Multiple sequence alignment - TraesCS3A01G254400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G254400 chr3A 100.000 3957 0 0 1 3957 476090033 476086077 0.000000e+00 7308
1 TraesCS3A01G254400 chr3D 92.857 3038 120 39 570 3541 356957291 356954285 0.000000e+00 4318
2 TraesCS3A01G254400 chr3D 87.741 571 63 6 1 570 301949431 301948867 0.000000e+00 660
3 TraesCS3A01G254400 chr3D 85.203 419 59 3 3540 3957 573629692 573629276 1.020000e-115 427
4 TraesCS3A01G254400 chr3B 94.417 1397 40 6 964 2346 458171868 458170496 0.000000e+00 2113
5 TraesCS3A01G254400 chr3B 94.552 569 18 4 2399 2954 458170491 458169923 0.000000e+00 867
6 TraesCS3A01G254400 chr3B 89.971 339 16 8 570 900 458172769 458172441 4.730000e-114 422
7 TraesCS3A01G254400 chr3B 85.792 183 22 3 3110 3290 800928150 800928330 1.450000e-44 191
8 TraesCS3A01G254400 chr4A 93.019 573 38 2 1 573 599761006 599760436 0.000000e+00 835
9 TraesCS3A01G254400 chr4A 85.071 422 54 8 3538 3954 677738893 677739310 4.730000e-114 422
10 TraesCS3A01G254400 chr7D 92.832 572 38 3 1 570 174297517 174298087 0.000000e+00 826
11 TraesCS3A01G254400 chr2D 91.259 572 45 5 1 570 572345205 572345773 0.000000e+00 774
12 TraesCS3A01G254400 chr2D 85.681 426 55 6 3534 3957 38262273 38261852 1.010000e-120 444
13 TraesCS3A01G254400 chr6A 91.228 570 46 4 1 568 111395929 111395362 0.000000e+00 773
14 TraesCS3A01G254400 chr4D 89.703 573 55 4 1 570 13571559 13572130 0.000000e+00 728
15 TraesCS3A01G254400 chr4D 85.000 420 59 3 3535 3953 124070056 124070472 1.310000e-114 424
16 TraesCS3A01G254400 chr4D 81.181 271 34 11 3109 3367 91078542 91078807 6.700000e-48 202
17 TraesCS3A01G254400 chr4D 80.541 185 28 7 3112 3290 321947221 321947403 6.900000e-28 135
18 TraesCS3A01G254400 chr7B 88.986 572 50 8 1 569 94277653 94278214 0.000000e+00 695
19 TraesCS3A01G254400 chr7B 84.188 234 37 0 3112 3345 605089042 605088809 1.110000e-55 228
20 TraesCS3A01G254400 chr1B 88.636 572 53 8 1 570 418681456 418680895 0.000000e+00 686
21 TraesCS3A01G254400 chr2B 84.174 575 78 12 1 568 503638990 503638422 2.690000e-151 545
22 TraesCS3A01G254400 chr6D 85.748 421 56 4 3537 3954 404320287 404320706 3.630000e-120 442
23 TraesCS3A01G254400 chr5D 85.919 419 52 6 3539 3954 102028127 102028541 1.310000e-119 440
24 TraesCS3A01G254400 chr5D 83.333 162 25 2 3130 3290 532761125 532760965 8.860000e-32 148
25 TraesCS3A01G254400 chr1D 86.098 410 51 5 3551 3957 216044678 216045084 1.690000e-118 436
26 TraesCS3A01G254400 chr1D 81.871 171 29 2 3116 3285 252924957 252925126 4.120000e-30 143
27 TraesCS3A01G254400 chr5B 85.308 422 54 8 3540 3957 9267682 9268099 2.830000e-116 429
28 TraesCS3A01G254400 chr4B 84.726 419 61 3 3538 3954 350587684 350588101 2.200000e-112 416
29 TraesCS3A01G254400 chr4B 82.778 180 25 6 3112 3289 399041201 399041026 5.290000e-34 156
30 TraesCS3A01G254400 chr7A 85.714 245 26 9 3113 3352 26575263 26575503 2.360000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G254400 chr3A 476086077 476090033 3956 True 7308 7308 100.000 1 3957 1 chr3A.!!$R1 3956
1 TraesCS3A01G254400 chr3D 356954285 356957291 3006 True 4318 4318 92.857 570 3541 1 chr3D.!!$R2 2971
2 TraesCS3A01G254400 chr3D 301948867 301949431 564 True 660 660 87.741 1 570 1 chr3D.!!$R1 569
3 TraesCS3A01G254400 chr3B 458169923 458172769 2846 True 1134 2113 92.980 570 2954 3 chr3B.!!$R1 2384
4 TraesCS3A01G254400 chr4A 599760436 599761006 570 True 835 835 93.019 1 573 1 chr4A.!!$R1 572
5 TraesCS3A01G254400 chr7D 174297517 174298087 570 False 826 826 92.832 1 570 1 chr7D.!!$F1 569
6 TraesCS3A01G254400 chr2D 572345205 572345773 568 False 774 774 91.259 1 570 1 chr2D.!!$F1 569
7 TraesCS3A01G254400 chr6A 111395362 111395929 567 True 773 773 91.228 1 568 1 chr6A.!!$R1 567
8 TraesCS3A01G254400 chr4D 13571559 13572130 571 False 728 728 89.703 1 570 1 chr4D.!!$F1 569
9 TraesCS3A01G254400 chr7B 94277653 94278214 561 False 695 695 88.986 1 569 1 chr7B.!!$F1 568
10 TraesCS3A01G254400 chr1B 418680895 418681456 561 True 686 686 88.636 1 570 1 chr1B.!!$R1 569
11 TraesCS3A01G254400 chr2B 503638422 503638990 568 True 545 545 84.174 1 568 1 chr2B.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 932 0.251033 AGTTAGGCCAACCGTTTCCC 60.251 55.0 5.01 0.0 42.76 3.97 F
1836 2374 0.670546 ACAACATGAACTCGGCCTCG 60.671 55.0 0.00 0.0 37.82 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2723 3277 1.123077 TCTATCCCGAGCTGCAACAT 58.877 50.0 1.02 0.0 0.0 2.71 R
3608 4231 0.036010 CTTGAGGGTGCGACTGGATT 60.036 55.0 0.00 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.288308 CTGGTCCGCGCTTGTCTCT 62.288 63.158 5.56 0.00 0.00 3.10
120 121 1.203441 ACATCTCTGGGGCAAGCTGA 61.203 55.000 0.00 0.00 0.00 4.26
142 143 1.400494 GTTGAACTCGTTGGCTTGTGT 59.600 47.619 0.00 0.00 0.00 3.72
263 264 0.313987 ATGCTCGGAATGATCGCGTA 59.686 50.000 5.77 0.00 0.00 4.42
280 281 8.183536 TGATCGCGTATTTAACAGTACTTTCTA 58.816 33.333 5.77 0.00 0.00 2.10
282 283 6.470235 TCGCGTATTTAACAGTACTTTCTAGC 59.530 38.462 5.77 0.00 0.00 3.42
378 379 1.351017 AGGACGATTTGAAGGCTTGGA 59.649 47.619 3.46 0.00 0.00 3.53
437 451 2.433868 TGTTCTCCTTCCGTCTTTCG 57.566 50.000 0.00 0.00 39.52 3.46
444 458 3.415212 TCCTTCCGTCTTTCGTCTCTTA 58.585 45.455 0.00 0.00 37.94 2.10
