Multiple sequence alignment - TraesCS3A01G255400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G255400 chr3A 100.000 5396 0 0 1 5396 477337401 477332006 0.000000e+00 9965.0
1 TraesCS3A01G255400 chr3A 95.699 93 2 2 558 649 477336788 477336697 1.210000e-31 148.0
2 TraesCS3A01G255400 chr3A 95.699 93 2 2 614 705 477336844 477336753 1.210000e-31 148.0
3 TraesCS3A01G255400 chr3D 93.228 4356 188 44 938 5252 357804215 357799926 0.000000e+00 6311.0
4 TraesCS3A01G255400 chr3D 80.295 746 94 23 2204 2923 53782901 53782183 1.040000e-141 514.0
5 TraesCS3A01G255400 chr3D 88.710 186 20 1 1674 1858 434921056 434920871 5.440000e-55 226.0
6 TraesCS3A01G255400 chr3D 82.243 107 13 6 817 922 357804620 357804519 2.680000e-13 87.9
7 TraesCS3A01G255400 chr3B 92.446 4382 208 37 938 5249 459448825 459444497 0.000000e+00 6144.0
8 TraesCS3A01G255400 chr3B 80.453 353 37 15 28 364 459451063 459450727 1.940000e-59 241.0
9 TraesCS3A01G255400 chr3B 94.000 50 3 0 869 918 459449401 459449352 5.800000e-10 76.8
10 TraesCS3A01G255400 chr4A 92.571 1750 93 13 3042 4773 137109813 137108083 0.000000e+00 2477.0
11 TraesCS3A01G255400 chr4A 85.634 536 62 3 1671 2206 595391846 595392366 2.840000e-152 549.0
12 TraesCS3A01G255400 chr4A 97.196 107 3 0 5254 5360 516936217 516936323 1.190000e-41 182.0
13 TraesCS3A01G255400 chr2B 85.529 539 63 3 1671 2209 13325788 13325265 2.840000e-152 549.0
14 TraesCS3A01G255400 chr2B 80.682 528 72 13 2257 2758 13325254 13324731 3.050000e-102 383.0
15 TraesCS3A01G255400 chr2D 79.206 856 122 30 2092 2920 595031700 595032526 1.320000e-150 544.0
16 TraesCS3A01G255400 chr2D 80.027 746 96 23 2204 2923 74144168 74143450 2.240000e-138 503.0
17 TraesCS3A01G255400 chrUn 80.723 747 88 27 2204 2923 79580892 79580175 1.030000e-146 531.0
18 TraesCS3A01G255400 chr7D 80.187 747 94 24 2204 2923 221986483 221987202 1.340000e-140 510.0
19 TraesCS3A01G255400 chr7D 89.049 347 38 0 1865 2211 541413356 541413010 1.070000e-116 431.0
20 TraesCS3A01G255400 chr7D 81.285 529 67 19 2257 2758 541413001 541412478 3.030000e-107 399.0
21 TraesCS3A01G255400 chr7D 94.643 112 6 0 5254 5365 392643334 392643223 2.000000e-39 174.0
22 TraesCS3A01G255400 chr1D 80.161 746 95 23 2204 2923 319561239 319560521 4.820000e-140 508.0
23 TraesCS3A01G255400 chr6D 87.440 207 24 2 3109 3315 438548648 438548852 2.510000e-58 237.0
24 TraesCS3A01G255400 chr6D 98.182 110 2 0 5251 5360 439917031 439917140 5.520000e-45 193.0
25 TraesCS3A01G255400 chr4B 98.165 109 2 0 5253 5361 414860853 414860745 1.980000e-44 191.0
26 TraesCS3A01G255400 chr4B 93.913 115 6 1 5254 5368 87405118 87405231 7.190000e-39 172.0
27 TraesCS3A01G255400 chr7B 97.196 107 3 0 5254 5360 683101467 683101573 1.190000e-41 182.0
28 TraesCS3A01G255400 chr6B 97.196 107 3 0 5254 5360 640973341 640973235 1.190000e-41 182.0
29 TraesCS3A01G255400 chr5B 96.364 110 4 0 5251 5360 617823366 617823475 1.190000e-41 182.0
30 TraesCS3A01G255400 chr4D 97.196 107 3 0 5254 5360 67466322 67466428 1.190000e-41 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G255400 chr3A 477332006 477337401 5395 True 3420.333333 9965 97.132667 1 5396 3 chr3A.!!$R1 5395
1 TraesCS3A01G255400 chr3D 357799926 357804620 4694 True 3199.450000 6311 87.735500 817 5252 2 chr3D.!!$R3 4435
2 TraesCS3A01G255400 chr3D 53782183 53782901 718 True 514.000000 514 80.295000 2204 2923 1 chr3D.!!$R1 719
3 TraesCS3A01G255400 chr3B 459444497 459451063 6566 True 2153.933333 6144 88.966333 28 5249 3 chr3B.!!$R1 5221
4 TraesCS3A01G255400 chr4A 137108083 137109813 1730 True 2477.000000 2477 92.571000 3042 4773 1 chr4A.!!$R1 1731
5 TraesCS3A01G255400 chr4A 595391846 595392366 520 False 549.000000 549 85.634000 1671 2206 1 chr4A.!!$F2 535
6 TraesCS3A01G255400 chr2B 13324731 13325788 1057 True 466.000000 549 83.105500 1671 2758 2 chr2B.!!$R1 1087
7 TraesCS3A01G255400 chr2D 595031700 595032526 826 False 544.000000 544 79.206000 2092 2920 1 chr2D.!!$F1 828
8 TraesCS3A01G255400 chr2D 74143450 74144168 718 True 503.000000 503 80.027000 2204 2923 1 chr2D.!!$R1 719
9 TraesCS3A01G255400 chrUn 79580175 79580892 717 True 531.000000 531 80.723000 2204 2923 1 chrUn.!!$R1 719
10 TraesCS3A01G255400 chr7D 221986483 221987202 719 False 510.000000 510 80.187000 2204 2923 1 chr7D.!!$F1 719
11 TraesCS3A01G255400 chr7D 541412478 541413356 878 True 415.000000 431 85.167000 1865 2758 2 chr7D.!!$R2 893
12 TraesCS3A01G255400 chr1D 319560521 319561239 718 True 508.000000 508 80.161000 2204 2923 1 chr1D.!!$R1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 279 0.030235 GGAAAACACCGAGTTGCCAC 59.970 55.000 0.00 0.0 41.19 5.01 F
919 1849 0.244994 CCGCTGAGCAACTAGACAGT 59.755 55.000 4.88 0.0 36.19 3.55 F
1047 2484 0.624795 AAACTGATCCCCTCCCTCCC 60.625 60.000 0.00 0.0 0.00 4.30 F
1090 2527 0.692756 CCCCTTCCTCTTCCTCCTCC 60.693 65.000 0.00 0.0 0.00 4.30 F
1519 2990 1.508632 TACGAGCTGTGTGCCTTTTC 58.491 50.000 0.00 0.0 44.23 2.29 F
1827 3300 2.019156 GCAAGAGGGTAAGGTGGATGC 61.019 57.143 0.00 0.0 0.00 3.91 F
2650 4158 2.364632 TGCTCCCGGTATTGACATTTG 58.635 47.619 0.00 0.0 0.00 2.32 F
2982 4492 2.450476 CTGCCCTTTTGCTACCAAGAT 58.550 47.619 0.00 0.0 31.52 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1088 2525 0.996762 GGAGGAGAGGAGAGAGGGGA 60.997 65.000 0.0 0.0 0.00 4.81 R
2480 3963 0.037975 CCAGTTGCACCCAATTGCTC 60.038 55.000 0.0 0.0 43.41 4.26 R
2954 4464 0.961753 GCAAAAGGGCAGCACTAAGT 59.038 50.000 0.0 0.0 0.00 2.24 R
3049 4559 5.476254 TGTATGAGACTGAGATCTAGCATGG 59.524 44.000 0.0 0.0 0.00 3.66 R
3491 5009 2.017049 AGCTCACAGGAAAACACACAC 58.983 47.619 0.0 0.0 0.00 3.82 R
3549 5067 0.957888 GCAGGGAGCAGGTTCTTCAC 60.958 60.000 0.0 0.0 44.79 3.18 R
3943 5462 0.884704 TCTGCCGTCTTGCTTTCCAC 60.885 55.000 0.0 0.0 0.00 4.02 R
4872 6405 0.109132 GAGAAATGCAGCGGTTTGGG 60.109 55.000 0.0 0.0 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.816134 AAAAACAAACAAACAAATGGCTCT 57.184 29.167 0.00 0.00 0.00 4.09
25 26 7.913674 AAAAACAAACAAACAAATGGCTCTA 57.086 28.000 0.00 0.00 0.00 2.43
26 27 7.913674 AAAACAAACAAACAAATGGCTCTAA 57.086 28.000 0.00 0.00 0.00 2.10
33 34 5.418840 ACAAACAAATGGCTCTAATACCAGG 59.581 40.000 0.00 0.00 39.88 4.45
69 70 2.028748 TCAGTTTCTAACGTACCAGCCC 60.029 50.000 0.00 0.00 36.23 5.19
70 71 2.028385 CAGTTTCTAACGTACCAGCCCT 60.028 50.000 0.00 0.00 36.23 5.19
117 125 3.375299 CAGCCGTTTTTAGATCAGGGAAG 59.625 47.826 0.00 0.00 0.00 3.46
118 126 2.683362 GCCGTTTTTAGATCAGGGAAGG 59.317 50.000 0.00 0.00 0.00 3.46
119 127 3.279434 CCGTTTTTAGATCAGGGAAGGG 58.721 50.000 0.00 0.00 0.00 3.95
120 128 3.054655 CCGTTTTTAGATCAGGGAAGGGA 60.055 47.826 0.00 0.00 0.00 4.20
121 129 4.566907 CCGTTTTTAGATCAGGGAAGGGAA 60.567 45.833 0.00 0.00 0.00 3.97
135 143 2.025156 GGAATTCGCATGCAGCCG 59.975 61.111 19.57 0.57 41.38 5.52
159 167 2.072298 GAGCTGAGCAAGTTGTGGTAG 58.928 52.381 7.39 0.12 38.34 3.18
168 176 3.861840 CAAGTTGTGGTAGATGGACGAT 58.138 45.455 0.00 0.00 0.00 3.73
171 179 4.533815 AGTTGTGGTAGATGGACGATAGA 58.466 43.478 0.00 0.00 41.38 1.98
177 185 2.493713 AGATGGACGATAGACAACGC 57.506 50.000 0.00 0.00 41.38 4.84
183 191 2.357009 GGACGATAGACAACGCTCCTAA 59.643 50.000 0.00 0.00 41.38 2.69
184 192 3.181493 GGACGATAGACAACGCTCCTAAA 60.181 47.826 0.00 0.00 41.38 1.85
185 193 4.499357 GGACGATAGACAACGCTCCTAAAT 60.499 45.833 0.00 0.00 41.38 1.40
186 194 5.278169 GGACGATAGACAACGCTCCTAAATA 60.278 44.000 0.00 0.00 41.38 1.40
192 200 4.098196 AGACAACGCTCCTAAATAGAGGTC 59.902 45.833 0.00 0.00 37.88 3.85
196 204 3.967987 ACGCTCCTAAATAGAGGTCCAAT 59.032 43.478 0.00 0.00 37.88 3.16
199 207 4.348168 GCTCCTAAATAGAGGTCCAATGGA 59.652 45.833 0.00 0.00 37.88 3.41
206 214 4.115199 GGTCCAATGGAGCGCCCT 62.115 66.667 16.19 0.00 40.45 5.19
216 224 3.080121 AGCGCCCTCCTCCTCTTG 61.080 66.667 2.29 0.00 0.00 3.02
221 229 0.391793 GCCCTCCTCCTCTTGAAACG 60.392 60.000 0.00 0.00 0.00 3.60
