Multiple sequence alignment - TraesCS3A01G256900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G256900 chr3A 100.000 7296 0 0 1 7296 478694143 478686848 0.000000e+00 13474.0
1 TraesCS3A01G256900 chr3A 89.459 1053 82 16 4130 5169 478679448 478678412 0.000000e+00 1303.0
2 TraesCS3A01G256900 chr3A 93.233 266 17 1 1600 1865 492738418 492738682 2.470000e-104 390.0
3 TraesCS3A01G256900 chr3A 87.611 226 24 3 3846 4068 478679672 478679448 7.260000e-65 259.0
4 TraesCS3A01G256900 chr3A 84.932 146 11 2 6234 6376 478678412 478678275 3.550000e-28 137.0
5 TraesCS3A01G256900 chr3A 91.358 81 2 3 4585 4663 478689945 478689868 1.000000e-18 106.0
6 TraesCS3A01G256900 chr3A 83.784 111 8 9 4585 4692 478679376 478679273 6.020000e-16 97.1
7 TraesCS3A01G256900 chr3B 95.818 3898 123 17 1883 5756 465343748 465339867 0.000000e+00 6259.0
8 TraesCS3A01G256900 chr3B 94.988 858 33 4 5690 6540 465339906 465339052 0.000000e+00 1338.0
9 TraesCS3A01G256900 chr3B 94.731 835 29 7 781 1604 465344570 465343740 0.000000e+00 1284.0
10 TraesCS3A01G256900 chr3B 92.630 787 41 9 810 1584 465375281 465374500 0.000000e+00 1116.0
11 TraesCS3A01G256900 chr3B 86.546 1048 88 26 4130 5169 465331293 465330291 0.000000e+00 1105.0
12 TraesCS3A01G256900 chr3B 86.164 1048 92 26 4130 5169 465277361 465276359 0.000000e+00 1083.0
13 TraesCS3A01G256900 chr3B 81.715 618 84 14 1 616 465376745 465376155 8.510000e-134 488.0
14 TraesCS3A01G256900 chr3B 91.822 269 21 1 1597 1865 26935814 26936081 2.490000e-99 374.0
15 TraesCS3A01G256900 chr3B 89.333 225 22 2 3844 4068 465277583 465277361 1.550000e-71 281.0
16 TraesCS3A01G256900 chr3B 89.333 225 22 2 3844 4068 465331515 465331293 1.550000e-71 281.0
17 TraesCS3A01G256900 chr3B 84.906 159 15 5 6234 6388 465276359 465276206 1.270000e-32 152.0
18 TraesCS3A01G256900 chr3B 84.277 159 16 5 6234 6388 465330291 465330138 5.900000e-31 147.0
19 TraesCS3A01G256900 chr3B 91.358 81 2 3 4585 4663 465341438 465341361 1.000000e-18 106.0
20 TraesCS3A01G256900 chr3D 96.250 2560 78 10 1860 4406 359323576 359321022 0.000000e+00 4180.0
21 TraesCS3A01G256900 chr3D 95.348 2171 74 12 4392 6540 359320931 359318766 0.000000e+00 3424.0
22 TraesCS3A01G256900 chr3D 94.118 833 28 9 781 1602 359324393 359323571 0.000000e+00 1247.0
23 TraesCS3A01G256900 chr3D 83.495 618 76 13 1 616 359325778 359325185 2.970000e-153 553.0
24 TraesCS3A01G256900 chr3D 92.424 264 17 3 1601 1864 597648596 597648336 2.490000e-99 374.0
25 TraesCS3A01G256900 chr3D 91.358 81 2 3 4585 4663 359321229 359321152 1.000000e-18 106.0
26 TraesCS3A01G256900 chr2B 95.524 782 11 5 6539 7296 1246824 1246043 0.000000e+00 1229.0
27 TraesCS3A01G256900 chr2B 79.004 281 27 9 6540 6812 63142155 63142411 5.860000e-36 163.0
28 TraesCS3A01G256900 chr5A 94.886 743 19 5 6571 7296 322192226 322191486 0.000000e+00 1144.0
29 TraesCS3A01G256900 chr5A 93.686 776 26 6 6540 7296 35192594 35191823 0.000000e+00 1140.0
30 TraesCS3A01G256900 chr5A 94.035 285 17 0 7012 7296 552504726 552504442 4.040000e-117 433.0
31 TraesCS3A01G256900 chr5A 85.069 288 31 6 7009 7296 552389029 552388754 4.310000e-72 283.0
32 TraesCS3A01G256900 chr5A 88.263 213 23 2 6601 6812 696953913 696954124 3.380000e-63 254.0
33 TraesCS3A01G256900 chr5A 87.826 115 14 0 6693 6807 49936501 49936615 1.280000e-27 135.0
34 TraesCS3A01G256900 chr5A 85.000 120 18 0 6693 6812 35551588 35551469 9.940000e-24 122.0
35 TraesCS3A01G256900 chr7D 89.912 793 45 10 6536 7296 6962323 6961534 0.000000e+00 989.0
36 TraesCS3A01G256900 chr7D 80.212 283 21 14 6539 6810 578503874 578503616 5.820000e-41 180.0
37 TraesCS3A01G256900 chr5B 94.792 288 15 0 7009 7296 531511928 531511641 4.010000e-122 449.0
38 TraesCS3A01G256900 chr5B 91.822 269 21 1 1597 1865 686123310 686123577 2.490000e-99 374.0
39 TraesCS3A01G256900 chr5D 92.708 288 21 0 7009 7296 437289119 437288832 4.070000e-112 416.0
40 TraesCS3A01G256900 chr5D 86.047 86 8 3 7009 7092 437218340 437218257 1.010000e-13 89.8
41 TraesCS3A01G256900 chr4D 92.565 269 19 1 1600 1868 216636393 216636126 1.150000e-102 385.0
42 TraesCS3A01G256900 chr4D 93.000 100 5 2 4209 4306 483304228 483304327 2.120000e-30 145.0
43 TraesCS3A01G256900 chr1D 92.424 264 19 1 1601 1864 178458767 178459029 6.910000e-100 375.0
44 TraesCS3A01G256900 chr4B 91.822 269 21 1 1597 1865 59051596 59051863 2.490000e-99 374.0
45 TraesCS3A01G256900 chr4B 82.895 152 8 12 6539 6672 446506981 446507132 3.580000e-23 121.0
46 TraesCS3A01G256900 chr1B 91.822 269 21 1 1597 1865 640820007 640820274 2.490000e-99 374.0
47 TraesCS3A01G256900 chr1B 91.822 269 21 1 1597 1865 659848798 659849065 2.490000e-99 374.0
48 TraesCS3A01G256900 chr7A 86.458 192 22 2 6614 6804 402186552 402186740 2.670000e-49 207.0
49 TraesCS3A01G256900 chr7B 87.342 158 7 9 6539 6685 11013585 11013430 1.260000e-37 169.0
50 TraesCS3A01G256900 chr7B 97.468 79 2 0 4195 4273 234405330 234405408 1.280000e-27 135.0
51 TraesCS3A01G256900 chr6A 85.890 163 13 5 6536 6688 597450904 597450742 1.630000e-36 165.0
52 TraesCS3A01G256900 chr4A 95.402 87 3 1 4220 4306 74937077 74936992 3.550000e-28 137.0
53 TraesCS3A01G256900 chr6D 97.468 79 2 0 4195 4273 168680761 168680683 1.280000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G256900 chr3A 478686848 478694143 7295 True 13474.000000 13474 100.000000 1 7296 1 chr3A.!!$R1 7295
1 TraesCS3A01G256900 chr3A 478678275 478679672 1397 True 449.025000 1303 86.446500 3846 6376 4 chr3A.!!$R3 2530
2 TraesCS3A01G256900 chr3B 465339052 465344570 5518 True 2246.750000 6259 94.223750 781 6540 4 chr3B.!!$R3 5759
3 TraesCS3A01G256900 chr3B 465374500 465376745 2245 True 802.000000 1116 87.172500 1 1584 2 chr3B.!!$R4 1583
4 TraesCS3A01G256900 chr3B 465330138 465331515 1377 True 511.000000 1105 86.718667 3844 6388 3 chr3B.!!$R2 2544
5 TraesCS3A01G256900 chr3B 465276206 465277583 1377 True 505.333333 1083 86.801000 3844 6388 3 chr3B.!!$R1 2544
6 TraesCS3A01G256900 chr3D 359318766 359325778 7012 True 1902.000000 4180 92.113800 1 6540 5 chr3D.!!$R2 6539
7 TraesCS3A01G256900 chr2B 1246043 1246824 781 True 1229.000000 1229 95.524000 6539 7296 1 chr2B.!!$R1 757
8 TraesCS3A01G256900 chr5A 322191486 322192226 740 True 1144.000000 1144 94.886000 6571 7296 1 chr5A.!!$R3 725
9 TraesCS3A01G256900 chr5A 35191823 35192594 771 True 1140.000000 1140 93.686000 6540 7296 1 chr5A.!!$R1 756
10 TraesCS3A01G256900 chr7D 6961534 6962323 789 True 989.000000 989 89.912000 6536 7296 1 chr7D.!!$R1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 395 0.040425 GGTGTTCGCTGCGACAAAAT 60.040 50.0 25.94 0.0 34.89 1.82 F