459 473 4.260990 CGTCTCTTATCTGTCTCTTCGCAT 60.261 45.833 0.00 0.00 0.00 4.73
610 635 4.940046 GGGAGCATAAGTATGATGATGTGG 59.060 45.833 2.42 0.00 35.75 4.17
611 636 4.940046 GGAGCATAAGTATGATGATGTGGG 59.060 45.833 2.42 0.00 35.75 4.61
637 662 8.301002 GGAGCACAAGTTTGTTATATTTGGTAA 58.699 33.333 0.00 0.00 39.91 2.85
654 679 5.217978 TGGTAACACAAGTTTCGGATAGT 57.782 39.130 0.00 0.00 46.17 2.12
655 680 5.613329 TGGTAACACAAGTTTCGGATAGTT 58.387 37.500 0.00 0.00 46.17 2.24
657 682 6.646240 TGGTAACACAAGTTTCGGATAGTTAC 59.354 38.462 0.00 0.00 46.17 2.50
659 684 7.332678 GGTAACACAAGTTTCGGATAGTTACAT 59.667 37.037 0.51 0.00 40.86 2.29
660 685 6.963049 ACACAAGTTTCGGATAGTTACATC 57.037 37.500 0.00 0.00 0.00 3.06
661 686 5.873164 ACACAAGTTTCGGATAGTTACATCC 59.127 40.000 4.48 4.48 41.06 3.51
745 770 5.913137 TGGCTTAGTATCCCAAAACATTG 57.087 39.130 0.00 0.00 0.00 2.82
747 772 6.194235 TGGCTTAGTATCCCAAAACATTGAT 58.806 36.000 0.00 0.00 0.00 2.57
830 855 2.582052 CTTGCTTCCCACCTACACAAA 58.418 47.619 0.00 0.00 0.00 2.83
888 913 1.380785 ATACGGCGGGAAGGAGACA 60.381 57.895 13.24 0.00 0.00 3.41
905 930 1.534163 GACAGTTAGGCCAACCGTTTC 59.466 52.381 5.01 0.00 42.76 2.78
906 931 0.879090 CAGTTAGGCCAACCGTTTCC 59.121 55.000 5.01 0.00 42.76 3.13
907 932 0.251033 AGTTAGGCCAACCGTTTCCC 60.251 55.000 5.01 0.00 42.76 3.97
1223 1759 3.382832 CAGAACGGCCCGAGGTCT 61.383 66.667 11.71 6.53 0.00 3.85
1250 1786 1.478654 GGCTCCAACCCTTTCAACTCA 60.479 52.381 0.00 0.00 0.00 3.41
1313 1849 1.072505 GGTCATCACCACCACCGTT 59.927 57.895 0.00 0.00 43.17 4.44
1836 2374 0.670546 ACAACATGAACTCGGCCTCG 60.671 55.000 0.00 0.00 37.82 4.63
2003 2541 3.385111 CAGGTCCTGGTCTGGATAAGTAC 59.615 52.174 11.46 0.00 38.52 2.73
2068 2606 2.038557 GGAGTACCAAAGAGGACAGCAA 59.961 50.000 0.00 0.00 41.22 3.91
2253 2802 1.625818 GCCTGTCCCTTTTCTCTCTCA 59.374 52.381 0.00 0.00 0.00 3.27
2254 2803 2.039084 GCCTGTCCCTTTTCTCTCTCAA 59.961 50.000 0.00 0.00 0.00 3.02
2268 2817 9.559732 TTTTCTCTCTCAATGAAACATGAACTA 57.440 29.630 0.00 0.00 30.66 2.24
2299 2848 4.519540 AGTTATGGTGAACATTTGGCAC 57.480 40.909 0.00 0.00 41.03 5.01
2309 2858 4.096532 TGAACATTTGGCACGAGTGTTTAA 59.903 37.500 5.07 0.00 33.55 1.52
2311 2860 5.195001 ACATTTGGCACGAGTGTTTAATT 57.805 34.783 5.07 0.00 0.00 1.40
2312 2861 5.219633 ACATTTGGCACGAGTGTTTAATTC 58.780 37.500 5.07 0.00 0.00 2.17
2313 2862 4.902443 TTTGGCACGAGTGTTTAATTCA 57.098 36.364 5.07 0.00 0.00 2.57
2314 2863 5.446143 TTTGGCACGAGTGTTTAATTCAT 57.554 34.783 5.07 0.00 0.00 2.57
2315 2864 6.561737 TTTGGCACGAGTGTTTAATTCATA 57.438 33.333 5.07 0.00 0.00 2.15
2355 2908 9.814899 ATTGTGTAATCAACTTGTTTCAATTCA 57.185 25.926 0.00 0.00 0.00 2.57
2608 3162 4.226427 TCAGTGGAGCTTGCATTCTAAT 57.774 40.909 0.00 0.00 0.00 1.73
2736 3290 0.391661 ACACCTATGTTGCAGCTCGG 60.392 55.000 1.17 2.15 34.46 4.63
2835 3396 1.534163 GCAAGTACCGTTTGTTCTCCC 59.466 52.381 0.00 0.00 0.00 4.30
2836 3397 1.796459 CAAGTACCGTTTGTTCTCCCG 59.204 52.381 0.00 0.00 0.00 5.14
2925 3486 6.360681 GCACATCTCAACAATTACAAGAACAC 59.639 38.462 0.00 0.00 0.00 3.32
3052 3625 4.917385 TGTGAGCAAAATGTATACACCCT 58.083 39.130 7.96 0.26 0.00 4.34
3057 3630 5.815581 AGCAAAATGTATACACCCTCTTCA 58.184 37.500 7.96 0.00 0.00 3.02
3058 3631 6.245408 AGCAAAATGTATACACCCTCTTCAA 58.755 36.000 7.96 0.00 0.00 2.69
3108 3682 4.043200 GCCCGACAAAGTGCCTGC 62.043 66.667 0.00 0.00 0.00 4.85
3109 3683 2.281761 CCCGACAAAGTGCCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
3110 3684 1.003839 CCCGACAAAGTGCCTGCTA 60.004 57.895 0.00 0.00 0.00 3.49
3111 3685 0.605319 CCCGACAAAGTGCCTGCTAA 60.605 55.000 0.00 0.00 0.00 3.09
3112 3686 0.798776 CCGACAAAGTGCCTGCTAAG 59.201 55.000 0.00 0.00 0.00 2.18
3196 3770 7.349598 AGAGAAGGTTTAGCAATCCAATATGT 58.650 34.615 0.00 0.00 0.00 2.29
3197 3771 7.284034 AGAGAAGGTTTAGCAATCCAATATGTG 59.716 37.037 0.00 0.00 0.00 3.21
3211 3792 6.686630 TCCAATATGTGTTTTGCTTTGGTAG 58.313 36.000 0.00 0.00 34.97 3.18
3254 3835 7.095732 TGCTATATTTGCACAAAACACACAATG 60.096 33.333 0.00 0.00 35.31 2.82
3259 3840 5.254339 TGCACAAAACACACAATGACATA 57.746 34.783 0.00 0.00 0.00 2.29
3262 3843 5.919707 GCACAAAACACACAATGACATATGA 59.080 36.000 10.38 0.00 0.00 2.15
3263 3844 6.088483 GCACAAAACACACAATGACATATGAG 59.912 38.462 10.38 2.16 0.00 2.90
3268 3849 8.806429 AAACACACAATGACATATGAGGATAA 57.194 30.769 10.38 0.00 0.00 1.75
3285 3866 8.932945 TGAGGATAATTTATCATAGACGCATC 57.067 34.615 16.27 0.00 36.91 3.91
3286 3867 8.531146 TGAGGATAATTTATCATAGACGCATCA 58.469 33.333 16.27 1.15 36.91 3.07
3299 3880 2.535984 GACGCATCACACACTAGCATAC 59.464 50.000 0.00 0.00 0.00 2.39
3301 3882 2.540515 GCATCACACACTAGCATACGT 58.459 47.619 0.00 0.00 0.00 3.57
3342 3923 3.364023 GCACAACTCTCATACACGTACAC 59.636 47.826 0.00 0.00 0.00 2.90
3343 3924 4.542735 CACAACTCTCATACACGTACACA 58.457 43.478 0.00 0.00 0.00 3.72
3344 3925 4.381863 CACAACTCTCATACACGTACACAC 59.618 45.833 0.00 0.00 0.00 3.82
3409 4014 1.762419 AGTACGCGTACAACACACAG 58.238 50.000 41.10 0.00 38.48 3.66
3410 4015 1.334556 AGTACGCGTACAACACACAGA 59.665 47.619 41.10 9.02 38.48 3.41
3418 4023 3.308595 CGTACAACACACAGACACACAAT 59.691 43.478 0.00 0.00 0.00 2.71
3423 4046 3.867857 ACACACAGACACACAATACACA 58.132 40.909 0.00 0.00 0.00 3.72