233 241 2.349275 TCTTGAAACGAAACGAAACGCT 59.651 40.909 0.00 0.00 0.00 5.07
238 246 1.154908 CGAAACGAAACGCTCCGTG 60.155 57.895 0.00 0.00 39.99 4.94
261 269 2.315901 CGAATTTGCTCGGAAAACACC 58.684 47.619 0.00 0.00 35.14 4.16
271 279 0.030235 GGAAAACACCGAGTTGCCAC 59.970 55.000 0.00 0.00 41.19 5.01
272 280 0.316689 GAAAACACCGAGTTGCCACG 60.317 55.000 0.00 0.00 41.19 4.94
273 281 2.331019 AAAACACCGAGTTGCCACGC 62.331 55.000 0.00 0.00 41.19 5.34
276 284 1.666553 CACCGAGTTGCCACGCTTA 60.667 57.895 0.00 0.00 0.00 3.09
277 285 1.019278 CACCGAGTTGCCACGCTTAT 61.019 55.000 0.00 0.00 0.00 1.73
278 286 0.739813 ACCGAGTTGCCACGCTTATC 60.740 55.000 0.00 0.00 0.00 1.75
279 287 0.460284 CCGAGTTGCCACGCTTATCT 60.460 55.000 0.00 0.00 0.00 1.98
281 289 1.291132 GAGTTGCCACGCTTATCTCC 58.709 55.000 0.00 0.00 0.00 3.71
282 290 0.460284 AGTTGCCACGCTTATCTCCG 60.460 55.000 0.00 0.00 0.00 4.63
283 291 0.739813 GTTGCCACGCTTATCTCCGT 60.740 55.000 0.00 0.00 38.35 4.69
287 295 2.159014 TGCCACGCTTATCTCCGTAAAT 60.159 45.455 0.00 0.00 35.69 1.40
290 299 4.116961 CCACGCTTATCTCCGTAAATGAA 58.883 43.478 0.00 0.00 35.69 2.57
293 302 4.565564 ACGCTTATCTCCGTAAATGAACAC 59.434 41.667 0.00 0.00 35.69 3.32
298 307 7.168637 GCTTATCTCCGTAAATGAACACGATAA 59.831 37.037 0.00 0.00 40.56 1.75
304 313 9.580916 CTCCGTAAATGAACACGATAATATTTG 57.419 33.333 0.00 0.00 40.56 2.32
312 321 3.059597 ACACGATAATATTTGAGCTGCGC 60.060 43.478 0.00 0.00 0.00 6.09
314 323 2.472886 CGATAATATTTGAGCTGCGCCG 60.473 50.000 4.18 0.00 0.00 6.46
335 351 5.704888 CCGTGAAAATGTTATAGTTTGGCA 58.295 37.500 0.00 0.00 0.00 4.92
390 707 8.397906 ACATTATGTTTTCAACTCATCCATACG 58.602 33.333 0.00 0.00 0.00 3.06
393 710 6.869315 TGTTTTCAACTCATCCATACGAAA 57.131 33.333 0.00 0.00 0.00 3.46
401 718 9.878667 TCAACTCATCCATACGAAAATAAGTTA 57.121 29.630 0.00 0.00 0.00 2.24
420 737 7.573968 AAGTTATACATTTGAGATTCTGGCC 57.426 36.000 0.00 0.00 0.00 5.36
421 738 6.662755 AGTTATACATTTGAGATTCTGGCCA 58.337 36.000 4.71 4.71 0.00 5.36
422 739 7.293073 AGTTATACATTTGAGATTCTGGCCAT 58.707 34.615 5.51 0.00 0.00 4.40
434 751 2.083774 TCTGGCCATGCTTAAAAGTCG 58.916 47.619 5.51 0.00 0.00 4.18
435 752 0.525761 TGGCCATGCTTAAAAGTCGC 59.474 50.000 0.00 0.00 0.00 5.19
438 755 2.422127 GGCCATGCTTAAAAGTCGCTTA 59.578 45.455 0.00 0.00 0.00 3.09
462 779 1.293179 GAACCCAAGGGCATTGCAC 59.707 57.895 11.39 6.93 37.60 4.57
464 781 3.762247 CCCAAGGGCATTGCACGG 61.762 66.667 11.39 4.37 36.86 4.94
484 801 6.148948 CACGGCAAGATTCACAAAATTAGAA 58.851 36.000 0.00 0.00 0.00 2.10
486 803 6.016276 ACGGCAAGATTCACAAAATTAGAACT 60.016 34.615 0.00 0.00 0.00 3.01
489 806 8.730680 GGCAAGATTCACAAAATTAGAACTCTA 58.269 33.333 0.00 0.00 0.00 2.43
510 828 9.314321 ACTCTATACATTTGACATAAAACTCGG 57.686 33.333 0.00 0.00 0.00 4.63
516 835 6.370718 ACATTTGACATAAAACTCGGGACTAC 59.629 38.462 0.00 0.00 0.00 2.73
517 836 4.460948 TGACATAAAACTCGGGACTACC 57.539 45.455 0.00 0.00 0.00 3.18
524 843 2.537633 ACTCGGGACTACCACCAATA 57.462 50.000 0.00 0.00 40.22 1.90
530 849 3.640029 CGGGACTACCACCAATACTACAT 59.360 47.826 0.00 0.00 40.22 2.29
531 850 4.500887 CGGGACTACCACCAATACTACATG 60.501 50.000 0.00 0.00 40.22 3.21
532 851 4.377897 GGACTACCACCAATACTACATGC 58.622 47.826 0.00 0.00 35.97 4.06
538 857 6.996180 ACCACCAATACTACATGCTACTAT 57.004 37.500 0.00 0.00 0.00 2.12
541 860 7.039644 ACCACCAATACTACATGCTACTATCTC 60.040 40.741 0.00 0.00 0.00 2.75
543 862 8.580720 CACCAATACTACATGCTACTATCTCTT 58.419 37.037 0.00 0.00 0.00 2.85
549 868 8.770010 ACTACATGCTACTATCTCTTTAAGGT 57.230 34.615 0.00 0.00 0.00 3.50
582 1198 3.699038 ACAATGTTTGCTAACACCACTGT 59.301 39.130 15.90 13.14 46.38 3.55
587 1203 6.268825 TGTTTGCTAACACCACTGTAAAAA 57.731 33.333 9.74 0.00 39.29 1.94
588 1204 6.868622 TGTTTGCTAACACCACTGTAAAAAT 58.131 32.000 9.74 0.00 39.29 1.82
589 1205 7.324178 TGTTTGCTAACACCACTGTAAAAATT 58.676 30.769 9.74 0.00 39.29 1.82
590 1206 7.489757 TGTTTGCTAACACCACTGTAAAAATTC 59.510 33.333 9.74 0.00 39.29 2.17
592 1208 7.283625 TGCTAACACCACTGTAAAAATTCAT 57.716 32.000 0.00 0.00 0.00 2.57
614 1233 8.725405 TCATACTTTCTAACTTGTTTGACACA 57.275 30.769 0.00 0.00 0.00 3.72
615 1234 9.337396 TCATACTTTCTAACTTGTTTGACACAT 57.663 29.630 0.00 0.00 34.43 3.21
625 1244 7.232945 ACTTGTTTGACACATAAATGTTTGC 57.767 32.000 0.00 0.00 39.39 3.68
628 1247 8.932945 TTGTTTGACACATAAATGTTTGCTAA 57.067 26.923 0.00 0.00 39.39 3.09
629 1248 8.346476 TGTTTGACACATAAATGTTTGCTAAC 57.654 30.769 3.93 3.93 39.39 2.34
631 1250 7.922505 TTGACACATAAATGTTTGCTAACAC 57.077 32.000 15.90 1.23 46.38 3.32
632 1251 6.442952 TGACACATAAATGTTTGCTAACACC 58.557 36.000 15.90 0.00 46.38 4.16
633 1252 6.039829 TGACACATAAATGTTTGCTAACACCA 59.960 34.615 15.90 4.89 46.38 4.17
634 1253 6.212955 ACACATAAATGTTTGCTAACACCAC 58.787 36.000 15.90 0.00 46.38 4.16
636 1255 6.363088 CACATAAATGTTTGCTAACACCACTG 59.637 38.462 15.90 13.03 46.38 3.66
638 1257 7.229707 ACATAAATGTTTGCTAACACCACTGTA 59.770 33.333 15.90 0.73 46.38 2.74
639 1258 6.458232 AAATGTTTGCTAACACCACTGTAA 57.542 33.333 15.90 0.00 46.38 2.41
640 1259 6.458232 AATGTTTGCTAACACCACTGTAAA 57.542 33.333 15.90 0.00 46.38 2.01
641 1260 5.899120 TGTTTGCTAACACCACTGTAAAA 57.101 34.783 9.74 0.00 39.29 1.52
642 1261 6.268825 TGTTTGCTAACACCACTGTAAAAA 57.731 33.333 9.74 0.00 39.29 1.94
643 1262 6.868622 TGTTTGCTAACACCACTGTAAAAAT 58.131 32.000 9.74 0.00 39.29 1.82
645 1264 7.489757 TGTTTGCTAACACCACTGTAAAAATTC 59.510 33.333 9.74 0.00 39.29 2.17
646 1265 6.701145 TGCTAACACCACTGTAAAAATTCA 57.299 33.333 0.00 0.00 0.00 2.57
647 1266 7.283625 TGCTAACACCACTGTAAAAATTCAT 57.716 32.000 0.00 0.00 0.00 2.57
649 1268 8.293867 TGCTAACACCACTGTAAAAATTCATAC 58.706 33.333 0.00 0.00 0.00 2.39
650 1269 8.512138 GCTAACACCACTGTAAAAATTCATACT 58.488 33.333 3.22 0.00 0.00 2.12
653 1272 9.744468 AACACCACTGTAAAAATTCATACTTTC 57.256 29.630 3.22 0.00 0.00 2.62
654 1273 9.131791 ACACCACTGTAAAAATTCATACTTTCT 57.868 29.630 3.22 0.00 0.00 2.52
669 1288 8.725405 TCATACTTTCTAACTTGTTTGACACA 57.275 30.769 0.00 0.00 0.00 3.72
670 1289 9.337396 TCATACTTTCTAACTTGTTTGACACAT 57.663 29.630 0.00 0.00 34.43 3.21
673 1292 8.500753 ACTTTCTAACTTGTTTGACACATACA 57.499 30.769 0.00 0.00 34.43 2.29
674 1293 8.952278 ACTTTCTAACTTGTTTGACACATACAA 58.048 29.630 0.00 0.00 35.00 2.41
675 1294 9.950680 CTTTCTAACTTGTTTGACACATACAAT 57.049 29.630 7.83 0.00 35.51 2.71
676 1295 9.729023 TTTCTAACTTGTTTGACACATACAATG 57.271 29.630 7.83 5.96 35.51 2.82
677 1296 8.445275 TCTAACTTGTTTGACACATACAATGT 57.555 30.769 7.83 0.00 46.22 2.71
678 1297 8.898761 TCTAACTTGTTTGACACATACAATGTT 58.101 29.630 16.77 16.77 42.70 2.71
679 1298 9.515020 CTAACTTGTTTGACACATACAATGTTT 57.485 29.630 17.25 11.01 42.70 2.83
680 1299 7.754069 ACTTGTTTGACACATACAATGTTTG 57.246 32.000 2.33 2.33 42.70 2.93
681 1300 6.255453 ACTTGTTTGACACATACAATGTTTGC 59.745 34.615 3.78 0.00 42.70 3.68
682 1301 5.900425 TGTTTGACACATACAATGTTTGCT 58.100 33.333 3.78 0.00 42.70 3.91
683 1302 7.032377 TGTTTGACACATACAATGTTTGCTA 57.968 32.000 3.78 0.00 42.70 3.49
684 1303 7.484140 TGTTTGACACATACAATGTTTGCTAA 58.516 30.769 3.78 0.00 42.70 3.09
685 1304 7.433719 TGTTTGACACATACAATGTTTGCTAAC 59.566 33.333 3.93 3.93 42.70 2.34
687 1306 6.434596 TGACACATACAATGTTTGCTAACAC 58.565 36.000 15.90 0.54 46.38 3.32
688 1307 6.262049 TGACACATACAATGTTTGCTAACACT 59.738 34.615 15.90 2.07 46.38 3.55
689 1308 7.442666 TGACACATACAATGTTTGCTAACACTA 59.557 33.333 15.90 6.62 46.38 2.74
690 1309 7.581476 ACACATACAATGTTTGCTAACACTAC 58.419 34.615 15.90 0.00 46.38 2.73
691 1310 7.444183 ACACATACAATGTTTGCTAACACTACT 59.556 33.333 15.90 0.00 46.38 2.57
692 1311 7.746034 CACATACAATGTTTGCTAACACTACTG 59.254 37.037 15.90 12.59 46.38 2.74
693 1312 7.444183 ACATACAATGTTTGCTAACACTACTGT 59.556 33.333 15.90 16.78 46.38 3.55
694 1313 8.931775 CATACAATGTTTGCTAACACTACTGTA 58.068 33.333 15.90 18.07 46.38 2.74
