCT 57.917 36.000 0.00 0.00 0.00 4.75
626 688 7.750229 TTCTGGTGATATTGAGATATTTGCC 57.250 36.000 0.00 0.00 0.00 4.52
636 698 6.385176 AGTCCTTCTGATTCTGGTGATATTGA 59.615 38.462 0.00 0.00 0.00 2.57
638 700 6.821616 AGTCCTTCTGATTCTGGTGATATT 57.178 37.500 0.00 0.00 0.00 1.28
639 701 7.921041 TTAGTCCTTCTGATTCTGGTGATAT 57.079 36.000 0.00 0.00 0.00 1.63
640 702 7.565029 TCATTAGTCCTTCTGATTCTGGTGATA 59.435 37.037 0.00 0.00 0.00 2.15
641 703 6.385176 TCATTAGTCCTTCTGATTCTGGTGAT 59.615 38.462 0.00 0.00 0.00 3.06
647 709 4.718774 TGCCTCATTAGTCCTTCTGATTCT 59.281 41.667 0.00 0.00 0.00 2.40
657 719 2.486191 CCATCTGGTGCCTCATTAGTCC 60.486 54.545 0.00 0.00 0.00 3.85
705 767 5.390885 GCACGAACTTTGATGCAAGATCTTA 60.391 40.000 7.86 0.00 38.00 2.10
727 789 0.594602 GCACAGCTTGACATCTTGCA 59.405 50.000 0.00 0.00 0.00 4.08
884 951 4.222333 TCTGGTGGGCTTTATATAGGGA 57.778 45.455 0.00 0.00 0.00 4.20
900 967 4.387598 GCTTTGATCTCATAGCATCTGGT 58.612 43.478 15.05 0.00 45.89 4.00
972 1052 3.349022 TGAAGAACGGTCAAGGTGTTTT 58.651 40.909 1.87 0.00 0.00 2.43
1126 1206 0.244994 CCGATCACTGATCCGATCCC 59.755 60.000 12.58 0.00 35.83 3.85
1127 1207 0.389166 GCCGATCACTGATCCGATCC 60.389 60.000 12.58 0.00 35.83 3.36
1128 1208 0.730834 CGCCGATCACTGATCCGATC 60.731 60.000 12.58 1.01 35.83 3.69
1129 1209 1.287191 CGCCGATCACTGATCCGAT 59.713 57.895 12.58 0.00 35.83 4.18
1130 1210 0.816421 TACGCCGATCACTGATCCGA 60.816 55.000 18.82 5.69 35.83 4.55
1131 1211 0.241213 ATACGCCGATCACTGATCCG 59.759 55.000 12.58 12.92 35.83 4.18
1233 1318 4.781934 AGGATTCCCTCAAAAATCTACCG 58.218 43.478 0.00 0.00 38.86 4.02
1311 1397 7.610692 CAGATATTGCATTCCTGATCTACCAAT 59.389 37.037 0.00 0.00 0.00 3.16
1324 1410 8.677300 TGTAGGAAAAGTTCAGATATTGCATTC 58.323 33.333 0.00 0.00 0.00 2.67
1343 1440 2.635915 ACCAACCGATCAAGTGTAGGAA 59.364 45.455 0.00 0.00 0.00 3.36
1344 1441 2.028476 CACCAACCGATCAAGTGTAGGA 60.028 50.000 0.00 0.00 0.00 2.94
1345 1442 2.289444 ACACCAACCGATCAAGTGTAGG 60.289 50.000 0.00 0.00 39.77 3.18
1346 1443 3.040147 ACACCAACCGATCAAGTGTAG 57.960 47.619 0.00 0.00 39.77 2.74
1347 1444 3.478857 AACACCAACCGATCAAGTGTA 57.521 42.857 0.00 0.00 40.63 2.90
1348 1445 2.341846 AACACCAACCGATCAAGTGT 57.658 45.000 0.00 0.00 43.21 3.55
