Multiple sequence alignment - TraesCS3A01G257800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G257800 chr3A 100.000 2872 0 0 1 2872 479483000 479480129 0.000000e+00 5304.0
1 TraesCS3A01G257800 chr3A 91.803 61 4 1 1174 1234 60297622 60297681 1.830000e-12 84.2
2 TraesCS3A01G257800 chr3D 89.925 2263 104 46 652 2869 360049412 360047229 0.000000e+00 2802.0
3 TraesCS3A01G257800 chr3D 88.073 109 8 3 12 115 360050114 360050006 1.080000e-24 124.0
4 TraesCS3A01G257800 chr3B 92.863 1303 55 12 652 1917 466107246 466105945 0.000000e+00 1857.0
5 TraesCS3A01G257800 chr3B 89.855 345 12 5 2017 2357 466105886 466105561 3.420000e-114 422.0
6 TraesCS3A01G257800 chr3B 95.736 258 7 3 3 256 466190868 466190611 2.060000e-111 412.0
7 TraesCS3A01G257800 chr3B 87.973 291 22 4 2527 2809 466105377 466105092 5.930000e-87 331.0
8 TraesCS3A01G257800 chr3B 88.208 212 22 3 680 891 466189948 466189740 1.710000e-62 250.0
9 TraesCS3A01G257800 chr5D 88.333 120 12 2 1376 1494 200501539 200501657 2.980000e-30 143.0
10 TraesCS3A01G257800 chr5B 88.333 120 12 2 1376 1494 211146510 211146628 2.980000e-30 143.0
11 TraesCS3A01G257800 chr5B 83.607 122 18 2 1374 1494 514279244 514279124 2.340000e-21 113.0
12 TraesCS3A01G257800 chr5A 88.333 120 12 2 1376 1494 214166890 214167008 2.980000e-30 143.0
13 TraesCS3A01G257800 chr4B 85.593 118 15 2 1370 1486 100576902 100577018 3.890000e-24 122.0
14 TraesCS3A01G257800 chr4A 85.593 118 15 2 1370 1486 517884840 517884956 3.890000e-24 122.0
15 TraesCS3A01G257800 chr2D 84.000 125 12 5 1183 1303 165468247 165468127 2.340000e-21 113.0
16 TraesCS3A01G257800 chr2D 90.909 77 4 2 1187 1260 471055932 471055856 1.820000e-17 100.0
17 TraesCS3A01G257800 chr1A 81.818 132 22 2 1378 1508 463461337 463461207 3.030000e-20 110.0
18 TraesCS3A01G257800 chr2A 83.200 125 13 5 1183 1303 185285017 185285137 1.090000e-19 108.0
19 TraesCS3A01G257800 chr2A 92.208 77 3 2 1187 1260 612835012 612834936 3.910000e-19 106.0
20 TraesCS3A01G257800 chr2A 73.488 215 43 11 367 577 157449687 157449891 5.130000e-08 69.4
21 TraesCS3A01G257800 chr2B 90.909 77 4 2 1187 1260 550214163 550214087 1.820000e-17 100.0
22 TraesCS3A01G257800 chr7D 88.679 53 4 2 1065 1117 220989873 220989923 2.390000e-06 63.9
23 TraesCS3A01G257800 chr7B 100.000 34 0 0 1084 1117 175992970 175992937 2.390000e-06 63.9
24 TraesCS3A01G257800 chr7A 88.679 53 4 2 1065 1117 235473529 235473579 2.390000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G257800 chr3A 479480129 479483000 2871 True 5304 5304 100.000000 1 2872 1 chr3A.!!$R1 2871
1 TraesCS3A01G257800 chr3D 360047229 360050114 2885 True 1463 2802 88.999000 12 2869 2 chr3D.!!$R1 2857
2 TraesCS3A01G257800 chr3B 466105092 466107246 2154 True 870 1857 90.230333 652 2809 3 chr3B.!!$R1 2157
3 TraesCS3A01G257800 chr3B 466189740 466190868 1128 True 331 412 91.972000 3 891 2 chr3B.!!$R2 888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 1383 0.521735 GGCGAGAAAAGCGACCAAAT 59.478 50.0 0.0 0.0 35.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2800 3406 0.03438 TATATAGCGCCGGAGCTCCT 60.034 55.0 36.67 25.48 45.67 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 178 7.495606 GCAAGAGGAAAAAGAAATTGGAAAAGA 59.504 33.333 0.00 0.00 0.00 2.52
280 289 9.661563 AACATAAAACATACTCTATTCGTTCCA 57.338 29.630 0.00 0.00 0.00 3.53
281 290 9.661563 ACATAAAACATACTCTATTCGTTCCAA 57.338 29.630 0.00 0.00 0.00 3.53
284 293 8.617290 AAAACATACTCTATTCGTTCCAAAGT 57.383 30.769 0.00 0.00 0.00 2.66
285 294 9.715121 AAAACATACTCTATTCGTTCCAAAGTA 57.285 29.630 0.00 0.00 0.00 2.24
286 295 9.715121 AAACATACTCTATTCGTTCCAAAGTAA 57.285 29.630 0.00 0.00 0.00 2.24