695 1314 7.795482 ACAATGTTTGCTAACACTACTGTAA 57.205 32.000 15.90 0.00 46.38 2.41
696 1315 8.215926 ACAATGTTTGCTAACACTACTGTAAA 57.784 30.769 15.90 0.00 46.38 2.01
697 1316 8.679100 ACAATGTTTGCTAACACTACTGTAAAA 58.321 29.630 15.90 0.00 46.38 1.52
698 1317 9.509855 CAATGTTTGCTAACACTACTGTAAAAA 57.490 29.630 15.90 0.00 46.38 1.94
731 1350 9.492973 TCATTTTTCTATGAATCATCGCAGATA 57.507 29.630 0.00 0.00 34.55 1.98
737 1356 8.661352 TCTATGAATCATCGCAGATAAAACAA 57.339 30.769 0.00 0.00 45.12 2.83
743 1362 8.792831 AATCATCGCAGATAAAACAAATCATC 57.207 30.769 0.00 0.00 45.12 2.92
746 1365 8.124823 TCATCGCAGATAAAACAAATCATCTTC 58.875 33.333 0.00 0.00 45.12 2.87
780 1400 8.943909 AAATACGATAGCCATATAAACTAGCC 57.056 34.615 0.00 0.00 42.67 3.93
781 1401 7.899648 ATACGATAGCCATATAAACTAGCCT 57.100 36.000 0.00 0.00 42.67 4.58
783 1403 7.098074 ACGATAGCCATATAAACTAGCCTAC 57.902 40.000 0.00 0.00 42.67 3.18
785 1405 7.148052 ACGATAGCCATATAAACTAGCCTACAG 60.148 40.741 0.00 0.00 42.67 2.74
786 1406 7.067129 CGATAGCCATATAAACTAGCCTACAGA 59.933 40.741 0.00 0.00 0.00 3.41
787 1407 6.996180 AGCCATATAAACTAGCCTACAGAA 57.004 37.500 0.00 0.00 0.00 3.02
788 1408 7.374975 AGCCATATAAACTAGCCTACAGAAA 57.625 36.000 0.00 0.00 0.00 2.52
789 1409 7.217906 AGCCATATAAACTAGCCTACAGAAAC 58.782 38.462 0.00 0.00 0.00 2.78
798 1418 9.819267 AAACTAGCCTACAGAAACATCTTATAC 57.181 33.333 0.00 0.00 0.00 1.47
799 1419 7.953752 ACTAGCCTACAGAAACATCTTATACC 58.046 38.462 0.00 0.00 0.00 2.73
801 1421 7.380423 AGCCTACAGAAACATCTTATACCAT 57.620 36.000 0.00 0.00 0.00 3.55
802 1422 7.220030 AGCCTACAGAAACATCTTATACCATG 58.780 38.462 0.00 0.00 0.00 3.66
803 1423 6.428159 GCCTACAGAAACATCTTATACCATGG 59.572 42.308 11.19 11.19 0.00 3.66
805 1425 6.575244 ACAGAAACATCTTATACCATGGGA 57.425 37.500 18.09 8.35 0.00 4.37
806 1426 6.357367 ACAGAAACATCTTATACCATGGGAC 58.643 40.000 18.09 0.00 0.00 4.46
807 1427 5.466728 CAGAAACATCTTATACCATGGGACG 59.533 44.000 18.09 0.00 0.00 4.79
808 1428 4.351874 AACATCTTATACCATGGGACGG 57.648 45.455 18.09 1.23 0.00 4.79
809 1429 3.583228 ACATCTTATACCATGGGACGGA 58.417 45.455 18.09 7.25 0.00 4.69
810 1430 3.578716 ACATCTTATACCATGGGACGGAG 59.421 47.826 18.09 6.71 0.00 4.63
811 1431 2.605257 TCTTATACCATGGGACGGAGG 58.395 52.381 18.09 0.00 0.00 4.30
812 1432 2.090943 TCTTATACCATGGGACGGAGGT 60.091 50.000 18.09 0.00 38.14 3.85
813 1433 3.140707 TCTTATACCATGGGACGGAGGTA 59.859 47.826 18.09 0.00 40.58 3.08
814 1434 2.482414 ATACCATGGGACGGAGGTAA 57.518 50.000 18.09 0.00 39.80 2.85
815 1435 2.482414 TACCATGGGACGGAGGTAAT 57.518 50.000 18.09 0.00 33.90 1.89
816 1436 2.482414 ACCATGGGACGGAGGTAATA 57.518 50.000 18.09 0.00 31.32 0.98
817 1437 2.986050 ACCATGGGACGGAGGTAATAT 58.014 47.619 18.09 0.00 31.32 1.28
818 1438 3.323775 ACCATGGGACGGAGGTAATATT 58.676 45.455 18.09 0.00 31.32 1.28
819 1439 3.326880 ACCATGGGACGGAGGTAATATTC 59.673 47.826 18.09 0.00 31.32 1.75
820 1440 3.583086 CCATGGGACGGAGGTAATATTCT 59.417 47.826 2.85 0.00 0.00 2.40
821 1441 4.041691 CCATGGGACGGAGGTAATATTCTT 59.958 45.833 2.85 0.00 0.00 2.52
875 1495 7.406799 AAAAATGCGTTTAACTGAGGAAATG 57.593 32.000 3.90 0.00 0.00 2.32
914 1844 2.604046 ATAACCCGCTGAGCAACTAG 57.396 50.000 4.88 0.00 0.00 2.57
919 1849 0.244994 CCGCTGAGCAACTAGACAGT 59.755 55.000 4.88 0.00 36.19 3.55
922 1852 2.156504 CGCTGAGCAACTAGACAGTTTG 59.843 50.000 4.88 0.00 42.51 2.93
925 1855 4.319118 GCTGAGCAACTAGACAGTTTGTTC 60.319 45.833 0.00 0.00 42.51 3.18
927 1857 4.811024 TGAGCAACTAGACAGTTTGTTCAG 59.189 41.667 0.00 0.00 42.51 3.02
928 1858 5.023533 AGCAACTAGACAGTTTGTTCAGA 57.976 39.130 0.00 0.00 42.51 3.27
929 1859 5.615289 AGCAACTAGACAGTTTGTTCAGAT 58.385 37.500 0.00 0.00 42.51 2.90
931 1861 7.217200 AGCAACTAGACAGTTTGTTCAGATAA 58.783 34.615 0.00 0.00 42.51 1.75
932 1862 7.715249 AGCAACTAGACAGTTTGTTCAGATAAA 59.285 33.333 0.00 0.00 42.51 1.40
1044 2481 2.073776 ACAAAAACTGATCCCCTCCCT 58.926 47.619 0.00 0.00 0.00 4.20
1045 2482 2.041755 ACAAAAACTGATCCCCTCCCTC 59.958 50.000 0.00 0.00 0.00 4.30
1046 2483 1.299939 AAAACTGATCCCCTCCCTCC 58.700 55.000 0.00 0.00 0.00 4.30
1047 2484 0.624795 AAACTGATCCCCTCCCTCCC 60.625 60.000 0.00 0.00 0.00 4.30
1088 2525 0.800239 TTCCCCTTCCTCTTCCTCCT 59.200 55.000 0.00 0.00 0.00 3.69
1090 2527 0.692756 CCCCTTCCTCTTCCTCCTCC 60.693 65.000 0.00 0.00 0.00 4.30
1143 2596 3.564027 GCACCCTCGAATTCCGCG 61.564 66.667 0.00 0.00 38.37 6.46
1240 2693 2.904866 CCACCACCACCACCAACG 60.905 66.667 0.00 0.00 0.00 4.10
1371 2832 2.124278 CCCCCTCTTTAAGCCGGC 60.124 66.667 21.89 21.89 0.00 6.13
1519 2990 1.508632 TACGAGCTGTGTGCCTTTTC 58.491 50.000 0.00 0.00 44.23 2.29
1547 3018 2.872858 GCTTCCTTTCGTGCCCTATAAG 59.127 50.000 0.00 0.00 0.00 1.73
1807 3280 2.125350 GAAGCTGCTGACCGGGAG 60.125 66.667 6.32 1.66 0.00 4.30
1827 3300 2.019156 GCAAGAGGGTAAGGTGGATGC 61.019 57.143 0.00 0.00 0.00 3.91
1948 3421 2.509336 GTGATCCGGGACACAGCG 60.509 66.667 20.89 0.00 37.05 5.18
2172 3645 5.566469 TCTCATTAGGTGGGTTACTTTTGG 58.434 41.667 0.00 0.00 0.00 3.28
2306 3779 2.808543 GGTGAGTTGGTTCTGTGCTTAG 59.191 50.000 0.00 0.00 0.00 2.18
2309 3782 3.244215 TGAGTTGGTTCTGTGCTTAGGAG 60.244 47.826 0.00 0.00 0.00 3.69
2320 3793 4.460263 TGTGCTTAGGAGTGTGTTTGATT 58.540 39.130 0.00 0.00 0.00 2.57
2358 3831 5.106038 TGAGAGTGCCATTCAATCAATTGTC 60.106 40.000 5.13 0.00 41.89 3.18
2467 3949 8.854614 ATTCCCTATGCATAACTTAACATCTC 57.145 34.615 8.00 0.00 0.00 2.75
2482 3965 9.429359 ACTTAACATCTCAAATCTGTACAAGAG 57.571 33.333 0.00 0.26 38.67 2.85
2490 3973 5.183713 TCAAATCTGTACAAGAGCAATTGGG 59.816 40.000 7.72 0.00 38.67 4.12
2627 4135 7.265599 TCCACTACCCTTCTTGATAAATTGA 57.734 36.000 0.00 0.00 0.00 2.57
2650 4158 2.364632 TGCTCCCGGTATTGACATTTG 58.635 47.619 0.00 0.00 0.00 2.32
2673 4181 6.980593 TGTCATATTTAATACAAGCATGCCC 58.019 36.000 15.66 0.00 0.00 5.36
2710 4218 8.018537 TCTAGGATTAAATGTAGCAGCACTTA 57.981 34.615 0.00 0.00 0.00 2.24
2815 4323 6.553476 GCTGGGAACATATTTTAAGGGGTTAT 59.447 38.462 0.00 0.00 41.51 1.89
2841 4349 8.576442 TGAGAAAATTATGTCAGGAAGAAAACC 58.424 33.333 0.00 0.00 0.00 3.27
2857 4365 5.954335 AGAAAACCTTGAACAAGTTGTCTG 58.046 37.500 9.40 0.22 36.72 3.51
2868 4377 8.675705 TGAACAAGTTGTCTGAGATCATTTTA 57.324 30.769 9.40 0.00 0.00 1.52
2877 4386 9.685276 TTGTCTGAGATCATTTTATTATGTGGT 57.315 29.630 0.00 0.00 0.00 4.16
2897 4407 7.657336 TGTGGTCCTTAATCTTTCAATTTGTC 58.343 34.615 0.00 0.00 0.00 3.18
2923 4433 6.308015 TGACTGCTGGGTTTATTAGTACAT 57.692 37.500 0.00 0.00 0.00 2.29
2982 4492 2.450476 CTGCCCTTTTGCTACCAAGAT 58.550 47.619 0.00 0.00 31.52 2.40
3049 4559 6.653020 TCCAATATGTATGGAGGCATCATAC 58.347 40.000 17.60 17.60 41.98 2.39
3137 4647 5.462530 TGCTTAGCACTGAGTTACTTGTA 57.537 39.130 1.39 0.00 31.71 2.41
3491 5009 7.533426 TCCCAAATTTCATGTGTTTTGTTTTG 58.467 30.769 12.53 0.00 0.00 2.44
3530 5048 7.448777 TGTGAGCTTATATGAGAAGTACTAGGG 59.551 40.741 0.00 0.00 0.00 3.53
3584 5102 2.947652 CCCTGCTACATGTGGAAATCTG 59.052 50.000 14.15 0.00 0.00 2.90
3588 5106 3.202818 TGCTACATGTGGAAATCTGGGAT 59.797 43.478 14.15 0.00 0.00 3.85
3681 5199 8.521176 AGTAGTAACATACCACTCAGTTAACTG 58.479 37.037 26.60 26.60 45.08 3.16
3694 5212 2.649816 AGTTAACTGGGATCCTTGGCTT 59.350 45.455 12.58 0.00 0.00 4.35
3699 5217 4.337264 ACTGGGATCCTTGGCTTATTTT 57.663 40.909 12.58 0.00 0.00 1.82
3898 5416 6.846325 AAGTTATATTTCGTTAGCAGCCTC 57.154 37.500 0.00 0.00 0.00 4.70
3943 5462 4.094887 CAGGTACATGAATTGGAAGGAACG 59.905 45.833 0.00 0.00 0.00 3.95
4020 5539 1.135915 CTAGGCTCGTTGAGTGCTCAT 59.864 52.381 2.47 0.00 39.64 2.90
4089 5608 0.816421 CTCCACCCGTGTTTTCCGTT 60.816 55.000 0.00 0.00 0.00 4.44
4141 5660 1.201414 GTGGTTAAAATCCTGGGTGCG 59.799 52.381 0.00 0.00 0.00 5.34
4175 5694 4.650972 TTACCCCTTGTCTAGCATGTTT 57.349 40.909 0.00 0.00 0.00 2.83
4214 5733 9.515226 TCCTTGTAGCATATGAGTTAAAAAGTT 57.485 29.630 6.97 0.00 0.00 2.66
