Multiple sequence alignment - TraesCS3A01G256500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G256500 chr3A 100.000 6005 0 0 1 6005 478666109 478660105 0.000000e+00 11090
1 TraesCS3A01G256500 chr3D 94.565 4416 122 34 1 4356 359092762 359088405 0.000000e+00 6717
2 TraesCS3A01G256500 chr3D 91.471 938 49 9 4354 5284 359088282 359087369 0.000000e+00 1260
3 TraesCS3A01G256500 chr3D 88.451 381 35 4 5350 5729 359087316 359086944 9.180000e-123 451
4 TraesCS3A01G256500 chr3D 97.183 71 2 0 5282 5352 359087338 359087268 2.940000e-23 121
5 TraesCS3A01G256500 chr3B 93.978 4284 126 36 1 4217 465069150 465064932 0.000000e+00 6360
6 TraesCS3A01G256500 chr3B 90.901 1066 66 10 4315 5352 465064601 465063539 0.000000e+00 1402
7 TraesCS3A01G256500 chr3B 90.761 184 8 3 5350 5531 465063587 465063411 2.800000e-58 237
8 TraesCS3A01G256500 chr3B 96.512 86 3 0 4232 4317 465064797 465064712 6.270000e-30 143
9 TraesCS3A01G256500 chr5B 84.526 601 73 8 5 599 561693089 561693675 1.450000e-160 577
10 TraesCS3A01G256500 chr5B 89.381 113 11 1 5870 5982 538767022 538767133 2.260000e-29 141
11 TraesCS3A01G256500 chr5A 85.165 364 47 4 250 606 576340173 576340536 3.420000e-97 366
12 TraesCS3A01G256500 chr5A 86.567 134 16 2 5872 6005 1704870 1705001 4.850000e-31 147
13 TraesCS3A01G256500 chr7D 91.045 134 12 0 5872 6005 327489905 327490038 1.330000e-41 182
14 TraesCS3A01G256500 chr6D 90.299 134 13 0 5872 6005 467109393 467109260 6.190000e-40 176
15 TraesCS3A01G256500 chr2D 90.299 134 13 0 5872 6005 110048552 110048419 6.190000e-40 176
16 TraesCS3A01G256500 chr2D 85.821 134 19 0 5872 6005 535560919 535561052 6.270000e-30 143
17 TraesCS3A01G256500 chr2D 84.848 132 20 0 5872 6003 366972301 366972170 3.780000e-27 134
18 TraesCS3A01G256500 chr2D 87.273 110 13 1 5177 5285 592616214 592616323 2.270000e-24 124
19 TraesCS3A01G256500 chr7B 87.857 140 15 2 5866 6005 721710586 721710723 4.820000e-36 163
20 TraesCS3A01G256500 chr1D 86.466 133 18 0 5869 6001 282963695 282963827 4.850000e-31 147
21 TraesCS3A01G256500 chr1D 82.576 132 9 6 5154 5284 116866 116748 2.960000e-18 104
22 TraesCS3A01G256500 chrUn 76.892 251 51 6 5528 5774 40745381 40745134 1.050000e-27 135
23 TraesCS3A01G256500 chr6B 76.562 256 51 8 5525 5774 517461448 517461700 1.360000e-26 132
24 TraesCS3A01G256500 chr6B 76.096 251 54 6 5527 5774 582812070 582811823 6.320000e-25 126
25 TraesCS3A01G256500 chr2B 84.848 132 13 6 5155 5285 598969871 598969996 6.320000e-25 126
26 TraesCS3A01G256500 chr6A 87.129 101 13 0 5163 5263 597706608 597706708 1.370000e-21 115
27 TraesCS3A01G256500 chr4B 84.685 111 16 1 5154 5263 63120266 63120376 6.360000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G256500 chr3A 478660105 478666109 6004 True 11090.00 11090 100.0000 1 6005 1 chr3A.!!$R1 6004
1 TraesCS3A01G256500 chr3D 359086944 359092762 5818 True 2137.25 6717 92.9175 1 5729 4 chr3D.!!$R1 5728
2 TraesCS3A01G256500 chr3B 465063411 465069150 5739 True 2035.50 6360 93.0380 1 5531 4 chr3B.!!$R1 5530
3 TraesCS3A01G256500 chr5B 561693089 561693675 586 False 577.00 577 84.5260 5 599 1 chr5B.!!$F2 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 812 0.598562 GTGGTCTCTGCTGAGTTCGA 59.401 55.0 18.82 9.11 40.98 3.71 F
1549 1616 0.107831 TGTTTCCCAGTTCGTCAGGG 59.892 55.0 0.00 0.00 43.31 4.45 F
2310 2377 0.555769 TGCTCCTCAAAACCCCTTGT 59.444 50.0 0.00 0.00 0.00 3.16 F
2826 2893 0.693049 ATTCTCCGAACAACTGGCCT 59.307 50.0 3.32 0.00 0.00 5.19 F
4156 4233 0.518636 GTAAAACGAAACGGGCCTCC 59.481 55.0 0.84 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2548 2615 0.038343 GCGGCAACAATGTCACCATT 60.038 50.000 0.00 0.0 42.03 3.16 R
2904 2971 1.014044 TAGCGGTCAAGAAAGCAGCG 61.014 55.000 0.00 0.0 0.00 5.18 R
3558 3625 2.238521 GCAAAAGACTTCCACCATCCA 58.761 47.619 0.00 0.0 0.00 3.41 R
4804 5259 0.399454 CTGGACAGGGGCATGGATAG 59.601 60.000 0.00 0.0 0.00 2.08 R
5944 6434 0.034337 ACATGCGTGTCCGTTTAGGT 59.966 50.000 5.51 0.0 41.99 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 204 1.019278 CCTACACACGTCCCACATGC 61.019 60.000 0.00 0.00 0.00 4.06
213 214 0.604243 TCCCACATGCCACACGTAAC 60.604 55.000 0.00 0.00 0.00 2.50
224 225 6.243811 TGCCACACGTAACCTAAATTTTAG 57.756 37.500 8.88 8.88 0.00 1.85
231 232 5.232838 ACGTAACCTAAATTTTAGATCGCGG 59.767 40.000 16.13 3.60 0.00 6.46
243 244 4.545929 TCGCGGTCGATCCTAAGA 57.454 55.556 6.13 0.00 40.21 2.10
245 246 1.097232 TCGCGGTCGATCCTAAGAAA 58.903 50.000 6.13 0.00 40.21 2.52
247 248 2.094597 TCGCGGTCGATCCTAAGAAAAA 60.095 45.455 6.13 0.00 40.21 1.94
276 288 8.349983 ACACGATTTTGAGCTTTTAATTACACT 58.650 29.630 0.00 0.00 0.00 3.55
297 313 4.202419 ACTGACCTGTAGTTGGCATTGTAA 60.202 41.667 0.00 0.00 0.00 2.41
303 319 4.006989 TGTAGTTGGCATTGTAAGCGAAT 58.993 39.130 0.00 0.00 32.47 3.34
307 323 1.472082 TGGCATTGTAAGCGAATGTGG 59.528 47.619 0.00 0.00 33.96 4.17
468 484 2.375766 CGTCGTCTTGACCTGCTGC 61.376 63.158 0.00 0.00 45.23 5.25
507 526 3.782244 CAGGCAAGCACGACGAGC 61.782 66.667 9.38 9.38 0.00 5.03
537 565 1.522806 GTTGCGCCCCATCGTCATA 60.523 57.895 4.18 0.00 0.00 2.15
545 573 1.605753 CCCATCGTCATAGTCCTCGA 58.394 55.000 0.00 0.00 36.77 4.04
575 603 0.669077 CTATGGGAAGTCGTAGCGCT 59.331 55.000 17.26 17.26 0.00 5.92
621 649 1.413812 CACGACCCATGGATCAGATCA 59.586 52.381 15.22 0.00 0.00 2.92
622 650 1.690893 ACGACCCATGGATCAGATCAG 59.309 52.381 15.22 0.00 0.00 2.90
623 651 1.966354 CGACCCATGGATCAGATCAGA 59.034 52.381 15.22 0.00 0.00 3.27
624 652 2.288702 CGACCCATGGATCAGATCAGAC 60.289 54.545 15.22 0.00 0.00 3.51
625 653 2.038295 GACCCATGGATCAGATCAGACC 59.962 54.545 15.22 0.00 0.00 3.85
626 654 2.052468 CCCATGGATCAGATCAGACCA 58.948 52.381 15.22 10.34 35.09 4.02
627 655 2.038689 CCCATGGATCAGATCAGACCAG 59.961 54.545 15.22 7.08 34.08 4.00
656 684 4.202090 CGGTAGTAATCCTACACCAACTCC 60.202 50.000 2.31 0.00 46.68 3.85
674 702 1.343789 TCCACGTAAAATCCCACACGA 59.656 47.619 0.00 0.00 37.80 4.35
675 703 2.144730 CCACGTAAAATCCCACACGAA 58.855 47.619 0.00 0.00 37.80 3.85
676 704 2.096119 CCACGTAAAATCCCACACGAAC 60.096 50.000 0.00 0.00 37.80 3.95
677 705 2.803956 CACGTAAAATCCCACACGAACT 59.196 45.455 0.00 0.00 37.80 3.01
678 706 2.803956 ACGTAAAATCCCACACGAACTG 59.196 45.455 0.00 0.00 37.80 3.16
679 707 2.803956 CGTAAAATCCCACACGAACTGT 59.196 45.455 0.00 0.00 36.53 3.55
680 708 3.989167 CGTAAAATCCCACACGAACTGTA 59.011 43.478 0.00 0.00 36.53 2.74
681 709 4.448395 CGTAAAATCCCACACGAACTGTAA 59.552 41.667 0.00 0.00 36.53 2.41
682 710 5.389098 CGTAAAATCCCACACGAACTGTAAG 60.389 44.000 0.00 0.00 36.86 2.34
683 711 9.976056 ACGTAAAATCCCACACGAACTGTAAGT 62.976 40.741 0.00 0.00 43.16 2.24
729 757 2.728383 GTGACGTGACGTGACGGG 60.728 66.667 30.00 5.49 43.84 5.28
784 812 0.598562 GTGGTCTCTGCTGAGTTCGA 59.401 55.000 18.82 9.11 40.98 3.71
843 871 2.460853 CCCACACCCACTCCAACCT 61.461 63.158 0.00 0.00 0.00 3.50