1349 1446 4.215399 ACAATAACACCAACCGATCAAGTG 59.785 41.667 0.00 0.00 34.61 3.16
1350 1447 4.215399 CACAATAACACCAACCGATCAAGT 59.785 41.667 0.00 0.00 0.00 3.16
1351 1448 4.722194 CACAATAACACCAACCGATCAAG 58.278 43.478 0.00 0.00 0.00 3.02
1352 1449 3.057876 GCACAATAACACCAACCGATCAA 60.058 43.478 0.00 0.00 0.00 2.57
1353 1450 2.486203 GCACAATAACACCAACCGATCA 59.514 45.455 0.00 0.00 0.00 2.92
1363 1460 3.315191 ACACTTCCACAGCACAATAACAC 59.685 43.478 0.00 0.00 0.00 3.32
1415 1512 1.081892 TGCGAATTCTCTTGAGCAGC 58.918 50.000 3.52 0.00 0.00 5.25
1466 1563 3.557903 ATGGCAGCTCAAGTGCGGT 62.558 57.895 0.00 0.00 42.19 5.68
1511 1608 0.106708 GGCGCAGAACTATCATGGGA 59.893 55.000 10.83 0.00 0.00 4.37
1727 1830 3.242316 GCCGAACTCAAATCATAACGTCC 60.242 47.826 0.00 0.00 0.00 4.79
1766 1869 3.073062 ACATTTTGGCACCTCTAGACACT 59.927 43.478 0.00 0.00 0.00 3.55
1767 1870 3.412386 ACATTTTGGCACCTCTAGACAC 58.588 45.455 0.00 0.00 0.00 3.67
1768 1871 3.788227 ACATTTTGGCACCTCTAGACA 57.212 42.857 0.00 0.00 0.00 3.41
1769 1872 4.327680 AGAACATTTTGGCACCTCTAGAC 58.672 43.478 0.00 0.00 0.00 2.59
1770 1873 4.287067 AGAGAACATTTTGGCACCTCTAGA 59.713 41.667 0.00 0.00 0.00 2.43
1771 1874 4.583871 AGAGAACATTTTGGCACCTCTAG 58.416 43.478 0.00 0.00 0.00 2.43
1772 1875 4.640771 AGAGAACATTTTGGCACCTCTA 57.359 40.909 0.00 0.00 0.00 2.43
1773 1876 3.515602 AGAGAACATTTTGGCACCTCT 57.484 42.857 0.00 0.00 0.00 3.69
1774 1877 4.154918 CACTAGAGAACATTTTGGCACCTC 59.845 45.833 0.00 0.00 0.00 3.85
1778 1881 4.098914 ACCACTAGAGAACATTTTGGCA 57.901 40.909 0.00 0.00 0.00 4.92
1790 1893 2.103373 TGGCTAGCAGAACCACTAGAG 58.897 52.381 18.24 0.00 38.53 2.43
1793 1896 1.278127 GGTTGGCTAGCAGAACCACTA 59.722 52.381 29.73 4.45 39.23 2.74
1796 1899 0.250727 GTGGTTGGCTAGCAGAACCA 60.251 55.000 31.93 31.93 45.45 3.67
1843 1946 0.474184 ATTGCCCAGAATACGGAGGG 59.526 55.000 0.00 0.00 44.37 4.30
1928 2031 7.932120 TGTAAAGAAATATAAGAGAGCGCTC 57.068 36.000 30.01 30.01 41.62 5.03
1929 2032 8.144478 TCATGTAAAGAAATATAAGAGAGCGCT 58.856 33.333 11.27 11.27 0.00 5.92
1930 2033 8.217778 GTCATGTAAAGAAATATAAGAGAGCGC 58.782 37.037 0.00 0.00 0.00 5.92
1931 2034 8.420945 CGTCATGTAAAGAAATATAAGAGAGCG 58.579 37.037 0.00 0.00 0.00 5.03