287 296 8.928270 ACATACTCTATTCGTTCCAAAGTAAG 57.072 34.615 0.00 0.00 0.00 2.34
288 297 7.491696 ACATACTCTATTCGTTCCAAAGTAAGC 59.508 37.037 0.00 0.00 0.00 3.09
289 298 4.863131 ACTCTATTCGTTCCAAAGTAAGCG 59.137 41.667 0.00 0.00 0.00 4.68
290 299 4.813027 TCTATTCGTTCCAAAGTAAGCGT 58.187 39.130 0.00 0.00 0.00 5.07
291 300 4.860907 TCTATTCGTTCCAAAGTAAGCGTC 59.139 41.667 0.00 0.00 0.00 5.19
292 301 2.806608 TCGTTCCAAAGTAAGCGTCT 57.193 45.000 0.00 0.00 0.00 4.18
293 302 2.669364 TCGTTCCAAAGTAAGCGTCTC 58.331 47.619 0.00 0.00 0.00 3.36
294 303 2.034939 TCGTTCCAAAGTAAGCGTCTCA 59.965 45.455 0.00 0.00 0.00 3.27
295 304 2.798283 CGTTCCAAAGTAAGCGTCTCAA 59.202 45.455 0.00 0.00 0.00 3.02
296 305 3.362693 CGTTCCAAAGTAAGCGTCTCAAC 60.363 47.826 0.00 0.00 0.00 3.18
297 306 3.746045 TCCAAAGTAAGCGTCTCAACT 57.254 42.857 0.00 0.00 0.00 3.16
298 307 4.067972 TCCAAAGTAAGCGTCTCAACTT 57.932 40.909 0.00 0.00 33.72 2.66
299 308 4.448210 TCCAAAGTAAGCGTCTCAACTTT 58.552 39.130 11.17 11.17 41.56 2.66
301 310 5.156804 CAAAGTAAGCGTCTCAACTTTGT 57.843 39.130 22.40 6.56 46.99 2.83
302 311 6.281848 CAAAGTAAGCGTCTCAACTTTGTA 57.718 37.500 22.40 0.00 46.99 2.41
303 312 5.902051 AAGTAAGCGTCTCAACTTTGTAC 57.098 39.130 0.00 0.00 0.00 2.90
304 313 5.197682 AGTAAGCGTCTCAACTTTGTACT 57.802 39.130 0.00 0.00 0.00 2.73
305 314 5.598769 AGTAAGCGTCTCAACTTTGTACTT 58.401 37.500 0.00 0.00 0.00 2.24
306 315 6.742109 AGTAAGCGTCTCAACTTTGTACTTA 58.258 36.000 0.00 0.00 0.00 2.24
307 316 7.376615 AGTAAGCGTCTCAACTTTGTACTTAT 58.623 34.615 0.00 0.00 0.00 1.73
308 317 7.871463 AGTAAGCGTCTCAACTTTGTACTTATT 59.129 33.333 0.00 0.00 0.00 1.40
309 318 7.492352 AAGCGTCTCAACTTTGTACTTATTT 57.508 32.000 0.00 0.00 0.00 1.40
310 319 7.492352 AGCGTCTCAACTTTGTACTTATTTT 57.508 32.000 0.00 0.00 0.00 1.82
311 320 7.352739 AGCGTCTCAACTTTGTACTTATTTTG 58.647 34.615 0.00 0.00 0.00 2.44
312 321 6.577427 GCGTCTCAACTTTGTACTTATTTTGG 59.423 38.462 0.00 0.00 0.00 3.28
313 322 7.075741 CGTCTCAACTTTGTACTTATTTTGGG 58.924 38.462 0.00 0.00 0.00 4.12
314 323 7.041644 CGTCTCAACTTTGTACTTATTTTGGGA 60.042 37.037 0.00 0.00 0.00 4.37
315 324 8.290325 GTCTCAACTTTGTACTTATTTTGGGAG 58.710 37.037 0.00 0.00 0.00 4.30
316 325 8.215050 TCTCAACTTTGTACTTATTTTGGGAGA 58.785 33.333 0.00 0.00 0.00 3.71
317 326 8.391075 TCAACTTTGTACTTATTTTGGGAGAG 57.609 34.615 0.00 0.00 0.00 3.20
318 327 8.215050 TCAACTTTGTACTTATTTTGGGAGAGA 58.785 33.333 0.00 0.00 0.00 3.10
319 328 8.507249 CAACTTTGTACTTATTTTGGGAGAGAG 58.493 37.037 0.00 0.00 0.00 3.20
320 329 7.168905 ACTTTGTACTTATTTTGGGAGAGAGG 58.831 38.462 0.00 0.00 0.00 3.69
321 330 5.693769 TGTACTTATTTTGGGAGAGAGGG 57.306 43.478 0.00 0.00 0.00 4.30
322 331 5.347124 TGTACTTATTTTGGGAGAGAGGGA 58.653 41.667 0.00 0.00 0.00 4.20
323 332 5.425539 TGTACTTATTTTGGGAGAGAGGGAG 59.574 44.000 0.00 0.00 0.00 4.30
330 339 3.905493 TGGGAGAGAGGGAGTAATAGG 57.095 52.381 0.00 0.00 0.00 2.57
395 407 6.519679 ACAATCACAATTGCTCACATACAT 57.480 33.333 5.05 0.00 45.16 2.29
410 422 4.392754 CACATACATGCACATACACACACT 59.607 41.667 0.00 0.00 0.00 3.55
411 423 5.580297 CACATACATGCACATACACACACTA 59.420 40.000 0.00 0.00 0.00 2.74
412 424 6.258507 CACATACATGCACATACACACACTAT 59.741 38.462 0.00 0.00 0.00 2.12
413 425 7.437862 CACATACATGCACATACACACACTATA 59.562 37.037 0.00 0.00 0.00 1.31
414 426 8.150296 ACATACATGCACATACACACACTATAT 58.850 33.333 0.00 0.00 0.00 0.86
415 427 6.849588 ACATGCACATACACACACTATATG 57.150 37.500 0.00 0.00 33.38 1.78
416 428 6.581712 ACATGCACATACACACACTATATGA 58.418 36.000 0.00 0.00 31.90 2.15
417 429 7.047271 ACATGCACATACACACACTATATGAA 58.953 34.615 0.00 0.00 31.90 2.57
418 430 6.902224 TGCACATACACACACTATATGAAC 57.098 37.500 0.00 0.00 31.90 3.18