3428 4051 3.250762 ACAGACACACAATACACATGCAC 59.749 43.478 0.00 0.00 0.00 4.57
3436 4059 3.379688 ACAATACACATGCACAACACACA 59.620 39.130 0.00 0.00 0.00 3.72
3445 4068 1.528198 GCACAACACACACGTACACAC 60.528 52.381 0.00 0.00 0.00 3.82
3446 4069 1.727335 CACAACACACACGTACACACA 59.273 47.619 0.00 0.00 0.00 3.72
3447 4070 1.727880 ACAACACACACGTACACACAC 59.272 47.619 0.00 0.00 0.00 3.82
3482 4105 0.246910 ACACGTACACACCACACACA 59.753 50.000 0.00 0.00 0.00 3.72
3494 4117 3.183574 CACCACACACACGTATACAACAG 59.816 47.826 3.32 0.00 0.00 3.16
3498 4121 4.046462 ACACACACGTATACAACAGACAC 58.954 43.478 3.32 0.00 0.00 3.67
3503 4126 6.364165 ACACACGTATACAACAGACACATAAC 59.636 38.462 3.32 0.00 0.00 1.89
3505 4128 7.062956 CACACGTATACAACAGACACATAACAT 59.937 37.037 3.32 0.00 0.00 2.71
3541 4164 4.774124 CCCATCTGTCAGATTTGCTAAGA 58.226 43.478 12.88 0.00 31.32 2.10
3542 4165 4.815308 CCCATCTGTCAGATTTGCTAAGAG 59.185 45.833 12.88 0.00 31.32 2.85
3543 4166 4.272991 CCATCTGTCAGATTTGCTAAGAGC 59.727 45.833 12.88 0.00 35.62 4.09
3544 4167 4.874396 CATCTGTCAGATTTGCTAAGAGCA 59.126 41.667 12.88 0.00 40.49 4.26
3555 4178 1.062733 GCTAAGAGCAACTTTAGCCGC 59.937 52.381 5.21 0.00 41.89 6.53
3556 4179 1.324736 CTAAGAGCAACTTTAGCCGCG 59.675 52.381 0.00 0.00 39.72 6.46
3557 4180 1.912371 AAGAGCAACTTTAGCCGCGC 61.912 55.000 0.00 0.00 34.94 6.86
3558 4181 3.382591 GAGCAACTTTAGCCGCGCC 62.383 63.158 0.00 0.00 0.00 6.53
3559 4182 4.476410 GCAACTTTAGCCGCGCCC 62.476 66.667 0.00 0.00 0.00 6.13
3560 4183 3.810896 CAACTTTAGCCGCGCCCC 61.811 66.667 0.00 0.00 0.00 5.80
3561 4184 4.029809 AACTTTAGCCGCGCCCCT 62.030 61.111 0.00 0.00 0.00 4.79
3562 4185 2.662070 AACTTTAGCCGCGCCCCTA 61.662 57.895 0.00 0.00 0.00 3.53
3563 4186 2.187896 AACTTTAGCCGCGCCCCTAA 62.188 55.000 0.00 6.05 0.00 2.69
3564 4187 1.227853 CTTTAGCCGCGCCCCTAAT 60.228 57.895 13.23 0.00 0.00 1.73
3565 4188 1.507141 CTTTAGCCGCGCCCCTAATG 61.507 60.000 13.23 11.97 0.00 1.90
3566 4189 2.951475 TTTAGCCGCGCCCCTAATGG 62.951 60.000 13.23 3.40 0.00 3.16
3568 4191 4.643387 GCCGCGCCCCTAATGGAT 62.643 66.667 0.00 0.00 35.39 3.41
3569 4192 2.358737 CCGCGCCCCTAATGGATC 60.359 66.667 0.00 0.00 35.39 3.36
3570 4193 2.358737 CGCGCCCCTAATGGATCC 60.359 66.667 4.20 4.20 35.39 3.36
3571 4194 2.034221 GCGCCCCTAATGGATCCC 59.966 66.667 9.90 0.00 35.39 3.85
3572 4195 2.757077 CGCCCCTAATGGATCCCC 59.243 66.667 9.90 0.00 35.39 4.81
3573 4196 2.907179 CGCCCCTAATGGATCCCCC 61.907 68.421 9.90 0.00 35.39 5.40
3581 4204 2.764128 TGGATCCCCCAGAGCGAC 60.764 66.667 9.90 0.00 40.82 5.19
3582 4205 2.444895 GGATCCCCCAGAGCGACT 60.445 66.667 0.00 0.00 34.14 4.18
3583 4206 2.066999 GGATCCCCCAGAGCGACTT 61.067 63.158 0.00 0.00 34.14 3.01
3584 4207 1.627297 GGATCCCCCAGAGCGACTTT 61.627 60.000 0.00 0.00 34.14 2.66
3585 4208 0.253327 GATCCCCCAGAGCGACTTTT 59.747 55.000 0.00 0.00 0.00 2.27
3586 4209 0.698818 ATCCCCCAGAGCGACTTTTT 59.301 50.000 0.00 0.00 0.00 1.94
3587 4210 0.036306 TCCCCCAGAGCGACTTTTTC 59.964 55.000 0.00 0.00 0.00 2.29
3588 4211 0.960861 CCCCCAGAGCGACTTTTTCC 60.961 60.000 0.00 0.00 0.00 3.13
3589 4212 0.250727 CCCCAGAGCGACTTTTTCCA 60.251 55.000 0.00 0.00 0.00 3.53
3590 4213 0.875059 CCCAGAGCGACTTTTTCCAC 59.125 55.000 0.00 0.00 0.00 4.02
3591 4214 0.512952 CCAGAGCGACTTTTTCCACG 59.487 55.000 0.00 0.00 0.00 4.94
3594 4217 3.027292 GCGACTTTTTCCACGCCA 58.973 55.556 0.00 0.00 44.27 5.69
3595 4218 1.357334 GCGACTTTTTCCACGCCAA 59.643 52.632 0.00 0.00 44.27 4.52
3596 4219 0.933047 GCGACTTTTTCCACGCCAAC 60.933 55.000 0.00 0.00 44.27 3.77
3623 4246 3.745723 AAAAATCCAGTCGCACCCT 57.254 47.368 0.00 0.00 0.00 4.34
3624 4247 1.534729 AAAAATCCAGTCGCACCCTC 58.465 50.000 0.00 0.00 0.00 4.30
3625 4248 0.400213 AAAATCCAGTCGCACCCTCA 59.600 50.000 0.00 0.00 0.00 3.86
3626 4249 0.400213 AAATCCAGTCGCACCCTCAA 59.600 50.000 0.00 0.00 0.00 3.02
3627 4250 0.036010 AATCCAGTCGCACCCTCAAG 60.036 55.000 0.00 0.00 0.00 3.02
3628 4251 0.904865 ATCCAGTCGCACCCTCAAGA 60.905 55.000 0.00 0.00 0.00 3.02
3629 4252 1.374758 CCAGTCGCACCCTCAAGAC 60.375 63.158 0.00 0.00 0.00 3.01
3630 4253 1.367471 CAGTCGCACCCTCAAGACA 59.633 57.895 0.00 0.00 36.18 3.41
3631 4254 0.946221 CAGTCGCACCCTCAAGACAC 60.946 60.000 0.00 0.00 36.18 3.67
3632 4255 1.668151 GTCGCACCCTCAAGACACC 60.668 63.158 0.00 0.00 34.09 4.16
3633 4256 2.738521 CGCACCCTCAAGACACCG 60.739 66.667 0.00 0.00 0.00 4.94
3634 4257 2.741092 GCACCCTCAAGACACCGA 59.259 61.111 0.00 0.00 0.00 4.69
3635 4258 1.070786 GCACCCTCAAGACACCGAA 59.929 57.895 0.00 0.00 0.00 4.30
3636 4259 0.534203 GCACCCTCAAGACACCGAAA 60.534 55.000 0.00 0.00 0.00 3.46
3637 4260 1.882352 GCACCCTCAAGACACCGAAAT 60.882 52.381 0.00 0.00 0.00 2.17
3638 4261 2.076863 CACCCTCAAGACACCGAAATC 58.923 52.381 0.00 0.00 0.00 2.17
3639 4262 1.003233 ACCCTCAAGACACCGAAATCC 59.997 52.381 0.00 0.00 0.00 3.01
3640 4263 1.359848 CCTCAAGACACCGAAATCCG 58.640 55.000 0.00 0.00 38.18 4.18
3641 4264 0.721718 CTCAAGACACCGAAATCCGC 59.278 55.000 0.00 0.00 36.84 5.54
3642 4265 0.672401 TCAAGACACCGAAATCCGCC 60.672 55.000 0.00 0.00 36.84 6.13
3643 4266 1.740296 AAGACACCGAAATCCGCCG 60.740 57.895 0.00 0.00 36.84 6.46
3660 4283 2.650778 GGCTCGGCCTGTTTTTGG 59.349 61.111 0.00 0.00 46.69 3.28