4243 5762 9.311916 TCAACAGTGAAAATTTTGGTCTTTATG 57.688 29.630 8.47 0.00 0.00 1.90
4316 5835 4.676196 GCCCTGTTACAATTTGAGATGCTG 60.676 45.833 2.79 0.00 0.00 4.41
4333 5852 5.812642 AGATGCTGTTTATCGTGGTCTTAAG 59.187 40.000 0.00 0.00 0.00 1.85
4346 5865 5.471257 GTGGTCTTAAGTAGTTCCTCACAG 58.529 45.833 1.63 0.00 0.00 3.66
4361 5880 5.121105 TCCTCACAGCATATCAGAATGTTG 58.879 41.667 0.00 0.00 42.04 3.33
4368 5887 8.400186 CACAGCATATCAGAATGTTGAATACAA 58.600 33.333 7.54 0.00 39.62 2.41
4408 5927 7.921786 TCTTGATATGGGTTACACTCTTTTG 57.078 36.000 0.00 0.00 0.00 2.44
4559 6090 5.163447 TGTCGACTTATATACCTTGCTTGCT 60.163 40.000 17.92 0.00 0.00 3.91
4574 6105 6.348376 CCTTGCTTGCTTTTTCTTTTTGTTCA 60.348 34.615 0.00 0.00 0.00 3.18
4592 6123 7.994425 TTGTTCAAATAGTTGAGCTCCATTA 57.006 32.000 18.40 1.35 44.49 1.90
4600 6131 4.401925 AGTTGAGCTCCATTACTTGCTTT 58.598 39.130 12.15 0.00 35.76 3.51
4604 6135 3.758554 GAGCTCCATTACTTGCTTTTCCA 59.241 43.478 0.87 0.00 35.76 3.53
4617 6148 4.724399 TGCTTTTCCATGGTCTTTACTCA 58.276 39.130 12.58 0.00 0.00 3.41
4678 6209 3.242446 GCTTATTCTGGCAAACTAGCGTC 60.242 47.826 0.00 0.00 34.64 5.19
4679 6210 2.472695 ATTCTGGCAAACTAGCGTCA 57.527 45.000 0.00 0.00 34.64 4.35
4680 6211 1.508632 TTCTGGCAAACTAGCGTCAC 58.491 50.000 0.00 0.00 34.64 3.67
4784 6317 2.559231 GCAAGGTTTACCCCGATTTTGA 59.441 45.455 0.00 0.00 36.42 2.69
4790 6323 3.713826 TTACCCCGATTTTGAGAAGCT 57.286 42.857 0.00 0.00 0.00 3.74
4866 6399 5.765176 TCATCTTCACAAGTTTTGAGCATG 58.235 37.500 6.16 6.16 0.00 4.06
4872 6405 5.531634 TCACAAGTTTTGAGCATGGAATTC 58.468 37.500 0.00 0.00 0.00 2.17
4893 6426 0.454957 CAAACCGCTGCATTTCTCCG 60.455 55.000 0.00 0.00 0.00 4.63
4903 6436 2.557924 TGCATTTCTCCGTGCTGAATTT 59.442 40.909 0.00 0.00 41.78 1.82
4905 6438 3.419915 CATTTCTCCGTGCTGAATTTCG 58.580 45.455 0.00 0.00 0.00 3.46
4907 6440 2.163818 TCTCCGTGCTGAATTTCGTT 57.836 45.000 0.00 0.00 0.00 3.85
4923 6456 5.957842 TTTCGTTTGGTCATTCTAAGCAT 57.042 34.783 0.00 0.00 0.00 3.79
4924 6457 5.545658 TTCGTTTGGTCATTCTAAGCATC 57.454 39.130 0.00 0.00 0.00 3.91
4955 6488 2.243957 CGTGTCAGCCTCAAACGCA 61.244 57.895 0.00 0.00 0.00 5.24
5069 6604 2.117206 AAGCGGTGGCCATCCAAA 59.883 55.556 9.72 0.00 45.53 3.28
5116 6651 1.336755 ACTTGGCCGATTTGTGTTCAC 59.663 47.619 0.00 0.00 0.00 3.18
5127 6662 1.075979 TGTGTTCACGGCGATGATCG 61.076 55.000 16.62 11.02 43.89 3.69
5146 6681 0.319641 GGCGATCCGACCTATCAACC 60.320 60.000 0.00 0.00 0.00 3.77
5149 6684 1.681793 CGATCCGACCTATCAACCACT 59.318 52.381 0.00 0.00 0.00 4.00
5214 6758 4.385088 GCCAGGAAAGATTCTTCAGATCCT 60.385 45.833 10.38 10.38 33.34 3.24
5232 6776 1.859080 CCTACCGCAGAAAACGATAGC 59.141 52.381 0.00 0.00 42.67 2.97
5249 6793 4.095185 CGATAGCCTGTAGATAGCTGGTAC 59.905 50.000 0.00 0.00 37.45 3.34
5252 6796 4.400120 AGCCTGTAGATAGCTGGTACTAC 58.600 47.826 0.00 14.27 34.99 2.73
5253 6797 4.105057 AGCCTGTAGATAGCTGGTACTACT 59.895 45.833 18.38 9.83 36.95 2.57
5254 6798 5.310068 AGCCTGTAGATAGCTGGTACTACTA 59.690 44.000 18.38 9.15 36.95 1.82
5255 6799 5.412286 GCCTGTAGATAGCTGGTACTACTAC 59.588 48.000 18.38 16.60 36.95 2.73
5256 6800 6.744906 GCCTGTAGATAGCTGGTACTACTACT 60.745 46.154 18.38 0.00 36.95 2.57
5257 6801 7.526860 GCCTGTAGATAGCTGGTACTACTACTA 60.527 44.444 18.38 10.44 36.95 1.82
5258 6802 7.818930 CCTGTAGATAGCTGGTACTACTACTAC 59.181 44.444 18.38 0.00 36.95 2.73
5259 6803 7.675062 TGTAGATAGCTGGTACTACTACTACC 58.325 42.308 18.38 0.00 36.95 3.18
5260 6804 7.512058 TGTAGATAGCTGGTACTACTACTACCT 59.488 40.741 18.38 4.47 36.95 3.08
5261 6805 7.008021 AGATAGCTGGTACTACTACTACCTC 57.992 44.000 0.00 0.00 35.54 3.85
5262 6806 6.788957 AGATAGCTGGTACTACTACTACCTCT 59.211 42.308 0.00 0.00 35.54 3.69
5263 6807 5.038651 AGCTGGTACTACTACTACCTCTG 57.961 47.826 0.00 0.00 35.54 3.35
5264 6808 4.474287 AGCTGGTACTACTACTACCTCTGT 59.526 45.833 0.00 0.00 35.54 3.41
5265 6809 5.044993 AGCTGGTACTACTACTACCTCTGTT 60.045 44.000 0.00 0.00 35.54 3.16
5266 6810 5.296531 GCTGGTACTACTACTACCTCTGTTC 59.703 48.000 0.00 0.00 35.54 3.18
5267 6811 6.378661 TGGTACTACTACTACCTCTGTTCA 57.621 41.667 0.00 0.00 35.54 3.18
5268 6812 6.176183 TGGTACTACTACTACCTCTGTTCAC 58.824 44.000 0.00 0.00 35.54 3.18
5269 6813 6.013032 TGGTACTACTACTACCTCTGTTCACT 60.013 42.308 0.00 0.00 35.54 3.41
5270 6814 6.883756 GGTACTACTACTACCTCTGTTCACTT 59.116 42.308 0.00 0.00 32.23 3.16
5271 6815 7.392953 GGTACTACTACTACCTCTGTTCACTTT 59.607 40.741 0.00 0.00 32.23 2.66
5272 6816 7.836479 ACTACTACTACCTCTGTTCACTTTT 57.164 36.000 0.00 0.00 0.00 2.27
5273 6817 8.930846 ACTACTACTACCTCTGTTCACTTTTA 57.069 34.615 0.00 0.00 0.00 1.52
5274 6818 9.531158 ACTACTACTACCTCTGTTCACTTTTAT 57.469 33.333 0.00 0.00 0.00 1.40
5280 6824 8.027771 ACTACCTCTGTTCACTTTTATAAGACG 58.972 37.037 0.00 0.00 35.30 4.18
5281 6825 6.756221 ACCTCTGTTCACTTTTATAAGACGT 58.244 36.000 0.00 0.00 35.30 4.34
5282 6826 7.215085 ACCTCTGTTCACTTTTATAAGACGTT 58.785 34.615 0.00 0.00 35.30 3.99
5283 6827 7.713942 ACCTCTGTTCACTTTTATAAGACGTTT 59.286 33.333 0.00 0.00 35.30 3.60
5284 6828 8.557029 CCTCTGTTCACTTTTATAAGACGTTTT 58.443 33.333 0.00 0.00 35.30 2.43
5297 6841 9.917129 TTATAAGACGTTTTAGACATTCAGACA 57.083 29.630 4.75 0.00 0.00 3.41
5298 6842 6.526566 AAGACGTTTTAGACATTCAGACAC 57.473 37.500 0.00 0.00 0.00 3.67
5299 6843 5.844004 AGACGTTTTAGACATTCAGACACT 58.156 37.500 0.00 0.00 0.00 3.55
5300 6844 5.692204 AGACGTTTTAGACATTCAGACACTG 59.308 40.000 0.00 0.00 0.00 3.66
5301 6845 5.357257 ACGTTTTAGACATTCAGACACTGT 58.643 37.500 0.00 0.00 32.61 3.55
5302 6846 5.462398 ACGTTTTAGACATTCAGACACTGTC 59.538 40.000 0.38 0.38 39.63 3.51
5303 6847 5.107453 CGTTTTAGACATTCAGACACTGTCC 60.107 44.000 5.51 0.00 40.08 4.02
5304 6848 5.545063 TTTAGACATTCAGACACTGTCCA 57.455 39.130 5.51 0.00 40.08 4.02
5305 6849 5.545063 TTAGACATTCAGACACTGTCCAA 57.455 39.130 5.51 0.00 40.08 3.53
5306 6850 4.422073 AGACATTCAGACACTGTCCAAA 57.578 40.909 5.51 1.37 40.08 3.28
5307 6851 4.780815 AGACATTCAGACACTGTCCAAAA 58.219 39.130 5.51 0.00 40.08 2.44
5308 6852 4.576463 AGACATTCAGACACTGTCCAAAAC 59.424 41.667 5.51 0.00 40.08 2.43
5309 6853 4.269183 ACATTCAGACACTGTCCAAAACA 58.731 39.130 5.51 0.00 36.18 2.83
5321 6865 4.992688 TGTCCAAAACAGTACAAAGCAAG 58.007 39.130 0.00 0.00 32.81 4.01
5322 6866 3.796717 GTCCAAAACAGTACAAAGCAAGC 59.203 43.478 0.00 0.00 0.00 4.01
5323 6867 3.699038 TCCAAAACAGTACAAAGCAAGCT 59.301 39.130 0.00 0.00 0.00 3.74
5324 6868 3.798337 CCAAAACAGTACAAAGCAAGCTG 59.202 43.478 0.00 0.00 0.00 4.24
5325 6869 4.423732 CAAAACAGTACAAAGCAAGCTGT 58.576 39.130 0.00 0.00 41.51 4.40
5326 6870 3.971032 AACAGTACAAAGCAAGCTGTC 57.029 42.857 0.00 0.00 39.19 3.51
5327 6871 3.199880 ACAGTACAAAGCAAGCTGTCT 57.800 42.857 0.00 0.00 35.78 3.41
5328 6872 2.874701 ACAGTACAAAGCAAGCTGTCTG 59.125 45.455 0.00 0.00 35.78 3.51
5329 6873 3.133691 CAGTACAAAGCAAGCTGTCTGA 58.866 45.455 0.00 0.00 0.00 3.27
5330 6874 3.561310 CAGTACAAAGCAAGCTGTCTGAA 59.439 43.478 0.00 0.00 0.00 3.02
5331 6875 4.035558 CAGTACAAAGCAAGCTGTCTGAAA 59.964 41.667 0.00 0.00 0.00 2.69
5332 6876 3.427161 ACAAAGCAAGCTGTCTGAAAC 57.573 42.857 0.00 0.00 0.00 2.78
5333 6877 2.223340 ACAAAGCAAGCTGTCTGAAACG 60.223 45.455 0.00 0.00 0.00 3.60
5334 6878 1.668419 AAGCAAGCTGTCTGAAACGT 58.332 45.000 0.00 0.00 0.00 3.99
5335 6879 1.221414 AGCAAGCTGTCTGAAACGTC 58.779 50.000 0.00 0.00 0.00 4.34
5336 6880 1.202580 AGCAAGCTGTCTGAAACGTCT 60.203 47.619 0.00 0.00 0.00 4.18
5337 6881 1.599542 GCAAGCTGTCTGAAACGTCTT 59.400 47.619 0.00 0.00 0.00 3.01
5338 6882 2.800544 GCAAGCTGTCTGAAACGTCTTA 59.199 45.455 0.00 0.00 0.00 2.10
5339 6883 3.363084 GCAAGCTGTCTGAAACGTCTTAC 60.363 47.826 0.00 0.00 0.00 2.34
5340 6884 3.728076 AGCTGTCTGAAACGTCTTACA 57.272 42.857 0.00 0.00 0.00 2.41
5341 6885 4.054780 AGCTGTCTGAAACGTCTTACAA 57.945 40.909 0.00 0.00 0.00 2.41
5342 6886 4.439057 AGCTGTCTGAAACGTCTTACAAA 58.561 39.130 0.00 0.00 0.00 2.83