1142 1170 4.444081 AGTCTCCCGCCCTACGCT 62.444 66.667 0.00 0.00 41.76 5.07
1149 1177 1.822613 CCGCCCTACGCTCTCTACA 60.823 63.158 0.00 0.00 41.76 2.74
1150 1178 1.355916 CGCCCTACGCTCTCTACAC 59.644 63.158 0.00 0.00 34.21 2.90
1223 1264 3.274288 CTGTAGCTGAGAACCCATTTCC 58.726 50.000 0.00 0.00 34.32 3.13
1240 1281 2.108566 CTGGAGCTCGAGCATGGG 59.891 66.667 36.87 20.49 45.16 4.00
1266 1307 2.443577 GTAGGACCCGACCCCTCC 60.444 72.222 0.00 0.00 34.11 4.30
1288 1329 1.069358 GGCTTCGATTAGTCCCTGGAG 59.931 57.143 0.00 0.00 0.00 3.86
1311 1352 1.427020 GAGATCGCTTGCTTGCCAC 59.573 57.895 0.00 0.00 0.00 5.01
1321 1362 2.180017 CTTGCCACGGCTGATTGC 59.820 61.111 9.92 0.00 42.51 3.56
1386 1427 3.371702 GGGGATTTAGTGAAAGGAGGTCC 60.372 52.174 0.00 0.00 0.00 4.46
1468 1533 1.734885 GCTTAACGCATGAGCAATCG 58.265 50.000 0.00 0.00 42.27 3.34
1480 1545 5.698832 CATGAGCAATCGTTAAGTTGGAAA 58.301 37.500 0.00 0.00 0.00 3.13
1481 1546 5.356882 TGAGCAATCGTTAAGTTGGAAAG 57.643 39.130 0.00 0.00 0.00 2.62
1549 1616 0.107831 TGTTTCCCAGTTCGTCAGGG 59.892 55.000 0.00 0.00 43.31 4.45
1550 1617 0.605589 GTTTCCCAGTTCGTCAGGGG 60.606 60.000 9.82 0.00 42.36 4.79
1616 1683 3.694072 CGAAACATGGAGCCATTTCCTTA 59.306 43.478 0.00 0.00 38.12 2.69
1713 1780 1.736032 GCAGTGAGTAAGCCTACACGG 60.736 57.143 0.00 0.00 38.15 4.94
1890 1957 6.625740 GCAATTGTGTTGCTATCTGTAACCAT 60.626 38.462 7.40 0.00 39.94 3.55
1990 2057 2.495366 TACACGCCGTGCTGGTAAGG 62.495 60.000 18.59 0.00 41.21 2.69
2007 2074 1.568504 AGGGTCGGAAGCTGATTGTA 58.431 50.000 0.00 0.00 0.00 2.41
2118 2185 0.674895 ATCAAGAACTCAGCCGGCAC 60.675 55.000 31.54 12.08 0.00 5.01
2157 2224 3.813596 CAGCATGGCTACCGGTTC 58.186 61.111 15.04 4.99 36.40 3.62
2160 2227 1.523938 GCATGGCTACCGGTTCTCC 60.524 63.158 15.04 12.59 0.00 3.71
2223 2290 1.470098 CAGCCACAGTTTAGCATGGTC 59.530 52.381 0.00 0.00 34.50 4.02
2283 2350 2.075338 GAAAGTGAGAGGCTGAAGCTG 58.925 52.381 0.00 0.00 41.70 4.24
2310 2377 0.555769 TGCTCCTCAAAACCCCTTGT 59.444 50.000 0.00 0.00 0.00 3.16
2814 2881 6.787085 AAACTGTTAGTTCTTGATTCTCCG 57.213 37.500 0.00 0.00 37.47 4.63
2826 2893 0.693049 ATTCTCCGAACAACTGGCCT 59.307 50.000 3.32 0.00 0.00 5.19
2898 2965 0.892814 GCCTTGCAGAACAGGAAGCT 60.893 55.000 6.34 0.00 35.85 3.74
2904 2971 5.163713 CCTTGCAGAACAGGAAGCTAATTAC 60.164 44.000 0.00 0.00 35.85 1.89
3300 3367 2.612672 CAGCCTGTGCAATGAGTATGAG 59.387 50.000 0.00 0.00 41.13 2.90
3383 3450 2.158449 GCATGAGCTCTGTGTACAACAC 59.842 50.000 16.19 3.24 42.77 3.32
3558 3625 8.699130 GGGAATCAAGATAATTTTGACATCCTT 58.301 33.333 16.78 1.73 40.39 3.36
3943 4012 5.216622 AGGTGAGTATATTGGGAGCAACTA 58.783 41.667 0.00 0.00 0.00 2.24
3977 4046 6.605471 ATTTTGTTTCTTTATCTCACCCCC 57.395 37.500 0.00 0.00 0.00 5.40
4035 4108 8.522830 CCATACCACTAATTCAACTTGAAATGT 58.477 33.333 8.28 5.26 40.12 2.71
4156 4233 0.518636 GTAAAACGAAACGGGCCTCC 59.481 55.000 0.84 0.00 0.00 4.30
4230 4307 7.066142 TGGTATTTGTATTGTATGGATTGCCT 58.934 34.615 0.00 0.00 34.31 4.75
4356 4671 3.684305 CGTGGTGAGCTCAAATTGATACA 59.316 43.478 20.19 4.90 0.00 2.29
4357 4672 4.154015 CGTGGTGAGCTCAAATTGATACAA 59.846 41.667 20.19 0.00 0.00 2.41
4358 4673 5.163723 CGTGGTGAGCTCAAATTGATACAAT 60.164 40.000 20.19 0.00 0.00 2.71
4359 4674 6.037062 CGTGGTGAGCTCAAATTGATACAATA 59.963 38.462 20.19 0.00 0.00 1.90
4360 4675 7.412853 GTGGTGAGCTCAAATTGATACAATAG 58.587 38.462 20.19 0.00 0.00 1.73
4610 5065 0.608130 CATCCGGAGTGACACCAAGA 59.392 55.000 11.34 0.00 0.00 3.02
4638 5093 1.131638 TGTGGCTCTGTTTCTCCTGT 58.868 50.000 0.00 0.00 0.00 4.00
4654 5109 7.765695 TTCTCCTGTTAGCTTGAAATTTCAT 57.234 32.000 21.10 9.60 37.00 2.57
4718 5173 6.069331 ACTTTCTCGAGCCACCTAGATTATA 58.931 40.000 7.81 0.00 0.00 0.98
4719 5174 6.722129 ACTTTCTCGAGCCACCTAGATTATAT 59.278 38.462 7.81 0.00 0.00 0.86
4720 5175 7.889073 ACTTTCTCGAGCCACCTAGATTATATA 59.111 37.037 7.81 0.00 0.00 0.86
4722 5177 8.645814 TTCTCGAGCCACCTAGATTATATAAA 57.354 34.615 7.81 0.00 0.00 1.40
4723 5178 8.645814 TCTCGAGCCACCTAGATTATATAAAA 57.354 34.615 7.81 0.00 0.00 1.52
4724 5179 8.740906 TCTCGAGCCACCTAGATTATATAAAAG 58.259 37.037 7.81 0.00 0.00 2.27
4729 5184 8.097662 AGCCACCTAGATTATATAAAAGCTGAC 58.902 37.037 0.00 0.00 0.00 3.51
4730 5185 7.334671 GCCACCTAGATTATATAAAAGCTGACC 59.665 40.741 0.00 0.00 0.00 4.02
4752 5207 4.082787 CCAATTTGACTTGTCCGCAGTTAT 60.083 41.667 0.00 0.00 0.00 1.89
4804 5259 2.213499 CGGAGGTACAAGAATGGCATC 58.787 52.381 0.00 0.00 0.00 3.91
4823 5278 0.399454 CTATCCATGCCCCTGTCCAG 59.601 60.000 0.00 0.00 0.00 3.86
4973 5428 2.346803 GTCGGTGTAATGTGACTGCAT 58.653 47.619 0.00 0.00 0.00 3.96
4993 5448 3.695830 TTCTTGACTGGGTGTGTATCC 57.304 47.619 0.00 0.00 0.00 2.59
5114 5570 1.203001 TGCCAAAACTTAGGACCCTGG 60.203 52.381 0.00 0.00 0.00 4.45
5222 5678 8.411318 AGTTTATTTTTGACAGAAACTTGCTG 57.589 30.769 0.00 0.00 37.09 4.41
5231 5687 2.357009 CAGAAACTTGCTGTCTGTTGCT 59.643 45.455 0.00 0.00 35.17 3.91
5250 5706 2.224018 GCTGGAATTTGTCAACCTTGCA 60.224 45.455 0.00 0.00 0.00 4.08
5321 5810 2.342179 GTGAGCTCTACAAAGCACCTC 58.658 52.381 16.19 0.00 45.00 3.85
5322 5811 1.970640 TGAGCTCTACAAAGCACCTCA 59.029 47.619 16.19 0.00 45.00 3.86
5323 5812 2.368548 TGAGCTCTACAAAGCACCTCAA 59.631 45.455 16.19 0.00 45.00 3.02
5324 5813 3.008375 TGAGCTCTACAAAGCACCTCAAT 59.992 43.478 16.19 0.00 45.00 2.57
5325 5814 3.604582 AGCTCTACAAAGCACCTCAATC 58.395 45.455 0.00 0.00 45.00 2.67
5326 5815 2.349886 GCTCTACAAAGCACCTCAATCG 59.650 50.000 0.00 0.00 42.05 3.34
5327 5816 3.589988 CTCTACAAAGCACCTCAATCGT 58.410 45.455 0.00 0.00 0.00 3.73
5328 5817 4.744570 CTCTACAAAGCACCTCAATCGTA 58.255 43.478 0.00 0.00 0.00 3.43
5329 5818 4.744570 TCTACAAAGCACCTCAATCGTAG 58.255 43.478 0.00 0.00 0.00 3.51
5330 5819 2.076863 ACAAAGCACCTCAATCGTAGC 58.923 47.619 0.00 0.00 0.00 3.58
5331 5820 1.398390 CAAAGCACCTCAATCGTAGCC 59.602 52.381 0.00 0.00 0.00 3.93
5332 5821 0.613260 AAGCACCTCAATCGTAGCCA 59.387 50.000 0.00 0.00 0.00 4.75
5333 5822 0.176680 AGCACCTCAATCGTAGCCAG 59.823 55.000 0.00 0.00 0.00 4.85
5334 5823 0.175760 GCACCTCAATCGTAGCCAGA 59.824 55.000 0.00 0.00 0.00 3.86
5335 5824 1.804372 GCACCTCAATCGTAGCCAGAG 60.804 57.143 0.00 0.00 0.00 3.35
5336 5825 1.478510 CACCTCAATCGTAGCCAGAGT 59.521 52.381 0.00 0.00 0.00 3.24
5337 5826 2.688446 CACCTCAATCGTAGCCAGAGTA 59.312 50.000 0.00 0.00 0.00 2.59
5338 5827 2.952978 ACCTCAATCGTAGCCAGAGTAG 59.047 50.000 0.00 0.00 0.00 2.57
5339 5828 2.294791 CCTCAATCGTAGCCAGAGTAGG 59.705 54.545 0.00 0.00 0.00 3.18
5340 5829 2.294791 CTCAATCGTAGCCAGAGTAGGG 59.705 54.545 0.00 0.00 0.00 3.53
5341 5830 2.032620 CAATCGTAGCCAGAGTAGGGT 58.967 52.381 0.00 0.00 43.00 4.34
5342 5831 2.431057 CAATCGTAGCCAGAGTAGGGTT 59.569 50.000 0.00 0.00 40.47 4.11
5343 5832 1.471119 TCGTAGCCAGAGTAGGGTTG 58.529 55.000 0.00 0.00 40.47 3.77
5344 5833 0.460311 CGTAGCCAGAGTAGGGTTGG 59.540 60.000 0.00 0.00 40.47 3.77