419 431 6.639563 TGCACATACACACACTATATGAACT 58.360 36.000 0.00 0.00 31.90 3.01
420 432 6.756542 TGCACATACACACACTATATGAACTC 59.243 38.462 0.00 0.00 31.90 3.01
421 433 6.756542 GCACATACACACACTATATGAACTCA 59.243 38.462 0.00 0.00 31.90 3.41
422 434 7.254117 GCACATACACACACTATATGAACTCAC 60.254 40.741 0.00 0.00 31.90 3.51
423 435 7.759433 CACATACACACACTATATGAACTCACA 59.241 37.037 0.00 0.00 31.90 3.58
424 436 7.759886 ACATACACACACTATATGAACTCACAC 59.240 37.037 0.00 0.00 31.90 3.82
425 437 6.096673 ACACACACTATATGAACTCACACA 57.903 37.500 0.00 0.00 0.00 3.72
426 438 5.926542 ACACACACTATATGAACTCACACAC 59.073 40.000 0.00 0.00 0.00 3.82
427 439 5.060940 CACACACTATATGAACTCACACACG 59.939 44.000 0.00 0.00 0.00 4.49
428 440 4.031765 CACACTATATGAACTCACACACGC 59.968 45.833 0.00 0.00 0.00 5.34
429 441 4.173256 CACTATATGAACTCACACACGCA 58.827 43.478 0.00 0.00 0.00 5.24
430 442 4.805719 CACTATATGAACTCACACACGCAT 59.194 41.667 0.00 0.00 0.00 4.73
431 443 5.977129 CACTATATGAACTCACACACGCATA 59.023 40.000 0.00 0.00 0.00 3.14
432 444 6.642540 CACTATATGAACTCACACACGCATAT 59.357 38.462 0.00 0.00 34.44 1.78
447 481 2.828520 CGCATATCCTATCCCTGTGAGT 59.171 50.000 0.00 0.00 0.00 3.41
450 484 4.772624 GCATATCCTATCCCTGTGAGTACA 59.227 45.833 0.00 0.00 35.08 2.90
471 505 1.745653 TCCGACATACTGAGCTGACAG 59.254 52.381 0.00 0.00 42.78 3.51
486 520 7.840931 TGAGCTGACAGAACATCTTAAGATTA 58.159 34.615 15.49 0.00 31.21 1.75
564 598 4.993029 ACATCACCGGAAAGTTTGAAAA 57.007 36.364 9.46 0.00 0.00 2.29
609 692 8.252964 GTTCTATCACAAAGAACCGTTATTCT 57.747 34.615 4.94 0.00 44.60 2.40
611 694 5.779806 ATCACAAAGAACCGTTATTCTCG 57.220 39.130 0.00 0.00 37.99 4.04
715 1212 2.464459 CGTCTCCGCATCCTTTGGC 61.464 63.158 0.00 0.00 0.00 4.52
724 1221 2.680370 ATCCTTTGGCTCGTCCCCC 61.680 63.158 0.00 0.00 0.00 5.40
725 1222 4.778143 CCTTTGGCTCGTCCCCCG 62.778 72.222 0.00 0.00 38.13 5.73
726 1223 3.702048 CTTTGGCTCGTCCCCCGA 61.702 66.667 0.00 0.00 45.00 5.14
727 1224 3.006728 TTTGGCTCGTCCCCCGAT 61.007 61.111 0.00 0.00 46.23 4.18
728 1225 2.536997 CTTTGGCTCGTCCCCCGATT 62.537 60.000 0.00 0.00 46.23 3.34
886 1383 0.521735 GGCGAGAAAAGCGACCAAAT 59.478 50.000 0.00 0.00 35.00 2.32
890 1387 1.472878 GAGAAAAGCGACCAAATCCCC 59.527 52.381 0.00 0.00 0.00 4.81
909 1406 2.224621 CCCCTCAGTCTCAGAAAAAGCA 60.225 50.000 0.00 0.00 0.00 3.91
966 1463 1.892474 CCGAGGAGCCAAAATCCAAAA 59.108 47.619 0.00 0.00 39.47 2.44
967 1464 2.094545 CCGAGGAGCCAAAATCCAAAAG 60.095 50.000 0.00 0.00 39.47 2.27
1341 1856 4.113354 CCTACTTCCTGAAATGCGTCTAC 58.887 47.826 0.00 0.00 0.00 2.59
1365 1880 5.804473 CGCAGATGATAGACTTATGGATGTC 59.196 44.000 0.00 0.00 0.00 3.06
1579 2094 4.379243 CAGACCGCCGCAACCTCT 62.379 66.667 0.00 0.00 0.00 3.69
1629 2144 2.743928 CTGCCGCTGGAACTGGAC 60.744 66.667 0.00 0.00 0.00 4.02
1858 2373 0.111061 TTGGCTGCTGATCACAAGGT 59.889 50.000 0.00 0.00 0.00 3.50
1910 2444 3.113322 TGCACTGTAGTAATCGCGAATC 58.887 45.455 15.24 6.67 0.00 2.52
1913 2447 3.180584 CACTGTAGTAATCGCGAATCAGC 59.819 47.826 15.24 2.78 0.00 4.26
1917 2451 2.464865 AGTAATCGCGAATCAGCTGAC 58.535 47.619 20.97 6.39 34.40 3.51
1918 2452 2.099921 AGTAATCGCGAATCAGCTGACT 59.900 45.455 20.97 8.44 34.40 3.41
1943 2477 6.732154 AGCGAAATAAGTTGATTGATGATGG 58.268 36.000 0.00 0.00 0.00 3.51
1950 2484 5.314718 AGTTGATTGATGATGGGCAGATA 57.685 39.130 0.00 0.00 0.00 1.98
1951 2485 5.314529 AGTTGATTGATGATGGGCAGATAG 58.685 41.667 0.00 0.00 0.00 2.08
1952 2486 4.987963 TGATTGATGATGGGCAGATAGT 57.012 40.909 0.00 0.00 0.00 2.12
1993 2527 5.127519 TGAATTGCTTAATGTGATGAAGGGG 59.872 40.000 0.00 0.00 0.00 4.79
2014 2548 2.417239 GTCTGGTGACGTTTGTTTGTGA 59.583 45.455 0.00 0.00 33.15 3.58