5343 6887 4.873827 AGCTGTCTGAAACGTCTTACAAAA 59.126 37.500 0.00 0.00 0.00 2.44
5344 6888 5.353123 AGCTGTCTGAAACGTCTTACAAAAA 59.647 36.000 0.00 0.00 0.00 1.94
5345 6889 5.451342 GCTGTCTGAAACGTCTTACAAAAAC 59.549 40.000 0.00 0.00 0.00 2.43
5346 6890 6.483385 TGTCTGAAACGTCTTACAAAAACA 57.517 33.333 0.00 0.00 0.00 2.83
5347 6891 6.900189 TGTCTGAAACGTCTTACAAAAACAA 58.100 32.000 0.00 0.00 0.00 2.83
5348 6892 7.361127 TGTCTGAAACGTCTTACAAAAACAAA 58.639 30.769 0.00 0.00 0.00 2.83
5349 6893 7.324135 TGTCTGAAACGTCTTACAAAAACAAAC 59.676 33.333 0.00 0.00 0.00 2.93
5350 6894 6.520447 TCTGAAACGTCTTACAAAAACAAACG 59.480 34.615 0.00 0.00 35.00 3.60
5351 6895 5.568296 TGAAACGTCTTACAAAAACAAACGG 59.432 36.000 0.00 0.00 33.26 4.44
5352 6896 4.943142 ACGTCTTACAAAAACAAACGGA 57.057 36.364 0.00 0.00 33.26 4.69
5353 6897 4.900664 ACGTCTTACAAAAACAAACGGAG 58.099 39.130 0.00 0.00 33.26 4.63
5354 6898 4.201841 ACGTCTTACAAAAACAAACGGAGG 60.202 41.667 0.00 0.00 33.26 4.30
5355 6899 4.603985 GTCTTACAAAAACAAACGGAGGG 58.396 43.478 0.00 0.00 0.00 4.30
5356 6900 4.336153 GTCTTACAAAAACAAACGGAGGGA 59.664 41.667 0.00 0.00 0.00 4.20
5357 6901 4.577283 TCTTACAAAAACAAACGGAGGGAG 59.423 41.667 0.00 0.00 0.00 4.30
5358 6902 2.730382 ACAAAAACAAACGGAGGGAGT 58.270 42.857 0.00 0.00 0.00 3.85
5359 6903 3.888583 ACAAAAACAAACGGAGGGAGTA 58.111 40.909 0.00 0.00 0.00 2.59
5360 6904 3.881089 ACAAAAACAAACGGAGGGAGTAG 59.119 43.478 0.00 0.00 0.00 2.57
5361 6905 3.851458 AAAACAAACGGAGGGAGTAGT 57.149 42.857 0.00 0.00 0.00 2.73
5362 6906 4.961438 AAAACAAACGGAGGGAGTAGTA 57.039 40.909 0.00 0.00 0.00 1.82
5363 6907 4.961438 AAACAAACGGAGGGAGTAGTAA 57.039 40.909 0.00 0.00 0.00 2.24
5364 6908 4.961438 AACAAACGGAGGGAGTAGTAAA 57.039 40.909 0.00 0.00 0.00 2.01
5365 6909 5.494390 AACAAACGGAGGGAGTAGTAAAT 57.506 39.130 0.00 0.00 0.00 1.40
5366 6910 5.494390 ACAAACGGAGGGAGTAGTAAATT 57.506 39.130 0.00 0.00 0.00 1.82
5367 6911 5.872963 ACAAACGGAGGGAGTAGTAAATTT 58.127 37.500 0.00 0.00 0.00 1.82
5368 6912 5.936372 ACAAACGGAGGGAGTAGTAAATTTC 59.064 40.000 0.00 0.00 0.00 2.17
5369 6913 5.750352 AACGGAGGGAGTAGTAAATTTCA 57.250 39.130 0.00 0.00 0.00 2.69
5370 6914 5.952347 ACGGAGGGAGTAGTAAATTTCAT 57.048 39.130 0.00 0.00 0.00 2.57
5371 6915 6.309389 ACGGAGGGAGTAGTAAATTTCATT 57.691 37.500 0.00 0.00 0.00 2.57
5372 6916 6.718294 ACGGAGGGAGTAGTAAATTTCATTT 58.282 36.000 0.00 0.00 36.29 2.32
5373 6917 7.173032 ACGGAGGGAGTAGTAAATTTCATTTT 58.827 34.615 0.00 0.00 33.82 1.82
5374 6918 7.668469 ACGGAGGGAGTAGTAAATTTCATTTTT 59.332 33.333 0.00 0.00 33.82 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.816134 AGAGCCATTTGTTTGTTTGTTTTT 57.184 29.167 0.00 0.00 0.00 1.94
2 3 7.913674 TTAGAGCCATTTGTTTGTTTGTTTT 57.086 28.000 0.00 0.00 0.00 2.43
3 4 9.040939 GTATTAGAGCCATTTGTTTGTTTGTTT 57.959 29.630 0.00 0.00 0.00 2.83
4 5 7.655732 GGTATTAGAGCCATTTGTTTGTTTGTT 59.344 33.333 0.00 0.00 0.00 2.83
5 6 7.151976 GGTATTAGAGCCATTTGTTTGTTTGT 58.848 34.615 0.00 0.00 0.00 2.83
6 7 7.151308 TGGTATTAGAGCCATTTGTTTGTTTG 58.849 34.615 0.00 0.00 0.00 2.93
7 8 7.296628 TGGTATTAGAGCCATTTGTTTGTTT 57.703 32.000 0.00 0.00 0.00 2.83
8 9 6.071391 CCTGGTATTAGAGCCATTTGTTTGTT 60.071 38.462 0.00 0.00 33.84 2.83
9 10 5.418840 CCTGGTATTAGAGCCATTTGTTTGT 59.581 40.000 0.00 0.00 33.84 2.83
10 11 5.679638 GCCTGGTATTAGAGCCATTTGTTTG 60.680 44.000 0.00 0.00 33.84 2.93
11 12 4.402474 GCCTGGTATTAGAGCCATTTGTTT 59.598 41.667 0.00 0.00 33.84 2.83
12 13 3.954258 GCCTGGTATTAGAGCCATTTGTT 59.046 43.478 0.00 0.00 33.84 2.83
13 14 3.203040 AGCCTGGTATTAGAGCCATTTGT 59.797 43.478 0.00 0.00 33.84 2.83
14 15 3.567164 CAGCCTGGTATTAGAGCCATTTG 59.433 47.826 0.00 0.00 33.84 2.32
15 16 3.435601 CCAGCCTGGTATTAGAGCCATTT 60.436 47.826 1.39 0.00 33.84 2.32
16 17 2.107204 CCAGCCTGGTATTAGAGCCATT 59.893 50.000 1.39 0.00 33.84 3.16
17 18 1.701847 CCAGCCTGGTATTAGAGCCAT 59.298 52.381 1.39 0.00 33.84 4.40
18 19 1.131638 CCAGCCTGGTATTAGAGCCA 58.868 55.000 1.39 0.00 31.35 4.75
19 20 1.346068 CTCCAGCCTGGTATTAGAGCC 59.654 57.143 11.27 0.00 39.03 4.70
20 21 2.043227 ACTCCAGCCTGGTATTAGAGC 58.957 52.381 11.27 0.00 39.03 4.09
21 22 3.706594 TCAACTCCAGCCTGGTATTAGAG 59.293 47.826 11.27 1.73 39.03 2.43
22 23 3.719871 TCAACTCCAGCCTGGTATTAGA 58.280 45.455 11.27 1.31 39.03 2.10
23 24 4.487714 TTCAACTCCAGCCTGGTATTAG 57.512 45.455 11.27 2.93 39.03 1.73
24 25 5.192927 CAATTCAACTCCAGCCTGGTATTA 58.807 41.667 11.27 0.00 39.03 0.98
25 26 4.019174 CAATTCAACTCCAGCCTGGTATT 58.981 43.478 11.27 3.49 39.03 1.89
26 27 3.010584 ACAATTCAACTCCAGCCTGGTAT 59.989 43.478 11.27 0.00 39.03 2.73
33 34 4.276926 AGAAACTGACAATTCAACTCCAGC 59.723 41.667 0.00 0.00 0.00 4.85
69 70 4.264253 TCACCTATGGCAATTCAACTCAG 58.736 43.478 0.00 0.00 0.00 3.35
70 71 4.299586 TCACCTATGGCAATTCAACTCA 57.700 40.909 0.00 0.00 0.00 3.41
117 125 2.414594 GGCTGCATGCGAATTCCC 59.585 61.111 14.09 2.90 44.05 3.97
118 126 2.025156 CGGCTGCATGCGAATTCC 59.975 61.111 14.09 8.18 44.05 3.01
119 127 2.025156 CCGGCTGCATGCGAATTC 59.975 61.111 14.09 0.00 44.05 2.17
120 128 4.197498 GCCGGCTGCATGCGAATT 62.197 61.111 22.15 0.00 44.05 2.17
135 143 0.888285 ACAACTTGCTCAGCTCAGCC 60.888 55.000 7.30 0.00 38.80 4.85
143 151 2.637382 TCCATCTACCACAACTTGCTCA 59.363 45.455 0.00 0.00 0.00 4.26
144 152 3.003480 GTCCATCTACCACAACTTGCTC 58.997 50.000 0.00 0.00 0.00 4.26
145 153 2.612972 CGTCCATCTACCACAACTTGCT 60.613 50.000 0.00 0.00 0.00 3.91
146 154 1.732259 CGTCCATCTACCACAACTTGC 59.268 52.381 0.00 0.00 0.00 4.01
147 155 3.313012 TCGTCCATCTACCACAACTTG 57.687 47.619 0.00 0.00 0.00 3.16
148 156 4.954202 TCTATCGTCCATCTACCACAACTT 59.046 41.667 0.00 0.00 0.00 2.66
149 157 4.338682 GTCTATCGTCCATCTACCACAACT 59.661 45.833 0.00 0.00 0.00 3.16
159 167 2.386249 GAGCGTTGTCTATCGTCCATC 58.614 52.381 0.00 0.00 0.00 3.51
168 176 5.198965 ACCTCTATTTAGGAGCGTTGTCTA 58.801 41.667 0.00 0.00 39.15 2.59
171 179 3.132467 GGACCTCTATTTAGGAGCGTTGT 59.868 47.826 0.00 0.00 39.15 3.32
177 185 5.512232 GCTCCATTGGACCTCTATTTAGGAG 60.512 48.000 0.00 0.00 39.15 3.69
183 191 1.202698 GCGCTCCATTGGACCTCTATT 60.203 52.381 0.00 0.00 0.00 1.73
184 192 0.394565 GCGCTCCATTGGACCTCTAT 59.605 55.000 0.00 0.00 0.00 1.98
185 193 1.686325 GGCGCTCCATTGGACCTCTA 61.686 60.000 7.64 0.00 0.00 2.43
186 194 2.586792 GCGCTCCATTGGACCTCT 59.413 61.111 0.00 0.00 0.00 3.69
192 200 3.764160 GAGGAGGGCGCTCCATTGG 62.764 68.421 41.21 0.00 45.66 3.16
199 207 3.080121 CAAGAGGAGGAGGGCGCT 61.080 66.667 7.64 1.38 0.00 5.92
204 212 3.067833 GTTTCGTTTCAAGAGGAGGAGG 58.932 50.000 0.00 0.00 0.00 4.30
205 213 2.731976 CGTTTCGTTTCAAGAGGAGGAG 59.268 50.000 0.00 0.00 0.00 3.69
206 214 2.363038 TCGTTTCGTTTCAAGAGGAGGA 59.637 45.455 0.00 0.00 0.00 3.71
216 224 1.655587 GGAGCGTTTCGTTTCGTTTC 58.344 50.000 0.00 0.00 0.00 2.78
221 229 1.203313 CCACGGAGCGTTTCGTTTC 59.797 57.895 1.57 0.00 38.32 2.78
233 241 2.033448 AGCAAATTCGGCCACGGA 59.967 55.556 2.24 0.00 41.39 4.69
269 277 4.565166 TGTTCATTTACGGAGATAAGCGTG 59.435 41.667 0.00 0.00 0.00 5.34
271 279 4.317139 CGTGTTCATTTACGGAGATAAGCG 60.317 45.833 0.00 0.00 36.71 4.68
272 280 4.802039 TCGTGTTCATTTACGGAGATAAGC 59.198 41.667 0.00 0.00 40.48 3.09
273 281 8.570096 TTATCGTGTTCATTTACGGAGATAAG 57.430 34.615 0.00 0.00 40.48 1.73
276 284 9.706691 AATATTATCGTGTTCATTTACGGAGAT 57.293 29.630 0.00 0.00 40.48 2.75
277 285 9.537192 AAATATTATCGTGTTCATTTACGGAGA 57.463 29.630 0.00 0.00 40.48 3.71
278 286 9.580916 CAAATATTATCGTGTTCATTTACGGAG 57.419 33.333 0.00 0.00 40.48 4.63
279 287 9.315525 TCAAATATTATCGTGTTCATTTACGGA 57.684 29.630 0.00 0.00 40.48 4.69
281 289 9.092322 GCTCAAATATTATCGTGTTCATTTACG 57.908 33.333 0.00 0.00 41.38 3.18
287 295 5.276820 CGCAGCTCAAATATTATCGTGTTCA 60.277 40.000 0.00 0.00 0.00 3.18
290 299 4.715520 CGCAGCTCAAATATTATCGTGT 57.284 40.909 0.00 0.00 0.00 4.49