5349 5838 1.826385 CCAGAGTAGGGTTGGCAAAG 58.174 55.000 0.00 0.00 0.00 2.77
5350 5839 1.351017 CCAGAGTAGGGTTGGCAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
5351 5840 2.616510 CCAGAGTAGGGTTGGCAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
5352 5841 1.003696 AGAGTAGGGTTGGCAAAGAGC 59.996 52.381 0.00 0.00 44.65 4.09
5353 5842 1.003696 GAGTAGGGTTGGCAAAGAGCT 59.996 52.381 0.00 0.00 44.79 4.09
5354 5843 1.003696 AGTAGGGTTGGCAAAGAGCTC 59.996 52.381 5.27 5.27 44.79 4.09
5355 5844 1.003696 GTAGGGTTGGCAAAGAGCTCT 59.996 52.381 11.45 11.45 44.79 4.09
5356 5845 1.362224 AGGGTTGGCAAAGAGCTCTA 58.638 50.000 18.59 0.00 44.79 2.43
5357 5846 1.003696 AGGGTTGGCAAAGAGCTCTAC 59.996 52.381 18.59 10.17 44.79 2.59
5358 5847 1.271379 GGGTTGGCAAAGAGCTCTACA 60.271 52.381 18.59 11.20 44.79 2.74
5359 5848 2.504367 GGTTGGCAAAGAGCTCTACAA 58.496 47.619 18.59 16.33 44.79 2.41
5360 5849 2.884639 GGTTGGCAAAGAGCTCTACAAA 59.115 45.455 18.59 6.85 44.79 2.83
5361 5850 3.057946 GGTTGGCAAAGAGCTCTACAAAG 60.058 47.826 18.59 6.55 44.79 2.77
5362 5851 2.154462 TGGCAAAGAGCTCTACAAAGC 58.846 47.619 18.59 15.65 44.79 3.51
5363 5852 2.154462 GGCAAAGAGCTCTACAAAGCA 58.846 47.619 18.59 0.00 45.00 3.91
5364 5853 2.095516 GGCAAAGAGCTCTACAAAGCAC 60.096 50.000 18.59 7.40 45.00 4.40
5365 5854 2.095516 GCAAAGAGCTCTACAAAGCACC 60.096 50.000 18.59 0.00 45.00 5.01
5366 5855 3.406764 CAAAGAGCTCTACAAAGCACCT 58.593 45.455 18.59 0.00 45.00 4.00
5394 5883 3.558674 CCAGAGTAGGGTTGGCAAG 57.441 57.895 0.00 0.00 0.00 4.01
5429 5919 5.362717 TGTTCACCTCAAGAGTCAAGACTTA 59.637 40.000 3.96 0.00 42.66 2.24
5553 6043 6.571588 CAAAAACGACAAATATGACTTGTGC 58.428 36.000 0.00 0.00 37.14 4.57
5573 6063 4.975502 GTGCTCGAAATCAATTCACAAACA 59.024 37.500 0.00 0.00 37.96 2.83
5577 6067 6.583806 GCTCGAAATCAATTCACAAACAGAAT 59.416 34.615 0.00 0.00 37.96 2.40
5578 6068 7.115378 GCTCGAAATCAATTCACAAACAGAATT 59.885 33.333 0.00 0.00 44.21 2.17
5606 6096 2.062971 TTAATCGCTCCGTAGACCCT 57.937 50.000 0.00 0.00 0.00 4.34
5607 6097 2.062971 TAATCGCTCCGTAGACCCTT 57.937 50.000 0.00 0.00 0.00 3.95
5608 6098 1.192428 AATCGCTCCGTAGACCCTTT 58.808 50.000 0.00 0.00 0.00 3.11
5609 6099 0.745468 ATCGCTCCGTAGACCCTTTC 59.255 55.000 0.00 0.00 0.00 2.62
5610 6100 1.226603 CGCTCCGTAGACCCTTTCG 60.227 63.158 0.00 0.00 0.00 3.46
5627 6117 4.023173 GTGTAACGCCCGATAGCC 57.977 61.111 0.00 0.00 0.00 3.93
5650 6140 1.578926 GCCACGCTACATTGTGCAA 59.421 52.632 0.00 0.00 34.77 4.08
5653 6143 0.234625 CACGCTACATTGTGCAACGT 59.765 50.000 0.00 1.34 42.39 3.99
5668 6158 0.042794 AACGTTTGACTAACACGCGC 60.043 50.000 5.73 0.00 36.50 6.86
5673 6163 2.357327 TTGACTAACACGCGCTACAT 57.643 45.000 5.73 0.00 0.00 2.29
5674 6164 3.490800 TTGACTAACACGCGCTACATA 57.509 42.857 5.73 0.00 0.00 2.29
5678 6168 2.117137 CTAACACGCGCTACATACCTG 58.883 52.381 5.73 0.00 0.00 4.00
5681 6171 2.661866 CGCGCTACATACCTGGCC 60.662 66.667 5.56 0.00 0.00 5.36
5683 6173 1.071471 GCGCTACATACCTGGCCAT 59.929 57.895 5.51 0.00 0.00 4.40
5691 6181 1.131638 ATACCTGGCCATCGTCACAT 58.868 50.000 5.51 0.00 0.00 3.21
5693 6183 1.524621 CCTGGCCATCGTCACATCC 60.525 63.158 5.51 0.00 0.00 3.51
5702 6192 1.103803 TCGTCACATCCTAGACTGCC 58.896 55.000 0.00 0.00 32.68 4.85
5718 6208 4.829492 AGACTGCCTGAAAATTGCTAAGTT 59.171 37.500 0.00 0.00 0.00 2.66
5729 6219 3.870723 TTGCTAAGTTAGTGTGCAACG 57.129 42.857 11.51 0.00 42.39 4.10
5738 6228 1.082496 GTGTGCAACGCTTGAGAGC 60.082 57.895 0.00 0.00 45.72 4.09
5739 6229 1.227645 TGTGCAACGCTTGAGAGCT 60.228 52.632 0.00 0.00 46.96 4.09
5740 6230 1.206072 GTGCAACGCTTGAGAGCTG 59.794 57.895 0.00 0.00 46.96 4.24
5741 6231 1.962822 TGCAACGCTTGAGAGCTGG 60.963 57.895 0.00 0.00 46.96 4.85
5742 6232 2.684843 GCAACGCTTGAGAGCTGGG 61.685 63.158 0.00 0.00 46.96 4.45
5743 6233 2.359230 AACGCTTGAGAGCTGGGC 60.359 61.111 0.00 0.00 46.96 5.36
5744 6234 4.749310 ACGCTTGAGAGCTGGGCG 62.749 66.667 0.00 2.05 46.96 6.13
5757 6247 3.152261 GCTGGGCGCTACACTATATAG 57.848 52.381 7.64 8.27 35.14 1.31
5758 6248 2.492484 GCTGGGCGCTACACTATATAGT 59.508 50.000 9.71 9.71 34.31 2.12
5759 6249 3.673594 GCTGGGCGCTACACTATATAGTG 60.674 52.174 32.20 32.20 46.07 2.74
5771 6261 6.197364 CACTATATAGTGTAGTGCCTAGGC 57.803 45.833 27.86 27.71 46.51 3.93
5772 6262 5.710567 CACTATATAGTGTAGTGCCTAGGCA 59.289 44.000 32.88 32.88 46.78 4.75
5773 6263 6.494952 ACTATATAGTGTAGTGCCTAGGCAT 58.505 40.000 37.86 26.81 43.44 4.40
5774 6264 6.954684 ACTATATAGTGTAGTGCCTAGGCATT 59.045 38.462 37.86 34.49 43.44 3.56
5775 6265 7.093727 ACTATATAGTGTAGTGCCTAGGCATTG 60.094 40.741 37.86 20.38 43.44 2.82
5782 6272 3.788672 GCCTAGGCATTGCACTAGT 57.211 52.632 29.33 0.00 41.49 2.57
5783 6273 1.303309 GCCTAGGCATTGCACTAGTG 58.697 55.000 29.33 18.93 41.49 2.74
5784 6274 1.407437 GCCTAGGCATTGCACTAGTGT 60.407 52.381 29.33 5.00 41.49 3.55
5785 6275 2.555199 CCTAGGCATTGCACTAGTGTC 58.445 52.381 23.44 15.87 35.93 3.67
5786 6276 2.169352 CCTAGGCATTGCACTAGTGTCT 59.831 50.000 23.44 7.17 35.93 3.41
5787 6277 2.105006 AGGCATTGCACTAGTGTCTG 57.895 50.000 23.44 17.82 28.88 3.51
5788 6278 0.449388 GGCATTGCACTAGTGTCTGC 59.551 55.000 25.43 25.43 33.68 4.26
5789 6279 1.446907 GCATTGCACTAGTGTCTGCT 58.553 50.000 25.80 8.63 34.29 4.24
5790 6280 1.808945 GCATTGCACTAGTGTCTGCTT 59.191 47.619 25.80 7.68 34.29 3.91
5791 6281 2.159599 GCATTGCACTAGTGTCTGCTTC 60.160 50.000 25.80 11.46 34.29 3.86
5792 6282 2.908688 TTGCACTAGTGTCTGCTTCA 57.091 45.000 23.44 8.69 34.29 3.02
5793 6283 3.407424 TTGCACTAGTGTCTGCTTCAT 57.593 42.857 23.44 0.00 34.29 2.57
5794 6284 2.964740 TGCACTAGTGTCTGCTTCATC 58.035 47.619 23.44 4.01 34.29 2.92
5795 6285 2.564504 TGCACTAGTGTCTGCTTCATCT 59.435 45.455 23.44 0.00 34.29 2.90
5796 6286 3.007290 TGCACTAGTGTCTGCTTCATCTT 59.993 43.478 23.44 0.00 34.29 2.40
5797 6287 3.370366 GCACTAGTGTCTGCTTCATCTTG 59.630 47.826 23.44 0.00 0.00 3.02
5798 6288 4.564041 CACTAGTGTCTGCTTCATCTTGT 58.436 43.478 15.06 0.00 0.00 3.16
5799 6289 5.714047 CACTAGTGTCTGCTTCATCTTGTA 58.286 41.667 15.06 0.00 0.00 2.41
5800 6290 5.804473 CACTAGTGTCTGCTTCATCTTGTAG 59.196 44.000 15.06 0.00 0.00 2.74
5801 6291 4.881019 AGTGTCTGCTTCATCTTGTAGT 57.119 40.909 0.00 0.00 0.00 2.73
5802 6292 4.564041 AGTGTCTGCTTCATCTTGTAGTG 58.436 43.478 0.00 0.00 0.00 2.74
5803 6293 3.681897 GTGTCTGCTTCATCTTGTAGTGG 59.318 47.826 0.00 0.00 0.00 4.00
5804 6294 2.675348 GTCTGCTTCATCTTGTAGTGGC 59.325 50.000 0.00 0.00 0.00 5.01
5805 6295 2.302733 TCTGCTTCATCTTGTAGTGGCA 59.697 45.455 0.00 0.00 0.00 4.92
5806 6296 3.076621 CTGCTTCATCTTGTAGTGGCAA 58.923 45.455 0.00 0.00 0.00 4.52
5807 6297 3.485394 TGCTTCATCTTGTAGTGGCAAA 58.515 40.909 0.00 0.00 0.00 3.68
5808 6298 4.081406 TGCTTCATCTTGTAGTGGCAAAT 58.919 39.130 0.00 0.00 0.00 2.32
5809 6299 5.252547 TGCTTCATCTTGTAGTGGCAAATA 58.747 37.500 0.00 0.00 0.00 1.40
5810 6300 5.355071 TGCTTCATCTTGTAGTGGCAAATAG 59.645 40.000 0.00 0.00 0.00 1.73