2015 2549 2.417239 TCTGGTGACGTTTGTTTGTGAC 59.583 45.455 0.00 0.00 0.00 3.67
2016 2550 2.418628 CTGGTGACGTTTGTTTGTGACT 59.581 45.455 0.00 0.00 0.00 3.41
2017 2551 2.814919 TGGTGACGTTTGTTTGTGACTT 59.185 40.909 0.00 0.00 0.00 3.01
2018 2552 3.253677 TGGTGACGTTTGTTTGTGACTTT 59.746 39.130 0.00 0.00 0.00 2.66
2019 2553 3.606346 GGTGACGTTTGTTTGTGACTTTG 59.394 43.478 0.00 0.00 0.00 2.77
2020 2554 4.223659 GTGACGTTTGTTTGTGACTTTGT 58.776 39.130 0.00 0.00 0.00 2.83
2021 2555 4.087930 GTGACGTTTGTTTGTGACTTTGTG 59.912 41.667 0.00 0.00 0.00 3.33
2029 2563 6.206395 TGTTTGTGACTTTGTGTGATGAAT 57.794 33.333 0.00 0.00 0.00 2.57
2050 2584 8.913487 TGAATATCAGTACTACGAGGATGTAA 57.087 34.615 0.00 0.00 0.00 2.41
2051 2585 9.516546 TGAATATCAGTACTACGAGGATGTAAT 57.483 33.333 0.00 0.00 0.00 1.89
2052 2586 9.776158 GAATATCAGTACTACGAGGATGTAATG 57.224 37.037 0.00 0.00 34.75 1.90
2053 2587 8.865420 ATATCAGTACTACGAGGATGTAATGT 57.135 34.615 0.00 0.00 34.94 2.71
2054 2588 9.955102 ATATCAGTACTACGAGGATGTAATGTA 57.045 33.333 0.00 0.00 34.94 2.29
2135 2673 1.094073 GCTACTCATGTGGCCTGCTG 61.094 60.000 3.32 0.00 43.61 4.41
2136 2674 0.463295 CTACTCATGTGGCCTGCTGG 60.463 60.000 3.32 5.03 0.00 4.85
2166 2704 1.017387 CCGAGTGGCCAAAATAGAGC 58.983 55.000 7.24 0.00 0.00 4.09
2182 2720 3.473147 AGCAGGTGCAGCTCATAAG 57.527 52.632 17.16 5.57 45.16 1.73
2193 2731 0.817229 GCTCATAAGCCTGCAGGTCC 60.817 60.000 32.81 18.00 43.10 4.46
2234 2772 0.108709 AGAGACTCGAGACGCGTACT 60.109 55.000 21.68 11.70 41.80 2.73
2235 2773 1.133982 AGAGACTCGAGACGCGTACTA 59.866 52.381 21.68 0.37 41.80 1.82
2236 2774 1.255084 GAGACTCGAGACGCGTACTAC 59.745 57.143 21.68 0.00 41.80 2.73
2237 2775 1.135141 AGACTCGAGACGCGTACTACT 60.135 52.381 21.68 4.34 41.80 2.57
2365 2920 3.526534 GGATCTTTCTTCTCAGGGTTCG 58.473 50.000 0.00 0.00 0.00 3.95
2382 2941 3.525537 GTTCGCCAGAGATTCAGATTGA 58.474 45.455 0.00 0.00 0.00 2.57
2393 2952 1.795768 TCAGATTGACCGTGCAACTC 58.204 50.000 0.00 0.00 31.75 3.01
2395 2954 1.872952 CAGATTGACCGTGCAACTCAA 59.127 47.619 0.00 0.00 35.80 3.02
2398 2957 0.310543 TTGACCGTGCAACTCAATGC 59.689 50.000 0.00 0.00 46.58 3.56
2425 2984 4.560136 CGCAGGATAGATATATCAGCGT 57.440 45.455 25.48 3.27 42.27 5.07
2430 2995 6.183360 GCAGGATAGATATATCAGCGTGTACA 60.183 42.308 15.08 0.00 0.00 2.90
2434 2999 8.837389 GGATAGATATATCAGCGTGTACATACA 58.163 37.037 15.08 0.00 0.00 2.29
2474 3043 9.849166 AAAAACCCAAATAATAAGTGTCATACG 57.151 29.630 0.00 0.00 0.00 3.06
2475 3044 8.570068 AAACCCAAATAATAAGTGTCATACGT 57.430 30.769 0.00 0.00 0.00 3.57
2476 3045 9.669887 AAACCCAAATAATAAGTGTCATACGTA 57.330 29.630 0.00 0.00 0.00 3.57
2477 3046 9.841295 AACCCAAATAATAAGTGTCATACGTAT 57.159 29.630 1.14 1.14 35.82 3.06
2478 3047 9.268268 ACCCAAATAATAAGTGTCATACGTATG 57.732 33.333 26.35 26.35 34.76 2.39
2479 3048 8.717821 CCCAAATAATAAGTGTCATACGTATGG 58.282 37.037 30.07 15.09 34.76 2.74
2480 3049 8.227791 CCAAATAATAAGTGTCATACGTATGGC 58.772 37.037 28.93 28.93 38.72 4.40
2481 3050 8.769891 CAAATAATAAGTGTCATACGTATGGCA 58.230 33.333 33.08 33.08 45.17 4.92
2500 3069 3.500680 GGCACGAAGTAACAAAGGATTCA 59.499 43.478 0.00 0.00 41.61 2.57
2515 3084 5.241403 AGGATTCACACATACACAAAGGA 57.759 39.130 0.00 0.00 0.00 3.36
2587 3184 4.996758 TGAGTATCACAACAGGACAATGTG 59.003 41.667 0.00 0.00 42.56 3.21
2605 3202 6.925165 ACAATGTGAACATGAACAAAGAATCC 59.075 34.615 0.00 0.00 36.56 3.01
2607 3204 6.075762 TGTGAACATGAACAAAGAATCCAG 57.924 37.500 0.00 0.00 0.00 3.86
2618 3216 8.141268 TGAACAAAGAATCCAGGAAATACAAAC 58.859 33.333 0.00 0.00 0.00 2.93
2685 3283 7.029563 AGATTTTACCTTTTAATTGAGCAGCG 58.970 34.615 0.00 0.00 0.00 5.18
2699 3297 4.119363 AGCGTGCAGGCCATCCAT 62.119 61.111 26.62 5.22 33.74 3.41