312 321 5.704888 TGCCAAACTATAACATTTTCACGG 58.295 37.500 0.00 0.00 0.00 4.94
373 389 9.226606 ACTTATTTTCGTATGGATGAGTTGAAA 57.773 29.630 0.00 0.00 0.00 2.69
374 390 8.786826 ACTTATTTTCGTATGGATGAGTTGAA 57.213 30.769 0.00 0.00 0.00 2.69
401 718 4.280174 GCATGGCCAGAATCTCAAATGTAT 59.720 41.667 13.05 0.00 0.00 2.29
409 726 4.400567 ACTTTTAAGCATGGCCAGAATCTC 59.599 41.667 13.05 0.00 0.00 2.75
418 735 2.636768 AAGCGACTTTTAAGCATGGC 57.363 45.000 0.00 0.00 0.00 4.40
419 736 8.128582 TCATAAATAAGCGACTTTTAAGCATGG 58.871 33.333 0.00 0.00 0.00 3.66
420 737 9.502145 TTCATAAATAAGCGACTTTTAAGCATG 57.498 29.630 0.00 0.00 0.00 4.06
421 738 9.503427 GTTCATAAATAAGCGACTTTTAAGCAT 57.497 29.630 0.00 0.00 0.00 3.79
422 739 7.966204 GGTTCATAAATAAGCGACTTTTAAGCA 59.034 33.333 0.00 0.00 0.00 3.91
434 751 3.704061 TGCCCTTGGGTTCATAAATAAGC 59.296 43.478 7.61 0.00 0.00 3.09
435 752 6.282930 CAATGCCCTTGGGTTCATAAATAAG 58.717 40.000 7.61 0.00 0.00 1.73
438 755 3.118298 GCAATGCCCTTGGGTTCATAAAT 60.118 43.478 7.61 0.00 35.25 1.40
462 779 6.381801 AGTTCTAATTTTGTGAATCTTGCCG 58.618 36.000 0.00 0.00 0.00 5.69
484 801 9.314321 CCGAGTTTTATGTCAAATGTATAGAGT 57.686 33.333 0.00 0.00 0.00 3.24
486 803 8.479689 TCCCGAGTTTTATGTCAAATGTATAGA 58.520 33.333 0.00 0.00 0.00 1.98
489 806 7.110155 AGTCCCGAGTTTTATGTCAAATGTAT 58.890 34.615 0.00 0.00 0.00 2.29
492 809 5.880054 AGTCCCGAGTTTTATGTCAAATG 57.120 39.130 0.00 0.00 0.00 2.32
509 827 4.742743 GCATGTAGTATTGGTGGTAGTCCC 60.743 50.000 0.00 0.00 0.00 4.46
510 828 4.101119 AGCATGTAGTATTGGTGGTAGTCC 59.899 45.833 0.00 0.00 0.00 3.85
516 835 7.177568 AGAGATAGTAGCATGTAGTATTGGTGG 59.822 40.741 0.00 0.00 0.00 4.61
517 836 8.116651 AGAGATAGTAGCATGTAGTATTGGTG 57.883 38.462 0.00 0.00 0.00 4.17
524 843 8.770010 ACCTTAAAGAGATAGTAGCATGTAGT 57.230 34.615 0.00 0.00 0.00 2.73
556 1172 5.767665 AGTGGTGTTAGCAAACATTGTATGA 59.232 36.000 0.00 0.00 46.84 2.15
559 1175 4.884744 ACAGTGGTGTTAGCAAACATTGTA 59.115 37.500 10.34 0.00 46.84 2.41
562 1178 6.458232 TTTACAGTGGTGTTAGCAAACATT 57.542 33.333 0.00 0.00 46.84 2.71
565 1181 7.489757 TGAATTTTTACAGTGGTGTTAGCAAAC 59.510 33.333 0.00 0.00 38.19 2.93
572 1188 9.744468 GAAAGTATGAATTTTTACAGTGGTGTT 57.256 29.630 0.00 0.00 38.19 3.32
588 1204 9.168451 TGTGTCAAACAAGTTAGAAAGTATGAA 57.832 29.630 0.00 0.00 35.24 2.57
589 1205 8.725405 TGTGTCAAACAAGTTAGAAAGTATGA 57.275 30.769 0.00 0.00 35.24 2.15
605 1224 8.265998 GTGTTAGCAAACATTTATGTGTCAAAC 58.734 33.333 0.00 0.34 46.84 2.93
608 1227 6.039829 TGGTGTTAGCAAACATTTATGTGTCA 59.960 34.615 0.00 0.00 46.84 3.58
609 1228 6.362283 GTGGTGTTAGCAAACATTTATGTGTC 59.638 38.462 0.00 0.00 46.84 3.67
610 1229 6.040391 AGTGGTGTTAGCAAACATTTATGTGT 59.960 34.615 0.00 0.00 46.84 3.72
611 1230 6.363088 CAGTGGTGTTAGCAAACATTTATGTG 59.637 38.462 0.00 0.00 46.84 3.21
613 1232 6.446318 ACAGTGGTGTTAGCAAACATTTATG 58.554 36.000 0.00 0.00 46.84 1.90
614 1233 6.648879 ACAGTGGTGTTAGCAAACATTTAT 57.351 33.333 0.00 0.00 46.84 1.40
615 1234 7.569639 TTACAGTGGTGTTAGCAAACATTTA 57.430 32.000 0.00 0.00 46.84 1.40
617 1236 6.458232 TTTACAGTGGTGTTAGCAAACATT 57.542 33.333 0.00 0.00 46.84 2.71
618 1237 6.458232 TTTTACAGTGGTGTTAGCAAACAT 57.542 33.333 0.00 0.00 46.84 2.71
619 1238 5.899120 TTTTACAGTGGTGTTAGCAAACA 57.101 34.783 0.00 0.00 43.32 2.83
620 1239 7.489757 TGAATTTTTACAGTGGTGTTAGCAAAC 59.510 33.333 0.00 0.00 38.19 2.93
621 1240 7.548097 TGAATTTTTACAGTGGTGTTAGCAAA 58.452 30.769 0.00 0.00 38.19 3.68
622 1241 7.101652 TGAATTTTTACAGTGGTGTTAGCAA 57.898 32.000 0.00 0.00 38.19 3.91
623 1242 6.701145 TGAATTTTTACAGTGGTGTTAGCA 57.299 33.333 0.00 0.00 38.19 3.49
624 1243 8.512138 AGTATGAATTTTTACAGTGGTGTTAGC 58.488 33.333 0.00 0.00 38.19 3.09
628 1247 9.131791 AGAAAGTATGAATTTTTACAGTGGTGT 57.868 29.630 0.00 0.00 41.06 4.16
643 1262 9.168451 TGTGTCAAACAAGTTAGAAAGTATGAA 57.832 29.630 0.00 0.00 35.24 2.57
647 1266 9.602568 TGTATGTGTCAAACAAGTTAGAAAGTA 57.397 29.630 0.00 0.00 43.61 2.24
649 1268 9.950680 ATTGTATGTGTCAAACAAGTTAGAAAG 57.049 29.630 0.00 0.00 43.61 2.62
650 1269 9.729023 CATTGTATGTGTCAAACAAGTTAGAAA 57.271 29.630 0.00 0.00 43.61 2.52
652 1271 8.445275 ACATTGTATGTGTCAAACAAGTTAGA 57.555 30.769 0.00 0.00 43.61 2.10
653 1272 9.515020 AAACATTGTATGTGTCAAACAAGTTAG 57.485 29.630 0.00 0.00 44.07 2.34
654 1273 9.295214 CAAACATTGTATGTGTCAAACAAGTTA 57.705 29.630 0.00 0.00 44.07 2.24
655 1274 7.201513 GCAAACATTGTATGTGTCAAACAAGTT 60.202 33.333 0.00 0.00 44.07 2.66
656 1275 6.255453 GCAAACATTGTATGTGTCAAACAAGT 59.745 34.615 0.00 0.00 44.07 3.16
657 1276 6.476380 AGCAAACATTGTATGTGTCAAACAAG 59.524 34.615 0.00 0.00 44.07 3.16
658 1277 6.336566 AGCAAACATTGTATGTGTCAAACAA 58.663 32.000 0.00 0.00 44.07 2.83
659 1278 5.900425 AGCAAACATTGTATGTGTCAAACA 58.100 33.333 0.00 0.00 44.07 2.83
660 1279 7.433719 TGTTAGCAAACATTGTATGTGTCAAAC 59.566 33.333 0.00 0.00 44.07 2.93
661 1280 7.433719 GTGTTAGCAAACATTGTATGTGTCAAA 59.566 33.333 0.00 0.00 46.84 2.69
662 1281 6.915300 GTGTTAGCAAACATTGTATGTGTCAA 59.085 34.615 0.00 0.00 46.84 3.18
663 1282 6.262049 AGTGTTAGCAAACATTGTATGTGTCA 59.738 34.615 0.00 0.00 46.84 3.58
664 1283 6.668323 AGTGTTAGCAAACATTGTATGTGTC 58.332 36.000 0.00 0.00 46.84 3.67
665 1284 6.633500 AGTGTTAGCAAACATTGTATGTGT 57.367 33.333 0.00 0.00 46.84 3.72
666 1285 7.746034 CAGTAGTGTTAGCAAACATTGTATGTG 59.254 37.037 0.00 0.00 46.84 3.21
667 1286 7.444183 ACAGTAGTGTTAGCAAACATTGTATGT 59.556 33.333 0.00 0.00 46.84 2.29
668 1287 7.806690 ACAGTAGTGTTAGCAAACATTGTATG 58.193 34.615 0.00 0.00 46.84 2.39
669 1288 7.979444 ACAGTAGTGTTAGCAAACATTGTAT 57.021 32.000 0.00 0.00 46.84 2.29
670 1289 8.890124 TTACAGTAGTGTTAGCAAACATTGTA 57.110 30.769 8.85 0.78 46.84 2.41
671 1290 7.795482 TTACAGTAGTGTTAGCAAACATTGT 57.205 32.000 8.85 1.56 46.84 2.71
672 1291 9.509855 TTTTTACAGTAGTGTTAGCAAACATTG 57.490 29.630 8.85 0.00 46.84 2.82
703 1322 9.492973 TCTGCGATGATTCATAGAAAAATGATA 57.507 29.630 10.53 0.00 35.84 2.15
704 1323 8.387190 TCTGCGATGATTCATAGAAAAATGAT 57.613 30.769 10.53 0.00 35.84 2.45
705 1324 7.790823 TCTGCGATGATTCATAGAAAAATGA 57.209 32.000 10.53 0.00 34.07 2.57
709 1328 9.935682 GTTTTATCTGCGATGATTCATAGAAAA 57.064 29.630 10.53 3.58 0.00 2.29
710 1329 9.108284 TGTTTTATCTGCGATGATTCATAGAAA 57.892 29.630 10.53 0.00 0.00 2.52
711 1330 8.661352 TGTTTTATCTGCGATGATTCATAGAA 57.339 30.769 10.53 0.00 0.00 2.10
712 1331 8.661352 TTGTTTTATCTGCGATGATTCATAGA 57.339 30.769 10.53 5.66 0.00 1.98
713 1332 9.888878 ATTTGTTTTATCTGCGATGATTCATAG 57.111 29.630 0.00 0.45 0.00 2.23
714 1333 9.882996 GATTTGTTTTATCTGCGATGATTCATA 57.117 29.630 0.00 0.00 0.00 2.15
715 1334 8.407832 TGATTTGTTTTATCTGCGATGATTCAT 58.592 29.630 0.00 0.00 0.00 2.57
716 1335 7.760437 TGATTTGTTTTATCTGCGATGATTCA 58.240 30.769 0.00 0.00 0.00 2.57
717 1336 8.792831 ATGATTTGTTTTATCTGCGATGATTC 57.207 30.769 0.00 0.00 0.00 2.52
718 1337 8.627403 AGATGATTTGTTTTATCTGCGATGATT 58.373 29.630 0.00 0.00 0.00 2.57
719 1338 8.162878 AGATGATTTGTTTTATCTGCGATGAT 57.837 30.769 0.00 0.00 0.00 2.45
720 1339 7.558161 AGATGATTTGTTTTATCTGCGATGA 57.442 32.000 0.00 0.00 0.00 2.92
721 1340 7.911727 TGAAGATGATTTGTTTTATCTGCGATG 59.088 33.333 0.00 0.00 29.42 3.84
722 1341 7.988737 TGAAGATGATTTGTTTTATCTGCGAT 58.011 30.769 0.00 0.00 29.42 4.58
723 1342 7.376435 TGAAGATGATTTGTTTTATCTGCGA 57.624 32.000 0.00 0.00 29.42 5.10
724 1343 8.451687 TTTGAAGATGATTTGTTTTATCTGCG 57.548 30.769 0.00 0.00 29.42 5.18
760 1380 7.067129 TCTGTAGGCTAGTTTATATGGCTATCG 59.933 40.741 0.00 0.00 39.22 2.92
762 1382 8.666129 TTCTGTAGGCTAGTTTATATGGCTAT 57.334 34.615 0.00 0.00 39.22 2.97
773 1393 8.422566 GGTATAAGATGTTTCTGTAGGCTAGTT 58.577 37.037 0.00 0.00 30.72 2.24
778 1398 6.428159 CCATGGTATAAGATGTTTCTGTAGGC 59.572 42.308 2.57 0.00 30.72 3.93
779 1399 6.936900 CCCATGGTATAAGATGTTTCTGTAGG 59.063 42.308 11.73 0.00 30.72 3.18
780 1400 7.657761 GTCCCATGGTATAAGATGTTTCTGTAG 59.342 40.741 11.73 0.00 30.72 2.74