3661 4284 2.650778 GCTCGGCCTGTTTTTGGG 59.349 61.111 0.00 0.00 0.00 4.12
3662 4285 2.650778 CTCGGCCTGTTTTTGGGC 59.349 61.111 0.00 0.00 46.89 5.36
3663 4286 1.903404 CTCGGCCTGTTTTTGGGCT 60.903 57.895 0.00 0.00 46.80 5.19
3664 4287 1.866853 CTCGGCCTGTTTTTGGGCTC 61.867 60.000 0.00 0.00 46.80 4.70
3665 4288 2.650778 GGCCTGTTTTTGGGCTCG 59.349 61.111 0.00 0.00 46.80 5.03
3666 4289 2.650778 GCCTGTTTTTGGGCTCGG 59.349 61.111 0.00 0.00 44.48 4.63
3667 4290 2.650778 CCTGTTTTTGGGCTCGGC 59.349 61.111 0.00 0.00 0.00 5.54
3668 4291 2.255252 CTGTTTTTGGGCTCGGCG 59.745 61.111 0.00 0.00 0.00 6.46
3669 4292 2.203224 TGTTTTTGGGCTCGGCGA 60.203 55.556 10.14 10.14 0.00 5.54
3670 4293 1.586154 CTGTTTTTGGGCTCGGCGAT 61.586 55.000 11.27 0.00 0.00 4.58
3671 4294 1.136774 GTTTTTGGGCTCGGCGATC 59.863 57.895 11.27 6.00 0.00 3.69
3672 4295 2.043980 TTTTTGGGCTCGGCGATCC 61.044 57.895 20.90 20.90 0.00 3.36
3673 4296 3.987954 TTTTGGGCTCGGCGATCCC 62.988 63.158 35.47 35.47 38.39 3.85
3676 4299 4.996434 GGGCTCGGCGATCCCATG 62.996 72.222 36.60 14.95 37.87 3.66
3682 4305 3.279875 GGCGATCCCATGCCGAAC 61.280 66.667 0.00 0.00 42.22 3.95
3683 4306 2.513666 GCGATCCCATGCCGAACA 60.514 61.111 0.00 0.00 0.00 3.18
3684 4307 2.823829 GCGATCCCATGCCGAACAC 61.824 63.158 0.00 0.00 0.00 3.32
3685 4308 1.449423 CGATCCCATGCCGAACACA 60.449 57.895 0.00 0.00 0.00 3.72
3686 4309 1.431488 CGATCCCATGCCGAACACAG 61.431 60.000 0.00 0.00 0.00 3.66
3687 4310 1.718757 GATCCCATGCCGAACACAGC 61.719 60.000 0.00 0.00 0.00 4.40
3688 4311 3.803082 CCCATGCCGAACACAGCG 61.803 66.667 0.00 0.00 0.00 5.18
3689 4312 4.465512 CCATGCCGAACACAGCGC 62.466 66.667 0.00 0.00 0.00 5.92
3690 4313 3.725459 CATGCCGAACACAGCGCA 61.725 61.111 11.47 0.00 0.00 6.09
3691 4314 3.726517 ATGCCGAACACAGCGCAC 61.727 61.111 11.47 0.00 0.00 5.34
3692 4315 4.908687 TGCCGAACACAGCGCACT 62.909 61.111 11.47 0.00 0.00 4.40
3723 4346 3.717294 GGCTCCAGCGGAAGGGAA 61.717 66.667 0.00 0.00 43.26 3.97
3724 4347 2.351276 GCTCCAGCGGAAGGGAAA 59.649 61.111 0.00 0.00 31.58 3.13
3725 4348 1.303317 GCTCCAGCGGAAGGGAAAA 60.303 57.895 0.00 0.00 31.58 2.29
3726 4349 0.893727 GCTCCAGCGGAAGGGAAAAA 60.894 55.000 0.00 0.00 31.58 1.94
3727 4350 1.839424 CTCCAGCGGAAGGGAAAAAT 58.161 50.000 0.00 0.00 31.58 1.82
3728 4351 2.944094 GCTCCAGCGGAAGGGAAAAATA 60.944 50.000 0.00 0.00 31.58 1.40
3729 4352 2.683362 CTCCAGCGGAAGGGAAAAATAC 59.317 50.000 0.00 0.00 31.58 1.89
3730 4353 2.040545 TCCAGCGGAAGGGAAAAATACA 59.959 45.455 0.00 0.00 0.00 2.29
3731 4354 2.163613 CCAGCGGAAGGGAAAAATACAC 59.836 50.000 0.00 0.00 0.00 2.90
3732 4355 2.817258 CAGCGGAAGGGAAAAATACACA 59.183 45.455 0.00 0.00 0.00 3.72
3733 4356 3.443681 CAGCGGAAGGGAAAAATACACAT 59.556 43.478 0.00 0.00 0.00 3.21
3734 4357 3.443681 AGCGGAAGGGAAAAATACACATG 59.556 43.478 0.00 0.00 0.00 3.21
3735 4358 3.428862 GCGGAAGGGAAAAATACACATGG 60.429 47.826 0.00 0.00 0.00 3.66
3736 4359 4.013728 CGGAAGGGAAAAATACACATGGA 58.986 43.478 0.00 0.00 0.00 3.41
3737 4360 4.644685 CGGAAGGGAAAAATACACATGGAT 59.355 41.667 0.00 0.00 0.00 3.41
3738 4361 5.221048 CGGAAGGGAAAAATACACATGGATC 60.221 44.000 0.00 0.00 0.00 3.36
3739 4362 5.656416 GGAAGGGAAAAATACACATGGATCA 59.344 40.000 0.00 0.00 0.00 2.92
3740 4363 6.405842 GGAAGGGAAAAATACACATGGATCAC 60.406 42.308 0.00 0.00 0.00 3.06
3741 4364 5.579047 AGGGAAAAATACACATGGATCACA 58.421 37.500 0.00 0.00 0.00 3.58
3742 4365 5.418840 AGGGAAAAATACACATGGATCACAC 59.581 40.000 0.00 0.00 0.00 3.82
3743 4366 5.418840 GGGAAAAATACACATGGATCACACT 59.581 40.000 0.00 0.00 0.00 3.55
3744 4367 6.324819 GGAAAAATACACATGGATCACACTG 58.675 40.000 0.00 0.00 0.00 3.66
3745 4368 6.071952 GGAAAAATACACATGGATCACACTGT 60.072 38.462 0.00 0.00 0.00 3.55
3746 4369 6.500684 AAAATACACATGGATCACACTGTC 57.499 37.500 0.00 0.00 0.00 3.51
3747 4370 4.824479 ATACACATGGATCACACTGTCA 57.176 40.909 0.00 0.00 0.00 3.58
3748 4371 3.049708 ACACATGGATCACACTGTCAG 57.950 47.619 0.00 0.00 0.00 3.51
3749 4372 2.289882 ACACATGGATCACACTGTCAGG 60.290 50.000 4.53 0.00 0.00 3.86
3750 4373 1.339438 ACATGGATCACACTGTCAGGC 60.339 52.381 4.53 0.00 0.00 4.85
3751 4374 0.107993 ATGGATCACACTGTCAGGCG 60.108 55.000 4.53 0.00 0.00 5.52
3752 4375 1.184970 TGGATCACACTGTCAGGCGA 61.185 55.000 4.53 0.00 0.00 5.54
3753 4376 0.037326 GGATCACACTGTCAGGCGAA 60.037 55.000 4.53 0.00 0.00 4.70
3754 4377 1.608025 GGATCACACTGTCAGGCGAAA 60.608 52.381 4.53 0.00 0.00 3.46
3755 4378 2.143122 GATCACACTGTCAGGCGAAAA 58.857 47.619 4.53 0.00 0.00 2.29
3756 4379 1.581934 TCACACTGTCAGGCGAAAAG 58.418 50.000 4.53 0.00 0.00 2.27
3757 4380 1.134521 TCACACTGTCAGGCGAAAAGT 60.135 47.619 4.53 0.00 0.00 2.66
3758 4381 1.261619 CACACTGTCAGGCGAAAAGTC 59.738 52.381 4.53 0.00 0.00 3.01
3759 4382 1.134521 ACACTGTCAGGCGAAAAGTCA 60.135 47.619 4.53 0.00 0.00 3.41
3760 4383 1.939934 CACTGTCAGGCGAAAAGTCAA 59.060 47.619 4.53 0.00 0.00 3.18
3761 4384 2.032549 CACTGTCAGGCGAAAAGTCAAG 60.033 50.000 4.53 0.00 0.00 3.02
3762 4385 2.158957 ACTGTCAGGCGAAAAGTCAAGA 60.159 45.455 4.53 0.00 0.00 3.02
3763 4386 2.210116 TGTCAGGCGAAAAGTCAAGAC 58.790 47.619 0.00 0.00 34.00 3.01
3764 4387 2.210116 GTCAGGCGAAAAGTCAAGACA 58.790 47.619 2.72 0.00 33.73 3.41
3765 4388 2.612212 GTCAGGCGAAAAGTCAAGACAA 59.388 45.455 2.72 0.00 33.73 3.18