620 622 0.175989 GAGACCGGCCCAAACTAGAG 59.824 60.0 0.00 0.0 0.00 2.43 F
904 1817 0.178068 TCCATCGAAACCCTAGCAGC 59.822 55.0 0.00 0.0 0.00 5.25 F
1614 2538 0.179026 TGAGATACTCCCTCCGTCCG 60.179 60.0 0.00 0.0 0.00 4.79 F
1931 2855 0.170339 GGTCCCGTGCTATTGTTTGC 59.830 55.0 0.00 0.0 0.00 3.68 F
3125 4051 0.322975 AGAATGCTGCCTCGTCAAGT 59.677 50.0 0.00 0.0 0.00 3.16 F
4856 5912 0.459899 TTGATATCGTGGCTCGCACT 59.540 50.0 3.73 0.0 39.67 4.40 F
4970 6026 0.246086 CTCTTCAGAGCGCCAAGACT 59.754 55.0 2.29 0.0 35.13 3.24 F
5683 6799 0.323629 CCGTGCCTCCAGAACCTTTA 59.676 55.0 0.00 0.0 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 2530 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.0 40.63 4.63 R
1852 2776 0.629596 TCCGGACATACTCCCTCTGT 59.370 55.000 0.00 0.0 35.21 3.41 R
1916 2840 0.881118 ACAGGCAAACAATAGCACGG 59.119 50.000 0.00 0.0 0.00 4.94 R
3125 4051 3.025978 CCCAAGCAATGATAAAGCTCCA 58.974 45.455 0.00 0.0 37.70 3.86 R
3708 4634 3.127030 GTCAGGAAAGGGAAAGTTATGCG 59.873 47.826 0.00 0.0 0.00 4.73 R
4970 6026 0.891373 CGCTCTGAAGAACTCCTCCA 59.109 55.000 0.00 0.0 0.00 3.86 R
6152 7295 0.961753 GTGTTTTGGGAGGCTTCAGG 59.038 55.000 0.00 0.0 0.00 3.86 R
6175 7318 1.153309 TGATCCATGCCTGTGCTCG 60.153 57.895 0.00 0.0 38.71 5.03 R
7200 8394 1.906995 TGCCGATGCAGAGGATCAA 59.093 52.632 13.76 0.0 44.23 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.344763 GTCTAGTTCCAGCACCAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
63 64 2.040544 CATCCCTCACCGGTTGCAC 61.041 63.158 2.97 0.00 0.00 4.57
65 66 4.263572 CCCTCACCGGTTGCACCA 62.264 66.667 2.97 0.00 38.47 4.17
68 69 1.003355 CTCACCGGTTGCACCAGAT 60.003 57.895 2.97 0.00 38.47 2.90
96 97 1.271163 CCGGTTCCAGGAAAGTGCTTA 60.271 52.381 2.45 0.00 0.00 3.09
103 104 2.025887 CCAGGAAAGTGCTTATGGTCCT 60.026 50.000 0.00 0.00 35.87 3.85
107 108 5.297776 CAGGAAAGTGCTTATGGTCCTTATG 59.702 44.000 1.34 0.00 33.15 1.90
111 112 7.093945 GGAAAGTGCTTATGGTCCTTATGAAAA 60.094 37.037 0.00 0.00 0.00 2.29
167 168 1.611673 GCTGGTAGCAATCACTGGTGT 60.612 52.381 0.00 0.00 41.89 4.16
184 185 4.737352 CTGGTGTCAGTTCCAACATTTTGG 60.737 45.833 4.10 4.10 43.35 3.28
203 204 3.351416 GGACACCACCGTTTCGCC 61.351 66.667 0.00 0.00 0.00 5.54
249 250 3.361977 GCCGGTTTGCCACATCGT 61.362 61.111 1.90 0.00 34.09 3.73
252 253 2.314647 CGGTTTGCCACATCGTCGT 61.315 57.895 0.00 0.00 34.09 4.34
262 263 0.374063 ACATCGTCGTCGTAGCTCTG 59.626 55.000 1.33 0.00 38.33 3.35
269 270 2.414481 GTCGTCGTAGCTCTGTTAGTGA 59.586 50.000 0.00 0.00 0.00 3.41
271 272 3.309138 TCGTCGTAGCTCTGTTAGTGATC 59.691 47.826 0.00 0.00 0.00 2.92
274 275 3.309138 TCGTAGCTCTGTTAGTGATCGTC 59.691 47.826 0.00 0.00 0.00 4.20
278 279 2.445316 CTCTGTTAGTGATCGTCGCAG 58.555 52.381 0.00 0.00 0.00 5.18
307 309 4.492160 ATCGCCGTCACGTCGCAT 62.492 61.111 0.00 0.00 0.00 4.73
313 315 4.134187 GTCACGTCGCATGCACGG 62.134 66.667 31.38 23.79 41.73 4.94
314 316 4.656117 TCACGTCGCATGCACGGT 62.656 61.111 31.38 18.75 41.73 4.83
318 320 3.353836 GTCGCATGCACGGTGGTT 61.354 61.111 19.57 0.00 0.00 3.67
319 321 3.047280 TCGCATGCACGGTGGTTC 61.047 61.111 19.57 0.00 0.00 3.62
342 344 1.588667 CAAAAGTTGCAGCCGCGTT 60.589 52.632 4.92 0.00 42.97 4.84
348 350 0.939106 GTTGCAGCCGCGTTGATTTT 60.939 50.000 4.92 0.00 42.97 1.82
378 380 2.281761 CCGCAGCTCCTTTGGTGT 60.282 61.111 0.00 0.00 37.70 4.16
383 385 0.886490 CAGCTCCTTTGGTGTTCGCT 60.886 55.000 0.00 0.00 0.00 4.93
384 386 0.886490 AGCTCCTTTGGTGTTCGCTG 60.886 55.000 0.00 0.00 0.00 5.18
385 387 1.576421 CTCCTTTGGTGTTCGCTGC 59.424 57.895 0.00 0.00 0.00 5.25
386 388 2.175184 CTCCTTTGGTGTTCGCTGCG 62.175 60.000 17.25 17.25 0.00 5.18
387 389 2.250939 CCTTTGGTGTTCGCTGCGA 61.251 57.895 22.24 22.24 0.00 5.10
388 390 1.082756 CTTTGGTGTTCGCTGCGAC 60.083 57.895 25.94 19.14 34.89 5.19
389 391 1.771073 CTTTGGTGTTCGCTGCGACA 61.771 55.000 25.94 21.42 34.89 4.35
390 392 1.369839 TTTGGTGTTCGCTGCGACAA 61.370 50.000 25.94 21.25 34.89 3.18
391 393 1.369839 TTGGTGTTCGCTGCGACAAA 61.370 50.000 25.94 11.16 34.89 2.83
392 394 1.353804 GGTGTTCGCTGCGACAAAA 59.646 52.632 25.94 7.21 34.89 2.44
393 395 0.040425 GGTGTTCGCTGCGACAAAAT 60.040 50.000 25.94 0.00 34.89 1.82
394 396 1.318251 GTGTTCGCTGCGACAAAATC 58.682 50.000 25.94 11.12 34.89 2.17
404 406 3.569957 GACAAAATCGACTCGCTGC 57.430 52.632 0.00 0.00 0.00 5.25
447 449 1.909781 CCCCCAAGCTGCAACACAT 60.910 57.895 1.02 0.00 0.00 3.21
454 456 0.399454 AGCTGCAACACATCTCCTGT 59.601 50.000 1.02 0.00 39.20 4.00
455 457 0.801251 GCTGCAACACATCTCCTGTC 59.199 55.000 0.00 0.00 35.29 3.51
458 460 1.639298 GCAACACATCTCCTGTCGGC 61.639 60.000 0.00 0.00 35.29 5.54
460 462 1.480212 AACACATCTCCTGTCGGCCA 61.480 55.000 2.24 0.00 35.29 5.36
506 508 0.756294 GGTTGTGGTGGGGAAAAAGG 59.244 55.000 0.00 0.00 0.00 3.11
541 543 3.721370 AATGGATGGGTGCCGCTCC 62.721 63.158 2.65 2.65 0.00 4.70
592 594 4.634703 ACCCACGCGGTGATTGCA 62.635 61.111 12.47 0.00 46.09 4.08
596 598 2.030412 ACGCGGTGATTGCAGTCA 59.970 55.556 12.47 7.97 0.00 3.41
598 600 2.029288 CGCGGTGATTGCAGTCACT 61.029 57.895 32.92 0.00 46.02 3.41
599 601 0.735978 CGCGGTGATTGCAGTCACTA 60.736 55.000 32.92 3.10 46.02 2.74
616 618 0.541863 CTATGAGACCGGCCCAAACT 59.458 55.000 0.00 0.00 0.00 2.66
617 619 1.760613 CTATGAGACCGGCCCAAACTA 59.239 52.381 0.00 0.00 0.00 2.24
618 620 0.541863 ATGAGACCGGCCCAAACTAG 59.458 55.000 0.00 0.00 0.00 2.57
619 621 0.543410 TGAGACCGGCCCAAACTAGA 60.543 55.000 0.00 0.00 0.00 2.43
620 622 0.175989 GAGACCGGCCCAAACTAGAG 59.824 60.000 0.00 0.00 0.00 2.43
621 623 1.449778 GACCGGCCCAAACTAGAGC 60.450 63.158 0.00 0.00 0.00 4.09
622 624 2.124695 CCGGCCCAAACTAGAGCC 60.125 66.667 0.00 0.00 42.18 4.70
624 626 2.124695 GGCCCAAACTAGAGCCGG 60.125 66.667 0.00 0.00 35.30 6.13
625 627 2.824489 GCCCAAACTAGAGCCGGC 60.824 66.667 21.89 21.89 0.00 6.13
626 628 2.511600 CCCAAACTAGAGCCGGCG 60.512 66.667 23.20 9.47 0.00 6.46
627 629 2.511600 CCAAACTAGAGCCGGCGG 60.512 66.667 24.35 24.35 0.00 6.13
628 630 2.264794 CAAACTAGAGCCGGCGGT 59.735 61.111 28.82 15.23 0.00 5.68
629 631 1.810030 CAAACTAGAGCCGGCGGTC 60.810 63.158 28.82 22.08 36.73 4.79
630 632 3.015312 AAACTAGAGCCGGCGGTCC 62.015 63.158 28.82 18.95 37.19 4.46
641 643 4.204891 GCGGTCCGTCGCGAAATG 62.205 66.667 12.06 3.43 46.23 2.32
652 654 3.363182 CGTCGCGAAATGTTTTCCTTGTA 60.363 43.478 12.06 0.00 0.00 2.41
653 655 4.529446 GTCGCGAAATGTTTTCCTTGTAA 58.471 39.130 12.06 0.00 0.00 2.41
697 710 8.795786 TGATACCGAAAATTTTGAAGTTTGAG 57.204 30.769 8.47 0.00 0.00 3.02
699 712 9.244799 GATACCGAAAATTTTGAAGTTTGAGTT 57.755 29.630 8.47 0.00 0.00 3.01
700 713 7.899178 ACCGAAAATTTTGAAGTTTGAGTTT 57.101 28.000 8.47 0.00 0.00 2.66