781 1401 7.506114 GTCCCATGGTATAAGATGTTTCTGTA 58.494 38.462 11.73 0.00 30.72 2.74
783 1403 5.466728 CGTCCCATGGTATAAGATGTTTCTG 59.533 44.000 11.73 0.00 30.72 3.02
785 1405 4.755123 CCGTCCCATGGTATAAGATGTTTC 59.245 45.833 11.73 0.00 0.00 2.78
786 1406 4.410883 TCCGTCCCATGGTATAAGATGTTT 59.589 41.667 11.73 0.00 0.00 2.83
787 1407 3.971305 TCCGTCCCATGGTATAAGATGTT 59.029 43.478 11.73 0.00 0.00 2.71
788 1408 3.578716 CTCCGTCCCATGGTATAAGATGT 59.421 47.826 11.73 0.00 0.00 3.06
789 1409 3.055819 CCTCCGTCCCATGGTATAAGATG 60.056 52.174 11.73 5.62 0.00 2.90
795 1415 2.482414 TTACCTCCGTCCCATGGTAT 57.518 50.000 11.73 0.00 35.33 2.73
796 1416 2.482414 ATTACCTCCGTCCCATGGTA 57.518 50.000 11.73 0.00 34.33 3.25
797 1417 2.482414 TATTACCTCCGTCCCATGGT 57.518 50.000 11.73 0.00 36.66 3.55
798 1418 3.583086 AGAATATTACCTCCGTCCCATGG 59.417 47.826 4.14 4.14 0.00 3.66
799 1419 4.891992 AGAATATTACCTCCGTCCCATG 57.108 45.455 0.00 0.00 0.00 3.66
801 1421 5.703730 AAAAGAATATTACCTCCGTCCCA 57.296 39.130 0.00 0.00 0.00 4.37
854 1474 4.218417 AGCATTTCCTCAGTTAAACGCATT 59.782 37.500 0.00 0.00 0.00 3.56
855 1475 3.758554 AGCATTTCCTCAGTTAAACGCAT 59.241 39.130 0.00 0.00 0.00 4.73
856 1476 3.146066 AGCATTTCCTCAGTTAAACGCA 58.854 40.909 0.00 0.00 0.00 5.24
857 1477 3.437049 AGAGCATTTCCTCAGTTAAACGC 59.563 43.478 0.00 0.00 34.26 4.84
859 1479 7.208225 AGAAAGAGCATTTCCTCAGTTAAAC 57.792 36.000 9.95 0.00 34.26 2.01
860 1480 8.784043 GTTAGAAAGAGCATTTCCTCAGTTAAA 58.216 33.333 9.95 0.00 34.26 1.52
861 1481 7.936847 TGTTAGAAAGAGCATTTCCTCAGTTAA 59.063 33.333 9.95 1.12 34.26 2.01
863 1483 6.299141 TGTTAGAAAGAGCATTTCCTCAGTT 58.701 36.000 9.95 0.00 34.26 3.16
864 1484 5.869579 TGTTAGAAAGAGCATTTCCTCAGT 58.130 37.500 9.95 0.00 34.26 3.41
865 1485 6.596888 TCATGTTAGAAAGAGCATTTCCTCAG 59.403 38.462 9.95 0.00 34.26 3.35
869 1489 6.500684 TGTCATGTTAGAAAGAGCATTTCC 57.499 37.500 9.95 0.00 0.00 3.13
875 1495 8.560374 GGGTTATATTGTCATGTTAGAAAGAGC 58.440 37.037 0.00 0.00 0.00 4.09
931 1861 8.327429 CGTTTGTTTCTCAAGTTGCATATTTTT 58.673 29.630 0.00 0.00 37.35 1.94
932 1862 7.704472 TCGTTTGTTTCTCAAGTTGCATATTTT 59.296 29.630 0.00 0.00 37.35 1.82
935 1865 6.312399 TCGTTTGTTTCTCAAGTTGCATAT 57.688 33.333 0.00 0.00 37.35 1.78
936 1866 5.743026 TCGTTTGTTTCTCAAGTTGCATA 57.257 34.783 0.00 0.00 37.35 3.14
940 2377 8.560576 AAATGTATCGTTTGTTTCTCAAGTTG 57.439 30.769 0.00 0.00 37.35 3.16
1044 2481 4.285863 AGATTTGTTTTGTTGTGGAGGGA 58.714 39.130 0.00 0.00 0.00 4.20
1045 2482 4.501400 GGAGATTTGTTTTGTTGTGGAGGG 60.501 45.833 0.00 0.00 0.00 4.30
1046 2483 4.342092 AGGAGATTTGTTTTGTTGTGGAGG 59.658 41.667 0.00 0.00 0.00 4.30
1047 2484 5.520376 AGGAGATTTGTTTTGTTGTGGAG 57.480 39.130 0.00 0.00 0.00 3.86
1088 2525 0.996762 GGAGGAGAGGAGAGAGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
1090 2527 1.541672 GGGAGGAGAGGAGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
1240 2693 2.991190 TCGAGTTATTGCTTCCGTTGTC 59.009 45.455 0.00 0.00 0.00 3.18
1510 2981 4.103103 GCGAGGCGGAAAAGGCAC 62.103 66.667 0.00 0.00 39.37 5.01
1511 2982 3.842925 AAGCGAGGCGGAAAAGGCA 62.843 57.895 0.00 0.00 39.37 4.75
1519 2990 3.188786 CGAAAGGAAGCGAGGCGG 61.189 66.667 0.00 0.00 0.00 6.13
1547 3018 1.372582 ACACACACGCATCCATCATC 58.627 50.000 0.00 0.00 0.00 2.92
1680 3153 3.591254 GACGTGGCGCCCTTCTTCT 62.591 63.158 26.77 0.00 0.00 2.85
1807 3280 2.019156 GCATCCACCTTACCCTCTTGC 61.019 57.143 0.00 0.00 0.00 4.01
1984 3457 1.536418 CCTGACCACCACCTCCTCA 60.536 63.158 0.00 0.00 0.00 3.86
2083 3556 7.627088 GCAGAAACGTTATGTACCTCTGTAGTA 60.627 40.741 19.56 0.00 35.71 1.82
2172 3645 4.367023 TCCGCGTACCACCTGCAC 62.367 66.667 4.92 0.00 0.00 4.57
2306 3779 3.063997 CGAGGCATAATCAAACACACTCC 59.936 47.826 0.00 0.00 0.00 3.85
2309 3782 4.083537 TGAACGAGGCATAATCAAACACAC 60.084 41.667 0.00 0.00 0.00 3.82
2320 3793 3.785486 CACTCTCATTGAACGAGGCATA 58.215 45.455 7.58 0.00 0.00 3.14
2358 3831 9.333497 CACACAATTTGTACAGAATTCATACAG 57.667 33.333 17.22 11.30 35.67 2.74
2467 3949 5.047802 ACCCAATTGCTCTTGTACAGATTTG 60.048 40.000 0.00 0.00 0.00 2.32
2478 3961 1.342174 CAGTTGCACCCAATTGCTCTT 59.658 47.619 0.00 0.00 43.41 2.85
2480 3963 0.037975 CCAGTTGCACCCAATTGCTC 60.038 55.000 0.00 0.00 43.41 4.26
2482 3965 1.004679 CCCAGTTGCACCCAATTGC 60.005 57.895 0.00 0.00 43.31 3.56
2490 3973 1.398692 TTCAAGTTCCCCAGTTGCAC 58.601 50.000 0.00 0.00 35.94 4.57
2627 4135 4.640771 AATGTCAATACCGGGAGCATAT 57.359 40.909 6.32 0.00 0.00 1.78
2650 4158 6.086222 CGGGCATGCTTGTATTAAATATGAC 58.914 40.000 18.92 0.00 0.00 3.06
2671 4179 5.914898 AATCCTAGAAAAACAATTCCGGG 57.085 39.130 0.00 0.00 0.00 5.73
2673 4181 9.855021 ACATTTAATCCTAGAAAAACAATTCCG 57.145 29.630 0.00 0.00 0.00 4.30
2710 4218 9.462606 ACTTTTAAGACGGGAAGATAAAATCAT 57.537 29.630 0.00 0.00 0.00 2.45
2761 4269 7.062722 CAGACATGTATTATTACCATGCTCTCG 59.937 40.741 0.00 0.00 0.00 4.04
2815 4323 8.576442 GGTTTTCTTCCTGACATAATTTTCTCA 58.424 33.333 0.00 0.00 0.00 3.27
2824 4332 6.361433 TGTTCAAGGTTTTCTTCCTGACATA 58.639 36.000 0.00 0.00 35.27 2.29
2828 4336 5.261216 ACTTGTTCAAGGTTTTCTTCCTGA 58.739 37.500 15.51 0.00 35.27 3.86
2841 4349 6.798315 ATGATCTCAGACAACTTGTTCAAG 57.202 37.500 10.50 10.50 0.00 3.02
2897 4407 7.497595 TGTACTAATAAACCCAGCAGTCATAG 58.502 38.462 0.00 0.00 0.00 2.23
2923 4433 9.890629 AGAAATACTTACATGATACAGAGCAAA 57.109 29.630 0.00 0.00 0.00 3.68
2954 4464 0.961753 GCAAAAGGGCAGCACTAAGT 59.038 50.000 0.00 0.00 0.00 2.24
2982 4492 9.461312 AAATGGTGCTTCTATTGTACAGATAAA 57.539 29.630 0.00 0.00 0.00 1.40
3049 4559 5.476254 TGTATGAGACTGAGATCTAGCATGG 59.524 44.000 0.00 0.00 0.00 3.66
3137 4647 4.517285 ACACATGGCTCGTTGATATCTTT 58.483 39.130 3.98 0.00 0.00 2.52
3419 4935 8.985805 CGTGACTATTCCCCACTATATAAAAAC 58.014 37.037 0.00 0.00 0.00 2.43
3444 4962 7.436673 TGGGAAATTCTTTTGATGTAAACAACG 59.563 33.333 0.00 0.00 0.00 4.10
3491 5009 2.017049 AGCTCACAGGAAAACACACAC 58.983 47.619 0.00 0.00 0.00 3.82
3530 5048 7.159372 TCTTCACAATAGTACAAAGAAGGTCC 58.841 38.462 0.00 0.00 33.65 4.46
3549 5067 0.957888 GCAGGGAGCAGGTTCTTCAC 60.958 60.000 0.00 0.00 44.79 3.18
3584 5102 0.960364 TCGCAGAAAAGGTGCATCCC 60.960 55.000 0.00 0.00 41.26 3.85
3588 5106 4.458989 AGAAAATATCGCAGAAAAGGTGCA 59.541 37.500 0.00 0.00 43.58 4.57
3644 5162 6.016527 TGGTATGTTACTACTTATCAGCTCCG 60.017 42.308 0.00 0.00 0.00 4.63
3681 5199 6.777580 TCAAGATAAAATAAGCCAAGGATCCC 59.222 38.462 8.55 0.00 0.00 3.85
3760 5278 5.580661 TCATTATCCACATTTTCGTGCATG 58.419 37.500 0.00 0.00 35.47 4.06
3782 5300 8.993121 TCTAAGTCATGACAGATTTTTGAGTTC 58.007 33.333 27.02 0.00 33.35 3.01
3898 5416 4.082081 TGAGCATAACAAGGGCATTTCTTG 60.082 41.667 0.00 0.00 45.03 3.02
3943 5462 0.884704 TCTGCCGTCTTGCTTTCCAC 60.885 55.000 0.00 0.00 0.00 4.02
4020 5539 6.566079 AATCCTTCAACTCCATCATCTGTA 57.434 37.500 0.00 0.00 0.00 2.74
4141 5660 6.326843 AGACAAGGGGTAATACTCAGAATACC 59.673 42.308 0.00 0.00 37.63 2.73
4175 5694 3.306780 GCTACAAGGACAGCAGAACCTAA 60.307 47.826 0.00 0.00 37.73 2.69
4214 5733 5.186797 AGACCAAAATTTTCACTGTTGACCA 59.813 36.000 0.00 0.00 0.00 4.02
4243 5762 6.814043 ACCTCCCGACAAATAAGTATAGAAC 58.186 40.000 0.00 0.00 0.00 3.01
4316 5835 7.318893 AGGAACTACTTAAGACCACGATAAAC 58.681 38.462 10.09 0.00 36.02 2.01
4333 5852 5.521906 TCTGATATGCTGTGAGGAACTAC 57.478 43.478 0.00 0.00 41.55 2.73
4346 5865 8.749499 GCTTTTGTATTCAACATTCTGATATGC 58.251 33.333 0.00 0.00 38.10 3.14
4371 5890 9.822185 AACCCATATCAAGATCTTTATTTTTGC 57.178 29.630 4.86 0.00 0.00 3.68
4386 5905 7.447374 CACAAAAGAGTGTAACCCATATCAA 57.553 36.000 0.00 0.00 37.80 2.57
4408 5927 3.603532 TCATCTGATGGAAGAGCAACAC 58.396 45.455 17.06 0.00 0.00 3.32
4413 5932 3.003482 GTGCAATCATCTGATGGAAGAGC 59.997 47.826 17.06 13.78 34.49 4.09
4414 5933 4.196971 TGTGCAATCATCTGATGGAAGAG 58.803 43.478 17.06 5.27 34.49 2.85
4506 6030 2.159653 GCCAGCATCTTTACACACTTCG 60.160 50.000 0.00 0.00 0.00 3.79