3766 4389 3.251004 GTCAGGCGAAAAGTCAAGACAAT 59.749 43.478 2.72 0.00 33.73 2.71
3767 4390 3.498397 TCAGGCGAAAAGTCAAGACAATC 59.502 43.478 2.72 0.00 0.00 2.67
3768 4391 2.480419 AGGCGAAAAGTCAAGACAATCG 59.520 45.455 13.98 13.98 36.61 3.34
3769 4392 2.223377 GGCGAAAAGTCAAGACAATCGT 59.777 45.455 17.26 0.00 36.23 3.73
3770 4393 3.470562 GCGAAAAGTCAAGACAATCGTC 58.529 45.455 17.26 10.13 42.95 4.20
3771 4394 3.664537 GCGAAAAGTCAAGACAATCGTCC 60.665 47.826 17.26 5.06 43.73 4.79
3772 4395 3.493129 CGAAAAGTCAAGACAATCGTCCA 59.507 43.478 2.72 0.00 43.73 4.02
3773 4396 4.376413 CGAAAAGTCAAGACAATCGTCCAG 60.376 45.833 2.72 0.00 43.73 3.86
3774 4397 4.336889 AAAGTCAAGACAATCGTCCAGA 57.663 40.909 2.72 0.00 43.73 3.86
3775 4398 4.543590 AAGTCAAGACAATCGTCCAGAT 57.456 40.909 2.72 0.00 43.73 2.90
3777 4400 4.499183 AGTCAAGACAATCGTCCAGATTC 58.501 43.478 2.72 0.00 45.95 2.52
3778 4401 3.304559 GTCAAGACAATCGTCCAGATTCG 59.695 47.826 0.00 0.00 45.95 3.34
3779 4402 1.927895 AGACAATCGTCCAGATTCGC 58.072 50.000 0.00 0.00 45.95 4.70
3780 4403 0.931005 GACAATCGTCCAGATTCGCC 59.069 55.000 0.00 0.00 45.95 5.54
3781 4404 0.462047 ACAATCGTCCAGATTCGCCC 60.462 55.000 0.00 0.00 45.95 6.13
3782 4405 1.146263 AATCGTCCAGATTCGCCCC 59.854 57.895 0.00 0.00 45.95 5.80
3783 4406 2.325393 AATCGTCCAGATTCGCCCCC 62.325 60.000 0.00 0.00 45.95 5.40
3784 4407 3.781307 CGTCCAGATTCGCCCCCA 61.781 66.667 0.00 0.00 0.00 4.96
3785 4408 2.124695 GTCCAGATTCGCCCCCAC 60.125 66.667 0.00 0.00 0.00 4.61
3786 4409 3.407967 TCCAGATTCGCCCCCACC 61.408 66.667 0.00 0.00 0.00 4.61
3787 4410 4.506255 CCAGATTCGCCCCCACCC 62.506 72.222 0.00 0.00 0.00 4.61
3788 4411 4.506255 CAGATTCGCCCCCACCCC 62.506 72.222 0.00 0.00 0.00 4.95
3819 4442 4.864334 GCCACCCTGCCGATCCTG 62.864 72.222 0.00 0.00 0.00 3.86
3820 4443 4.181010 CCACCCTGCCGATCCTGG 62.181 72.222 0.00 0.00 0.00 4.45
3848 4471 4.740822 GGCCCACCACCGCTTGAT 62.741 66.667 0.00 0.00 35.26 2.57
3849 4472 2.270850 GCCCACCACCGCTTGATA 59.729 61.111 0.00 0.00 0.00 2.15
3850 4473 1.819632 GCCCACCACCGCTTGATAG 60.820 63.158 0.00 0.00 0.00 2.08
3851 4474 1.153168 CCCACCACCGCTTGATAGG 60.153 63.158 0.00 0.00 0.00 2.57
3852 4475 1.819632 CCACCACCGCTTGATAGGC 60.820 63.158 0.00 0.00 0.00 3.93
3853 4476 1.819632 CACCACCGCTTGATAGGCC 60.820 63.158 0.00 0.00 0.00 5.19
3854 4477 1.995626 ACCACCGCTTGATAGGCCT 60.996 57.895 11.78 11.78 0.00 5.19
3855 4478 1.224592 CCACCGCTTGATAGGCCTT 59.775 57.895 12.58 0.00 0.00 4.35
3856 4479 0.815615 CCACCGCTTGATAGGCCTTC 60.816 60.000 12.58 9.40 0.00 3.46
3857 4480 0.815615 CACCGCTTGATAGGCCTTCC 60.816 60.000 12.58 3.40 0.00 3.46
3858 4481 1.227973 CCGCTTGATAGGCCTTCCC 60.228 63.158 12.58 0.36 0.00 3.97
3859 4482 1.227973 CGCTTGATAGGCCTTCCCC 60.228 63.158 12.58 0.00 0.00 4.81
3860 4483 1.227973 GCTTGATAGGCCTTCCCCG 60.228 63.158 12.58 0.00 0.00 5.73
3861 4484 1.227973 CTTGATAGGCCTTCCCCGC 60.228 63.158 12.58 0.00 0.00 6.13
3867 4490 4.360405 GGCCTTCCCCGCCAGAAA 62.360 66.667 0.00 0.00 46.27 2.52
3868 4491 2.282887 GCCTTCCCCGCCAGAAAA 60.283 61.111 0.00 0.00 0.00 2.29
3869 4492 2.343426 GCCTTCCCCGCCAGAAAAG 61.343 63.158 0.00 0.00 0.00 2.27
3870 4493 1.378762 CCTTCCCCGCCAGAAAAGA 59.621 57.895 0.00 0.00 0.00 2.52
3871 4494 0.678048 CCTTCCCCGCCAGAAAAGAG 60.678 60.000 0.00 0.00 0.00 2.85
3872 4495 0.324943 CTTCCCCGCCAGAAAAGAGA 59.675 55.000 0.00 0.00 0.00 3.10
3873 4496 0.324943 TTCCCCGCCAGAAAAGAGAG 59.675 55.000 0.00 0.00 0.00 3.20
3874 4497 0.544357 TCCCCGCCAGAAAAGAGAGA 60.544 55.000 0.00 0.00 0.00 3.10
3875 4498 0.324943 CCCCGCCAGAAAAGAGAGAA 59.675 55.000 0.00 0.00 0.00 2.87
3876 4499 1.677217 CCCCGCCAGAAAAGAGAGAAG 60.677 57.143 0.00 0.00 0.00 2.85
3877 4500 1.677217 CCCGCCAGAAAAGAGAGAAGG 60.677 57.143 0.00 0.00 0.00 3.46
3878 4501 1.002544 CCGCCAGAAAAGAGAGAAGGT 59.997 52.381 0.00 0.00 0.00 3.50
3879 4502 2.551071 CCGCCAGAAAAGAGAGAAGGTT 60.551 50.000 0.00 0.00 0.00 3.50
3880 4503 3.142174 CGCCAGAAAAGAGAGAAGGTTT 58.858 45.455 0.00 0.00 0.00 3.27
3881 4504 3.187432 CGCCAGAAAAGAGAGAAGGTTTC 59.813 47.826 0.00 0.00 0.00 2.78
3882 4505 3.187432 GCCAGAAAAGAGAGAAGGTTTCG 59.813 47.826 0.00 0.00 35.58 3.46
3883 4506 3.187432 CCAGAAAAGAGAGAAGGTTTCGC 59.813 47.826 0.00 0.00 35.58 4.70
3884 4507 3.187432 CAGAAAAGAGAGAAGGTTTCGCC 59.813 47.826 0.00 0.00 35.58 5.54
3885 4508 1.797025 AAAGAGAGAAGGTTTCGCCG 58.203 50.000 0.00 0.00 43.70 6.46
3886 4509 0.670854 AAGAGAGAAGGTTTCGCCGC 60.671 55.000 0.00 0.00 43.70 6.53
3887 4510 2.432628 AGAGAAGGTTTCGCCGCG 60.433 61.111 6.39 6.39 43.70 6.46
3888 4511 3.488090 GAGAAGGTTTCGCCGCGG 61.488 66.667 24.05 24.05 43.70 6.46
3902 4525 4.329545 GCGGCAACCTCTCCACCA 62.330 66.667 0.00 0.00 0.00 4.17
3903 4526 2.358737 CGGCAACCTCTCCACCAC 60.359 66.667 0.00 0.00 0.00 4.16
3904 4527 2.034221 GGCAACCTCTCCACCACC 59.966 66.667 0.00 0.00 0.00 4.61
3905 4528 2.529744 GGCAACCTCTCCACCACCT 61.530 63.158 0.00 0.00 0.00 4.00
3906 4529 1.456287 GCAACCTCTCCACCACCTT 59.544 57.895 0.00 0.00 0.00 3.50
3907 4530 0.606673 GCAACCTCTCCACCACCTTC 60.607 60.000 0.00 0.00 0.00 3.46
3908 4531 0.036875 CAACCTCTCCACCACCTTCC 59.963 60.000 0.00 0.00 0.00 3.46
3909 4532 0.104409 AACCTCTCCACCACCTTCCT 60.104 55.000 0.00 0.00 0.00 3.36