5811 6301 5.355350 GCTTCATCTTGTAGTGGCAAATAGT 59.645 40.000 0.00 0.00 0.00 2.12
5812 6302 6.676456 GCTTCATCTTGTAGTGGCAAATAGTG 60.676 42.308 0.00 0.00 0.00 2.74
5813 6303 5.804639 TCATCTTGTAGTGGCAAATAGTGT 58.195 37.500 0.00 0.00 0.00 3.55
5814 6304 6.941857 TCATCTTGTAGTGGCAAATAGTGTA 58.058 36.000 0.00 0.00 0.00 2.90
5815 6305 7.041721 TCATCTTGTAGTGGCAAATAGTGTAG 58.958 38.462 0.00 0.00 0.00 2.74
5816 6306 5.175859 TCTTGTAGTGGCAAATAGTGTAGC 58.824 41.667 0.00 0.00 0.00 3.58
5833 6323 2.104331 CCACTAGGCGCTACACCG 59.896 66.667 7.64 0.00 0.00 4.94
5834 6324 2.707849 CCACTAGGCGCTACACCGT 61.708 63.158 7.64 0.00 0.00 4.83
5835 6325 1.378882 CCACTAGGCGCTACACCGTA 61.379 60.000 7.64 0.00 0.00 4.02
5836 6326 0.666913 CACTAGGCGCTACACCGTAT 59.333 55.000 7.64 0.00 0.00 3.06
5837 6327 1.875514 CACTAGGCGCTACACCGTATA 59.124 52.381 7.64 0.00 0.00 1.47
5838 6328 2.095869 CACTAGGCGCTACACCGTATAG 60.096 54.545 7.64 0.00 0.00 1.31
5839 6329 2.149578 CTAGGCGCTACACCGTATAGT 58.850 52.381 7.64 0.00 0.00 2.12
5840 6330 0.666913 AGGCGCTACACCGTATAGTG 59.333 55.000 7.64 0.00 43.65 2.74
5841 6331 2.503256 GCGCTACACCGTATAGTGC 58.497 57.895 6.62 6.62 45.83 4.40
5842 6332 3.930400 CGCTACACCGTATAGTGCA 57.070 52.632 0.00 0.00 41.67 4.57
5843 6333 1.755161 CGCTACACCGTATAGTGCAG 58.245 55.000 0.00 0.00 41.67 4.41
5844 6334 1.488527 GCTACACCGTATAGTGCAGC 58.511 55.000 1.45 1.45 46.73 5.25
5845 6335 2.863401 CTACACCGTATAGTGCAGCA 57.137 50.000 0.00 0.00 41.67 4.41
5846 6336 2.460918 CTACACCGTATAGTGCAGCAC 58.539 52.381 18.55 18.55 41.67 4.40
5847 6337 0.108329 ACACCGTATAGTGCAGCACC 60.108 55.000 22.41 5.67 41.67 5.01
5848 6338 0.175760 CACCGTATAGTGCAGCACCT 59.824 55.000 22.41 12.38 34.49 4.00
5849 6339 1.407618 CACCGTATAGTGCAGCACCTA 59.592 52.381 22.41 13.58 34.49 3.08
5850 6340 2.104967 ACCGTATAGTGCAGCACCTAA 58.895 47.619 22.41 8.59 34.49 2.69
5851 6341 2.159142 ACCGTATAGTGCAGCACCTAAC 60.159 50.000 22.41 15.40 34.49 2.34
5852 6342 2.100916 CCGTATAGTGCAGCACCTAACT 59.899 50.000 22.41 5.66 34.49 2.24
5853 6343 3.372954 CGTATAGTGCAGCACCTAACTC 58.627 50.000 22.41 7.34 34.49 3.01
5854 6344 3.066900 CGTATAGTGCAGCACCTAACTCT 59.933 47.826 22.41 4.11 34.49 3.24
5855 6345 3.810310 ATAGTGCAGCACCTAACTCTC 57.190 47.619 22.41 0.00 34.49 3.20
5856 6346 1.342074 AGTGCAGCACCTAACTCTCA 58.658 50.000 22.41 0.00 34.49 3.27
5857 6347 1.274728 AGTGCAGCACCTAACTCTCAG 59.725 52.381 22.41 0.00 34.49 3.35
5858 6348 0.610174 TGCAGCACCTAACTCTCAGG 59.390 55.000 0.00 0.00 39.25 3.86
5864 6354 2.841442 ACCTAACTCTCAGGTGTTGC 57.159 50.000 0.00 0.00 44.89 4.17
5865 6355 2.047061 ACCTAACTCTCAGGTGTTGCA 58.953 47.619 0.00 0.00 44.89 4.08
5866 6356 2.224305 ACCTAACTCTCAGGTGTTGCAC 60.224 50.000 0.00 0.00 44.89 4.57
5867 6357 2.224281 CCTAACTCTCAGGTGTTGCACA 60.224 50.000 1.61 0.00 35.86 4.57
5868 6358 2.645838 AACTCTCAGGTGTTGCACAT 57.354 45.000 1.61 0.00 35.86 3.21
5869 6359 2.645838 ACTCTCAGGTGTTGCACATT 57.354 45.000 1.61 0.00 35.86 2.71
5870 6360 2.224606 ACTCTCAGGTGTTGCACATTG 58.775 47.619 1.61 0.16 35.86 2.82
5871 6361 2.158769 ACTCTCAGGTGTTGCACATTGA 60.159 45.455 1.61 4.15 35.86 2.57
5872 6362 2.483106 CTCTCAGGTGTTGCACATTGAG 59.517 50.000 18.46 18.46 42.95 3.02
5873 6363 2.104622 TCTCAGGTGTTGCACATTGAGA 59.895 45.455 21.01 21.01 45.28 3.27
5874 6364 2.483106 CTCAGGTGTTGCACATTGAGAG 59.517 50.000 19.19 6.37 43.59 3.20
5875 6365 1.068748 CAGGTGTTGCACATTGAGAGC 60.069 52.381 1.61 0.00 35.86 4.09
5876 6366 0.953727 GGTGTTGCACATTGAGAGCA 59.046 50.000 1.61 0.00 42.21 4.26
5882 6372 4.587584 TTGCACATTGAGAGCAATTTCA 57.412 36.364 10.30 0.00 46.56 2.69
5883 6373 4.587584 TGCACATTGAGAGCAATTTCAA 57.412 36.364 0.00 0.00 41.87 2.69
5884 6374 5.142061 TGCACATTGAGAGCAATTTCAAT 57.858 34.783 0.00 0.00 41.87 2.57
5889 6379 3.581024 TGAGAGCAATTTCAATGTGGC 57.419 42.857 0.00 0.00 0.00 5.01
5890 6380 2.095110 TGAGAGCAATTTCAATGTGGCG 60.095 45.455 0.00 0.00 0.00 5.69
5891 6381 2.161855 AGAGCAATTTCAATGTGGCGA 58.838 42.857 0.00 0.00 0.00 5.54
5892 6382 2.756760 AGAGCAATTTCAATGTGGCGAT 59.243 40.909 0.00 0.00 0.00 4.58
5893 6383 3.111098 GAGCAATTTCAATGTGGCGATC 58.889 45.455 0.00 0.00 0.00 3.69
5894 6384 2.159198 AGCAATTTCAATGTGGCGATCC 60.159 45.455 0.00 0.00 0.00 3.36
5895 6385 2.417107 GCAATTTCAATGTGGCGATCCA 60.417 45.455 0.00 0.00 40.85 3.41
5896 6386 3.738899 GCAATTTCAATGTGGCGATCCAT 60.739 43.478 0.00 0.00 45.62 3.41
5897 6387 4.435425 CAATTTCAATGTGGCGATCCATT 58.565 39.130 0.00 0.00 45.62 3.16
5898 6388 4.741321 ATTTCAATGTGGCGATCCATTT 57.259 36.364 0.00 0.00 45.62 2.32
5899 6389 4.533919 TTTCAATGTGGCGATCCATTTT 57.466 36.364 0.00 0.00 45.62 1.82
5900 6390 3.507103 TCAATGTGGCGATCCATTTTG 57.493 42.857 0.00 0.00 45.62 2.44
5901 6391 2.824936 TCAATGTGGCGATCCATTTTGT 59.175 40.909 0.00 0.00 45.62 2.83
5902 6392 3.119531 TCAATGTGGCGATCCATTTTGTC 60.120 43.478 0.00 0.00 45.62 3.18
5903 6393 1.173043 TGTGGCGATCCATTTTGTCC 58.827 50.000 0.00 0.00 45.62 4.02
5904 6394 0.098728 GTGGCGATCCATTTTGTCCG 59.901 55.000 0.00 0.00 45.62 4.79
5905 6395 0.322098 TGGCGATCCATTTTGTCCGT 60.322 50.000 0.00 0.00 37.47 4.69
5906 6396 0.808755 GGCGATCCATTTTGTCCGTT 59.191 50.000 0.00 0.00 0.00 4.44
5907 6397 1.201414 GGCGATCCATTTTGTCCGTTT 59.799 47.619 0.00 0.00 0.00 3.60
5908 6398 2.250188 GCGATCCATTTTGTCCGTTTG 58.750 47.619 0.00 0.00 0.00 2.93
5909 6399 2.862512 CGATCCATTTTGTCCGTTTGG 58.137 47.619 0.00 0.00 0.00 3.28
5910 6400 2.415357 CGATCCATTTTGTCCGTTTGGG 60.415 50.000 0.00 0.00 35.24 4.12
5911 6401 2.074729 TCCATTTTGTCCGTTTGGGT 57.925 45.000 0.00 0.00 37.00 4.51
5912 6402 1.957877 TCCATTTTGTCCGTTTGGGTC 59.042 47.619 0.00 0.00 37.00 4.46
5913 6403 1.683917 CCATTTTGTCCGTTTGGGTCA 59.316 47.619 0.00 0.00 37.00 4.02
5914 6404 2.298729 CCATTTTGTCCGTTTGGGTCAT 59.701 45.455 0.00 0.00 33.74 3.06
5915 6405 3.574614 CATTTTGTCCGTTTGGGTCATC 58.425 45.455 0.00 0.00 33.74 2.92
5916 6406 1.611519 TTTGTCCGTTTGGGTCATCC 58.388 50.000 0.00 0.00 33.74 3.51
5917 6407 0.604243 TTGTCCGTTTGGGTCATCCG 60.604 55.000 0.00 0.00 38.76 4.18
5918 6408 1.743995 GTCCGTTTGGGTCATCCGG 60.744 63.158 0.00 0.00 39.98 5.14
5919 6409 1.914263 TCCGTTTGGGTCATCCGGA 60.914 57.895 6.61 6.61 44.74 5.14
5920 6410 1.743995 CCGTTTGGGTCATCCGGAC 60.744 63.158 6.12 0.00 46.20 4.79
5942 6432 1.244816 AAAACTTAGCTCAACGGGGC 58.755 50.000 0.00 0.00 0.00 5.80
5943 6433 0.953960 AAACTTAGCTCAACGGGGCG 60.954 55.000 0.00 0.00 0.00 6.13
5944 6434 1.823169 AACTTAGCTCAACGGGGCGA 61.823 55.000 0.00 0.00 0.00 5.54
5945 6435 1.810030 CTTAGCTCAACGGGGCGAC 60.810 63.158 0.00 0.00 0.00 5.19
5957 6447 3.866356 GGCGACCTAAACGGACAC 58.134 61.111 0.00 0.00 36.31 3.67
5959 6449 2.723719 GCGACCTAAACGGACACGC 61.724 63.158 0.00 0.00 46.04 5.34
5960 6450 1.372004 CGACCTAAACGGACACGCA 60.372 57.895 0.00 0.00 46.04 5.24
5961 6451 0.734942 CGACCTAAACGGACACGCAT 60.735 55.000 0.00 0.00 46.04 4.73