701 714 8.317891 ACCGAAAATTTTGAAGTTTGAGTTTT 57.682 26.923 8.47 0.00 0.00 2.43
702 715 8.227119 ACCGAAAATTTTGAAGTTTGAGTTTTG 58.773 29.630 8.47 0.00 0.00 2.44
703 716 8.439286 CCGAAAATTTTGAAGTTTGAGTTTTGA 58.561 29.630 8.47 0.00 0.00 2.69
736 749 1.000938 GCCGAGATCCAAAATGCCATC 60.001 52.381 0.00 0.00 0.00 3.51
739 752 3.496692 CCGAGATCCAAAATGCCATCCTA 60.497 47.826 0.00 0.00 0.00 2.94
740 753 3.750130 CGAGATCCAAAATGCCATCCTAG 59.250 47.826 0.00 0.00 0.00 3.02
741 754 4.503817 CGAGATCCAAAATGCCATCCTAGA 60.504 45.833 0.00 0.00 0.00 2.43
742 755 5.568392 GAGATCCAAAATGCCATCCTAGAT 58.432 41.667 0.00 0.00 0.00 1.98
743 756 5.322754 AGATCCAAAATGCCATCCTAGATG 58.677 41.667 0.00 0.00 0.00 2.90
744 757 4.794311 TCCAAAATGCCATCCTAGATGA 57.206 40.909 6.15 0.00 0.00 2.92
746 759 3.255149 CCAAAATGCCATCCTAGATGAGC 59.745 47.826 6.15 8.24 0.00 4.26
747 760 2.875094 AATGCCATCCTAGATGAGCC 57.125 50.000 6.15 0.00 0.00 4.70
748 761 0.990374 ATGCCATCCTAGATGAGCCC 59.010 55.000 6.15 0.00 0.00 5.19
750 763 0.612744 GCCATCCTAGATGAGCCCTC 59.387 60.000 6.15 0.00 0.00 4.30
751 764 1.830883 GCCATCCTAGATGAGCCCTCT 60.831 57.143 6.15 0.00 0.00 3.69
753 766 2.225343 CCATCCTAGATGAGCCCTCTCT 60.225 54.545 6.15 0.87 40.03 3.10
754 767 3.011144 CCATCCTAGATGAGCCCTCTCTA 59.989 52.174 6.15 1.87 40.03 2.43
756 769 2.041081 TCCTAGATGAGCCCTCTCTAGC 59.959 54.545 17.27 0.00 40.03 3.42
757 770 2.041620 CCTAGATGAGCCCTCTCTAGCT 59.958 54.545 17.27 0.00 43.55 3.32
759 772 3.893753 AGATGAGCCCTCTCTAGCTAA 57.106 47.619 0.00 0.00 40.11 3.09
761 774 3.895041 AGATGAGCCCTCTCTAGCTAAAC 59.105 47.826 0.00 0.00 40.11 2.01
762 775 3.101643 TGAGCCCTCTCTAGCTAAACA 57.898 47.619 0.00 0.00 40.11 2.83
764 777 3.838317 TGAGCCCTCTCTAGCTAAACAAA 59.162 43.478 0.00 0.00 40.11 2.83
766 779 5.029807 AGCCCTCTCTAGCTAAACAAATC 57.970 43.478 0.00 0.00 37.64 2.17
767 780 4.130857 GCCCTCTCTAGCTAAACAAATCC 58.869 47.826 0.00 0.00 0.00 3.01
769 782 4.445019 CCCTCTCTAGCTAAACAAATCCCC 60.445 50.000 0.00 0.00 0.00 4.81
770 783 4.445019 CCTCTCTAGCTAAACAAATCCCCC 60.445 50.000 0.00 0.00 0.00 5.40
771 784 4.371681 TCTCTAGCTAAACAAATCCCCCT 58.628 43.478 0.00 0.00 0.00 4.79
773 786 5.968167 TCTCTAGCTAAACAAATCCCCCTAA 59.032 40.000 0.00 0.00 0.00 2.69
774 787 6.445786 TCTCTAGCTAAACAAATCCCCCTAAA 59.554 38.462 0.00 0.00 0.00 1.85
776 789 7.471890 TCTAGCTAAACAAATCCCCCTAAAAA 58.528 34.615 0.00 0.00 0.00 1.94
806 1520 4.286910 ACAAATCAATTCCGTGTTCGTTG 58.713 39.130 0.00 0.00 35.01 4.10
835 1748 1.679680 CGTAGAGATACGAGGGGCAAA 59.320 52.381 1.70 0.00 45.45 3.68
840 1753 0.307760 GATACGAGGGGCAAATTGCG 59.692 55.000 12.15 0.00 46.21 4.85
904 1817 0.178068 TCCATCGAAACCCTAGCAGC 59.822 55.000 0.00 0.00 0.00 5.25
928 1841 1.533625 CTCTCCATCTAGCTCTCCCG 58.466 60.000 0.00 0.00 0.00 5.14
961 1874 2.346541 CCTCGCTGAGCAGACTCCA 61.347 63.158 4.88 0.00 42.74 3.86
992 1905 3.952811 GCGAAGGCAGACGAAACT 58.047 55.556 0.00 0.00 39.62 2.66
1365 2278 1.227234 GGCGCCAACAGCTGTTTTT 60.227 52.632 29.23 6.53 40.39 1.94
1430 2344 3.303659 GCGGAATTTAGCATTCTGAGAGC 60.304 47.826 7.98 0.00 36.72 4.09
1436 2350 0.901124 AGCATTCTGAGAGCGGTCTT 59.099 50.000 19.66 2.15 30.97 3.01
1499 2413 8.904712 GCCAAATAATGTTTTCTTTTCAAATGC 58.095 29.630 0.00 0.00 0.00 3.56
1545 2469 4.284490 AGAGTTGGTCTGTATGAGCTGAAA 59.716 41.667 0.00 0.00 43.13 2.69
1547 2471 6.155221 AGAGTTGGTCTGTATGAGCTGAAATA 59.845 38.462 0.00 0.00 43.13 1.40
1600 2524 3.288092 TGGTACGCTATGACACTGAGAT 58.712 45.455 0.00 0.00 0.00 2.75
1601 2525 4.457466 TGGTACGCTATGACACTGAGATA 58.543 43.478 0.00 0.00 0.00 1.98
1602 2526 4.275196 TGGTACGCTATGACACTGAGATAC 59.725 45.833 0.00 0.00 0.00 2.24
1603 2527 4.515944 GGTACGCTATGACACTGAGATACT 59.484 45.833 0.00 0.00 0.00 2.12
1604 2528 4.822036 ACGCTATGACACTGAGATACTC 57.178 45.455 0.00 0.00 0.00 2.59
1605 2529 3.566322 ACGCTATGACACTGAGATACTCC 59.434 47.826 0.00 0.00 0.00 3.85
1606 2530 3.057876 CGCTATGACACTGAGATACTCCC 60.058 52.174 0.00 0.00 0.00 4.30
1607 2531 4.148838 GCTATGACACTGAGATACTCCCT 58.851 47.826 0.00 0.00 0.00 4.20
1608 2532 4.217550 GCTATGACACTGAGATACTCCCTC 59.782 50.000 0.00 0.00 0.00 4.30
1609 2533 3.019799 TGACACTGAGATACTCCCTCC 57.980 52.381 0.00 0.00 0.00 4.30
1610 2534 1.950909 GACACTGAGATACTCCCTCCG 59.049 57.143 0.00 0.00 0.00 4.63
1611 2535 1.285373 ACACTGAGATACTCCCTCCGT 59.715 52.381 0.00 0.00 0.00 4.69
1612 2536 1.950909 CACTGAGATACTCCCTCCGTC 59.049 57.143 0.00 0.00 0.00 4.79
1613 2537 1.133730 ACTGAGATACTCCCTCCGTCC 60.134 57.143 0.00 0.00 0.00 4.79
1614 2538 0.179026 TGAGATACTCCCTCCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
1615 2539 1.517210 GAGATACTCCCTCCGTCCGC 61.517 65.000 0.00 0.00 0.00 5.54
1616 2540 2.905807 GATACTCCCTCCGTCCGCG 61.906 68.421 0.00 0.00 37.95 6.46
1617 2541 3.411114 ATACTCCCTCCGTCCGCGA 62.411 63.158 8.23 0.00 41.33 5.87
1618 2542 2.898920 ATACTCCCTCCGTCCGCGAA 62.899 60.000 8.23 0.00 41.33 4.70
1619 2543 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
1620 2544 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
1621 2545 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
1622 2546 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
1623 2547 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
1624 2548 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
1625 2549 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
1626 2550 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
1627 2551 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
1628 2552 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
1629 2553 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
1630 2554 2.215587 CGTCCGCGAATAAGTGTACATG 59.784 50.000 8.23 0.00 41.33 3.21
1631 2555 3.184541 GTCCGCGAATAAGTGTACATGT 58.815 45.455 8.23 2.69 0.00 3.21
1632 2556 4.353737 GTCCGCGAATAAGTGTACATGTA 58.646 43.478 8.23 0.08 0.00 2.29
1633 2557 4.440103 GTCCGCGAATAAGTGTACATGTAG 59.560 45.833 8.23 0.00 0.00 2.74
1634 2558 3.181774 CCGCGAATAAGTGTACATGTAGC 59.818 47.826 8.23 2.52 0.00 3.58
1635 2559 4.042398 CGCGAATAAGTGTACATGTAGCT 58.958 43.478 5.62 4.96 0.00 3.32
1636 2560 4.503007 CGCGAATAAGTGTACATGTAGCTT 59.497 41.667 19.97 19.97 0.00 3.74
1637 2561 5.005394 CGCGAATAAGTGTACATGTAGCTTT 59.995 40.000 20.81 12.05 0.00 3.51
1638 2562 6.455113 CGCGAATAAGTGTACATGTAGCTTTT 60.455 38.462 20.81 13.85 0.00 2.27
1639 2563 6.682863 GCGAATAAGTGTACATGTAGCTTTTG 59.317 38.462 20.81 12.64 0.00 2.44
1640 2564 7.623506 GCGAATAAGTGTACATGTAGCTTTTGT 60.624 37.037 20.81 11.12 0.00 2.83
1641 2565 8.227791 CGAATAAGTGTACATGTAGCTTTTGTT 58.772 33.333 20.81 15.28 0.00 2.83
1642 2566 9.543018 GAATAAGTGTACATGTAGCTTTTGTTC 57.457 33.333 20.81 18.01 0.00 3.18