1932 2035 8.217778 GCGTCATGTAAAGAAATATAAGAGAGC 58.782 37.037 0.00 0.00 0.00 4.09
1933 2036 8.420945 CGCGTCATGTAAAGAAATATAAGAGAG 58.579 37.037 0.00 0.00 0.00 3.20
1934 2037 8.132995 TCGCGTCATGTAAAGAAATATAAGAGA 58.867 33.333 5.77 0.00 0.00 3.10
1935 2038 8.208560 GTCGCGTCATGTAAAGAAATATAAGAG 58.791 37.037 5.77 0.00 0.00 2.85
1936 2039 7.919091 AGTCGCGTCATGTAAAGAAATATAAGA 59.081 33.333 5.77 0.00 0.00 2.10
1937 2040 8.062231 AGTCGCGTCATGTAAAGAAATATAAG 57.938 34.615 5.77 0.00 0.00 1.73
1938 2041 7.997107 AGTCGCGTCATGTAAAGAAATATAA 57.003 32.000 5.77 0.00 0.00 0.98
1939 2042 8.961092 GTTAGTCGCGTCATGTAAAGAAATATA 58.039 33.333 5.77 0.00 0.00 0.86
1940 2043 7.705325 AGTTAGTCGCGTCATGTAAAGAAATAT 59.295 33.333 5.77 0.00 0.00 1.28
1941 2044 7.031372 AGTTAGTCGCGTCATGTAAAGAAATA 58.969 34.615 5.77 0.00 0.00 1.40
1942 2045 5.867716 AGTTAGTCGCGTCATGTAAAGAAAT 59.132 36.000 5.77 0.00 0.00 2.17
1943 2046 5.224888 AGTTAGTCGCGTCATGTAAAGAAA 58.775 37.500 5.77 0.00 0.00 2.52
1944 2047 4.801891 AGTTAGTCGCGTCATGTAAAGAA 58.198 39.130 5.77 0.00 0.00 2.52
1945 2048 4.430137 AGTTAGTCGCGTCATGTAAAGA 57.570 40.909 5.77 0.00 0.00 2.52
1946 2049 4.031426 GGAAGTTAGTCGCGTCATGTAAAG 59.969 45.833 5.77 0.00 0.00 1.85
1947 2050 3.922240 GGAAGTTAGTCGCGTCATGTAAA 59.078 43.478 5.77 0.00 0.00 2.01
1948 2051 3.057386 TGGAAGTTAGTCGCGTCATGTAA 60.057 43.478 5.77 0.00 0.00 2.41
1949 2052 2.488937 TGGAAGTTAGTCGCGTCATGTA 59.511 45.455 5.77 0.00 0.00 2.29
1950 2053 1.271379 TGGAAGTTAGTCGCGTCATGT 59.729 47.619 5.77 0.00 0.00 3.21
1951 2054 1.920574 CTGGAAGTTAGTCGCGTCATG 59.079 52.381 5.77 0.00 0.00 3.07
1952 2055 1.816835 TCTGGAAGTTAGTCGCGTCAT 59.183 47.619 5.77 0.00 33.76 3.06
1953 2056 1.241165 TCTGGAAGTTAGTCGCGTCA 58.759 50.000 5.77 0.00 33.76 4.35
1954 2057 2.186076 CATCTGGAAGTTAGTCGCGTC 58.814 52.381 5.77 0.00 33.76 5.19
1955 2058 1.544691 ACATCTGGAAGTTAGTCGCGT 59.455 47.619 5.77 0.00 33.76 6.01
1956 2059 2.279582 ACATCTGGAAGTTAGTCGCG 57.720 50.000 0.00 0.00 33.76 5.87
1957 2060 4.106197 CAGTACATCTGGAAGTTAGTCGC 58.894 47.826 0.00 0.00 40.23 5.19
1958 2061 5.562506 TCAGTACATCTGGAAGTTAGTCG 57.437 43.478 0.00 0.00 43.76 4.18