4574 6105 6.183347 AGCAAGTAATGGAGCTCAACTATTT 58.817 36.000 17.19 0.00 30.05 1.40
4592 6123 5.140454 AGTAAAGACCATGGAAAAGCAAGT 58.860 37.500 21.47 0.00 0.00 3.16
4600 6131 6.775142 TGAAATTGTGAGTAAAGACCATGGAA 59.225 34.615 21.47 0.00 0.00 3.53
4604 6135 7.004086 TCCTTGAAATTGTGAGTAAAGACCAT 58.996 34.615 0.00 0.00 0.00 3.55
4617 6148 5.359756 GTGAGCCTTTTTCCTTGAAATTGT 58.640 37.500 0.00 0.00 31.34 2.71
4653 6184 3.561725 GCTAGTTTGCCAGAATAAGCGAT 59.438 43.478 0.00 0.00 0.00 4.58
4784 6317 3.672808 CCATCTTTCAGACACAGCTTCT 58.327 45.455 0.00 0.00 0.00 2.85
4790 6323 1.202639 ACACGCCATCTTTCAGACACA 60.203 47.619 0.00 0.00 0.00 3.72
4866 6399 1.215382 GCAGCGGTTTGGGAATTCC 59.785 57.895 16.74 16.74 0.00 3.01
4872 6405 0.109132 GAGAAATGCAGCGGTTTGGG 60.109 55.000 0.00 0.00 0.00 4.12
4893 6426 3.347958 TGACCAAACGAAATTCAGCAC 57.652 42.857 0.00 0.00 0.00 4.40
4903 6436 3.616821 CGATGCTTAGAATGACCAAACGA 59.383 43.478 0.00 0.00 0.00 3.85
4905 6438 4.391830 TGTCGATGCTTAGAATGACCAAAC 59.608 41.667 0.00 0.00 0.00 2.93
4907 6440 4.200838 TGTCGATGCTTAGAATGACCAA 57.799 40.909 0.00 0.00 0.00 3.67
4923 6456 4.794439 CACGCCTCGCCATGTCGA 62.794 66.667 0.00 0.00 36.94 4.20
4955 6488 0.673644 CGGAGCGGATGACAAAAGGT 60.674 55.000 0.00 0.00 0.00 3.50
5030 6564 0.893270 TTGGCCGTCATTTGACCCAG 60.893 55.000 0.00 0.00 41.86 4.45
5069 6604 1.757682 TGAACTTGTGGCCGAAAAGT 58.242 45.000 10.78 10.78 35.70 2.66
5116 6651 3.175240 GATCGCCGATCATCGCCG 61.175 66.667 21.52 3.58 42.32 6.46
5127 6662 0.319641 GGTTGATAGGTCGGATCGCC 60.320 60.000 0.00 0.00 0.00 5.54
5146 6681 1.338674 TGAGGTAATGGCGTCCAAGTG 60.339 52.381 2.68 0.00 36.95 3.16
5149 6684 2.570415 TTTGAGGTAATGGCGTCCAA 57.430 45.000 2.68 0.00 36.95 3.53
5191 6735 3.882288 GGATCTGAAGAATCTTTCCTGGC 59.118 47.826 0.00 0.00 0.00 4.85
5214 6758 1.479323 AGGCTATCGTTTTCTGCGGTA 59.521 47.619 0.00 0.00 0.00 4.02
5232 6776 6.771573 AGTAGTAGTACCAGCTATCTACAGG 58.228 44.000 4.02 2.06 36.30 4.00
5254 6798 8.027771 CGTCTTATAAAAGTGAACAGAGGTAGT 58.972 37.037 0.00 0.00 34.13 2.73
5255 6799 8.027771 ACGTCTTATAAAAGTGAACAGAGGTAG 58.972 37.037 0.00 0.00 34.13 3.18
5256 6800 7.889469 ACGTCTTATAAAAGTGAACAGAGGTA 58.111 34.615 0.00 0.00 34.13 3.08
5257 6801 6.756221 ACGTCTTATAAAAGTGAACAGAGGT 58.244 36.000 0.00 0.00 34.13 3.85
5258 6802 7.653767 AACGTCTTATAAAAGTGAACAGAGG 57.346 36.000 0.00 0.00 34.13 3.69
5271 6815 9.917129 TGTCTGAATGTCTAAAACGTCTTATAA 57.083 29.630 0.00 0.00 0.00 0.98
5272 6816 9.350357 GTGTCTGAATGTCTAAAACGTCTTATA 57.650 33.333 0.00 0.00 0.00 0.98
5273 6817 8.088981 AGTGTCTGAATGTCTAAAACGTCTTAT 58.911 33.333 0.00 0.00 0.00 1.73
5274 6818 7.381408 CAGTGTCTGAATGTCTAAAACGTCTTA 59.619 37.037 0.00 0.00 32.44 2.10
5275 6819 6.201044 CAGTGTCTGAATGTCTAAAACGTCTT 59.799 38.462 0.00 0.00 32.44 3.01
5276 6820 5.692204 CAGTGTCTGAATGTCTAAAACGTCT 59.308 40.000 0.00 0.00 32.44 4.18
5277 6821 5.462398 ACAGTGTCTGAATGTCTAAAACGTC 59.538 40.000 3.70 0.00 35.18 4.34
5278 6822 5.357257 ACAGTGTCTGAATGTCTAAAACGT 58.643 37.500 3.70 0.00 35.18 3.99
5279 6823 5.107453 GGACAGTGTCTGAATGTCTAAAACG 60.107 44.000 22.18 0.00 42.36 3.60
5280 6824 5.758296 TGGACAGTGTCTGAATGTCTAAAAC 59.242 40.000 22.18 1.74 42.36 2.43
5281 6825 5.924356 TGGACAGTGTCTGAATGTCTAAAA 58.076 37.500 22.18 0.00 42.36 1.52
5282 6826 5.545063 TGGACAGTGTCTGAATGTCTAAA 57.455 39.130 22.18 3.72 42.36 1.85
5283 6827 5.545063 TTGGACAGTGTCTGAATGTCTAA 57.455 39.130 22.18 12.93 42.36 2.10
5284 6828 5.545063 TTTGGACAGTGTCTGAATGTCTA 57.455 39.130 22.18 8.90 42.36 2.59
5285 6829 4.422073 TTTGGACAGTGTCTGAATGTCT 57.578 40.909 22.18 0.00 42.36 3.41
5286 6830 4.335315 TGTTTTGGACAGTGTCTGAATGTC 59.665 41.667 22.18 4.97 42.07 3.06
5287 6831 4.269183 TGTTTTGGACAGTGTCTGAATGT 58.731 39.130 22.18 0.00 35.18 2.71
5288 6832 4.898829 TGTTTTGGACAGTGTCTGAATG 57.101 40.909 22.18 0.00 35.18 2.67
5299 6843 4.676723 GCTTGCTTTGTACTGTTTTGGACA 60.677 41.667 0.00 0.00 36.65 4.02
5300 6844 3.796717 GCTTGCTTTGTACTGTTTTGGAC 59.203 43.478 0.00 0.00 0.00 4.02
5301 6845 3.699038 AGCTTGCTTTGTACTGTTTTGGA 59.301 39.130 0.00 0.00 0.00 3.53
5302 6846 3.798337 CAGCTTGCTTTGTACTGTTTTGG 59.202 43.478 0.00 0.00 0.00 3.28
5303 6847 4.423732 ACAGCTTGCTTTGTACTGTTTTG 58.576 39.130 0.00 0.00 38.38 2.44
5304 6848 4.399303 AGACAGCTTGCTTTGTACTGTTTT 59.601 37.500 0.00 0.00 41.45 2.43
5305 6849 3.947834 AGACAGCTTGCTTTGTACTGTTT 59.052 39.130 0.00 0.00 41.45 2.83
5306 6850 3.313526 CAGACAGCTTGCTTTGTACTGTT 59.686 43.478 0.00 0.00 41.45 3.16
5307 6851 2.874701 CAGACAGCTTGCTTTGTACTGT 59.125 45.455 0.00 0.00 43.93 3.55
5308 6852 3.133691 TCAGACAGCTTGCTTTGTACTG 58.866 45.455 0.00 0.00 0.00 2.74
5309 6853 3.475566 TCAGACAGCTTGCTTTGTACT 57.524 42.857 0.00 0.00 0.00 2.73
5310 6854 4.282873 GTTTCAGACAGCTTGCTTTGTAC 58.717 43.478 0.00 0.00 0.00 2.90
5311 6855 3.002246 CGTTTCAGACAGCTTGCTTTGTA 59.998 43.478 0.00 0.00 0.00 2.41
5312 6856 2.223340 CGTTTCAGACAGCTTGCTTTGT 60.223 45.455 0.00 0.00 0.00 2.83
5313 6857 2.223340 ACGTTTCAGACAGCTTGCTTTG 60.223 45.455 0.00 0.00 0.00 2.77
5314 6858 2.017049 ACGTTTCAGACAGCTTGCTTT 58.983 42.857 0.00 0.00 0.00 3.51
5315 6859 1.599542 GACGTTTCAGACAGCTTGCTT 59.400 47.619 0.00 0.00 0.00 3.91
5316 6860 1.202580 AGACGTTTCAGACAGCTTGCT 60.203 47.619 0.00 0.00 0.00 3.91
5317 6861 1.221414 AGACGTTTCAGACAGCTTGC 58.779 50.000 0.00 0.00 0.00 4.01
5318 6862 3.802139 TGTAAGACGTTTCAGACAGCTTG 59.198 43.478 0.00 0.00 0.00 4.01
5319 6863 4.054780 TGTAAGACGTTTCAGACAGCTT 57.945 40.909 0.00 0.00 0.00 3.74
5320 6864 3.728076 TGTAAGACGTTTCAGACAGCT 57.272 42.857 0.00 0.00 0.00 4.24
5321 6865 4.789095 TTTGTAAGACGTTTCAGACAGC 57.211 40.909 0.00 0.00 0.00 4.40
5322 6866 6.539324 TGTTTTTGTAAGACGTTTCAGACAG 58.461 36.000 0.00 0.00 0.00 3.51
5323 6867 6.483385 TGTTTTTGTAAGACGTTTCAGACA 57.517 33.333 0.00 0.00 0.00 3.41
5324 6868 7.459219 CGTTTGTTTTTGTAAGACGTTTCAGAC 60.459 37.037 0.00 0.00 0.00 3.51
5325 6869 6.520447 CGTTTGTTTTTGTAAGACGTTTCAGA 59.480 34.615 0.00 0.00 0.00 3.27
5326 6870 6.237097 CCGTTTGTTTTTGTAAGACGTTTCAG 60.237 38.462 0.00 0.00 0.00 3.02
5327 6871 5.568296 CCGTTTGTTTTTGTAAGACGTTTCA 59.432 36.000 0.00 0.00 0.00 2.69
5328 6872 5.794448 TCCGTTTGTTTTTGTAAGACGTTTC 59.206 36.000 0.00 0.00 0.00 2.78
5329 6873 5.697826 TCCGTTTGTTTTTGTAAGACGTTT 58.302 33.333 0.00 0.00 0.00 3.60
5330 6874 5.294050 TCCGTTTGTTTTTGTAAGACGTT 57.706 34.783 0.00 0.00 0.00 3.99
5331 6875 4.201841 CCTCCGTTTGTTTTTGTAAGACGT 60.202 41.667 0.00 0.00 0.00 4.34
5332 6876 4.276460 CCTCCGTTTGTTTTTGTAAGACG 58.724 43.478 0.00 0.00 0.00 4.18
5333 6877 4.336153 TCCCTCCGTTTGTTTTTGTAAGAC 59.664 41.667 0.00 0.00 0.00 3.01
5334 6878 4.525024 TCCCTCCGTTTGTTTTTGTAAGA 58.475 39.130 0.00 0.00 0.00 2.10
5335 6879 4.337274 ACTCCCTCCGTTTGTTTTTGTAAG 59.663 41.667 0.00 0.00 0.00 2.34
5336 6880 4.271661 ACTCCCTCCGTTTGTTTTTGTAA 58.728 39.130 0.00 0.00 0.00 2.41
5337 6881 3.888583 ACTCCCTCCGTTTGTTTTTGTA 58.111 40.909 0.00 0.00 0.00 2.41
5338 6882 2.730382 ACTCCCTCCGTTTGTTTTTGT 58.270 42.857 0.00 0.00 0.00 2.83
5339 6883 3.881089 ACTACTCCCTCCGTTTGTTTTTG 59.119 43.478 0.00 0.00 0.00 2.44
5340 6884 4.160642 ACTACTCCCTCCGTTTGTTTTT 57.839 40.909 0.00 0.00 0.00 1.94
5341 6885 3.851458 ACTACTCCCTCCGTTTGTTTT 57.149 42.857 0.00 0.00 0.00 2.43
5342 6886 4.961438 TTACTACTCCCTCCGTTTGTTT 57.039 40.909 0.00 0.00 0.00 2.83
5343 6887 4.961438 TTTACTACTCCCTCCGTTTGTT 57.039 40.909 0.00 0.00 0.00 2.83
5344 6888 5.494390 AATTTACTACTCCCTCCGTTTGT 57.506 39.130 0.00 0.00 0.00 2.83
5345 6889 5.935789 TGAAATTTACTACTCCCTCCGTTTG 59.064 40.000 0.00 0.00 0.00 2.93
5346 6890 6.117975 TGAAATTTACTACTCCCTCCGTTT 57.882 37.500 0.00 0.00 0.00 3.60
5347 6891 5.750352 TGAAATTTACTACTCCCTCCGTT 57.250 39.130 0.00 0.00 0.00 4.44
5348 6892 5.952347 ATGAAATTTACTACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.