5962 6452 0.719465 GACCTAAACGGACACGCATG 59.281 55.000 0.00 0.00 46.04 4.06
5963 6453 0.034337 ACCTAAACGGACACGCATGT 59.966 50.000 0.00 0.00 46.04 3.21
5975 6465 3.503363 GCATGTCCGCCTGCTGTC 61.503 66.667 0.00 0.00 34.16 3.51
5976 6466 2.821366 CATGTCCGCCTGCTGTCC 60.821 66.667 0.00 0.00 0.00 4.02
5977 6467 4.457496 ATGTCCGCCTGCTGTCCG 62.457 66.667 0.00 0.00 0.00 4.79
5979 6469 4.681978 GTCCGCCTGCTGTCCGTT 62.682 66.667 0.00 0.00 0.00 4.44
5980 6470 3.936203 TCCGCCTGCTGTCCGTTT 61.936 61.111 0.00 0.00 0.00 3.60
5981 6471 3.726517 CCGCCTGCTGTCCGTTTG 61.727 66.667 0.00 0.00 0.00 2.93
5982 6472 2.972505 CGCCTGCTGTCCGTTTGT 60.973 61.111 0.00 0.00 0.00 2.83
5983 6473 2.946762 GCCTGCTGTCCGTTTGTC 59.053 61.111 0.00 0.00 0.00 3.18
5984 6474 1.891919 GCCTGCTGTCCGTTTGTCA 60.892 57.895 0.00 0.00 0.00 3.58
5985 6475 1.237285 GCCTGCTGTCCGTTTGTCAT 61.237 55.000 0.00 0.00 0.00 3.06
5986 6476 0.798776 CCTGCTGTCCGTTTGTCATC 59.201 55.000 0.00 0.00 0.00 2.92
5987 6477 0.798776 CTGCTGTCCGTTTGTCATCC 59.201 55.000 0.00 0.00 0.00 3.51
5988 6478 0.107643 TGCTGTCCGTTTGTCATCCA 59.892 50.000 0.00 0.00 0.00 3.41
5989 6479 0.517316 GCTGTCCGTTTGTCATCCAC 59.483 55.000 0.00 0.00 0.00 4.02
5990 6480 1.156736 CTGTCCGTTTGTCATCCACC 58.843 55.000 0.00 0.00 0.00 4.61
5991 6481 0.250553 TGTCCGTTTGTCATCCACCC 60.251 55.000 0.00 0.00 0.00 4.61
5992 6482 0.958876 GTCCGTTTGTCATCCACCCC 60.959 60.000 0.00 0.00 0.00 4.95
5993 6483 2.038269 CCGTTTGTCATCCACCCCG 61.038 63.158 0.00 0.00 0.00 5.73
5994 6484 1.004320 CGTTTGTCATCCACCCCGA 60.004 57.895 0.00 0.00 0.00 5.14
5995 6485 1.296056 CGTTTGTCATCCACCCCGAC 61.296 60.000 0.00 0.00 0.00 4.79
5996 6486 0.958876 GTTTGTCATCCACCCCGACC 60.959 60.000 0.00 0.00 0.00 4.79
5997 6487 1.131303 TTTGTCATCCACCCCGACCT 61.131 55.000 0.00 0.00 0.00 3.85
5998 6488 0.252330 TTGTCATCCACCCCGACCTA 60.252 55.000 0.00 0.00 0.00 3.08
5999 6489 0.252330 TGTCATCCACCCCGACCTAA 60.252 55.000 0.00 0.00 0.00 2.69
6000 6490 0.906775 GTCATCCACCCCGACCTAAA 59.093 55.000 0.00 0.00 0.00 1.85
6001 6491 0.906775 TCATCCACCCCGACCTAAAC 59.093 55.000 0.00 0.00 0.00 2.01
6002 6492 0.909623 CATCCACCCCGACCTAAACT 59.090 55.000 0.00 0.00 0.00 2.66
6003 6493 0.909623 ATCCACCCCGACCTAAACTG 59.090 55.000 0.00 0.00 0.00 3.16
6004 6494 0.178926 TCCACCCCGACCTAAACTGA 60.179 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 204 7.396419 CGATCTAAAATTTAGGTTACGTGTGG 58.604 38.462 12.29 0.00 0.00 4.17
213 214 4.046462 TCGACCGCGATCTAAAATTTAGG 58.954 43.478 8.23 0.00 42.51 2.69
248 249 9.522804 TGTAATTAAAAGCTCAAAATCGTGTTT 57.477 25.926 0.00 0.00 0.00 2.83
276 288 2.949177 ACAATGCCAACTACAGGTCA 57.051 45.000 0.00 0.00 0.00 4.02
297 313 2.045926 GGCTGGACCACATTCGCT 60.046 61.111 0.00 0.00 38.86 4.93
474 490 4.735132 TGCCTCGTTTCCCTCGCG 62.735 66.667 0.00 0.00 0.00 5.87
537 565 5.337652 CCATAGAGGAAAACTTTCGAGGACT 60.338 44.000 0.00 0.00 41.22 3.85
545 573 5.221864 ACGACTTCCCATAGAGGAAAACTTT 60.222 40.000 0.00 0.00 45.25 2.66
575 603 2.358090 CCCATAAAAGGCATGGAGGTGA 60.358 50.000 3.28 0.00 44.95 4.02
621 649 3.430042 TTACTACCGTGTCTCTGGTCT 57.570 47.619 0.00 0.00 39.70 3.85
622 650 3.066481 GGATTACTACCGTGTCTCTGGTC 59.934 52.174 0.00 0.00 39.70 4.02
623 651 3.022406 GGATTACTACCGTGTCTCTGGT 58.978 50.000 0.00 0.00 42.34 4.00
624 652 3.288964 AGGATTACTACCGTGTCTCTGG 58.711 50.000 0.00 0.00 0.00 3.86
625 653 5.421212 GTAGGATTACTACCGTGTCTCTG 57.579 47.826 0.00 0.00 45.15 3.35
656 684 2.803956 AGTTCGTGTGGGATTTTACGTG 59.196 45.455 0.00 0.00 37.74 4.49
674 702 4.681744 TCGTCACGGTTTTACTTACAGTT 58.318 39.130 0.00 0.00 0.00 3.16
675 703 4.305989 TCGTCACGGTTTTACTTACAGT 57.694 40.909 0.00 0.00 0.00 3.55
676 704 4.741676 AGTTCGTCACGGTTTTACTTACAG 59.258 41.667 0.00 0.00 0.00 2.74
677 705 4.503734 CAGTTCGTCACGGTTTTACTTACA 59.496 41.667 0.00 0.00 0.00 2.41
678 706 4.504097 ACAGTTCGTCACGGTTTTACTTAC 59.496 41.667 0.00 0.00 27.71 2.34
679 707 4.681744 ACAGTTCGTCACGGTTTTACTTA 58.318 39.130 0.00 0.00 27.71 2.24
680 708 3.524541 ACAGTTCGTCACGGTTTTACTT 58.475 40.909 0.00 0.00 27.71 2.24
681 709 3.169355 ACAGTTCGTCACGGTTTTACT 57.831 42.857 0.00 0.00 27.71 2.24
682 710 4.504097 ACTTACAGTTCGTCACGGTTTTAC 59.496 41.667 0.00 0.00 35.21 2.01
683 711 4.681744 ACTTACAGTTCGTCACGGTTTTA 58.318 39.130 0.00 0.00 35.21 1.52
684 712 3.524541 ACTTACAGTTCGTCACGGTTTT 58.475 40.909 0.00 0.00 35.21 2.43
685 713 3.169355 ACTTACAGTTCGTCACGGTTT 57.831 42.857 0.00 0.00 35.21 3.27
686 714 2.877043 ACTTACAGTTCGTCACGGTT 57.123 45.000 0.00 0.00 35.21 4.44
687 715 3.988379 TTACTTACAGTTCGTCACGGT 57.012 42.857 0.00 0.00 37.58 4.83
688 716 4.084900 GGTTTTACTTACAGTTCGTCACGG 60.085 45.833 0.00 0.00 0.00 4.94
689 717 4.374309 CGGTTTTACTTACAGTTCGTCACG 60.374 45.833 0.00 0.00 0.00 4.35
690 718 4.504097 ACGGTTTTACTTACAGTTCGTCAC 59.496 41.667 0.00 0.00 0.00 3.67
691 719 4.503734 CACGGTTTTACTTACAGTTCGTCA 59.496 41.667 0.00 0.00 0.00 4.35
692 720 4.739716 TCACGGTTTTACTTACAGTTCGTC 59.260 41.667 0.00 0.00 0.00 4.20
693 721 4.504097 GTCACGGTTTTACTTACAGTTCGT 59.496 41.667 0.00 0.00 0.00 3.85
694 722 4.374309 CGTCACGGTTTTACTTACAGTTCG 60.374 45.833 0.00 0.00 0.00 3.95
695 723 4.504097 ACGTCACGGTTTTACTTACAGTTC 59.496 41.667 0.35 0.00 0.00 3.01
795 823 1.942586 GCGAACAATACCTGAACCGGT 60.943 52.381 0.00 0.00 41.10 5.28
796 824 0.725117 GCGAACAATACCTGAACCGG 59.275 55.000 0.00 0.00 0.00 5.28
1142 1170 1.076923 GGAGGCGGAGGTGTAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
1150 1178 2.905935 TAAGACGGAGGAGGCGGAGG 62.906 65.000 0.00 0.00 0.00 4.30
1223 1264 2.108566 CCCATGCTCGAGCTCCAG 59.891 66.667 35.27 21.72 42.66 3.86
1266 1307 0.249489 CAGGGACTAATCGAAGCCCG 60.249 60.000 9.55 0.00 43.64 6.13
1288 1329 1.153549 AAGCAAGCGATCTCGGGAC 60.154 57.895 1.34 0.00 40.23 4.46
1311 1352 3.853330 CCACGACGCAATCAGCCG 61.853 66.667 0.00 0.00 41.38 5.52
1321 1362 0.239879 CAATCCCCAAAACCACGACG 59.760 55.000 0.00 0.00 0.00 5.12
1386 1427 2.280628 GAAAGCTACCATGGACCGAAG 58.719 52.381 21.47 8.45 0.00 3.79
1456 1521 3.126858 TCCAACTTAACGATTGCTCATGC 59.873 43.478 0.00 0.00 40.20 4.06
1480 1545 8.101419 AGTTACTGTCCGAATAAAAATTCCTCT 58.899 33.333 0.00 0.00 0.00 3.69
1481 1546 8.175716 CAGTTACTGTCCGAATAAAAATTCCTC 58.824 37.037 3.88 0.00 0.00 3.71
1594 1661 2.094675 AGGAAATGGCTCCATGTTTCG 58.905 47.619 1.59 0.00 38.02 3.46
1616 1683 7.657336 ACACATTTTGATCCAATACGAAGTTT 58.343 30.769 0.00 0.00 37.78 2.66
1824 1891 0.183492 TGAAGTCCTGCCAAACAGCT 59.817 50.000 0.00 0.00 45.78 4.24
1860 1927 0.515127 TAGCAACACAATTGCCGTCG 59.485 50.000 5.05 0.00 45.98 5.12
1990 2057 1.278238 CGTACAATCAGCTTCCGACC 58.722 55.000 0.00 0.00 0.00 4.79
2007 2074 0.319083 TGTTGTGGAGAATACGGCGT 59.681 50.000 19.64 19.64 0.00 5.68
2118 2185 0.937304 CAATCATACGGGCAAGGTCG 59.063 55.000 0.00 0.00 0.00 4.79
2160 2227 4.392940 GAAACCCCAGATCATCCACTATG 58.607 47.826 0.00 0.00 36.88 2.23