1959 2062 8.779354 AAAATCAGTACATCTGGAAGTTAGTC 57.221 34.615 0.00 0.00 43.76 2.59
1963 2066 9.793259 TTCTTAAAATCAGTACATCTGGAAGTT 57.207 29.630 0.00 0.00 43.76 2.66
1964 2067 9.220767 GTTCTTAAAATCAGTACATCTGGAAGT 57.779 33.333 0.00 0.00 43.76 3.01
1965 2068 9.219603 TGTTCTTAAAATCAGTACATCTGGAAG 57.780 33.333 0.00 0.00 43.76 3.46
1966 2069 9.219603 CTGTTCTTAAAATCAGTACATCTGGAA 57.780 33.333 0.00 0.00 43.76 3.53
1967 2070 8.593679 TCTGTTCTTAAAATCAGTACATCTGGA 58.406 33.333 0.00 0.00 43.76 3.86
1968 2071 8.777865 TCTGTTCTTAAAATCAGTACATCTGG 57.222 34.615 0.00 0.00 43.76 3.86
1978 2081 9.383519 GGTCATCTGTATCTGTTCTTAAAATCA 57.616 33.333 0.00 0.00 0.00 2.57
1979 2082 8.831550 GGGTCATCTGTATCTGTTCTTAAAATC 58.168 37.037 0.00 0.00 0.00 2.17
1980 2083 8.328758 TGGGTCATCTGTATCTGTTCTTAAAAT 58.671 33.333 0.00 0.00 0.00 1.82
1981 2084 7.685481 TGGGTCATCTGTATCTGTTCTTAAAA 58.315 34.615 0.00 0.00 0.00 1.52
1982 2085 7.252612 TGGGTCATCTGTATCTGTTCTTAAA 57.747 36.000 0.00 0.00 0.00 1.52
1983 2086 6.867519 TGGGTCATCTGTATCTGTTCTTAA 57.132 37.500 0.00 0.00 0.00 1.85
1984 2087 7.785028 AGTATGGGTCATCTGTATCTGTTCTTA 59.215 37.037 0.00 0.00 0.00 2.10
1985 2088 5.965033 ATGGGTCATCTGTATCTGTTCTT 57.035 39.130 0.00 0.00 0.00 2.52
1986 2089 6.139671 AGTATGGGTCATCTGTATCTGTTCT 58.860 40.000 0.00 0.00 0.00 3.01
1987 2090 6.412362 AGTATGGGTCATCTGTATCTGTTC 57.588 41.667 0.00 0.00 0.00 3.18
1988 2091 6.015010 GCTAGTATGGGTCATCTGTATCTGTT 60.015 42.308 0.00 0.00 0.00 3.16
1989 2092 5.478679 GCTAGTATGGGTCATCTGTATCTGT 59.521 44.000 0.00 0.00 0.00 3.41
1990 2093 5.714333 AGCTAGTATGGGTCATCTGTATCTG 59.286 44.000 0.00 0.00 0.00 2.90
1991 2094 5.898120 AGCTAGTATGGGTCATCTGTATCT 58.102 41.667 0.00 0.00 0.00 1.98
1992 2095 6.597832 AAGCTAGTATGGGTCATCTGTATC 57.402 41.667 0.00 0.00 0.00 2.24
1993 2096 6.554982 TCAAAGCTAGTATGGGTCATCTGTAT 59.445 38.462 0.00 0.00 0.00 2.29
1994 2097 5.897250 TCAAAGCTAGTATGGGTCATCTGTA 59.103 40.000 0.00 0.00 0.00 2.74
1995 2098 4.716784 TCAAAGCTAGTATGGGTCATCTGT 59.283 41.667 0.00 0.00 0.00 3.41
1996 2099 5.282055 TCAAAGCTAGTATGGGTCATCTG 57.718 43.478 0.00 0.00 0.00 2.90
1997 2100 5.843421 AGATCAAAGCTAGTATGGGTCATCT 59.157 40.000 0.00 0.00 0.00 2.90