1643 2567 8.848474 ATAAGTGTACATGTAGCTTTTGTTCT 57.152 30.769 20.81 5.03 0.00 3.01
1644 2568 7.568199 AAGTGTACATGTAGCTTTTGTTCTT 57.432 32.000 5.62 0.00 0.00 2.52
1645 2569 8.671384 AAGTGTACATGTAGCTTTTGTTCTTA 57.329 30.769 5.62 0.00 0.00 2.10
1646 2570 8.671384 AGTGTACATGTAGCTTTTGTTCTTAA 57.329 30.769 5.62 0.00 0.00 1.85
1647 2571 8.774586 AGTGTACATGTAGCTTTTGTTCTTAAG 58.225 33.333 5.62 0.00 0.00 1.85
1648 2572 8.557029 GTGTACATGTAGCTTTTGTTCTTAAGT 58.443 33.333 5.62 0.00 0.00 2.24
1649 2573 8.770828 TGTACATGTAGCTTTTGTTCTTAAGTC 58.229 33.333 5.62 0.00 0.00 3.01
1650 2574 7.801716 ACATGTAGCTTTTGTTCTTAAGTCA 57.198 32.000 0.00 0.97 0.00 3.41
1651 2575 8.220755 ACATGTAGCTTTTGTTCTTAAGTCAA 57.779 30.769 0.00 7.00 0.00 3.18
1652 2576 8.682710 ACATGTAGCTTTTGTTCTTAAGTCAAA 58.317 29.630 17.55 17.55 0.00 2.69
1653 2577 9.173939 CATGTAGCTTTTGTTCTTAAGTCAAAG 57.826 33.333 19.22 15.25 33.61 2.77
1654 2578 8.276252 TGTAGCTTTTGTTCTTAAGTCAAAGT 57.724 30.769 19.22 14.09 33.61 2.66
1655 2579 8.736244 TGTAGCTTTTGTTCTTAAGTCAAAGTT 58.264 29.630 19.22 14.72 33.61 2.66
1656 2580 9.222916 GTAGCTTTTGTTCTTAAGTCAAAGTTC 57.777 33.333 19.22 14.81 33.61 3.01
1657 2581 8.056407 AGCTTTTGTTCTTAAGTCAAAGTTCT 57.944 30.769 19.22 15.96 33.61 3.01
1658 2582 9.174166 AGCTTTTGTTCTTAAGTCAAAGTTCTA 57.826 29.630 19.22 10.21 33.61 2.10
1659 2583 9.783256 GCTTTTGTTCTTAAGTCAAAGTTCTAA 57.217 29.630 19.22 9.77 33.61 2.10
1674 2598 9.936759 TCAAAGTTCTAAAATTTTGACCAACTT 57.063 25.926 13.76 15.94 42.62 2.66
1681 2605 8.856103 TCTAAAATTTTGACCAACTTTCTAGGG 58.144 33.333 13.76 0.00 0.00 3.53
1682 2606 7.669089 AAAATTTTGACCAACTTTCTAGGGA 57.331 32.000 1.75 0.00 0.00 4.20
1683 2607 7.669089 AAATTTTGACCAACTTTCTAGGGAA 57.331 32.000 0.00 0.00 0.00 3.97
1684 2608 7.669089 AATTTTGACCAACTTTCTAGGGAAA 57.331 32.000 0.00 0.00 38.90 3.13
1685 2609 7.669089 ATTTTGACCAACTTTCTAGGGAAAA 57.331 32.000 0.00 0.00 40.41 2.29
1686 2610 6.709018 TTTGACCAACTTTCTAGGGAAAAG 57.291 37.500 1.82 1.82 40.41 2.27
1687 2611 5.382664 TGACCAACTTTCTAGGGAAAAGT 57.617 39.130 2.94 2.94 40.41 2.66
1688 2612 6.503560 TGACCAACTTTCTAGGGAAAAGTA 57.496 37.500 8.10 0.00 40.41 2.24
1689 2613 6.531021 TGACCAACTTTCTAGGGAAAAGTAG 58.469 40.000 8.10 6.33 40.41 2.57
1690 2614 6.328148 TGACCAACTTTCTAGGGAAAAGTAGA 59.672 38.462 8.10 0.00 40.41 2.59
1691 2615 7.145474 ACCAACTTTCTAGGGAAAAGTAGAA 57.855 36.000 8.10 0.00 40.41 2.10
1692 2616 7.225011 ACCAACTTTCTAGGGAAAAGTAGAAG 58.775 38.462 8.10 2.37 40.41 2.85
1693 2617 7.147355 ACCAACTTTCTAGGGAAAAGTAGAAGT 60.147 37.037 8.10 2.83 40.41 3.01
1694 2618 8.373220 CCAACTTTCTAGGGAAAAGTAGAAGTA 58.627 37.037 8.10 0.00 40.41 2.24
1695 2619 9.945904 CAACTTTCTAGGGAAAAGTAGAAGTAT 57.054 33.333 8.10 0.00 40.41 2.12
1704 2628 9.833917 AGGGAAAAGTAGAAGTATTTATAGCAC 57.166 33.333 0.00 0.00 0.00 4.40
1705 2629 9.833917 GGGAAAAGTAGAAGTATTTATAGCACT 57.166 33.333 0.00 0.00 0.00 4.40
1726 2650 8.516234 AGCACTAAATTAGTATCACTAGATCCG 58.484 37.037 5.23 0.00 37.23 4.18
1727 2651 8.298140 GCACTAAATTAGTATCACTAGATCCGT 58.702 37.037 5.23 0.00 37.23 4.69
1736 2660 8.425577 AGTATCACTAGATCCGTTTTGAAATG 57.574 34.615 0.00 0.00 35.67 2.32
1737 2661 8.041323 AGTATCACTAGATCCGTTTTGAAATGT 58.959 33.333 0.00 0.00 35.67 2.71
1738 2662 9.309516 GTATCACTAGATCCGTTTTGAAATGTA 57.690 33.333 0.00 0.00 35.67 2.29
1739 2663 7.591006 TCACTAGATCCGTTTTGAAATGTAC 57.409 36.000 0.00 0.00 0.00 2.90
1740 2664 7.383687 TCACTAGATCCGTTTTGAAATGTACT 58.616 34.615 0.00 0.00 0.00 2.73
1741 2665 7.876068 TCACTAGATCCGTTTTGAAATGTACTT 59.124 33.333 0.00 0.00 0.00 2.24
1742 2666 8.504005 CACTAGATCCGTTTTGAAATGTACTTT 58.496 33.333 0.00 0.00 0.00 2.66
1743 2667 8.718734 ACTAGATCCGTTTTGAAATGTACTTTC 58.281 33.333 0.00 9.52 43.05 2.62
1799 2723 8.375493 ACTACTATTTTCTATGAAGTGGGTCA 57.625 34.615 0.00 0.00 0.00 4.02
1800 2724 8.822805 ACTACTATTTTCTATGAAGTGGGTCAA 58.177 33.333 0.00 0.00 0.00 3.18
1801 2725 9.667107 CTACTATTTTCTATGAAGTGGGTCAAA 57.333 33.333 0.00 0.00 0.00 2.69
1802 2726 8.934023 ACTATTTTCTATGAAGTGGGTCAAAA 57.066 30.769 0.00 0.00 0.00 2.44
1803 2727 9.533831 ACTATTTTCTATGAAGTGGGTCAAAAT 57.466 29.630 0.00 0.00 0.00 1.82
1836 2760 9.950680 TTTTTGACTAAGAACAAAAGCTAGATG 57.049 29.630 0.00 0.00 43.47 2.90
1837 2761 8.677148 TTTGACTAAGAACAAAAGCTAGATGT 57.323 30.769 0.00 0.00 33.90 3.06
1838 2762 9.772973 TTTGACTAAGAACAAAAGCTAGATGTA 57.227 29.630 0.00 0.00 33.90 2.29
1839 2763 8.758633 TGACTAAGAACAAAAGCTAGATGTAC 57.241 34.615 0.00 0.00 0.00 2.90
1840 2764 8.364894 TGACTAAGAACAAAAGCTAGATGTACA 58.635 33.333 0.00 0.00 0.00 2.90
1841 2765 8.535690 ACTAAGAACAAAAGCTAGATGTACAC 57.464 34.615 0.00 0.00 0.00 2.90
1842 2766 8.368668 ACTAAGAACAAAAGCTAGATGTACACT 58.631 33.333 0.00 0.13 0.00 3.55
1843 2767 9.209175 CTAAGAACAAAAGCTAGATGTACACTT 57.791 33.333 0.00 0.00 0.00 3.16
1845 2769 9.726438 AAGAACAAAAGCTAGATGTACACTTAT 57.274 29.630 0.00 0.00 0.00 1.73
1846 2770 9.726438 AGAACAAAAGCTAGATGTACACTTATT 57.274 29.630 0.00 0.00 0.00 1.40
1847 2771 9.974750 GAACAAAAGCTAGATGTACACTTATTC 57.025 33.333 0.00 0.00 0.00 1.75
1848 2772 9.502091 AACAAAAGCTAGATGTACACTTATTCA 57.498 29.630 0.00 0.00 0.00 2.57
1849 2773 8.936864 ACAAAAGCTAGATGTACACTTATTCAC 58.063 33.333 0.00 0.00 0.00 3.18
1850 2774 7.757097 AAAGCTAGATGTACACTTATTCACG 57.243 36.000 0.00 0.00 0.00 4.35
1851 2775 5.833082 AGCTAGATGTACACTTATTCACGG 58.167 41.667 0.00 0.00 0.00 4.94
1852 2776 5.593095 AGCTAGATGTACACTTATTCACGGA 59.407 40.000 0.00 0.00 0.00 4.69
1853 2777 5.686397 GCTAGATGTACACTTATTCACGGAC 59.314 44.000 0.00 0.00 0.00 4.79
1854 2778 5.654603 AGATGTACACTTATTCACGGACA 57.345 39.130 0.00 0.00 0.00 4.02
1855 2779 5.651530 AGATGTACACTTATTCACGGACAG 58.348 41.667 0.00 0.00 0.00 3.51
1856 2780 5.417894 AGATGTACACTTATTCACGGACAGA 59.582 40.000 0.00 0.00 0.00 3.41
1857 2781 5.055642 TGTACACTTATTCACGGACAGAG 57.944 43.478 0.00 0.00 0.00 3.35
1858 2782 3.594603 ACACTTATTCACGGACAGAGG 57.405 47.619 0.00 0.00 0.00 3.69
1859 2783 2.233922 ACACTTATTCACGGACAGAGGG 59.766 50.000 0.00 0.00 0.00 4.30
1860 2784 2.496070 CACTTATTCACGGACAGAGGGA 59.504 50.000 0.00 0.00 0.00 4.20
1861 2785 2.761208 ACTTATTCACGGACAGAGGGAG 59.239 50.000 0.00 0.00 0.00 4.30
1893 2817 7.348201 CGGAGAAATATCTGTGAAATGCTAAC 58.652 38.462 0.00 0.00 35.54 2.34
1895 2819 8.844244 GGAGAAATATCTGTGAAATGCTAACAT 58.156 33.333 0.00 0.00 35.54 2.71
1916 2840 5.413523 ACATTGTAAAATAACTCGGTGGTCC 59.586 40.000 0.00 0.00 0.00 4.46
1931 2855 0.170339 GGTCCCGTGCTATTGTTTGC 59.830 55.000 0.00 0.00 0.00 3.68
1935 2859 0.881118 CCGTGCTATTGTTTGCCTGT 59.119 50.000 0.00 0.00 0.00 4.00