2223 2290 6.572167 TCAGCTCTCACTATGTCATATGAG 57.428 41.667 5.42 17.54 39.99 2.90
2310 2377 1.621317 TCAACTGACATGCTAACCCGA 59.379 47.619 0.00 0.00 0.00 5.14
2548 2615 0.038343 GCGGCAACAATGTCACCATT 60.038 50.000 0.00 0.00 42.03 3.16
2549 2616 1.177895 TGCGGCAACAATGTCACCAT 61.178 50.000 0.00 0.00 0.00 3.55
2566 2633 4.856115 GCATAACTCTGAGAAGTTCTGC 57.144 45.455 10.90 14.26 45.76 4.26
2814 2881 3.421567 AGTGGAAGGCCAGTTGTTC 57.578 52.632 5.01 0.00 45.73 3.18
2826 2893 8.296713 GCAGAATCAAACATTAAGTAAGTGGAA 58.703 33.333 0.00 0.00 0.00 3.53
2898 2965 3.369756 CGGTCAAGAAAGCAGCGTAATTA 59.630 43.478 0.00 0.00 0.00 1.40
2904 2971 1.014044 TAGCGGTCAAGAAAGCAGCG 61.014 55.000 0.00 0.00 0.00 5.18
3002 3069 4.409574 TGAAATATAGGTTAGCGGTTGGGA 59.590 41.667 0.00 0.00 0.00 4.37
3012 3079 9.898152 TCACACATGTCATTGAAATATAGGTTA 57.102 29.630 0.00 0.00 0.00 2.85
3120 3187 4.834406 AGTAAGATCCCAGTATCCCTCA 57.166 45.455 0.00 0.00 0.00 3.86
3300 3367 5.244785 TCTTCAATGAATCTGCTGAATGC 57.755 39.130 0.00 0.00 43.25 3.56
3383 3450 6.154363 AGAGAAGGTCTTAGAGTCATTTCCAG 59.846 42.308 0.00 0.00 27.07 3.86
3558 3625 2.238521 GCAAAAGACTTCCACCATCCA 58.761 47.619 0.00 0.00 0.00 3.41
4035 4108 4.947388 GTGCATTATGACCTAAAGTGGGAA 59.053 41.667 0.00 0.00 0.00 3.97
4156 4233 3.749226 AGGAGAAGCTCACAAGGAAAAG 58.251 45.455 0.00 0.00 31.08 2.27
4217 4294 5.887214 ACACATACTAGGCAATCCATACA 57.113 39.130 0.00 0.00 33.74 2.29
4218 4295 7.417612 CAAAACACATACTAGGCAATCCATAC 58.582 38.462 0.00 0.00 33.74 2.39
4219 4296 6.545666 CCAAAACACATACTAGGCAATCCATA 59.454 38.462 0.00 0.00 33.74 2.74
4220 4297 5.360714 CCAAAACACATACTAGGCAATCCAT 59.639 40.000 0.00 0.00 33.74 3.41
4221 4298 4.704540 CCAAAACACATACTAGGCAATCCA 59.295 41.667 0.00 0.00 33.74 3.41
4230 4307 5.529430 CACCAACTGTCCAAAACACATACTA 59.471 40.000 0.00 0.00 33.24 1.82
4320 4635 2.565391 TCACCACGCAGAATAAGAAGGA 59.435 45.455 0.00 0.00 0.00 3.36
4356 4671 6.267928 AGTCGCATCCTGGTAGAATTACTATT 59.732 38.462 0.00 0.00 33.39 1.73
4357 4672 5.775701 AGTCGCATCCTGGTAGAATTACTAT 59.224 40.000 0.00 0.00 33.39 2.12
4358 4673 5.138276 AGTCGCATCCTGGTAGAATTACTA 58.862 41.667 0.00 0.00 0.00 1.82
4359 4674 3.961408 AGTCGCATCCTGGTAGAATTACT 59.039 43.478 0.00 0.00 0.00 2.24
4360 4675 4.323553 AGTCGCATCCTGGTAGAATTAC 57.676 45.455 0.00 0.00 0.00 1.89
4426 4866 7.548196 TTTTAGTCTTCAACGTCTGTGATTT 57.452 32.000 0.00 0.00 0.00 2.17
4610 5065 6.096001 GGAGAAACAGAGCCACAATGATTAAT 59.904 38.462 0.00 0.00 0.00 1.40
4638 5093 8.296211 TGATGGATCATGAAATTTCAAGCTAA 57.704 30.769 23.91 9.57 41.13 3.09
4718 5173 7.054491 ACAAGTCAAATTGGTCAGCTTTTAT 57.946 32.000 0.00 0.00 34.36 1.40
4719 5174 6.460953 GGACAAGTCAAATTGGTCAGCTTTTA 60.461 38.462 2.29 0.00 34.36 1.52
4720 5175 5.343307 ACAAGTCAAATTGGTCAGCTTTT 57.657 34.783 0.00 0.00 34.36 2.27
4722 5177 3.319122 GGACAAGTCAAATTGGTCAGCTT 59.681 43.478 2.29 0.00 34.36 3.74
4723 5178 2.887152 GGACAAGTCAAATTGGTCAGCT 59.113 45.455 2.29 0.00 34.36 4.24
4724 5179 2.350772 CGGACAAGTCAAATTGGTCAGC 60.351 50.000 2.29 0.00 34.36 4.26
4729 5184 1.608590 ACTGCGGACAAGTCAAATTGG 59.391 47.619 0.00 0.00 34.36 3.16
4730 5185 3.354089 AACTGCGGACAAGTCAAATTG 57.646 42.857 0.00 0.00 36.22 2.32
4736 5191 4.631813 AGATGAAATAACTGCGGACAAGTC 59.368 41.667 0.00 0.00 0.00 3.01
4752 5207 3.057969 ACGCCTTCATCACAGATGAAA 57.942 42.857 19.41 7.46 38.69 2.69
4804 5259 0.399454 CTGGACAGGGGCATGGATAG 59.601 60.000 0.00 0.00 0.00 2.08
4823 5278 4.708726 ACATGATTAAGTTGCTGCTTCC 57.291 40.909 0.00 0.00 0.00 3.46
4862 5317 5.077564 ACCTCATTGTACAGACAGTGTAGA 58.922 41.667 0.00 0.00 42.56 2.59
4866 5321 5.965922 TGATACCTCATTGTACAGACAGTG 58.034 41.667 0.00 0.00 42.96 3.66
4868 5323 6.038985 CACTGATACCTCATTGTACAGACAG 58.961 44.000 0.00 0.00 36.76 3.51
4930 5385 4.261405 CCAAACTGTCTAAAAATGGCACGA 60.261 41.667 0.00 0.00 0.00 4.35
4973 5428 3.007940 CAGGATACACACCCAGTCAAGAA 59.992 47.826 0.00 0.00 41.41 2.52
5114 5570 5.357445 CGTATCTGACGTGTGACAATTAC 57.643 43.478 0.00 0.00 46.86 1.89
5222 5678 3.988379 TGACAAATTCCAGCAACAGAC 57.012 42.857 0.00 0.00 0.00 3.51
5228 5684 2.224018 GCAAGGTTGACAAATTCCAGCA 60.224 45.455 0.00 0.00 0.00 4.41
5231 5687 3.640498 TCATGCAAGGTTGACAAATTCCA 59.360 39.130 0.00 0.00 0.00 3.53
5250 5706 2.198827 TCGGTGGCAATTTCAGTCAT 57.801 45.000 0.00 0.00 0.00 3.06
5321 5810 2.032620 ACCCTACTCTGGCTACGATTG 58.967 52.381 0.00 0.00 0.00 2.67
5322 5811 2.431057 CAACCCTACTCTGGCTACGATT 59.569 50.000 0.00 0.00 0.00 3.34
5323 5812 2.032620 CAACCCTACTCTGGCTACGAT 58.967 52.381 0.00 0.00 0.00 3.73
5324 5813 1.471119 CAACCCTACTCTGGCTACGA 58.529 55.000 0.00 0.00 0.00 3.43
5325 5814 0.460311 CCAACCCTACTCTGGCTACG 59.540 60.000 0.00 0.00 0.00 3.51
5330 5819 1.351017 TCTTTGCCAACCCTACTCTGG 59.649 52.381 0.00 0.00 0.00 3.86
5331 5820 2.704572 CTCTTTGCCAACCCTACTCTG 58.295 52.381 0.00 0.00 0.00 3.35
5332 5821 1.003696 GCTCTTTGCCAACCCTACTCT 59.996 52.381 0.00 0.00 35.15 3.24
5333 5822 1.003696 AGCTCTTTGCCAACCCTACTC 59.996 52.381 0.00 0.00 44.23 2.59
5334 5823 1.003696 GAGCTCTTTGCCAACCCTACT 59.996 52.381 6.43 0.00 44.23 2.57
5335 5824 1.003696 AGAGCTCTTTGCCAACCCTAC 59.996 52.381 11.45 0.00 44.23 3.18
5336 5825 1.362224 AGAGCTCTTTGCCAACCCTA 58.638 50.000 11.45 0.00 44.23 3.53
5337 5826 1.003696 GTAGAGCTCTTTGCCAACCCT 59.996 52.381 23.84 0.00 44.23 4.34
5338 5827 1.271379 TGTAGAGCTCTTTGCCAACCC 60.271 52.381 23.84 0.00 44.23 4.11
5339 5828 2.185004 TGTAGAGCTCTTTGCCAACC 57.815 50.000 23.84 0.95 44.23 3.77
5340 5829 3.610349 GCTTTGTAGAGCTCTTTGCCAAC 60.610 47.826 23.84 13.31 44.23 3.77
5341 5830 2.554032 GCTTTGTAGAGCTCTTTGCCAA 59.446 45.455 23.84 16.09 44.23 4.52
5342 5831 2.154462 GCTTTGTAGAGCTCTTTGCCA 58.846 47.619 23.84 10.98 44.23 4.92
5343 5832 2.095516 GTGCTTTGTAGAGCTCTTTGCC 60.096 50.000 23.84 8.40 43.11 4.52
5344 5833 2.095516 GGTGCTTTGTAGAGCTCTTTGC 60.096 50.000 23.84 17.99 43.11 3.68
5345 5834 3.188048 CAGGTGCTTTGTAGAGCTCTTTG 59.812 47.826 23.84 8.92 43.11 2.77
5346 5835 3.071602 TCAGGTGCTTTGTAGAGCTCTTT 59.928 43.478 23.84 0.03 43.11 2.52
5347 5836 2.634940 TCAGGTGCTTTGTAGAGCTCTT 59.365 45.455 23.84 6.22 43.11 2.85
5348 5837 2.251818 TCAGGTGCTTTGTAGAGCTCT 58.748 47.619 22.17 22.17 43.11 4.09
5349 5838 2.751166 TCAGGTGCTTTGTAGAGCTC 57.249 50.000 5.27 5.27 43.11 4.09
5350 5839 3.710209 ATTCAGGTGCTTTGTAGAGCT 57.290 42.857 0.00 0.00 43.11 4.09
5351 5840 3.503748 ACAATTCAGGTGCTTTGTAGAGC 59.496 43.478 0.00 0.00 43.00 4.09
5355 5844 3.756434 GGCTACAATTCAGGTGCTTTGTA 59.244 43.478 0.00 0.00 34.39 2.41
5356 5845 2.558359 GGCTACAATTCAGGTGCTTTGT 59.442 45.455 0.00 0.00 36.37 2.83
5357 5846 2.557924 TGGCTACAATTCAGGTGCTTTG 59.442 45.455 0.00 0.00 0.00 2.77
5358 5847 2.821969 CTGGCTACAATTCAGGTGCTTT 59.178 45.455 0.00 0.00 0.00 3.51
5359 5848 2.040278 TCTGGCTACAATTCAGGTGCTT 59.960 45.455 0.00 0.00 0.00 3.91
5360 5849 1.630369 TCTGGCTACAATTCAGGTGCT 59.370 47.619 0.00 0.00 0.00 4.40