1998 2101 5.931146 CAGATCAAAGCTAGTATGGGTCATC 59.069 44.000 0.00 0.00 0.00 2.92
1999 2102 5.744300 GCAGATCAAAGCTAGTATGGGTCAT 60.744 44.000 0.00 0.00 0.00 3.06
2000 2103 4.443457 GCAGATCAAAGCTAGTATGGGTCA 60.443 45.833 0.00 0.00 0.00 4.02
2001 2104 4.061596 GCAGATCAAAGCTAGTATGGGTC 58.938 47.826 0.00 0.00 0.00 4.46
2002 2105 3.713764 AGCAGATCAAAGCTAGTATGGGT 59.286 43.478 5.65 0.00 39.78 4.51
2003 2106 4.063689 CAGCAGATCAAAGCTAGTATGGG 58.936 47.826 6.96 0.00 39.50 4.00
2004 2107 3.497640 GCAGCAGATCAAAGCTAGTATGG 59.502 47.826 6.96 0.00 39.50 2.74
2005 2108 4.124970 TGCAGCAGATCAAAGCTAGTATG 58.875 43.478 6.96 0.00 39.50 2.39
2006 2109 4.412796 TGCAGCAGATCAAAGCTAGTAT 57.587 40.909 6.96 0.00 39.50 2.12
2007 2110 3.893326 TGCAGCAGATCAAAGCTAGTA 57.107 42.857 6.96 0.92 39.50 1.82
2008 2111 2.775911 TGCAGCAGATCAAAGCTAGT 57.224 45.000 6.96 0.00 39.50 2.57
2009 2112 2.287069 GCATGCAGCAGATCAAAGCTAG 60.287 50.000 14.21 4.30 44.79 3.42
2010 2113 1.674441 GCATGCAGCAGATCAAAGCTA 59.326 47.619 14.21 0.00 44.79 3.32
2011 2114 0.456221 GCATGCAGCAGATCAAAGCT 59.544 50.000 14.21 0.00 44.79 3.74
2012 2115 2.959275 GCATGCAGCAGATCAAAGC 58.041 52.632 14.21 0.00 44.79 3.51
2022 2125 0.392729 ACTCTCCTCTTGCATGCAGC 60.393 55.000 21.50 0.00 45.96 5.25
2023 2126 1.066358 TCACTCTCCTCTTGCATGCAG 60.066 52.381 21.50 14.85 0.00 4.41
2024 2127 0.978907 TCACTCTCCTCTTGCATGCA 59.021 50.000 18.46 18.46 0.00 3.96
2025 2128 1.654317 CTCACTCTCCTCTTGCATGC 58.346 55.000 11.82 11.82 0.00 4.06
2026 2129 1.743091 GCCTCACTCTCCTCTTGCATG 60.743 57.143 0.00 0.00 0.00 4.06
2027 2130 0.540923 GCCTCACTCTCCTCTTGCAT 59.459 55.000 0.00 0.00 0.00 3.96
2028 2131 0.543883 AGCCTCACTCTCCTCTTGCA 60.544 55.000 0.00 0.00 0.00 4.08
2029 2132 0.175531 GAGCCTCACTCTCCTCTTGC 59.824 60.000 0.00 0.00 42.62 4.01
2030 2133 1.477700 CTGAGCCTCACTCTCCTCTTG 59.522 57.143 0.00 0.00 46.41 3.02
2031 2134 1.619432 CCTGAGCCTCACTCTCCTCTT 60.619 57.143 0.00 0.00 46.41 2.85
2032 2135 0.033208 CCTGAGCCTCACTCTCCTCT 60.033 60.000 0.00 0.00 46.41 3.69
2033 2136 1.675720 GCCTGAGCCTCACTCTCCTC 61.676 65.000 0.00 0.00 46.41 3.71
2034 2137 1.685421 GCCTGAGCCTCACTCTCCT 60.685 63.158 0.00 0.00 46.41 3.69