2700 3298 3.589881 GCGTGCAGGCCATCCATC 61.590 66.667 20.50 0.00 33.74 3.51
2701 3299 2.903855 CGTGCAGGCCATCCATCC 60.904 66.667 5.01 0.00 33.74 3.51
2702 3300 2.276409 GTGCAGGCCATCCATCCA 59.724 61.111 5.01 0.00 33.74 3.41
2734 3332 1.602920 GGGAAAAGGCTTCAAGTTGCG 60.603 52.381 0.00 0.00 0.00 4.85
2800 3406 1.445410 GCATCGGCACTGTACGTGA 60.445 57.895 17.98 2.37 46.81 4.35
2845 3451 1.022451 GGGGCGTCTGCGAATTTACA 61.022 55.000 0.00 0.00 44.10 2.41
2846 3452 0.096454 GGGCGTCTGCGAATTTACAC 59.904 55.000 0.00 0.00 44.10 2.90
2847 3453 0.793861 GGCGTCTGCGAATTTACACA 59.206 50.000 0.00 0.00 44.10 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 269 9.715121 TTACTTTGGAACGAATAGAGTATGTTT 57.285 29.630 0.00 0.00 0.00 2.83
263 272 7.306051 CGCTTACTTTGGAACGAATAGAGTATG 60.306 40.741 0.00 0.00 0.00 2.39
265 274 6.032094 CGCTTACTTTGGAACGAATAGAGTA 58.968 40.000 0.00 0.00 0.00 2.59
267 276 4.863131 ACGCTTACTTTGGAACGAATAGAG 59.137 41.667 0.00 0.00 0.00 2.43
268 277 4.813027 ACGCTTACTTTGGAACGAATAGA 58.187 39.130 0.00 0.00 0.00 1.98
269 278 4.863131 AGACGCTTACTTTGGAACGAATAG 59.137 41.667 0.00 0.00 0.00 1.73
270 279 4.813027 AGACGCTTACTTTGGAACGAATA 58.187 39.130 0.00 0.00 0.00 1.75
271 280 3.660865 AGACGCTTACTTTGGAACGAAT 58.339 40.909 0.00 0.00 0.00 3.34
272 281 3.054878 GAGACGCTTACTTTGGAACGAA 58.945 45.455 0.00 0.00 0.00 3.85
273 282 2.034939 TGAGACGCTTACTTTGGAACGA 59.965 45.455 0.00 0.00 0.00 3.85
274 283 2.400399 TGAGACGCTTACTTTGGAACG 58.600 47.619 0.00 0.00 0.00 3.95
275 284 3.808174 AGTTGAGACGCTTACTTTGGAAC 59.192 43.478 0.00 0.00 0.00 3.62
276 285 4.067972 AGTTGAGACGCTTACTTTGGAA 57.932 40.909 0.00 0.00 0.00 3.53
277 286 3.746045 AGTTGAGACGCTTACTTTGGA 57.254 42.857 0.00 0.00 0.00 3.53
278 287 4.527564 CAAAGTTGAGACGCTTACTTTGG 58.472 43.478 22.66 13.90 46.83 3.28
280 289 6.047231 AGTACAAAGTTGAGACGCTTACTTT 58.953 36.000 0.00 0.00 40.42 2.66
281 290 5.598769 AGTACAAAGTTGAGACGCTTACTT 58.401 37.500 0.00 0.00 32.52 2.24
282 291 5.197682 AGTACAAAGTTGAGACGCTTACT 57.802 39.130 0.00 0.00 0.00 2.24
283 292 5.902051 AAGTACAAAGTTGAGACGCTTAC 57.098 39.130 0.00 0.00 0.00 2.34
284 293 8.597662 AAATAAGTACAAAGTTGAGACGCTTA 57.402 30.769 0.00 0.00 0.00 3.09
285 294 7.492352 AAATAAGTACAAAGTTGAGACGCTT 57.508 32.000 0.00 0.00 0.00 4.68
286 295 7.352739 CAAAATAAGTACAAAGTTGAGACGCT 58.647 34.615 0.00 0.00 0.00 5.07
287 296 6.577427 CCAAAATAAGTACAAAGTTGAGACGC 59.423 38.462 0.00 0.00 0.00 5.19
288 297 7.041644 TCCCAAAATAAGTACAAAGTTGAGACG 60.042 37.037 0.00 0.00 0.00 4.18
289 298 8.161699 TCCCAAAATAAGTACAAAGTTGAGAC 57.838 34.615 0.00 0.00 0.00 3.36
290 299 8.215050 TCTCCCAAAATAAGTACAAAGTTGAGA 58.785 33.333 0.00 0.00 0.00 3.27
291 300 8.391075 TCTCCCAAAATAAGTACAAAGTTGAG 57.609 34.615 0.00 0.00 0.00 3.02
292 301 8.215050 TCTCTCCCAAAATAAGTACAAAGTTGA 58.785 33.333 0.00 0.00 0.00 3.18
293 302 8.391075 TCTCTCCCAAAATAAGTACAAAGTTG 57.609 34.615 0.00 0.00 0.00 3.16
294 303 7.665974 CCTCTCTCCCAAAATAAGTACAAAGTT 59.334 37.037 0.00 0.00 0.00 2.66
295 304 7.168905 CCTCTCTCCCAAAATAAGTACAAAGT 58.831 38.462 0.00 0.00 0.00 2.66
296 305 6.599638 CCCTCTCTCCCAAAATAAGTACAAAG 59.400 42.308 0.00 0.00 0.00 2.77
297 306 6.273730 TCCCTCTCTCCCAAAATAAGTACAAA 59.726 38.462 0.00 0.00 0.00 2.83
298 307 5.788533 TCCCTCTCTCCCAAAATAAGTACAA 59.211 40.000 0.00 0.00 0.00 2.41
299 308 5.347124 TCCCTCTCTCCCAAAATAAGTACA 58.653 41.667 0.00 0.00 0.00 2.90
300 309 5.425862 ACTCCCTCTCTCCCAAAATAAGTAC 59.574 44.000 0.00 0.00 0.00 2.73
301 310 5.600749 ACTCCCTCTCTCCCAAAATAAGTA 58.399 41.667 0.00 0.00 0.00 2.24
302 311 4.439860 ACTCCCTCTCTCCCAAAATAAGT 58.560 43.478 0.00 0.00 0.00 2.24
303 312 6.561519 TTACTCCCTCTCTCCCAAAATAAG 57.438 41.667 0.00 0.00 0.00 1.73