1996 2920 4.574013 AGCTGTACTGTCTACCACGTATAC 59.426 45.833 1.46 0.00 0.00 1.47
2051 2977 5.699097 TTTACCTAATGAAACTGGCACAC 57.301 39.130 0.00 0.00 0.00 3.82
2174 3100 9.231297 CATCTTTAATCTGTTCAAAGTAAGGGA 57.769 33.333 0.00 0.00 32.36 4.20
2175 3101 9.807921 ATCTTTAATCTGTTCAAAGTAAGGGAA 57.192 29.630 0.00 0.00 32.36 3.97
2176 3102 9.807921 TCTTTAATCTGTTCAAAGTAAGGGAAT 57.192 29.630 0.00 0.00 32.36 3.01
2224 3150 8.587608 TGTATCTTTGGATCTGCATTTTTCTTT 58.412 29.630 0.00 0.00 33.71 2.52
2226 3152 8.913487 ATCTTTGGATCTGCATTTTTCTTTTT 57.087 26.923 0.00 0.00 0.00 1.94
2283 3209 3.959535 AACAATACCCAAACTGGCATG 57.040 42.857 0.00 0.00 35.79 4.06
2380 3306 2.208431 GCTGGTTCTGATGATCCGAAG 58.792 52.381 0.00 0.00 35.38 3.79
2744 3670 1.828595 TGCAACGGGATAGCTGTTCTA 59.171 47.619 0.00 0.00 0.00 2.10
2773 3699 9.701098 TTTTACTATGTTGTACCAGTTCTGTAG 57.299 33.333 0.00 0.00 0.00 2.74
2794 3720 7.558604 TGTAGTACTCCAGTTGTGTTTAAGTT 58.441 34.615 0.00 0.00 0.00 2.66
3055 3981 3.777106 TCCTCAGCTGTTGAAAGATGT 57.223 42.857 14.67 0.00 35.11 3.06
3125 4051 0.322975 AGAATGCTGCCTCGTCAAGT 59.677 50.000 0.00 0.00 0.00 3.16
3248 4174 2.297033 GCATGACAATGTCCACAAAGGT 59.703 45.455 11.24 0.00 36.08 3.50
3256 4182 5.165676 CAATGTCCACAAAGGTTCATCATG 58.834 41.667 0.00 0.00 39.02 3.07
3329 4255 6.116126 AGCAGCCACTTTAGTAAAGGATAAG 58.884 40.000 23.29 12.73 42.82 1.73
3452 4378 6.867662 ACCAAGTCTGACAACTCTAAATTG 57.132 37.500 10.88 2.50 0.00 2.32
3608 4534 4.013050 CAGGGAGGTTTCCATTTCTTCTC 58.987 47.826 0.00 0.00 45.98 2.87
3732 4658 2.677542 AACTTTCCCTTTCCTGACCC 57.322 50.000 0.00 0.00 0.00 4.46
3749 4675 5.069251 CCTGACCCGTTCTATAGAAGTCAAT 59.931 44.000 24.74 10.14 36.77 2.57
3804 4731 5.121611 GGGCTAAACATTTGCAATTTGTACC 59.878 40.000 13.95 12.63 0.00 3.34
3818 4745 2.053747 TGTACCCCTTCCCTTCACAT 57.946 50.000 0.00 0.00 0.00 3.21
3829 4756 5.658190 CCTTCCCTTCACATCCATATTTTGT 59.342 40.000 0.00 0.00 0.00 2.83
3941 4868 1.066002 CCAATGGGCATGTTCGCTTAG 59.934 52.381 0.00 0.00 0.00 2.18
3955 4882 1.163554 GCTTAGAAGTTGCAGCAGCT 58.836 50.000 5.82 5.82 42.74 4.24
4012 4944 5.649831 GGCCTAACATTCTTCAGTTTCTGAT 59.350 40.000 0.00 0.00 40.39 2.90
4082 5016 3.127721 GGCTACTGCTTTGTCTTCCATTC 59.872 47.826 0.00 0.00 39.59 2.67
4083 5017 4.006319 GCTACTGCTTTGTCTTCCATTCT 58.994 43.478 0.00 0.00 36.03 2.40
4106 5040 5.483811 TCTGTGACACACTGACACTTAAAA 58.516 37.500 3.56 0.00 42.09 1.52
4192 5131 7.255208 CCTTTCATGCTAAAATTGCCTGTTTTT 60.255 33.333 0.00 0.00 31.71 1.94
4488 5534 6.686630 TGTGCTGTTTTATATTTTCTGTGGG 58.313 36.000 0.00 0.00 0.00 4.61
4493 5539 8.682710 GCTGTTTTATATTTTCTGTGGGATGTA 58.317 33.333 0.00 0.00 0.00 2.29
4516 5562 2.999331 ACCATCATCGGGTTTTAGTGG 58.001 47.619 0.00 0.00 34.10 4.00
4564 5610 4.427312 CCTGTTTATGCCAAGATTGCTTC 58.573 43.478 0.00 0.00 30.14 3.86
4582 5629 5.063880 TGCTTCTTTCCTTGGTCTTTACTC 58.936 41.667 0.00 0.00 0.00 2.59
4584 5631 5.746361 GCTTCTTTCCTTGGTCTTTACTCCT 60.746 44.000 0.00 0.00 0.00 3.69
4620 5667 6.405278 TGTCTTACACTTGATCTCTGAACA 57.595 37.500 0.00 0.00 0.00 3.18
4701 5748 4.947388 TGTTCATATTTCCAGCCAAGTACC 59.053 41.667 0.00 0.00 0.00 3.34
4767 5814 6.024049 GCATTGCCTATAAGCATCGATTTAC 58.976 40.000 0.00 0.00 43.64 2.01
4856 5912 0.459899 TTGATATCGTGGCTCGCACT 59.540 50.000 3.73 0.00 39.67 4.40
4908 5964 2.309613 TCCTGAATTTGCTGTGCAGTT 58.690 42.857 0.00 0.00 40.61 3.16
4938 5994 1.211703 TGGTGGTTCTTCAGAGCACAA 59.788 47.619 8.44 0.00 44.88 3.33
4970 6026 0.246086 CTCTTCAGAGCGCCAAGACT 59.754 55.000 2.29 0.00 35.13 3.24
5026 6106 6.145338 AGTTCAGAACGTAAAGACAGAAGA 57.855 37.500 7.68 0.00 36.23 2.87
5035 6115 7.589958 ACGTAAAGACAGAAGATCTATGGAT 57.410 36.000 11.43 0.00 34.45 3.41
5236 6352 2.430921 CGGACGGTCACTGCAGAC 60.431 66.667 23.35 9.36 37.80 3.51
5683 6799 0.323629 CCGTGCCTCCAGAACCTTTA 59.676 55.000 0.00 0.00 0.00 1.85
5686 6802 1.064003 TGCCTCCAGAACCTTTAGCA 58.936 50.000 0.00 0.00 0.00 3.49
5977 7120 3.395941 CCAAGGAAAGGGAGTATAGGCAT 59.604 47.826 0.00 0.00 0.00 4.40
6026 7169 1.615392 GCAGTTCCAAGTCAAGGCATT 59.385 47.619 0.00 0.00 0.00 3.56
6050 7193 3.255888 GCATAGGGACGATCATCACTACA 59.744 47.826 2.24 0.00 37.42 2.74
6122 7265 4.099266 CCAAAAGGAAACACAAGGATGACA 59.901 41.667 0.00 0.00 0.00 3.58
6133 7276 4.869297 CACAAGGATGACAGAGATCTCAAC 59.131 45.833 24.39 14.52 0.00 3.18
6152 7295 1.869690 GAGCAAACTCTTGGCCGTC 59.130 57.895 0.00 0.00 40.03 4.79
6175 7318 3.680786 GCCTCCCAAAACACGCCC 61.681 66.667 0.00 0.00 0.00 6.13
6292 7435 3.506455 GGGCGATGCTATTAGAGACACTA 59.494 47.826 0.00 0.00 0.00 2.74
6365 7514 1.470890 TGGCGCCTTATTTGTTACAGC 59.529 47.619 29.70 0.00 0.00 4.40
6390 7539 5.402270 CCAGTTCCTTTATTTTGTTCAAGCG 59.598 40.000 0.00 0.00 0.00 4.68
6398 7548 7.010091 CCTTTATTTTGTTCAAGCGTTTGTCTT 59.990 33.333 11.93 0.00 35.73 3.01
6445 7595 1.939934 GTGGTCTGCATTTATAGCGCA 59.060 47.619 11.47 0.00 33.85 6.09
6447 7597 2.549329 TGGTCTGCATTTATAGCGCATG 59.451 45.455 11.47 5.06 34.63 4.06
6464 7615 4.742201 GCTTCCGTCTGCTGGCGA 62.742 66.667 19.76 2.43 0.00 5.54
6474 7625 0.882042 CTGCTGGCGAACACAGAAGT 60.882 55.000 0.00 0.00 36.94 3.01
6509 7662 6.875926 GCATGATTACTGCTAACCTTTTTG 57.124 37.500 0.00 0.00 36.68 2.44
6559 7716 8.428063 CCAAAATCTCTACTCCTAATGTCTCAT 58.572 37.037 0.00 0.00 0.00 2.90
6617 7786 3.411517 CCCCCACCAGGCGATCTT 61.412 66.667 0.00 0.00 0.00 2.40
7007 8201 2.936032 GTGCCCCTCTCCCAGGTT 60.936 66.667 0.00 0.00 41.51 3.50
7200 8394 0.247736 GGTGCATGAGTCCGACTTCT 59.752 55.000 1.71 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.047061 ACTGGTGCTGGAACTAGACAA 58.953 47.619 0.00 0.00 33.23 3.18
9 10 1.344763 ACACTGGTGCTGGAACTAGAC 59.655 52.381 0.00 0.00 33.23 2.59
13 14 4.885426 CACACTGGTGCTGGAACT 57.115 55.556 0.17 0.00 38.37 3.01
39 40 2.659063 CCGGTGAGGGATGTGCTGA 61.659 63.158 0.00 0.00 35.97 4.26
45 46 2.040544 GTGCAACCGGTGAGGGATG 61.041 63.158 8.52 1.66 46.96 3.51
46 47 2.351276 GTGCAACCGGTGAGGGAT 59.649 61.111 8.52 0.00 46.96 3.85
111 112 4.467082 TGCTGGAATTGGCAATATCACTTT 59.533 37.500 14.05 0.00 35.40 2.66
132 133 1.081242 CAGCACGGTCACCATTTGC 60.081 57.895 4.18 4.18 0.00 3.68
190 191 3.961414 ATGGGGCGAAACGGTGGT 61.961 61.111 0.00 0.00 0.00 4.16
242 243 0.374063 AGAGCTACGACGACGATGTG 59.626 55.000 15.32 2.15 42.66 3.21
243 244 0.374063 CAGAGCTACGACGACGATGT 59.626 55.000 15.32 1.54 42.66 3.06
249 250 2.691927 TCACTAACAGAGCTACGACGA 58.308 47.619 0.00 0.00 0.00 4.20
252 253 3.268330 ACGATCACTAACAGAGCTACGA 58.732 45.455 0.00 0.00 0.00 3.43
262 263 1.346365 TTGCTGCGACGATCACTAAC 58.654 50.000 0.00 0.00 0.00 2.34
294 296 4.134187 GTGCATGCGACGTGACGG 62.134 66.667 14.09 0.00 0.00 4.79