3910 4533 0.838122 ACCTCTCCACCACCTTCCTG 60.838 60.000 0.00 0.00 0.00 3.86
3911 4534 1.557269 CCTCTCCACCACCTTCCTGG 61.557 65.000 0.00 0.00 42.93 4.45
3912 4535 1.538876 TCTCCACCACCTTCCTGGG 60.539 63.158 0.00 0.00 41.11 4.45
3913 4536 3.256960 TCCACCACCTTCCTGGGC 61.257 66.667 0.00 0.00 41.11 5.36
3914 4537 4.722700 CCACCACCTTCCTGGGCG 62.723 72.222 0.00 0.00 41.11 6.13
3915 4538 3.636231 CACCACCTTCCTGGGCGA 61.636 66.667 0.00 0.00 41.11 5.54
3916 4539 3.322466 ACCACCTTCCTGGGCGAG 61.322 66.667 0.00 0.00 41.11 5.03
3917 4540 3.322466 CCACCTTCCTGGGCGAGT 61.322 66.667 0.00 0.00 41.11 4.18
3918 4541 2.750350 CACCTTCCTGGGCGAGTT 59.250 61.111 0.00 0.00 41.11 3.01
3919 4542 1.073199 CACCTTCCTGGGCGAGTTT 59.927 57.895 0.00 0.00 41.11 2.66
3920 4543 0.955919 CACCTTCCTGGGCGAGTTTC 60.956 60.000 0.00 0.00 41.11 2.78
3921 4544 1.377333 CCTTCCTGGGCGAGTTTCC 60.377 63.158 0.00 0.00 0.00 3.13
3922 4545 1.377333 CTTCCTGGGCGAGTTTCCC 60.377 63.158 0.00 0.00 44.17 3.97
3929 4552 3.491652 GCGAGTTTCCCAGCGCTC 61.492 66.667 7.13 0.00 45.41 5.03
3930 4553 2.815647 CGAGTTTCCCAGCGCTCC 60.816 66.667 7.13 0.00 0.00 4.70
3931 4554 2.815647 GAGTTTCCCAGCGCTCCG 60.816 66.667 7.13 0.00 0.00 4.63
3932 4555 3.296709 GAGTTTCCCAGCGCTCCGA 62.297 63.158 7.13 2.05 0.00 4.55
3933 4556 3.119096 GTTTCCCAGCGCTCCGAC 61.119 66.667 7.13 0.00 0.00 4.79
3934 4557 4.388499 TTTCCCAGCGCTCCGACC 62.388 66.667 7.13 0.00 0.00 4.79
3950 4573 4.910585 CCGCGCAGGGTGGGATAC 62.911 72.222 8.75 0.00 42.90 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.299895 CAGCATTAGAGACAAGCGCG 59.700 55.000 0.00 0.00 0.00 6.86
29 30 4.503817 GGGCAGATATCACAGTCAGCATTA 60.504 45.833 5.32 0.00 0.00 1.90
120 121 2.097466 CACAAGCCAACGAGTTCAACTT 59.903 45.455 0.00 0.00 0.00 2.66
142 143 6.206180 AGAAAGAGAAAAGATCAGGGGAAA 57.794 37.500 0.00 0.00 0.00 3.13
263 264 7.017319 ACCAGGCTAGAAAGTACTGTTAAAT 57.983 36.000 0.00 0.00 31.75 1.40
280 281 0.620556 CCTTGTGTATGGACCAGGCT 59.379 55.000 0.00 0.00 0.00 4.58
282 283 2.305927 AGAACCTTGTGTATGGACCAGG 59.694 50.000 0.00 0.00 0.00 4.45
437 451 4.624336 TGCGAAGAGACAGATAAGAGAC 57.376 45.455 0.00 0.00 0.00 3.36
444 458 3.055530 ACCAAAGATGCGAAGAGACAGAT 60.056 43.478 0.00 0.00 0.00 2.90
459 473 1.946768 CCAAGAGAAACGCACCAAAGA 59.053 47.619 0.00 0.00 0.00 2.52
582 598 5.858381 TCATCATACTTATGCTCCCTGTTC 58.142 41.667 0.00 0.00 33.76 3.18
610 635 6.099341 CCAAATATAACAAACTTGTGCTCCC 58.901 40.000 0.00 0.00 41.31 4.30
611 636 6.687604 ACCAAATATAACAAACTTGTGCTCC 58.312 36.000 0.00 0.00 41.31 4.70
637 662 5.873164 GGATGTAACTATCCGAAACTTGTGT 59.127 40.000 0.00 0.00 37.48 3.72
650 675 8.814235 CGACAAATTACTTTCGGATGTAACTAT 58.186 33.333 4.42 0.00 32.43 2.12
651 676 8.028354 TCGACAAATTACTTTCGGATGTAACTA 58.972 33.333 4.42 0.00 32.43 2.24
653 678 7.052565 TCGACAAATTACTTTCGGATGTAAC 57.947 36.000 4.42 0.00 32.43 2.50
654 679 7.655236 TTCGACAAATTACTTTCGGATGTAA 57.345 32.000 4.78 4.78 33.87 2.41
655 680 7.385752 AGTTTCGACAAATTACTTTCGGATGTA 59.614 33.333 0.00 0.00 0.00 2.29
657 682 6.599437 AGTTTCGACAAATTACTTTCGGATG 58.401 36.000 0.00 0.00 0.00 3.51
659 684 6.607735 AAGTTTCGACAAATTACTTTCGGA 57.392 33.333 0.00 0.00 0.00 4.55
660 685 8.225107 TGATAAGTTTCGACAAATTACTTTCGG 58.775 33.333 0.00 0.00 31.94 4.30
661 686 9.588774 TTGATAAGTTTCGACAAATTACTTTCG 57.411 29.630 0.00 0.00 31.94 3.46
664 689 9.659830 GTGTTGATAAGTTTCGACAAATTACTT 57.340 29.630 8.71 0.00 40.76 2.24
665 690 8.007716 CGTGTTGATAAGTTTCGACAAATTACT 58.992 33.333 8.71 0.00 40.76 2.24
666 691 8.005466 TCGTGTTGATAAGTTTCGACAAATTAC 58.995 33.333 8.71 0.00 40.76 1.89
667 692 8.074474 TCGTGTTGATAAGTTTCGACAAATTA 57.926 30.769 8.71 0.00 40.76 1.40
668 693 6.950545 TCGTGTTGATAAGTTTCGACAAATT 58.049 32.000 8.71 0.00 40.76 1.82
669 694 6.533819 TCGTGTTGATAAGTTTCGACAAAT 57.466 33.333 8.71 0.00 40.76 2.32
724 749 6.715347 ATCAATGTTTTGGGATACTAAGCC 57.285 37.500 0.00 0.00 38.75 4.35
745 770 6.565234 TCTCGACCAAGATCAACTTCTAATC 58.435 40.000 0.00 0.00 36.61 1.75
747 772 5.105716 CCTCTCGACCAAGATCAACTTCTAA 60.106 44.000 0.00 0.00 36.61 2.10
830 855 0.536006 GCTCTGGCTTGTGTCTGGTT 60.536 55.000 0.00 0.00 35.22 3.67
888 913 0.251033 GGGAAACGGTTGGCCTAACT 60.251 55.000 3.32 0.00 39.31 2.24
907 932 2.933834 AGGGGTGAACGAAGGGGG 60.934 66.667 0.00 0.00 0.00 5.40
1268 1804 3.396911 GACGATCACGCCGAGCTCA 62.397 63.158 15.40 0.00 43.96 4.26
1313 1849 3.106609 TTTGGGGAGGTGGCCACA 61.107 61.111 35.78 13.05 40.27 4.17
1466 2002 2.571757 CTTAGAGCGTCACCGGCA 59.428 61.111 0.00 0.00 33.68 5.69
2003 2541 5.408356 AGAAAATGCTGCTATCTTTGCTTG 58.592 37.500 0.00 0.00 0.00 4.01
2239 2788 6.432162 TCATGTTTCATTGAGAGAGAAAAGGG 59.568 38.462 0.00 0.00 33.54 3.95
2253 2802 9.877178 CTAGTTAGGACTAGTTCATGTTTCATT 57.123 33.333 3.42 0.00 46.74 2.57
2268 2817 7.735326 ATGTTCACCATAACTAGTTAGGACT 57.265 36.000 24.95 9.57 34.18 3.85
2299 2848 7.747888 TCAACCATGTATGAATTAAACACTCG 58.252 34.615 0.00 0.00 0.00 4.18
2380 2934 4.665292 CGTTTACACGCGAAACAATTACAA 59.335 37.500 15.93 0.00 40.18 2.41
2608 3162 1.649267 CGATCGACGCATCTCTGGA 59.351 57.895 10.26 0.00 34.51 3.86
2723 3277 1.123077 TCTATCCCGAGCTGCAACAT 58.877 50.000 1.02 0.00 0.00 2.71