2035 2138 1.336632 ATGCCTGAGCCTCACTCTCC 61.337 60.000 0.00 0.00 46.41 3.71
2036 2139 0.179078 CATGCCTGAGCCTCACTCTC 60.179 60.000 0.00 0.00 46.41 3.20
2037 2140 1.906253 CATGCCTGAGCCTCACTCT 59.094 57.895 0.00 0.00 46.41 3.24
2038 2141 1.818785 GCATGCCTGAGCCTCACTC 60.819 63.158 6.36 0.00 46.45 3.51
2039 2142 1.923006 ATGCATGCCTGAGCCTCACT 61.923 55.000 16.68 0.00 38.69 3.41
2040 2143 1.453379 ATGCATGCCTGAGCCTCAC 60.453 57.895 16.68 0.00 38.69 3.51
2041 2144 1.453197 CATGCATGCCTGAGCCTCA 60.453 57.895 17.08 0.00 38.69 3.86
2042 2145 3.433319 CATGCATGCCTGAGCCTC 58.567 61.111 17.08 0.00 38.69 4.70
2051 2154 3.817655 TGCTGACCGCATGCATGC 61.818 61.111 36.49 36.49 45.47 4.06
2061 2164 4.819761 TCGCGCCTCATGCTGACC 62.820 66.667 0.00 0.00 38.05 4.02
2062 2165 3.260483 CTCGCGCCTCATGCTGAC 61.260 66.667 0.00 0.00 38.05 3.51
2063 2166 3.763356 ACTCGCGCCTCATGCTGA 61.763 61.111 0.00 0.00 38.05 4.26
2064 2167 3.561213 CACTCGCGCCTCATGCTG 61.561 66.667 0.00 0.00 38.05 4.41
2065 2168 3.713205 CTCACTCGCGCCTCATGCT 62.713 63.158 0.00 0.00 38.05 3.79
2066 2169 3.260483 CTCACTCGCGCCTCATGC 61.260 66.667 0.00 0.00 0.00 4.06
2067 2170 3.260483 GCTCACTCGCGCCTCATG 61.260 66.667 0.00 0.00 0.00 3.07
2068 2171 3.763356 TGCTCACTCGCGCCTCAT 61.763 61.111 0.00 0.00 0.00 2.90
2069 2172 4.724602 GTGCTCACTCGCGCCTCA 62.725 66.667 0.00 0.00 34.46 3.86
2073 2176 3.997064 ATGAGGTGCTCACTCGCGC 62.997 63.158 0.00 0.00 43.63 6.86
2074 2177 1.016130 AAATGAGGTGCTCACTCGCG 61.016 55.000 0.00 0.00 43.63 5.87
2075 2178 1.160137 AAAATGAGGTGCTCACTCGC 58.840 50.000 0.00 0.00 43.63 5.03
2092 2195 8.037166 TGTTGGTATATGCATGCATGTTAAAAA 58.963 29.630 37.43 22.56 37.82 1.94
2093 2196 7.550712 TGTTGGTATATGCATGCATGTTAAAA 58.449 30.769 37.43 23.91 37.82 1.52
2094 2197 7.105241 TGTTGGTATATGCATGCATGTTAAA 57.895 32.000 37.43 23.23 37.82 1.52
2095 2198 6.705863 TGTTGGTATATGCATGCATGTTAA 57.294 33.333 37.43 23.85 37.82 2.01
2096 2199 6.705863 TTGTTGGTATATGCATGCATGTTA 57.294 33.333 37.43 26.18 37.82 2.41
2097 2200 5.595257 TTGTTGGTATATGCATGCATGTT 57.405 34.783 37.43 27.11 37.82 2.71
2098 2201 5.595257 TTTGTTGGTATATGCATGCATGT 57.405 34.783 37.43 33.30 37.82 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.