335 337 0.456653 ATGCAGAAAATCAACGCGGC 60.457 50.000 12.47 0.00 0.00 6.53
342 344 1.382522 GCGGAGGATGCAGAAAATCA 58.617 50.000 0.00 0.00 0.00 2.57
371 373 1.369839 TTGTCGCAGCGAACACCAAA 61.370 50.000 21.50 4.72 37.72 3.28
386 388 0.095417 GGCAGCGAGTCGATTTTGTC 59.905 55.000 18.61 6.18 0.00 3.18
387 389 2.162716 GGCAGCGAGTCGATTTTGT 58.837 52.632 18.61 0.00 0.00 2.83
447 449 1.982395 AACGATGGCCGACAGGAGA 60.982 57.895 0.00 0.00 41.76 3.71
454 456 3.418913 CGCAACAACGATGGCCGA 61.419 61.111 0.00 0.00 41.76 5.54
455 457 4.459331 CCGCAACAACGATGGCCG 62.459 66.667 0.00 0.00 45.44 6.13
458 460 2.176546 CTGCCGCAACAACGATGG 59.823 61.111 0.00 0.00 34.06 3.51
460 462 2.977456 TGCTGCCGCAACAACGAT 60.977 55.556 0.00 0.00 44.62 3.73
482 484 3.566210 CCCCACCACAACCTCCGT 61.566 66.667 0.00 0.00 0.00 4.69
506 508 4.403734 TCCATTTTCCACCACTACCTTTC 58.596 43.478 0.00 0.00 0.00 2.62
541 543 2.614983 TCGAACAACCTTTTCCTTTCGG 59.385 45.455 0.00 0.00 37.15 4.30
592 594 1.043673 GGGCCGGTCTCATAGTGACT 61.044 60.000 5.77 0.00 35.04 3.41
596 598 0.252197 GTTTGGGCCGGTCTCATAGT 59.748 55.000 5.77 0.00 0.00 2.12
598 600 1.760613 CTAGTTTGGGCCGGTCTCATA 59.239 52.381 5.77 0.00 0.00 2.15
599 601 0.541863 CTAGTTTGGGCCGGTCTCAT 59.458 55.000 5.77 0.00 0.00 2.90
625 627 1.893168 AAACATTTCGCGACGGACCG 61.893 55.000 9.15 13.61 0.00 4.79
626 628 0.236449 AAAACATTTCGCGACGGACC 59.764 50.000 9.15 0.00 0.00 4.46
627 629 1.587991 GAAAACATTTCGCGACGGAC 58.412 50.000 9.15 0.00 0.00 4.79
628 630 0.513820 GGAAAACATTTCGCGACGGA 59.486 50.000 9.15 0.00 0.00 4.69
629 631 0.515564 AGGAAAACATTTCGCGACGG 59.484 50.000 9.15 3.40 0.00 4.79
630 632 1.969256 CAAGGAAAACATTTCGCGACG 59.031 47.619 9.15 2.47 0.00 5.12
631 633 2.994849 ACAAGGAAAACATTTCGCGAC 58.005 42.857 9.15 0.00 0.00 5.19
632 634 4.815040 TTACAAGGAAAACATTTCGCGA 57.185 36.364 3.71 3.71 0.00 5.87
633 635 6.446659 AAATTACAAGGAAAACATTTCGCG 57.553 33.333 0.00 0.00 0.00 5.87
673 686 8.797266 ACTCAAACTTCAAAATTTTCGGTATC 57.203 30.769 0.00 0.00 0.00 2.24
675 688 8.989653 AAACTCAAACTTCAAAATTTTCGGTA 57.010 26.923 0.00 0.00 0.00 4.02
678 691 9.971744 ATCAAAACTCAAACTTCAAAATTTTCG 57.028 25.926 0.00 0.00 0.00 3.46
691 704 9.702726 GCCTTTTAGAAAAATCAAAACTCAAAC 57.297 29.630 0.00 0.00 0.00 2.93
697 710 6.921307 TCTCGGCCTTTTAGAAAAATCAAAAC 59.079 34.615 0.00 0.00 0.00 2.43
699 712 6.642707 TCTCGGCCTTTTAGAAAAATCAAA 57.357 33.333 0.00 0.00 0.00 2.69
700 713 6.127730 GGATCTCGGCCTTTTAGAAAAATCAA 60.128 38.462 0.00 0.00 0.00 2.57
701 714 5.357032 GGATCTCGGCCTTTTAGAAAAATCA 59.643 40.000 0.00 0.00 0.00 2.57
702 715 5.357032 TGGATCTCGGCCTTTTAGAAAAATC 59.643 40.000 0.00 0.00 0.00 2.17
703 716 5.261216 TGGATCTCGGCCTTTTAGAAAAAT 58.739 37.500 0.00 0.00 0.00 1.82
710 723 3.130340 GCATTTTGGATCTCGGCCTTTTA 59.870 43.478 0.00 0.00 0.00 1.52
736 749 2.041620 AGCTAGAGAGGGCTCATCTAGG 59.958 54.545 21.15 8.54 43.81 3.02
739 752 3.893753 TTAGCTAGAGAGGGCTCATCT 57.106 47.619 0.00 0.00 43.81 2.90
740 753 3.639094 TGTTTAGCTAGAGAGGGCTCATC 59.361 47.826 0.00 0.00 43.81 2.92
741 754 3.647636 TGTTTAGCTAGAGAGGGCTCAT 58.352 45.455 0.00 0.00 43.81 2.90
742 755 3.101643 TGTTTAGCTAGAGAGGGCTCA 57.898 47.619 0.00 0.00 43.81 4.26
743 756 4.473477 TTTGTTTAGCTAGAGAGGGCTC 57.527 45.455 0.00 0.00 41.62 4.70
744 757 4.141597 GGATTTGTTTAGCTAGAGAGGGCT 60.142 45.833 0.00 0.00 41.92 5.19
746 759 4.445019 GGGGATTTGTTTAGCTAGAGAGGG 60.445 50.000 0.00 0.00 0.00 4.30
747 760 4.445019 GGGGGATTTGTTTAGCTAGAGAGG 60.445 50.000 0.00 0.00 0.00 3.69
748 761 4.410555 AGGGGGATTTGTTTAGCTAGAGAG 59.589 45.833 0.00 0.00 0.00 3.20
750 763 4.779993 AGGGGGATTTGTTTAGCTAGAG 57.220 45.455 0.00 0.00 0.00 2.43
751 764 6.645884 TTTAGGGGGATTTGTTTAGCTAGA 57.354 37.500 0.00 0.00 0.00 2.43
776 789 8.710835 AACACGGAATTGATTTGTTTAGTTTT 57.289 26.923 0.00 0.00 0.00 2.43
777 790 7.166804 CGAACACGGAATTGATTTGTTTAGTTT 59.833 33.333 0.00 0.00 30.60 2.66
779 792 6.140110 CGAACACGGAATTGATTTGTTTAGT 58.860 36.000 0.00 0.00 30.60 2.24
835 1748 3.639561 ACCCAGTTTTACCTTTTCGCAAT 59.360 39.130 0.00 0.00 0.00 3.56
840 1753 4.202080 GGTGTGACCCAGTTTTACCTTTTC 60.202 45.833 0.00 0.00 30.04 2.29
904 1817 3.034924 AGCTAGATGGAGAGCTCGG 57.965 57.895 8.37 0.00 46.08 4.63
992 1905 0.322648 CTGCAGATCCATGGGCGATA 59.677 55.000 13.02 0.00 0.00 2.92
1168 2081 2.818274 GGAGTAGGCGCGGTTTGG 60.818 66.667 8.83 0.00 0.00 3.28
1368 2281 7.431084 CAGCGTCCAATTACATAAAAATGGTAC 59.569 37.037 0.00 0.00 32.56 3.34
1401 2314 6.678655 TCAGAATGCTAAATTCCGCAGAATTG 60.679 38.462 8.64 0.00 43.35 2.32
1404 2317 4.260985 TCAGAATGCTAAATTCCGCAGAA 58.739 39.130 7.54 0.00 39.82 3.02
1413 2326 3.133721 AGACCGCTCTCAGAATGCTAAAT 59.866 43.478 0.00 0.00 34.76 1.40
1430 2344 1.173913 GGTTCCATTTCCCAAGACCG 58.826 55.000 0.00 0.00 0.00 4.79
1436 2350 3.458118 AGATACGATGGTTCCATTTCCCA 59.542 43.478 5.77 0.00 0.00 4.37
1499 2413 3.017048 TCTGACAATAGCAAATGGGGG 57.983 47.619 0.00 0.00 0.00 5.40
1545 2469 1.492176 CTCCAACTGAGCCACCCATAT 59.508 52.381 0.00 0.00 33.47 1.78
1547 2471 1.136329 ACTCCAACTGAGCCACCCAT 61.136 55.000 0.00 0.00 45.61 4.00
1600 2524 2.898920 ATTCGCGGACGGAGGGAGTA 62.899 60.000 6.13 0.00 40.63 2.59
1601 2525 2.898920 TATTCGCGGACGGAGGGAGT 62.899 60.000 6.13 0.00 40.63 3.85
1602 2526 1.731433 TTATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
1603 2527 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
1604 2528 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
1605 2529 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
1606 2530 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
1607 2531 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
1608 2532 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
1609 2533 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
1610 2534 3.184541 ACATGTACACTTATTCGCGGAC 58.815 45.455 6.13 0.00 0.00 4.79
1611 2535 3.513680 ACATGTACACTTATTCGCGGA 57.486 42.857 6.13 0.00 0.00 5.54
1612 2536 3.181774 GCTACATGTACACTTATTCGCGG 59.818 47.826 6.13 0.00 0.00 6.46
1613 2537 4.042398 AGCTACATGTACACTTATTCGCG 58.958 43.478 0.00 0.00 0.00 5.87
1614 2538 5.968387 AAGCTACATGTACACTTATTCGC 57.032 39.130 12.59 7.10 0.00 4.70
1615 2539 7.739295 ACAAAAGCTACATGTACACTTATTCG 58.261 34.615 13.99 7.82 0.00 3.34
1616 2540 9.543018 GAACAAAAGCTACATGTACACTTATTC 57.457 33.333 13.99 13.53 0.00 1.75
1617 2541 9.284968 AGAACAAAAGCTACATGTACACTTATT 57.715 29.630 13.99 10.21 0.00 1.40
1618 2542 8.848474 AGAACAAAAGCTACATGTACACTTAT 57.152 30.769 13.99 5.40 0.00 1.73
1619 2543 8.671384 AAGAACAAAAGCTACATGTACACTTA 57.329 30.769 13.99 0.00 0.00 2.24
1620 2544 7.568199 AAGAACAAAAGCTACATGTACACTT 57.432 32.000 0.08 6.05 0.00 3.16