2736 3290 6.071896 GCCCAAGCTGGTAAATTAATCTATCC 60.072 42.308 0.00 0.00 35.17 2.59
2925 3486 3.243839 CCCCTTGTTTTTGTGTCCATCTG 60.244 47.826 0.00 0.00 0.00 2.90
3030 3603 4.917385 AGGGTGTATACATTTTGCTCACA 58.083 39.130 9.18 0.00 0.00 3.58
3031 3604 5.186198 AGAGGGTGTATACATTTTGCTCAC 58.814 41.667 9.18 0.00 0.00 3.51
3032 3605 5.435686 AGAGGGTGTATACATTTTGCTCA 57.564 39.130 9.18 0.00 0.00 4.26
3033 3606 5.880332 TGAAGAGGGTGTATACATTTTGCTC 59.120 40.000 9.18 3.81 0.00 4.26
3108 3682 4.213564 AGGTTGTTGGAGATGCTCTTAG 57.786 45.455 0.00 0.00 0.00 2.18
3109 3683 4.640771 AAGGTTGTTGGAGATGCTCTTA 57.359 40.909 0.00 0.00 0.00 2.10
3110 3684 3.515602 AAGGTTGTTGGAGATGCTCTT 57.484 42.857 0.00 0.00 0.00 2.85
3111 3685 3.515602 AAAGGTTGTTGGAGATGCTCT 57.484 42.857 0.00 0.00 0.00 4.09
3112 3686 8.854614 ATATATAAAGGTTGTTGGAGATGCTC 57.145 34.615 0.00 0.00 0.00 4.26
3152 3726 8.694540 CCTTCTCTCTTCTCTTTCTATCATCAA 58.305 37.037 0.00 0.00 0.00 2.57
3153 3727 7.838696 ACCTTCTCTCTTCTCTTTCTATCATCA 59.161 37.037 0.00 0.00 0.00 3.07
3238 3819 5.919707 TCATATGTCATTGTGTGTTTTGTGC 59.080 36.000 1.90 0.00 0.00 4.57
3259 3840 9.539825 GATGCGTCTATGATAAATTATCCTCAT 57.460 33.333 10.19 2.32 34.26 2.90
3262 3843 8.314021 TGTGATGCGTCTATGATAAATTATCCT 58.686 33.333 10.19 3.61 34.26 3.24
3263 3844 8.383619 GTGTGATGCGTCTATGATAAATTATCC 58.616 37.037 10.19 0.00 34.26 2.59
3268 3849 6.283694 AGTGTGTGATGCGTCTATGATAAAT 58.716 36.000 7.58 0.00 0.00 1.40
3272 3853 3.808466 AGTGTGTGATGCGTCTATGAT 57.192 42.857 7.58 0.00 0.00 2.45
3277 3858 0.603065 TGCTAGTGTGTGATGCGTCT 59.397 50.000 7.58 0.00 0.00 4.18
3285 3866 7.694388 ATAAATGTACGTATGCTAGTGTGTG 57.306 36.000 0.00 0.00 0.00 3.82
3286 3867 8.407832 TGTATAAATGTACGTATGCTAGTGTGT 58.592 33.333 0.00 0.00 0.00 3.72
3319 3900 3.254903 TGTACGTGTATGAGAGTTGTGCT 59.745 43.478 0.00 0.00 0.00 4.40
3323 3904 3.602489 CGTGTGTACGTGTATGAGAGTTG 59.398 47.826 0.00 0.00 44.99 3.16
3366 3947 0.318022 TGTGCGTGTGTAGGTGTACG 60.318 55.000 0.00 0.00 39.37 3.67
3373 3954 2.417339 ACTAGTGTGTGCGTGTGTAG 57.583 50.000 0.00 0.00 0.00 2.74
3409 4014 3.894782 TGTGCATGTGTATTGTGTGTC 57.105 42.857 0.00 0.00 0.00 3.67
3410 4015 3.379688 TGTTGTGCATGTGTATTGTGTGT 59.620 39.130 0.00 0.00 0.00 3.72
3418 4023 1.328986 CGTGTGTGTTGTGCATGTGTA 59.671 47.619 0.00 0.00 0.00 2.90
3423 4046 1.329292 GTGTACGTGTGTGTTGTGCAT 59.671 47.619 0.00 0.00 31.11 3.96
3428 4051 1.266647 CGTGTGTGTACGTGTGTGTTG 60.267 52.381 0.00 0.00 39.13 3.33
3462 4085 0.648441 GTGTGTGGTGTGTACGTGTG 59.352 55.000 0.00 0.00 0.00 3.82
3482 4105 8.464404 AGTATGTTATGTGTCTGTTGTATACGT 58.536 33.333 0.00 0.00 0.00 3.57
3494 4117 6.204359 CCCGTGTACTAGTATGTTATGTGTC 58.796 44.000 5.75 0.00 0.00 3.67
3498 4121 4.553323 GGCCCGTGTACTAGTATGTTATG 58.447 47.826 5.75 0.00 0.00 1.90
3503 4126 1.405872 TGGGCCCGTGTACTAGTATG 58.594 55.000 19.37 0.00 0.00 2.39
3505 4128 1.216175 AGATGGGCCCGTGTACTAGTA 59.784 52.381 25.05 0.00 0.00 1.82
3541 4164 3.431725 GGCGCGGCTAAAGTTGCT 61.432 61.111 27.05 0.00 0.00 3.91
3542 4165 4.476410 GGGCGCGGCTAAAGTTGC 62.476 66.667 32.30 9.19 0.00 4.17
3543 4166 2.862674 TAGGGGCGCGGCTAAAGTTG 62.863 60.000 32.30 0.00 0.00 3.16
3544 4167 2.187896 TTAGGGGCGCGGCTAAAGTT 62.188 55.000 32.30 13.40 0.00 2.66
3545 4168 1.979619 ATTAGGGGCGCGGCTAAAGT 61.980 55.000 32.30 13.20 0.00 2.66
3546 4169 1.227853 ATTAGGGGCGCGGCTAAAG 60.228 57.895 32.30 0.00 0.00 1.85
3547 4170 1.525077 CATTAGGGGCGCGGCTAAA 60.525 57.895 32.30 22.31 0.00 1.85
3548 4171 2.110213 CATTAGGGGCGCGGCTAA 59.890 61.111 32.30 22.95 0.00 3.09
3549 4172 3.936203 CCATTAGGGGCGCGGCTA 61.936 66.667 32.30 15.26 0.00 3.93
3551 4174 4.643387 ATCCATTAGGGGCGCGGC 62.643 66.667 26.39 26.39 37.22 6.53
3552 4175 2.358737 GATCCATTAGGGGCGCGG 60.359 66.667 8.83 0.00 37.22 6.46
3553 4176 2.358737 GGATCCATTAGGGGCGCG 60.359 66.667 6.95 0.00 37.22 6.86
3554 4177 2.034221 GGGATCCATTAGGGGCGC 59.966 66.667 15.23 0.00 37.22 6.53
3555 4178 2.757077 GGGGATCCATTAGGGGCG 59.243 66.667 15.23 0.00 37.22 6.13
3556 4179 1.778383 TGGGGGATCCATTAGGGGC 60.778 63.158 15.23 0.00 41.46 5.80
3557 4180 0.103930 TCTGGGGGATCCATTAGGGG 60.104 60.000 15.23 0.00 46.01 4.79
3558 4181 1.366319 CTCTGGGGGATCCATTAGGG 58.634 60.000 15.23 3.92 46.01 3.53
3559 4182 0.695347 GCTCTGGGGGATCCATTAGG 59.305 60.000 15.23 0.00 46.01 2.69
3560 4183 0.322975 CGCTCTGGGGGATCCATTAG 59.677 60.000 15.23 8.01 46.01 1.73
3561 4184 0.105194 TCGCTCTGGGGGATCCATTA 60.105 55.000 15.23 0.00 46.01 1.90
3562 4185 1.384502 TCGCTCTGGGGGATCCATT 60.385 57.895 15.23 0.00 46.01 3.16
3563 4186 2.143419 GTCGCTCTGGGGGATCCAT 61.143 63.158 15.23 0.00 46.01 3.41
3564 4187 2.764128 GTCGCTCTGGGGGATCCA 60.764 66.667 15.23 0.00 44.79 3.41
3565 4188 1.627297 AAAGTCGCTCTGGGGGATCC 61.627 60.000 1.92 1.92 39.09 3.36
3566 4189 0.253327 AAAAGTCGCTCTGGGGGATC 59.747 55.000 0.00 0.00 39.09 3.36
3567 4190 0.698818 AAAAAGTCGCTCTGGGGGAT 59.301 50.000 0.00 0.00 39.09 3.85
3568 4191 0.036306 GAAAAAGTCGCTCTGGGGGA 59.964 55.000 0.00 0.00 34.42 4.81
3569 4192 0.960861 GGAAAAAGTCGCTCTGGGGG 60.961 60.000 0.00 0.00 0.00 5.40
3570 4193 0.250727 TGGAAAAAGTCGCTCTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
3571 4194 0.875059 GTGGAAAAAGTCGCTCTGGG 59.125 55.000 0.00 0.00 0.00 4.45