304 313 7.292591 CCTATTACTCCCTCTCTCCCAAAATAA 59.707 40.741 0.00 0.00 0.00 1.40
305 314 6.787957 CCTATTACTCCCTCTCTCCCAAAATA 59.212 42.308 0.00 0.00 0.00 1.40
306 315 5.608860 CCTATTACTCCCTCTCTCCCAAAAT 59.391 44.000 0.00 0.00 0.00 1.82
307 316 4.969359 CCTATTACTCCCTCTCTCCCAAAA 59.031 45.833 0.00 0.00 0.00 2.44
308 317 4.557705 CCTATTACTCCCTCTCTCCCAAA 58.442 47.826 0.00 0.00 0.00 3.28
309 318 3.116707 CCCTATTACTCCCTCTCTCCCAA 60.117 52.174 0.00 0.00 0.00 4.12
310 319 2.451273 CCCTATTACTCCCTCTCTCCCA 59.549 54.545 0.00 0.00 0.00 4.37
311 320 2.723010 TCCCTATTACTCCCTCTCTCCC 59.277 54.545 0.00 0.00 0.00 4.30
312 321 4.106663 TCTTCCCTATTACTCCCTCTCTCC 59.893 50.000 0.00 0.00 0.00 3.71
313 322 5.327737 TCTTCCCTATTACTCCCTCTCTC 57.672 47.826 0.00 0.00 0.00 3.20
314 323 5.752864 TTCTTCCCTATTACTCCCTCTCT 57.247 43.478 0.00 0.00 0.00 3.10
315 324 6.555360 TCATTTCTTCCCTATTACTCCCTCTC 59.445 42.308 0.00 0.00 0.00 3.20
316 325 6.453476 TCATTTCTTCCCTATTACTCCCTCT 58.547 40.000 0.00 0.00 0.00 3.69
317 326 6.749036 TCATTTCTTCCCTATTACTCCCTC 57.251 41.667 0.00 0.00 0.00 4.30
318 327 8.814448 TTATCATTTCTTCCCTATTACTCCCT 57.186 34.615 0.00 0.00 0.00 4.20
319 328 9.862149 TTTTATCATTTCTTCCCTATTACTCCC 57.138 33.333 0.00 0.00 0.00 4.30
395 407 6.639563 AGTTCATATAGTGTGTGTATGTGCA 58.360 36.000 0.00 0.00 33.15 4.57
410 422 6.015434 AGGATATGCGTGTGTGAGTTCATATA 60.015 38.462 0.00 0.00 30.12 0.86
411 423 4.991056 GGATATGCGTGTGTGAGTTCATAT 59.009 41.667 0.00 0.00 31.93 1.78
412 424 4.099419 AGGATATGCGTGTGTGAGTTCATA 59.901 41.667 0.00 0.00 0.00 2.15
413 425 3.118629 AGGATATGCGTGTGTGAGTTCAT 60.119 43.478 0.00 0.00 0.00 2.57
414 426 2.233676 AGGATATGCGTGTGTGAGTTCA 59.766 45.455 0.00 0.00 0.00 3.18
415 427 2.893637 AGGATATGCGTGTGTGAGTTC 58.106 47.619 0.00 0.00 0.00 3.01
416 428 4.501571 GGATAGGATATGCGTGTGTGAGTT 60.502 45.833 0.00 0.00 0.00 3.01
417 429 3.005897 GGATAGGATATGCGTGTGTGAGT 59.994 47.826 0.00 0.00 0.00 3.41
418 430 3.579709 GGATAGGATATGCGTGTGTGAG 58.420 50.000 0.00 0.00 0.00 3.51
419 431 2.299013 GGGATAGGATATGCGTGTGTGA 59.701 50.000 0.00 0.00 0.00 3.58
420 432 2.300152 AGGGATAGGATATGCGTGTGTG 59.700 50.000 0.00 0.00 0.00 3.82
421 433 2.300152 CAGGGATAGGATATGCGTGTGT 59.700 50.000 3.67 0.00 0.00 3.72
422 434 2.300152 ACAGGGATAGGATATGCGTGTG 59.700 50.000 13.47 0.99 37.16 3.82
423 435 2.300152 CACAGGGATAGGATATGCGTGT 59.700 50.000 9.81 9.81 38.62 4.49
424 436 2.562738 TCACAGGGATAGGATATGCGTG 59.437 50.000 8.75 8.75 0.00 5.34
425 437 2.828520 CTCACAGGGATAGGATATGCGT 59.171 50.000 0.00 0.00 0.00 5.24
426 438 2.828520 ACTCACAGGGATAGGATATGCG 59.171 50.000 0.00 0.00 0.00 4.73
427 439 4.772624 TGTACTCACAGGGATAGGATATGC 59.227 45.833 0.00 0.00 0.00 3.14
428 440 6.097554 GGATGTACTCACAGGGATAGGATATG 59.902 46.154 0.00 0.00 38.30 1.78
429 441 6.198639 GGATGTACTCACAGGGATAGGATAT 58.801 44.000 0.00 0.00 38.30 1.63
430 442 5.580998 GGATGTACTCACAGGGATAGGATA 58.419 45.833 0.00 0.00 38.30 2.59
431 443 4.421131 GGATGTACTCACAGGGATAGGAT 58.579 47.826 0.00 0.00 38.30 3.24
432 444 3.750922 CGGATGTACTCACAGGGATAGGA 60.751 52.174 0.00 0.00 38.30 2.94
447 481 3.315470 GTCAGCTCAGTATGTCGGATGTA 59.685 47.826 0.00 0.00 37.40 2.29
450 484 2.360483 CTGTCAGCTCAGTATGTCGGAT 59.640 50.000 0.00 0.00 37.40 4.18
486 520 5.032863 CGAGACGACTATGGTAAATTCGTT 58.967 41.667 0.00 0.00 42.69 3.85
529 563 2.744202 GGTGATGTTCGTTCAGCAAGAT 59.256 45.455 2.76 0.00 40.45 2.40
532 566 0.865111 CGGTGATGTTCGTTCAGCAA 59.135 50.000 2.76 0.00 40.70 3.91
534 568 0.669318 TCCGGTGATGTTCGTTCAGC 60.669 55.000 0.00 0.00 38.05 4.26
588 660 6.392354 ACGAGAATAACGGTTCTTTGTGATA 58.608 36.000 0.00 0.00 38.51 2.15