1621 2545 8.671384 TTAAGAACAAAAGCTACATGTACACT 57.329 30.769 0.08 0.00 0.00 3.55
1622 2546 8.557029 ACTTAAGAACAAAAGCTACATGTACAC 58.443 33.333 10.09 0.00 0.00 2.90
1623 2547 8.671384 ACTTAAGAACAAAAGCTACATGTACA 57.329 30.769 10.09 0.00 0.00 2.90
1624 2548 8.770828 TGACTTAAGAACAAAAGCTACATGTAC 58.229 33.333 10.09 0.00 0.00 2.90
1625 2549 8.896320 TGACTTAAGAACAAAAGCTACATGTA 57.104 30.769 10.09 5.25 0.00 2.29
1626 2550 7.801716 TGACTTAAGAACAAAAGCTACATGT 57.198 32.000 10.09 2.69 0.00 3.21
1627 2551 9.173939 CTTTGACTTAAGAACAAAAGCTACATG 57.826 33.333 22.05 0.00 34.03 3.21
1628 2552 8.903820 ACTTTGACTTAAGAACAAAAGCTACAT 58.096 29.630 22.05 6.32 34.03 2.29
1629 2553 8.276252 ACTTTGACTTAAGAACAAAAGCTACA 57.724 30.769 22.05 8.44 34.03 2.74
1630 2554 9.222916 GAACTTTGACTTAAGAACAAAAGCTAC 57.777 33.333 22.05 13.66 34.03 3.58
1631 2555 9.174166 AGAACTTTGACTTAAGAACAAAAGCTA 57.826 29.630 22.05 9.36 34.03 3.32
1632 2556 8.056407 AGAACTTTGACTTAAGAACAAAAGCT 57.944 30.769 22.05 17.94 34.03 3.74
1633 2557 9.783256 TTAGAACTTTGACTTAAGAACAAAAGC 57.217 29.630 22.05 16.81 34.03 3.51
1648 2572 9.936759 AAGTTGGTCAAAATTTTAGAACTTTGA 57.063 25.926 15.84 0.00 35.88 2.69
1655 2579 8.856103 CCCTAGAAAGTTGGTCAAAATTTTAGA 58.144 33.333 2.44 1.38 36.25 2.10
1656 2580 8.856103 TCCCTAGAAAGTTGGTCAAAATTTTAG 58.144 33.333 2.44 0.00 36.25 1.85
1657 2581 8.770010 TCCCTAGAAAGTTGGTCAAAATTTTA 57.230 30.769 2.44 0.00 36.25 1.52
1658 2582 7.669089 TCCCTAGAAAGTTGGTCAAAATTTT 57.331 32.000 0.00 0.00 36.25 1.82
1659 2583 7.669089 TTCCCTAGAAAGTTGGTCAAAATTT 57.331 32.000 0.00 0.00 38.69 1.82
1660 2584 7.669089 TTTCCCTAGAAAGTTGGTCAAAATT 57.331 32.000 0.00 0.00 37.07 1.82
1661 2585 7.344612 ACTTTTCCCTAGAAAGTTGGTCAAAAT 59.655 33.333 2.94 0.00 42.90 1.82
1662 2586 6.666113 ACTTTTCCCTAGAAAGTTGGTCAAAA 59.334 34.615 2.94 0.00 42.90 2.44
1663 2587 6.192044 ACTTTTCCCTAGAAAGTTGGTCAAA 58.808 36.000 2.94 0.00 42.90 2.69
1664 2588 5.762279 ACTTTTCCCTAGAAAGTTGGTCAA 58.238 37.500 2.94 0.00 42.90 3.18
1665 2589 5.382664 ACTTTTCCCTAGAAAGTTGGTCA 57.617 39.130 2.94 0.00 42.90 4.02
1666 2590 6.766429 TCTACTTTTCCCTAGAAAGTTGGTC 58.234 40.000 11.90 0.00 42.90 4.02
1667 2591 6.758806 TCTACTTTTCCCTAGAAAGTTGGT 57.241 37.500 11.90 0.00 42.90 3.67
1668 2592 7.225011 ACTTCTACTTTTCCCTAGAAAGTTGG 58.775 38.462 11.90 7.29 42.90 3.77
1669 2593 9.945904 ATACTTCTACTTTTCCCTAGAAAGTTG 57.054 33.333 11.90 10.50 42.90 3.16
1678 2602 9.833917 GTGCTATAAATACTTCTACTTTTCCCT 57.166 33.333 0.00 0.00 0.00 4.20
1679 2603 9.833917 AGTGCTATAAATACTTCTACTTTTCCC 57.166 33.333 0.00 0.00 0.00 3.97
1700 2624 8.516234 CGGATCTAGTGATACTAATTTAGTGCT 58.484 37.037 17.47 12.25 39.81 4.40
1701 2625 8.298140 ACGGATCTAGTGATACTAATTTAGTGC 58.702 37.037 17.47 10.62 39.81 4.40
1710 2634 9.529325 CATTTCAAAACGGATCTAGTGATACTA 57.471 33.333 0.00 0.00 31.34 1.82
1711 2635 8.041323 ACATTTCAAAACGGATCTAGTGATACT 58.959 33.333 0.00 0.00 31.34 2.12
1712 2636 8.197988 ACATTTCAAAACGGATCTAGTGATAC 57.802 34.615 0.00 0.00 32.19 2.24
1713 2637 9.309516 GTACATTTCAAAACGGATCTAGTGATA 57.690 33.333 0.00 0.00 32.19 2.15
1714 2638 8.041323 AGTACATTTCAAAACGGATCTAGTGAT 58.959 33.333 0.00 0.00 35.26 3.06
1715 2639 7.383687 AGTACATTTCAAAACGGATCTAGTGA 58.616 34.615 0.00 0.00 0.00 3.41
1716 2640 7.596749 AGTACATTTCAAAACGGATCTAGTG 57.403 36.000 0.00 0.00 0.00 2.74
1717 2641 8.617290 AAAGTACATTTCAAAACGGATCTAGT 57.383 30.769 0.00 0.00 0.00 2.57
1773 2697 9.483489 TGACCCACTTCATAGAAAATAGTAGTA 57.517 33.333 0.00 0.00 0.00 1.82
1774 2698 8.375493 TGACCCACTTCATAGAAAATAGTAGT 57.625 34.615 0.00 0.00 0.00 2.73
1775 2699 9.667107 TTTGACCCACTTCATAGAAAATAGTAG 57.333 33.333 0.00 0.00 0.00 2.57
1777 2701 8.934023 TTTTGACCCACTTCATAGAAAATAGT 57.066 30.769 0.00 0.00 0.00 2.12
1810 2734 9.950680 CATCTAGCTTTTGTTCTTAGTCAAAAA 57.049 29.630 14.32 4.92 41.06 1.94
1811 2735 9.120538 ACATCTAGCTTTTGTTCTTAGTCAAAA 57.879 29.630 0.00 13.38 39.93 2.44
1812 2736 8.677148 ACATCTAGCTTTTGTTCTTAGTCAAA 57.323 30.769 0.00 2.68 32.75 2.69
1813 2737 9.204570 GTACATCTAGCTTTTGTTCTTAGTCAA 57.795 33.333 0.00 0.00 0.00 3.18
1814 2738 8.364894 TGTACATCTAGCTTTTGTTCTTAGTCA 58.635 33.333 0.00 0.00 0.00 3.41
1815 2739 8.648968 GTGTACATCTAGCTTTTGTTCTTAGTC 58.351 37.037 0.00 0.00 0.00 2.59
1816 2740 8.368668 AGTGTACATCTAGCTTTTGTTCTTAGT 58.631 33.333 0.00 0.00 0.00 2.24
1817 2741 8.764524 AGTGTACATCTAGCTTTTGTTCTTAG 57.235 34.615 0.00 0.00 0.00 2.18
1819 2743 9.726438 ATAAGTGTACATCTAGCTTTTGTTCTT 57.274 29.630 0.00 3.25 0.00 2.52
1820 2744 9.726438 AATAAGTGTACATCTAGCTTTTGTTCT 57.274 29.630 0.00 0.00 0.00 3.01
1821 2745 9.974750 GAATAAGTGTACATCTAGCTTTTGTTC 57.025 33.333 0.00 0.63 0.00 3.18
1822 2746 9.502091 TGAATAAGTGTACATCTAGCTTTTGTT 57.498 29.630 0.00 0.00 0.00 2.83
1823 2747 8.936864 GTGAATAAGTGTACATCTAGCTTTTGT 58.063 33.333 0.00 0.00 0.00 2.83
1824 2748 8.110612 CGTGAATAAGTGTACATCTAGCTTTTG 58.889 37.037 0.00 0.00 0.00 2.44
1825 2749 7.277981 CCGTGAATAAGTGTACATCTAGCTTTT 59.722 37.037 0.00 0.00 0.00 2.27
1826 2750 6.757010 CCGTGAATAAGTGTACATCTAGCTTT 59.243 38.462 0.00 0.00 0.00 3.51
1827 2751 6.096423 TCCGTGAATAAGTGTACATCTAGCTT 59.904 38.462 0.00 0.00 0.00 3.74
1828 2752 5.593095 TCCGTGAATAAGTGTACATCTAGCT 59.407 40.000 0.00 0.00 0.00 3.32
1829 2753 5.686397 GTCCGTGAATAAGTGTACATCTAGC 59.314 44.000 0.00 0.00 0.00 3.42
1830 2754 6.792326 TGTCCGTGAATAAGTGTACATCTAG 58.208 40.000 0.00 0.00 0.00 2.43
1831 2755 6.600427 TCTGTCCGTGAATAAGTGTACATCTA 59.400 38.462 0.00 0.00 0.00 1.98
1832 2756 5.417894 TCTGTCCGTGAATAAGTGTACATCT 59.582 40.000 0.00 0.00 0.00 2.90
1833 2757 5.647589 TCTGTCCGTGAATAAGTGTACATC 58.352 41.667 0.00 0.00 0.00 3.06
1834 2758 5.394224 CCTCTGTCCGTGAATAAGTGTACAT 60.394 44.000 0.00 0.00 0.00 2.29
1835 2759 4.082408 CCTCTGTCCGTGAATAAGTGTACA 60.082 45.833 0.00 0.00 0.00 2.90
1836 2760 4.421948 CCTCTGTCCGTGAATAAGTGTAC 58.578 47.826 0.00 0.00 0.00 2.90
1837 2761 3.446161 CCCTCTGTCCGTGAATAAGTGTA 59.554 47.826 0.00 0.00 0.00 2.90
1838 2762 2.233922 CCCTCTGTCCGTGAATAAGTGT 59.766 50.000 0.00 0.00 0.00 3.55
1839 2763 2.496070 TCCCTCTGTCCGTGAATAAGTG 59.504 50.000 0.00 0.00 0.00 3.16
1840 2764 2.761208 CTCCCTCTGTCCGTGAATAAGT 59.239 50.000 0.00 0.00 0.00 2.24
1841 2765 2.761208 ACTCCCTCTGTCCGTGAATAAG 59.239 50.000 0.00 0.00 0.00 1.73
1842 2766 2.816411 ACTCCCTCTGTCCGTGAATAA 58.184 47.619 0.00 0.00 0.00 1.40
1843 2767 2.526888 ACTCCCTCTGTCCGTGAATA 57.473 50.000 0.00 0.00 0.00 1.75
1844 2768 2.526888 TACTCCCTCTGTCCGTGAAT 57.473 50.000 0.00 0.00 0.00 2.57
1845 2769 2.100197 CATACTCCCTCTGTCCGTGAA 58.900 52.381 0.00 0.00 0.00 3.18