5361 5850 2.012673 CTCTGGCTACAATTCAGGTGC 58.987 52.381 0.00 0.00 0.00 5.01
5362 5851 3.340814 ACTCTGGCTACAATTCAGGTG 57.659 47.619 0.00 0.00 0.00 4.00
5363 5852 3.452627 CCTACTCTGGCTACAATTCAGGT 59.547 47.826 0.00 0.00 0.00 4.00
5364 5853 3.181461 CCCTACTCTGGCTACAATTCAGG 60.181 52.174 0.00 0.00 0.00 3.86
5365 5854 3.452627 ACCCTACTCTGGCTACAATTCAG 59.547 47.826 0.00 0.00 0.00 3.02
5366 5855 3.450904 ACCCTACTCTGGCTACAATTCA 58.549 45.455 0.00 0.00 0.00 2.57
5429 5919 8.409358 AGTCTGAAAATAAGCCAAACTGTAAT 57.591 30.769 0.00 0.00 0.00 1.89
5553 6043 8.511465 AATTCTGTTTGTGAATTGATTTCGAG 57.489 30.769 0.00 0.00 41.06 4.04
5584 6074 3.196254 AGGGTCTACGGAGCGATTAAAAA 59.804 43.478 0.00 0.00 40.51 1.94
5585 6075 2.762327 AGGGTCTACGGAGCGATTAAAA 59.238 45.455 0.00 0.00 40.51 1.52
5586 6076 2.381911 AGGGTCTACGGAGCGATTAAA 58.618 47.619 0.00 0.00 40.51 1.52
5587 6077 2.062971 AGGGTCTACGGAGCGATTAA 57.937 50.000 0.00 0.00 40.51 1.40
5588 6078 2.062971 AAGGGTCTACGGAGCGATTA 57.937 50.000 0.00 0.00 40.51 1.75
5593 6083 0.458025 CACGAAAGGGTCTACGGAGC 60.458 60.000 0.00 0.00 39.05 4.70
5606 6096 1.912001 CTATCGGGCGTTACACGAAA 58.088 50.000 0.00 0.00 46.05 3.46
5607 6097 0.526096 GCTATCGGGCGTTACACGAA 60.526 55.000 0.00 0.00 46.05 3.85
5608 6098 1.064621 GCTATCGGGCGTTACACGA 59.935 57.895 0.00 0.00 46.05 4.35
5609 6099 1.947642 GGCTATCGGGCGTTACACG 60.948 63.158 0.00 0.00 45.88 4.49
5610 6100 4.023173 GGCTATCGGGCGTTACAC 57.977 61.111 0.00 0.00 0.00 2.90
5637 6127 2.719046 GTCAAACGTTGCACAATGTAGC 59.281 45.455 0.00 0.00 39.43 3.58
5650 6140 0.872881 AGCGCGTGTTAGTCAAACGT 60.873 50.000 8.43 0.00 41.30 3.99
5653 6143 2.137129 TGTAGCGCGTGTTAGTCAAA 57.863 45.000 8.43 0.00 0.00 2.69
5668 6158 1.686587 TGACGATGGCCAGGTATGTAG 59.313 52.381 13.05 0.00 0.00 2.74
5673 6163 0.464036 GATGTGACGATGGCCAGGTA 59.536 55.000 13.05 0.00 0.00 3.08
5674 6164 1.221840 GATGTGACGATGGCCAGGT 59.778 57.895 13.05 12.30 0.00 4.00
5678 6168 1.040646 TCTAGGATGTGACGATGGCC 58.959 55.000 0.00 0.00 0.00 5.36
5681 6171 2.544694 GGCAGTCTAGGATGTGACGATG 60.545 54.545 0.00 0.00 38.16 3.84
5683 6173 1.103803 GGCAGTCTAGGATGTGACGA 58.896 55.000 0.00 0.00 38.16 4.20
5691 6181 3.009473 AGCAATTTTCAGGCAGTCTAGGA 59.991 43.478 0.00 0.00 0.00 2.94
5693 6183 5.645497 ACTTAGCAATTTTCAGGCAGTCTAG 59.355 40.000 0.00 0.00 0.00 2.43
5702 6192 6.437928 TGCACACTAACTTAGCAATTTTCAG 58.562 36.000 0.00 0.00 31.42 3.02
5718 6208 1.783284 CTCTCAAGCGTTGCACACTA 58.217 50.000 0.00 0.00 0.00 2.74
5734 6224 7.790584 ACTATATAGTGTAGCGCCCAGCTCT 62.791 48.000 14.71 0.85 43.75 4.09
5735 6225 5.640544 ACTATATAGTGTAGCGCCCAGCTC 61.641 50.000 14.71 0.00 43.75 4.09
5736 6226 3.814676 ACTATATAGTGTAGCGCCCAGCT 60.815 47.826 14.71 0.00 46.70 4.24
5737 6227 2.492484 ACTATATAGTGTAGCGCCCAGC 59.508 50.000 14.71 0.00 39.85 4.85
5738 6228 4.098055 CACTATATAGTGTAGCGCCCAG 57.902 50.000 27.86 5.21 46.51 4.45
5764 6254 1.303309 CACTAGTGCAATGCCTAGGC 58.697 55.000 27.71 27.71 35.39 3.93
5765 6255 2.169352 AGACACTAGTGCAATGCCTAGG 59.831 50.000 22.90 3.67 35.39 3.02
5766 6256 3.193263 CAGACACTAGTGCAATGCCTAG 58.807 50.000 22.90 21.12 36.35 3.02
5767 6257 2.677902 GCAGACACTAGTGCAATGCCTA 60.678 50.000 25.71 3.08 39.62 3.93
5768 6258 1.947678 GCAGACACTAGTGCAATGCCT 60.948 52.381 25.71 12.08 39.62 4.75
5769 6259 0.449388 GCAGACACTAGTGCAATGCC 59.551 55.000 25.71 14.31 39.62 4.40
5770 6260 1.446907 AGCAGACACTAGTGCAATGC 58.553 50.000 27.44 27.44 42.47 3.56
5771 6261 3.069289 TGAAGCAGACACTAGTGCAATG 58.931 45.455 22.90 18.23 42.47 2.82
5772 6262 3.407424 TGAAGCAGACACTAGTGCAAT 57.593 42.857 22.90 3.19 42.47 3.56
5773 6263 2.908688 TGAAGCAGACACTAGTGCAA 57.091 45.000 22.90 0.00 42.47 4.08
5774 6264 2.564504 AGATGAAGCAGACACTAGTGCA 59.435 45.455 22.90 10.85 42.47 4.57
5775 6265 3.244033 AGATGAAGCAGACACTAGTGC 57.756 47.619 22.90 14.96 40.17 4.40
5776 6266 4.564041 ACAAGATGAAGCAGACACTAGTG 58.436 43.478 21.44 21.44 0.00 2.74
5777 6267 4.881019 ACAAGATGAAGCAGACACTAGT 57.119 40.909 0.00 0.00 0.00 2.57
5778 6268 5.804473 CACTACAAGATGAAGCAGACACTAG 59.196 44.000 0.00 0.00 0.00 2.57
5779 6269 5.336770 CCACTACAAGATGAAGCAGACACTA 60.337 44.000 0.00 0.00 0.00 2.74
5780 6270 4.562347 CCACTACAAGATGAAGCAGACACT 60.562 45.833 0.00 0.00 0.00 3.55
5781 6271 3.681897 CCACTACAAGATGAAGCAGACAC 59.318 47.826 0.00 0.00 0.00 3.67
5782 6272 3.866066 GCCACTACAAGATGAAGCAGACA 60.866 47.826 0.00 0.00 0.00 3.41
5783 6273 2.675348 GCCACTACAAGATGAAGCAGAC 59.325 50.000 0.00 0.00 0.00 3.51
5784 6274 2.302733 TGCCACTACAAGATGAAGCAGA 59.697 45.455 0.00 0.00 0.00 4.26
5785 6275 2.703416 TGCCACTACAAGATGAAGCAG 58.297 47.619 0.00 0.00 0.00 4.24
5786 6276 2.857186 TGCCACTACAAGATGAAGCA 57.143 45.000 0.00 0.00 0.00 3.91
5787 6277 4.708726 ATTTGCCACTACAAGATGAAGC 57.291 40.909 0.00 0.00 0.00 3.86
5788 6278 6.372659 ACACTATTTGCCACTACAAGATGAAG 59.627 38.462 0.00 0.00 0.00 3.02
5789 6279 6.237901 ACACTATTTGCCACTACAAGATGAA 58.762 36.000 0.00 0.00 0.00 2.57
5790 6280 5.804639 ACACTATTTGCCACTACAAGATGA 58.195 37.500 0.00 0.00 0.00 2.92
5791 6281 6.238211 GCTACACTATTTGCCACTACAAGATG 60.238 42.308 0.00 0.00 0.00 2.90
5792 6282 5.817816 GCTACACTATTTGCCACTACAAGAT 59.182 40.000 0.00 0.00 0.00 2.40
5793 6283 5.175859 GCTACACTATTTGCCACTACAAGA 58.824 41.667 0.00 0.00 0.00 3.02
5794 6284 4.332819 GGCTACACTATTTGCCACTACAAG 59.667 45.833 0.00 0.00 44.34 3.16
5795 6285 4.258543 GGCTACACTATTTGCCACTACAA 58.741 43.478 0.00 0.00 44.34 2.41
5796 6286 3.869065 GGCTACACTATTTGCCACTACA 58.131 45.455 0.00 0.00 44.34 2.74
5816 6306 1.378882 TACGGTGTAGCGCCTAGTGG 61.379 60.000 2.29 0.00 0.00 4.00
5817 6307 0.666913 ATACGGTGTAGCGCCTAGTG 59.333 55.000 2.29 0.00 0.00 2.74
5818 6308 2.149578 CTATACGGTGTAGCGCCTAGT 58.850 52.381 2.29 0.00 0.00 2.57
5819 6309 2.095869 CACTATACGGTGTAGCGCCTAG 60.096 54.545 2.29 7.24 33.04 3.02
5820 6310 1.875514 CACTATACGGTGTAGCGCCTA 59.124 52.381 2.29 0.00 33.04 3.93
5821 6311 0.666913 CACTATACGGTGTAGCGCCT 59.333 55.000 2.29 0.00 33.04 5.52
5822 6312 0.938168 GCACTATACGGTGTAGCGCC 60.938 60.000 12.26 0.00 39.21 6.53
5823 6313 0.248743 TGCACTATACGGTGTAGCGC 60.249 55.000 15.34 15.34 39.21 5.92
5824 6314 1.755161 CTGCACTATACGGTGTAGCG 58.245 55.000 11.31 3.97 41.39 4.26
5827 6317 1.135527 GGTGCTGCACTATACGGTGTA 59.864 52.381 29.54 0.00 39.21 2.90
5828 6318 0.108329 GGTGCTGCACTATACGGTGT 60.108 55.000 29.54 0.00 39.21 4.16
5829 6319 0.175760 AGGTGCTGCACTATACGGTG 59.824 55.000 29.54 0.00 39.91 4.94
5830 6320 1.771565 TAGGTGCTGCACTATACGGT 58.228 50.000 29.54 10.26 34.40 4.83
5831 6321 2.100916 AGTTAGGTGCTGCACTATACGG 59.899 50.000 29.54 0.00 34.40 4.02
5832 6322 3.066900 AGAGTTAGGTGCTGCACTATACG 59.933 47.826 29.54 0.00 34.40 3.06
5833 6323 4.098044 TGAGAGTTAGGTGCTGCACTATAC 59.902 45.833 29.54 22.58 34.40 1.47
5834 6324 4.278310 TGAGAGTTAGGTGCTGCACTATA 58.722 43.478 29.54 20.10 34.40 1.31