663 845 0.519519 CCAAATTAGAACGTGCCGCA 59.480 50.000 0.00 0.00 0.00 5.69
724 1221 2.230940 CGCACGCTCTACCCAATCG 61.231 63.158 0.00 0.00 0.00 3.34
725 1222 2.526120 GCGCACGCTCTACCCAATC 61.526 63.158 7.96 0.00 38.26 2.67
726 1223 2.511600 GCGCACGCTCTACCCAAT 60.512 61.111 7.96 0.00 38.26 3.16
808 1305 2.363038 GGTGGGGTGGTTTGTTTCTTAC 59.637 50.000 0.00 0.00 0.00 2.34
809 1306 2.668625 GGTGGGGTGGTTTGTTTCTTA 58.331 47.619 0.00 0.00 0.00 2.10
886 1383 2.415983 TTTTCTGAGACTGAGGGGGA 57.584 50.000 0.00 0.00 0.00 4.81
890 1387 3.688673 GGATGCTTTTTCTGAGACTGAGG 59.311 47.826 0.00 0.00 0.00 3.86
909 1406 1.003580 TGGCTTCTGCTTTTCTCGGAT 59.996 47.619 0.00 0.00 39.59 4.18
1341 1856 5.718146 ACATCCATAAGTCTATCATCTGCG 58.282 41.667 0.00 0.00 0.00 5.18
1594 2109 3.923864 ACGAGGTCGGCAGCACAA 61.924 61.111 4.13 0.00 44.95 3.33
1910 2444 4.864806 TCAACTTATTTCGCTAGTCAGCTG 59.135 41.667 7.63 7.63 46.26 4.24
1913 2447 7.525688 TCAATCAACTTATTTCGCTAGTCAG 57.474 36.000 0.00 0.00 0.00 3.51
1917 2451 8.013947 CCATCATCAATCAACTTATTTCGCTAG 58.986 37.037 0.00 0.00 0.00 3.42
1918 2452 7.041167 CCCATCATCAATCAACTTATTTCGCTA 60.041 37.037 0.00 0.00 0.00 4.26
1922 2456 6.808829 TGCCCATCATCAATCAACTTATTTC 58.191 36.000 0.00 0.00 0.00 2.17
1923 2457 6.608405 TCTGCCCATCATCAATCAACTTATTT 59.392 34.615 0.00 0.00 0.00 1.40
1943 2477 2.618053 ACGCAGTTTGTACTATCTGCC 58.382 47.619 24.86 13.41 46.92 4.85
1950 2484 3.985008 TCATGTGTACGCAGTTTGTACT 58.015 40.909 15.35 0.00 37.78 2.73
1951 2485 4.718858 TTCATGTGTACGCAGTTTGTAC 57.281 40.909 15.35 0.00 37.78 2.90
1952 2486 5.684850 CAATTCATGTGTACGCAGTTTGTA 58.315 37.500 15.35 3.00 37.78 2.41
1993 2527 2.417239 TCACAAACAAACGTCACCAGAC 59.583 45.455 0.00 0.00 41.46 3.51
2014 2548 9.587772 GTAGTACTGATATTCATCACACAAAGT 57.412 33.333 5.39 0.00 36.22 2.66
2015 2549 8.746751 CGTAGTACTGATATTCATCACACAAAG 58.253 37.037 5.39 0.00 36.22 2.77
2016 2550 8.463607 TCGTAGTACTGATATTCATCACACAAA 58.536 33.333 5.39 0.00 36.22 2.83
2017 2551 7.992008 TCGTAGTACTGATATTCATCACACAA 58.008 34.615 5.39 0.00 36.22 3.33
2018 2552 7.255139 CCTCGTAGTACTGATATTCATCACACA 60.255 40.741 5.39 0.00 36.22 3.72
2019 2553 7.041303 TCCTCGTAGTACTGATATTCATCACAC 60.041 40.741 5.39 0.00 36.22 3.82
2020 2554 6.996282 TCCTCGTAGTACTGATATTCATCACA 59.004 38.462 5.39 0.00 36.22 3.58
2021 2555 7.436430 TCCTCGTAGTACTGATATTCATCAC 57.564 40.000 5.39 0.00 36.22 3.06
2029 2563 9.783081 TTACATTACATCCTCGTAGTACTGATA 57.217 33.333 5.39 0.00 0.00 2.15
2050 2584 6.121590 TGTCTGTGCAATCCATACATTACAT 58.878 36.000 0.00 0.00 0.00 2.29
2051 2585 5.495640 TGTCTGTGCAATCCATACATTACA 58.504 37.500 0.00 0.00 0.00 2.41
2052 2586 6.624352 ATGTCTGTGCAATCCATACATTAC 57.376 37.500 0.00 0.00 0.00 1.89
2053 2587 8.210265 TCTTATGTCTGTGCAATCCATACATTA 58.790 33.333 10.67 3.63 31.16 1.90
2054 2588 7.056006 TCTTATGTCTGTGCAATCCATACATT 58.944 34.615 10.67 0.00 31.16 2.71
2137 2675 4.778415 CCACTCGGTCGGCACTCG 62.778 72.222 0.00 0.00 40.90 4.18
2143 2681 0.391927 TATTTTGGCCACTCGGTCGG 60.392 55.000 3.88 0.00 41.18 4.79
2144 2682 1.006832 CTATTTTGGCCACTCGGTCG 58.993 55.000 3.88 0.00 41.18 4.79
2145 2683 2.280628 CTCTATTTTGGCCACTCGGTC 58.719 52.381 3.88 0.00 37.45 4.79
2182 2720 4.101448 ACGGATGGACCTGCAGGC 62.101 66.667 33.06 23.62 39.32 4.85
2193 2731 3.751698 TCTCGACCATATGTAGACGGATG 59.248 47.826 1.24 0.00 0.00 3.51
2234 2772 3.740832 CGTTGTCACAAAGATGAGCAGTA 59.259 43.478 0.00 0.00 0.00 2.74
2235 2773 2.545526 CGTTGTCACAAAGATGAGCAGT 59.454 45.455 0.00 0.00 0.00 4.40
2236 2774 2.663879 GCGTTGTCACAAAGATGAGCAG 60.664 50.000 7.74 0.00 0.00 4.24
2237 2775 1.264020 GCGTTGTCACAAAGATGAGCA 59.736 47.619 7.74 0.00 0.00 4.26