1846 2770 1.005569 ACATACTCCCTCTGTCCGTGA 59.994 52.381 0.00 0.00 0.00 4.35
1847 2771 1.405821 GACATACTCCCTCTGTCCGTG 59.594 57.143 0.00 0.00 34.55 4.94
1848 2772 1.685491 GGACATACTCCCTCTGTCCGT 60.685 57.143 5.29 0.00 46.74 4.69
1849 2773 1.033574 GGACATACTCCCTCTGTCCG 58.966 60.000 5.29 0.00 46.74 4.79
1851 2775 1.033574 CCGGACATACTCCCTCTGTC 58.966 60.000 0.00 0.00 38.82 3.51
1852 2776 0.629596 TCCGGACATACTCCCTCTGT 59.370 55.000 0.00 0.00 35.21 3.41
1853 2777 1.133761 TCTCCGGACATACTCCCTCTG 60.134 57.143 0.00 0.00 35.21 3.35
1854 2778 1.223501 TCTCCGGACATACTCCCTCT 58.776 55.000 0.00 0.00 35.21 3.69
1855 2779 2.068834 TTCTCCGGACATACTCCCTC 57.931 55.000 0.00 0.00 35.21 4.30
1856 2780 2.544844 TTTCTCCGGACATACTCCCT 57.455 50.000 0.00 0.00 35.21 4.20
1857 2781 4.773149 AGATATTTCTCCGGACATACTCCC 59.227 45.833 0.00 0.00 35.21 4.30
1858 2782 5.244178 ACAGATATTTCTCCGGACATACTCC 59.756 44.000 0.00 0.00 35.33 3.85
1859 2783 6.016192 TCACAGATATTTCTCCGGACATACTC 60.016 42.308 0.00 0.00 0.00 2.59
1860 2784 5.833667 TCACAGATATTTCTCCGGACATACT 59.166 40.000 0.00 0.00 0.00 2.12
1861 2785 6.085555 TCACAGATATTTCTCCGGACATAC 57.914 41.667 0.00 0.00 0.00 2.39
1893 2817 5.163693 GGGACCACCGAGTTATTTTACAATG 60.164 44.000 0.00 0.00 36.97 2.82
1895 2819 4.325972 GGGACCACCGAGTTATTTTACAA 58.674 43.478 0.00 0.00 36.97 2.41
1916 2840 0.881118 ACAGGCAAACAATAGCACGG 59.119 50.000 0.00 0.00 0.00 4.94
1918 2842 4.497473 TGTTACAGGCAAACAATAGCAC 57.503 40.909 0.00 0.00 34.04 4.40
1931 2855 9.507280 CAGATGCAATATTAACTTTGTTACAGG 57.493 33.333 0.00 0.00 0.00 4.00
1935 2859 9.853555 CCAACAGATGCAATATTAACTTTGTTA 57.146 29.630 0.00 0.00 0.00 2.41
2018 2942 9.830975 AGTTTCATTAGGTAAAACTGCAAAATT 57.169 25.926 0.00 0.00 40.67 1.82
2051 2977 2.906897 ACCACTGCCTTTGCCACG 60.907 61.111 0.00 0.00 36.33 4.94
2062 2988 1.338200 GGAGTCCAACTAGCACCACTG 60.338 57.143 3.60 0.00 0.00 3.66
2104 3030 5.257082 TCCTTCCTGCAAACTTACAAAAC 57.743 39.130 0.00 0.00 0.00 2.43
2174 3100 7.609532 ACATCTCAGGAGAAATCGAAGAAAATT 59.390 33.333 2.68 0.00 40.15 1.82
2175 3101 7.108847 ACATCTCAGGAGAAATCGAAGAAAAT 58.891 34.615 2.68 0.00 40.15 1.82
2176 3102 6.467677 ACATCTCAGGAGAAATCGAAGAAAA 58.532 36.000 2.68 0.00 40.15 2.29
2224 3150 7.987458 AGACACAGAAACTAAGATTGAGTGAAA 59.013 33.333 0.00 0.00 0.00 2.69
2226 3152 7.055667 AGACACAGAAACTAAGATTGAGTGA 57.944 36.000 0.00 0.00 0.00 3.41
2283 3209 3.372060 CCGTTTCCTGCAGAAAGAAAAC 58.628 45.455 17.39 14.90 45.11 2.43
2380 3306 4.303282 GGCGATAAGAAGAGACTGAATCC 58.697 47.826 0.00 0.00 0.00 3.01
2757 3683 5.387788 TGGAGTACTACAGAACTGGTACAA 58.612 41.667 2.78 0.00 38.70 2.41
2794 3720 5.368145 AGAGCAGAAAATCGCAACCATATA 58.632 37.500 0.00 0.00 0.00 0.86
3055 3981 4.824479 TTATTGGTGTCAGCATCAGAGA 57.176 40.909 5.39 0.00 37.01 3.10
3125 4051 3.025978 CCCAAGCAATGATAAAGCTCCA 58.974 45.455 0.00 0.00 37.70 3.86
3329 4255 5.479027 TGGGTTCTTCTTGGTAAAAATAGGC 59.521 40.000 0.00 0.00 0.00 3.93
3338 4264 4.038642 GCAATTGTTGGGTTCTTCTTGGTA 59.961 41.667 7.40 0.00 0.00 3.25
3608 4534 3.506455 ACGAGTGATATGGATTAGACGGG 59.494 47.826 0.00 0.00 0.00 5.28
3708 4634 3.127030 GTCAGGAAAGGGAAAGTTATGCG 59.873 47.826 0.00 0.00 0.00 4.73
3804 4731 4.459852 AATATGGATGTGAAGGGAAGGG 57.540 45.455 0.00 0.00 0.00 3.95
3818 4745 8.956426 GTCAAATAGAACTCCACAAAATATGGA 58.044 33.333 0.00 0.00 44.20 3.41
3829 4756 9.349713 ACAAATGTTTAGTCAAATAGAACTCCA 57.650 29.630 0.00 0.00 0.00 3.86
4041 4973 1.428448 CGGACAAAAGCGAGTGATCA 58.572 50.000 0.00 0.00 0.00 2.92
4082 5016 2.879002 AGTGTCAGTGTGTCACAGAG 57.121 50.000 5.74 1.96 38.55 3.35
4083 5017 4.729227 TTAAGTGTCAGTGTGTCACAGA 57.271 40.909 5.74 0.00 38.55 3.41
4106 5040 5.117355 TCATTCTACAAGACGTCGAAACT 57.883 39.130 10.46 0.00 33.45 2.66
4192 5131 6.882610 AGACATCATGTGCACTTAAGAAAA 57.117 33.333 19.41 0.00 0.00 2.29
4486 5532 3.263425 ACCCGATGATGGTATTACATCCC 59.737 47.826 0.00 0.00 45.16 3.85
4488 5534 6.877611 AAAACCCGATGATGGTATTACATC 57.122 37.500 0.00 0.00 45.79 3.06
4493 5539 5.104277 TCCACTAAAACCCGATGATGGTATT 60.104 40.000 0.00 0.00 34.15 1.89
4564 5610 6.651225 CACTTAGGAGTAAAGACCAAGGAAAG 59.349 42.308 0.00 0.00 33.90 2.62
4582 5629 5.063944 GTGTAAGACATCATGTGCACTTAGG 59.936 44.000 19.41 7.53 33.71 2.69
4584 5631 5.793817 AGTGTAAGACATCATGTGCACTTA 58.206 37.500 19.41 2.56 32.84 2.24
4620 5667 6.213600 AGTGTCCACATAAGAACTTACCTGAT 59.786 38.462 0.00 0.00 0.00 2.90
4701 5748 8.018520 TGCAATACAGTTAAACCAAATACTTCG 58.981 33.333 0.00 0.00 0.00 3.79
4760 5807 9.171701 TGAAAATAACAAGAAAACCGTAAATCG 57.828 29.630 0.00 0.00 39.52 3.34
4856 5912 5.637006 AAGAGCGGTTACAATTTGCATTA 57.363 34.783 0.00 0.00 0.00 1.90
4908 5964 1.052124 AGAACCACCACGGGACTTGA 61.052 55.000 0.00 0.00 40.22 3.02
4970 6026 0.891373 CGCTCTGAAGAACTCCTCCA 59.109 55.000 0.00 0.00 0.00 3.86
5026 6106 7.238486 ACTTCTATCTTTGCGATCCATAGAT 57.762 36.000 15.79 15.79 42.48 1.98
5035 6115 5.864474 GTCTGAAGAACTTCTATCTTTGCGA 59.136 40.000 14.31 0.00 37.26 5.10
5086 6184 1.305930 CCTTGTTAGCACTTCCCCGC 61.306 60.000 0.00 0.00 0.00 6.13
5196 6312 0.786435 AAGTTCCTTCTTGGCCCCAT 59.214 50.000 0.00 0.00 35.26 4.00
5683 6799 1.002087 CTACCTTCCCGTTCAGTTGCT 59.998 52.381 0.00 0.00 0.00 3.91
5686 6802 1.275573 GAGCTACCTTCCCGTTCAGTT 59.724 52.381 0.00 0.00 0.00 3.16
5852 6995 9.457436 GTGTTTATAACTTTCCTCCTCCAAATA 57.543 33.333 0.00 0.00 0.00 1.40
5977 7120 4.829492 TCATCTTCCGAAGAGCTATGATCA 59.171 41.667 15.85 0.00 41.61 2.92
6026 7169 1.344438 GTGATGATCGTCCCTATGCCA 59.656 52.381 12.42 0.00 0.00 4.92
6050 7193 3.291584 TCCTATGCTCGTCATCTTCAGT 58.708 45.455 0.00 0.00 36.63 3.41
6122 7265 3.509575 AGAGTTTGCTCGTTGAGATCTCT 59.490 43.478 22.95 0.00 46.03 3.10
6133 7276 1.901650 GACGGCCAAGAGTTTGCTCG 61.902 60.000 2.24 0.00 46.03 5.03
6152 7295 0.961753 GTGTTTTGGGAGGCTTCAGG 59.038 55.000 0.00 0.00 0.00 3.86
6175 7318 1.153309 TGATCCATGCCTGTGCTCG 60.153 57.895 0.00 0.00 38.71 5.03
6305 7448 8.062065 TGATAGTACAGTGTTACATCACATCA 57.938 34.615 0.00 2.53 40.37 3.07
6365 7514 5.696270 GCTTGAACAAAATAAAGGAACTGGG 59.304 40.000 0.00 0.00 40.86 4.45
6390 7539 8.655970 GCAATGGGATATTTTAACAAGACAAAC 58.344 33.333 0.00 0.00 0.00 2.93
6398 7548 5.867903 CCAGGCAATGGGATATTTTAACA 57.132 39.130 0.00 0.00 46.36 2.41
6445 7595 2.437359 GCCAGCAGACGGAAGCAT 60.437 61.111 0.00 0.00 0.00 3.79
6447 7597 4.742201 TCGCCAGCAGACGGAAGC 62.742 66.667 0.00 0.00 0.00 3.86
6464 7615 9.212641 CATGCTATGCTATAATACTTCTGTGTT 57.787 33.333 0.00 0.00 0.00 3.32
6559 7716 5.276161 GGAAACGAACGAACAACTTACGTAA 60.276 40.000 7.94 7.94 39.31 3.18
7200 8394 1.906995 TGCCGATGCAGAGGATCAA 59.093 52.632 13.76 0.00 44.23 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.