5835 6325 3.099905 TGAGAGTTAGGTGCTGCACTAT 58.900 45.455 29.54 21.04 34.40 2.12
5836 6326 2.493675 CTGAGAGTTAGGTGCTGCACTA 59.506 50.000 29.54 17.65 34.40 2.74
5837 6327 1.274728 CTGAGAGTTAGGTGCTGCACT 59.725 52.381 29.54 18.58 34.40 4.40
5838 6328 1.674221 CCTGAGAGTTAGGTGCTGCAC 60.674 57.143 24.02 24.02 0.00 4.57
5839 6329 0.610174 CCTGAGAGTTAGGTGCTGCA 59.390 55.000 0.00 0.00 0.00 4.41
5840 6330 0.610687 ACCTGAGAGTTAGGTGCTGC 59.389 55.000 0.00 0.00 46.48 5.25
5845 6335 4.764518 TGTGCAACACCTGAGAGTTAGGT 61.765 47.826 0.00 0.00 45.67 3.08
5846 6336 2.224281 TGTGCAACACCTGAGAGTTAGG 60.224 50.000 0.00 0.00 45.67 2.69
5847 6337 3.111853 TGTGCAACACCTGAGAGTTAG 57.888 47.619 0.00 0.00 45.67 2.34
5862 6352 4.587584 TTGAAATTGCTCTCAATGTGCA 57.412 36.364 0.00 0.00 41.77 4.57
5867 6357 4.501071 GCCACATTGAAATTGCTCTCAAT 58.499 39.130 0.00 0.00 44.32 2.57
5868 6358 3.612241 CGCCACATTGAAATTGCTCTCAA 60.612 43.478 0.00 0.00 36.08 3.02
5869 6359 2.095110 CGCCACATTGAAATTGCTCTCA 60.095 45.455 0.00 0.00 0.00 3.27
5870 6360 2.162208 TCGCCACATTGAAATTGCTCTC 59.838 45.455 0.00 0.00 0.00 3.20
5871 6361 2.161855 TCGCCACATTGAAATTGCTCT 58.838 42.857 0.00 0.00 0.00 4.09
5872 6362 2.634982 TCGCCACATTGAAATTGCTC 57.365 45.000 0.00 0.00 0.00 4.26
5873 6363 2.159198 GGATCGCCACATTGAAATTGCT 60.159 45.455 0.00 0.00 0.00 3.91
5874 6364 2.195922 GGATCGCCACATTGAAATTGC 58.804 47.619 0.00 0.00 0.00 3.56
5875 6365 3.507103 TGGATCGCCACATTGAAATTG 57.493 42.857 0.00 0.00 39.92 2.32
5887 6377 0.808755 AACGGACAAAATGGATCGCC 59.191 50.000 0.00 0.00 0.00 5.54
5888 6378 2.250188 CAAACGGACAAAATGGATCGC 58.750 47.619 0.00 0.00 0.00 4.58
5889 6379 2.415357 CCCAAACGGACAAAATGGATCG 60.415 50.000 0.00 0.00 32.82 3.69
5890 6380 2.560981 ACCCAAACGGACAAAATGGATC 59.439 45.455 0.00 0.00 32.82 3.36
5891 6381 2.560981 GACCCAAACGGACAAAATGGAT 59.439 45.455 0.00 0.00 32.82 3.41
5892 6382 1.957877 GACCCAAACGGACAAAATGGA 59.042 47.619 0.00 0.00 32.82 3.41
5893 6383 1.683917 TGACCCAAACGGACAAAATGG 59.316 47.619 0.00 0.00 33.04 3.16
5894 6384 3.574614 GATGACCCAAACGGACAAAATG 58.425 45.455 0.00 0.00 39.83 2.32
5895 6385 2.560981 GGATGACCCAAACGGACAAAAT 59.439 45.455 0.00 0.00 39.83 1.82
5896 6386 1.957877 GGATGACCCAAACGGACAAAA 59.042 47.619 0.00 0.00 39.83 2.44
5897 6387 1.611519 GGATGACCCAAACGGACAAA 58.388 50.000 0.00 0.00 39.83 2.83
5898 6388 0.604243 CGGATGACCCAAACGGACAA 60.604 55.000 0.00 0.00 39.83 3.18
5899 6389 1.004320 CGGATGACCCAAACGGACA 60.004 57.895 0.00 0.00 40.71 4.02
5900 6390 3.884900 CGGATGACCCAAACGGAC 58.115 61.111 0.00 0.00 34.64 4.79
5902 6392 1.743995 GTCCGGATGACCCAAACGG 60.744 63.158 7.81 0.00 45.52 4.44
5903 6393 0.604243 TTGTCCGGATGACCCAAACG 60.604 55.000 7.81 0.00 43.78 3.60
5904 6394 1.611519 TTTGTCCGGATGACCCAAAC 58.388 50.000 7.81 0.00 43.78 2.93
5905 6395 2.366640 TTTTGTCCGGATGACCCAAA 57.633 45.000 7.81 10.42 43.78 3.28
5906 6396 2.366640 TTTTTGTCCGGATGACCCAA 57.633 45.000 7.81 3.44 43.78 4.12
5922 6412 1.611977 GCCCCGTTGAGCTAAGTTTTT 59.388 47.619 0.00 0.00 0.00 1.94
5923 6413 1.244816 GCCCCGTTGAGCTAAGTTTT 58.755 50.000 0.00 0.00 0.00 2.43
5924 6414 0.953960 CGCCCCGTTGAGCTAAGTTT 60.954 55.000 0.00 0.00 0.00 2.66
5925 6415 1.375523 CGCCCCGTTGAGCTAAGTT 60.376 57.895 0.00 0.00 0.00 2.66
5926 6416 2.264794 CGCCCCGTTGAGCTAAGT 59.735 61.111 0.00 0.00 0.00 2.24
5927 6417 1.810030 GTCGCCCCGTTGAGCTAAG 60.810 63.158 0.00 0.00 0.00 2.18
5928 6418 2.263540 GTCGCCCCGTTGAGCTAA 59.736 61.111 0.00 0.00 0.00 3.09
5929 6419 2.842188 TAGGTCGCCCCGTTGAGCTA 62.842 60.000 0.00 0.00 42.47 3.32
5931 6421 2.791501 TTTAGGTCGCCCCGTTGAGC 62.792 60.000 0.00 0.00 38.74 4.26
5932 6422 1.017701 GTTTAGGTCGCCCCGTTGAG 61.018 60.000 0.00 0.00 38.74 3.02
5933 6423 1.004679 GTTTAGGTCGCCCCGTTGA 60.005 57.895 0.00 0.00 38.74 3.18
5934 6424 2.385091 CGTTTAGGTCGCCCCGTTG 61.385 63.158 0.00 0.00 38.74 4.10
5935 6425 2.047939 CGTTTAGGTCGCCCCGTT 60.048 61.111 0.00 0.00 38.74 4.44
5936 6426 4.073200 CCGTTTAGGTCGCCCCGT 62.073 66.667 0.00 0.00 38.74 5.28
5937 6427 3.762247 TCCGTTTAGGTCGCCCCG 61.762 66.667 0.00 0.00 41.99 5.73
5938 6428 2.125391 GTCCGTTTAGGTCGCCCC 60.125 66.667 0.00 0.00 41.99 5.80
5939 6429 1.739196 GTGTCCGTTTAGGTCGCCC 60.739 63.158 0.00 0.00 41.99 6.13
5940 6430 2.090524 CGTGTCCGTTTAGGTCGCC 61.091 63.158 0.00 0.00 41.99 5.54
5941 6431 2.723719 GCGTGTCCGTTTAGGTCGC 61.724 63.158 0.00 0.00 43.10 5.19
5942 6432 0.734942 ATGCGTGTCCGTTTAGGTCG 60.735 55.000 0.00 0.00 41.99 4.79
5943 6433 0.719465 CATGCGTGTCCGTTTAGGTC 59.281 55.000 0.00 0.00 41.99 3.85
5944 6434 0.034337 ACATGCGTGTCCGTTTAGGT 59.966 50.000 5.51 0.00 41.99 3.08
5945 6435 2.835605 ACATGCGTGTCCGTTTAGG 58.164 52.632 5.51 0.00 42.97 2.69
5958 6448 3.503363 GACAGCAGGCGGACATGC 61.503 66.667 0.00 0.00 42.87 4.06
5959 6449 2.821366 GGACAGCAGGCGGACATG 60.821 66.667 0.00 0.00 0.00 3.21
5960 6450 4.457496 CGGACAGCAGGCGGACAT 62.457 66.667 0.00 0.00 0.00 3.06
5962 6452 4.681978 AACGGACAGCAGGCGGAC 62.682 66.667 0.00 0.00 0.00 4.79
5963 6453 3.936203 AAACGGACAGCAGGCGGA 61.936 61.111 0.00 0.00 0.00 5.54
5964 6454 3.726517 CAAACGGACAGCAGGCGG 61.727 66.667 0.00 0.00 0.00 6.13
5965 6455 2.954753 GACAAACGGACAGCAGGCG 61.955 63.158 0.00 0.00 0.00 5.52
5966 6456 1.237285 ATGACAAACGGACAGCAGGC 61.237 55.000 0.00 0.00 0.00 4.85
5967 6457 0.798776 GATGACAAACGGACAGCAGG 59.201 55.000 0.00 0.00 0.00 4.85
5968 6458 0.798776 GGATGACAAACGGACAGCAG 59.201 55.000 0.00 0.00 29.03 4.24
5969 6459 0.107643 TGGATGACAAACGGACAGCA 59.892 50.000 0.00 0.00 29.03 4.41
5970 6460 0.517316 GTGGATGACAAACGGACAGC 59.483 55.000 0.00 0.00 0.00 4.40
5971 6461 1.156736 GGTGGATGACAAACGGACAG 58.843 55.000 0.00 0.00 0.00 3.51
5972 6462 0.250553 GGGTGGATGACAAACGGACA 60.251 55.000 0.00 0.00 0.00 4.02
5973 6463 0.958876 GGGGTGGATGACAAACGGAC 60.959 60.000 0.00 0.00 0.00 4.79
5974 6464 1.377229 GGGGTGGATGACAAACGGA 59.623 57.895 0.00 0.00 0.00 4.69
5975 6465 2.038269 CGGGGTGGATGACAAACGG 61.038 63.158 0.00 0.00 0.00 4.44
5976 6466 1.004320 TCGGGGTGGATGACAAACG 60.004 57.895 0.00 0.00 0.00 3.60
5977 6467 0.958876 GGTCGGGGTGGATGACAAAC 60.959 60.000 0.00 0.00 34.32 2.93
5978 6468 1.131303 AGGTCGGGGTGGATGACAAA 61.131 55.000 0.00 0.00 34.32 2.83
5979 6469 0.252330 TAGGTCGGGGTGGATGACAA 60.252 55.000 0.00 0.00 34.32 3.18
5980 6470 0.252330 TTAGGTCGGGGTGGATGACA 60.252 55.000 0.00 0.00 34.32 3.58
5981 6471 0.906775 TTTAGGTCGGGGTGGATGAC 59.093 55.000 0.00 0.00 0.00 3.06
5982 6472 0.906775 GTTTAGGTCGGGGTGGATGA 59.093 55.000 0.00 0.00 0.00 2.92
5983 6473 0.909623 AGTTTAGGTCGGGGTGGATG 59.090 55.000 0.00 0.00 0.00 3.51
5984 6474 0.909623 CAGTTTAGGTCGGGGTGGAT 59.090 55.000 0.00 0.00 0.00 3.41
5985 6475 0.178926 TCAGTTTAGGTCGGGGTGGA 60.179 55.000 0.00 0.00 0.00 4.02
5986 6476 2.368591 TCAGTTTAGGTCGGGGTGG 58.631 57.895 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.