2365 2920 2.208431 CGGTCAATCTGAATCTCTGGC 58.792 52.381 0.00 0.00 0.00 4.85
2382 2941 2.616330 CCGCATTGAGTTGCACGGT 61.616 57.895 0.31 0.00 42.91 4.83
2398 2957 4.820173 TGATATATCTATCCTGCGTACCCG 59.180 45.833 13.79 0.00 34.03 5.28
2399 2958 5.278561 GCTGATATATCTATCCTGCGTACCC 60.279 48.000 13.79 0.00 34.03 3.69
2413 2972 7.253783 GCACATGTATGTACACGCTGATATATC 60.254 40.741 5.73 5.73 39.39 1.63
2424 2983 4.418013 TTGCTTGCACATGTATGTACAC 57.582 40.909 0.00 0.00 39.39 2.90
2425 2984 5.444663 TTTTGCTTGCACATGTATGTACA 57.555 34.783 0.00 0.00 39.39 2.90
2451 3020 9.841295 ATACGTATGACACTTATTATTTGGGTT 57.159 29.630 7.41 0.00 0.00 4.11
2452 3021 9.268268 CATACGTATGACACTTATTATTTGGGT 57.732 33.333 27.88 0.00 35.75 4.51
2453 3022 8.717821 CCATACGTATGACACTTATTATTTGGG 58.282 37.037 32.19 9.28 35.75 4.12
2454 3023 8.227791 GCCATACGTATGACACTTATTATTTGG 58.772 37.037 32.19 15.12 35.75 3.28
2455 3024 8.769891 TGCCATACGTATGACACTTATTATTTG 58.230 33.333 32.19 13.91 35.75 2.32
2456 3025 8.770828 GTGCCATACGTATGACACTTATTATTT 58.229 33.333 34.20 0.00 41.80 1.40
2457 3026 8.306680 GTGCCATACGTATGACACTTATTATT 57.693 34.615 34.20 0.00 41.80 1.40
2458 3027 7.884816 GTGCCATACGTATGACACTTATTAT 57.115 36.000 34.20 0.61 41.80 1.28
2474 3043 3.998341 TCCTTTGTTACTTCGTGCCATAC 59.002 43.478 0.00 0.00 0.00 2.39
2475 3044 4.274602 TCCTTTGTTACTTCGTGCCATA 57.725 40.909 0.00 0.00 0.00 2.74
2476 3045 3.134574 TCCTTTGTTACTTCGTGCCAT 57.865 42.857 0.00 0.00 0.00 4.40
2477 3046 2.623878 TCCTTTGTTACTTCGTGCCA 57.376 45.000 0.00 0.00 0.00 4.92
2478 3047 3.500680 TGAATCCTTTGTTACTTCGTGCC 59.499 43.478 0.00 0.00 0.00 5.01
2479 3048 4.024387 TGTGAATCCTTTGTTACTTCGTGC 60.024 41.667 0.00 0.00 0.00 5.34
2480 3049 5.007234 TGTGTGAATCCTTTGTTACTTCGTG 59.993 40.000 0.00 0.00 0.00 4.35
2481 3050 5.120399 TGTGTGAATCCTTTGTTACTTCGT 58.880 37.500 0.00 0.00 0.00 3.85
2482 3051 5.666969 TGTGTGAATCCTTTGTTACTTCG 57.333 39.130 0.00 0.00 0.00 3.79
2483 3052 8.015658 GTGTATGTGTGAATCCTTTGTTACTTC 58.984 37.037 0.00 0.00 0.00 3.01
2484 3053 7.500892 TGTGTATGTGTGAATCCTTTGTTACTT 59.499 33.333 0.00 0.00 0.00 2.24
2485 3054 6.995686 TGTGTATGTGTGAATCCTTTGTTACT 59.004 34.615 0.00 0.00 0.00 2.24
2486 3055 7.197071 TGTGTATGTGTGAATCCTTTGTTAC 57.803 36.000 0.00 0.00 0.00 2.50
2487 3056 7.809546 TTGTGTATGTGTGAATCCTTTGTTA 57.190 32.000 0.00 0.00 0.00 2.41
2488 3057 6.707440 TTGTGTATGTGTGAATCCTTTGTT 57.293 33.333 0.00 0.00 0.00 2.83
2489 3058 6.239008 CCTTTGTGTATGTGTGAATCCTTTGT 60.239 38.462 0.00 0.00 0.00 2.83
2490 3059 6.016360 TCCTTTGTGTATGTGTGAATCCTTTG 60.016 38.462 0.00 0.00 0.00 2.77
2500 3069 3.314080 CGGTGTTTCCTTTGTGTATGTGT 59.686 43.478 0.00 0.00 0.00 3.72
2587 3184 5.964958 TCCTGGATTCTTTGTTCATGTTC 57.035 39.130 0.00 0.00 0.00 3.18
2605 3202 2.413634 GCGTTCCGGTTTGTATTTCCTG 60.414 50.000 0.00 0.00 0.00 3.86
2607 3204 1.536331 TGCGTTCCGGTTTGTATTTCC 59.464 47.619 0.00 0.00 0.00 3.13
2685 3283 1.152610 ATGGATGGATGGCCTGCAC 60.153 57.895 3.32 0.00 34.31 4.57
2699 3297 0.624206 TTCCCAGGAGCATGGATGGA 60.624 55.000 2.22 0.00 43.57 3.41
2700 3298 0.259647 TTTCCCAGGAGCATGGATGG 59.740 55.000 2.22 0.00 43.57 3.51
2701 3299 2.029623 CTTTTCCCAGGAGCATGGATG 58.970 52.381 2.22 0.00 43.57 3.51
2702 3300 1.063417 CCTTTTCCCAGGAGCATGGAT 60.063 52.381 2.22 0.00 43.57 3.41
2734 3332 3.249687 CTGGGGAAGTAACAGCCAC 57.750 57.895 0.00 0.00 0.00 5.01
2753 3351 3.057946 GCTCCTCTTGCTAAACCAGTTTG 60.058 47.826 6.03 0.00 34.23 2.93
2757 3355 1.338200 ACGCTCCTCTTGCTAAACCAG 60.338 52.381 0.00 0.00 0.00 4.00
2800 3406 0.034380 TATATAGCGCCGGAGCTCCT 60.034 55.000 36.67 25.48 45.67 3.69
2832 3438 2.157834 ACGGTGTGTAAATTCGCAGA 57.842 45.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.