3572 4195 0.512952 CGTGGAAAAAGTCGCTCTGG 59.487 55.000 0.00 0.00 0.00 3.86
3573 4196 0.110644 GCGTGGAAAAAGTCGCTCTG 60.111 55.000 0.00 0.00 44.28 3.35
3574 4197 1.228657 GGCGTGGAAAAAGTCGCTCT 61.229 55.000 8.18 0.00 46.37 4.09
3575 4198 1.206831 GGCGTGGAAAAAGTCGCTC 59.793 57.895 8.18 0.00 46.37 5.03
3576 4199 1.098712 TTGGCGTGGAAAAAGTCGCT 61.099 50.000 8.18 0.00 46.37 4.93
3577 4200 0.933047 GTTGGCGTGGAAAAAGTCGC 60.933 55.000 0.00 0.00 46.42 5.19
3578 4201 0.656205 CGTTGGCGTGGAAAAAGTCG 60.656 55.000 0.00 0.00 0.00 4.18
3579 4202 3.157922 CGTTGGCGTGGAAAAAGTC 57.842 52.632 0.00 0.00 0.00 3.01
3605 4228 1.202879 TGAGGGTGCGACTGGATTTTT 60.203 47.619 0.00 0.00 0.00 1.94
3606 4229 0.400213 TGAGGGTGCGACTGGATTTT 59.600 50.000 0.00 0.00 0.00 1.82
3607 4230 0.400213 TTGAGGGTGCGACTGGATTT 59.600 50.000 0.00 0.00 0.00 2.17
3608 4231 0.036010 CTTGAGGGTGCGACTGGATT 60.036 55.000 0.00 0.00 0.00 3.01
3609 4232 0.904865 TCTTGAGGGTGCGACTGGAT 60.905 55.000 0.00 0.00 0.00 3.41
3610 4233 1.533033 TCTTGAGGGTGCGACTGGA 60.533 57.895 0.00 0.00 0.00 3.86
3611 4234 1.374758 GTCTTGAGGGTGCGACTGG 60.375 63.158 0.00 0.00 0.00 4.00
3612 4235 0.946221 GTGTCTTGAGGGTGCGACTG 60.946 60.000 0.00 0.00 0.00 3.51
3613 4236 1.367840 GTGTCTTGAGGGTGCGACT 59.632 57.895 0.00 0.00 0.00 4.18
3614 4237 1.668151 GGTGTCTTGAGGGTGCGAC 60.668 63.158 0.00 0.00 0.00 5.19
3615 4238 2.741092 GGTGTCTTGAGGGTGCGA 59.259 61.111 0.00 0.00 0.00 5.10
3616 4239 2.709125 TTCGGTGTCTTGAGGGTGCG 62.709 60.000 0.00 0.00 0.00 5.34
3617 4240 0.534203 TTTCGGTGTCTTGAGGGTGC 60.534 55.000 0.00 0.00 0.00 5.01
3618 4241 2.076863 GATTTCGGTGTCTTGAGGGTG 58.923 52.381 0.00 0.00 0.00 4.61
3619 4242 1.003233 GGATTTCGGTGTCTTGAGGGT 59.997 52.381 0.00 0.00 0.00 4.34
3620 4243 1.739067 GGATTTCGGTGTCTTGAGGG 58.261 55.000 0.00 0.00 0.00 4.30
3621 4244 1.359848 CGGATTTCGGTGTCTTGAGG 58.640 55.000 0.00 0.00 34.75 3.86
3622 4245 0.721718 GCGGATTTCGGTGTCTTGAG 59.278 55.000 0.00 0.00 39.69 3.02
3623 4246 0.672401 GGCGGATTTCGGTGTCTTGA 60.672 55.000 0.00 0.00 39.69 3.02
3624 4247 1.794222 GGCGGATTTCGGTGTCTTG 59.206 57.895 0.00 0.00 39.69 3.02
3625 4248 1.740296 CGGCGGATTTCGGTGTCTT 60.740 57.895 0.00 0.00 39.69 3.01
3626 4249 2.125673 CGGCGGATTTCGGTGTCT 60.126 61.111 0.00 0.00 39.69 3.41
3627 4250 3.192922 CCGGCGGATTTCGGTGTC 61.193 66.667 24.41 0.00 41.23 3.67
3644 4267 2.650778 CCCAAAAACAGGCCGAGC 59.349 61.111 0.00 0.00 0.00 5.03
3645 4268 2.650778 GCCCAAAAACAGGCCGAG 59.349 61.111 0.00 0.00 43.76 4.63
3650 4273 2.650778 GCCGAGCCCAAAAACAGG 59.349 61.111 0.00 0.00 0.00 4.00
3651 4274 1.586154 ATCGCCGAGCCCAAAAACAG 61.586 55.000 0.00 0.00 0.00 3.16
3652 4275 1.582610 GATCGCCGAGCCCAAAAACA 61.583 55.000 0.00 0.00 0.00 2.83
3653 4276 1.136774 GATCGCCGAGCCCAAAAAC 59.863 57.895 0.00 0.00 0.00 2.43
3654 4277 2.043980 GGATCGCCGAGCCCAAAAA 61.044 57.895 10.98 0.00 31.04 1.94
3655 4278 2.437716 GGATCGCCGAGCCCAAAA 60.438 61.111 10.98 0.00 31.04 2.44
3665 4288 3.279875 GTTCGGCATGGGATCGCC 61.280 66.667 7.38 3.21 45.28 5.54
3666 4289 2.513666 TGTTCGGCATGGGATCGC 60.514 61.111 2.14 2.14 0.00 4.58
3667 4290 1.431488 CTGTGTTCGGCATGGGATCG 61.431 60.000 0.00 0.00 0.00 3.69
3668 4291 1.718757 GCTGTGTTCGGCATGGGATC 61.719 60.000 0.00 0.00 44.61 3.36
3669 4292 1.750399 GCTGTGTTCGGCATGGGAT 60.750 57.895 0.00 0.00 44.61 3.85
3670 4293 2.359850 GCTGTGTTCGGCATGGGA 60.360 61.111 0.00 0.00 44.61 4.37
3671 4294 3.803082 CGCTGTGTTCGGCATGGG 61.803 66.667 0.00 0.00 45.42 4.00
3672 4295 4.465512 GCGCTGTGTTCGGCATGG 62.466 66.667 0.00 0.00 45.42 3.66
3673 4296 3.725459 TGCGCTGTGTTCGGCATG 61.725 61.111 9.73 0.00 45.42 4.06
3674 4297 3.726517 GTGCGCTGTGTTCGGCAT 61.727 61.111 9.73 0.00 45.42 4.40
3675 4298 4.908687 AGTGCGCTGTGTTCGGCA 62.909 61.111 9.73 0.00 45.42 5.69
3676 4299 4.374702 CAGTGCGCTGTGTTCGGC 62.375 66.667 19.30 0.00 42.06 5.54
3677 4300 3.716006 CCAGTGCGCTGTGTTCGG 61.716 66.667 24.85 5.59 41.02 4.30
3678 4301 3.716006 CCCAGTGCGCTGTGTTCG 61.716 66.667 24.85 9.74 41.02 3.95
3679 4302 3.357079 CCCCAGTGCGCTGTGTTC 61.357 66.667 24.85 0.00 41.02 3.18
3680 4303 4.954970 CCCCCAGTGCGCTGTGTT 62.955 66.667 24.85 0.00 41.02 3.32
3706 4329 2.764637 TTTTCCCTTCCGCTGGAGCC 62.765 60.000 0.00 0.00 37.91 4.70
3707 4330 0.893727 TTTTTCCCTTCCGCTGGAGC 60.894 55.000 0.00 0.00 31.21 4.70
3708 4331 1.839424 ATTTTTCCCTTCCGCTGGAG 58.161 50.000 0.00 0.00 31.21 3.86
3709 4332 2.040545 TGTATTTTTCCCTTCCGCTGGA 59.959 45.455 0.00 0.00 0.00 3.86
3710 4333 2.163613 GTGTATTTTTCCCTTCCGCTGG 59.836 50.000 0.00 0.00 0.00 4.85
3711 4334 2.817258 TGTGTATTTTTCCCTTCCGCTG 59.183 45.455 0.00 0.00 0.00 5.18
3712 4335 3.149005 TGTGTATTTTTCCCTTCCGCT 57.851 42.857 0.00 0.00 0.00 5.52
3713 4336 3.428862 CCATGTGTATTTTTCCCTTCCGC 60.429 47.826 0.00 0.00 0.00 5.54
3714 4337 4.013728 TCCATGTGTATTTTTCCCTTCCG 58.986 43.478 0.00 0.00 0.00 4.30
3715 4338 5.656416 TGATCCATGTGTATTTTTCCCTTCC 59.344 40.000 0.00 0.00 0.00 3.46
3716 4339 6.152661 TGTGATCCATGTGTATTTTTCCCTTC 59.847 38.462 0.00 0.00 0.00 3.46
3717 4340 6.015918 TGTGATCCATGTGTATTTTTCCCTT 58.984 36.000 0.00 0.00 0.00 3.95
3718 4341 5.418840 GTGTGATCCATGTGTATTTTTCCCT 59.581 40.000 0.00 0.00 0.00 4.20
3719 4342 5.418840 AGTGTGATCCATGTGTATTTTTCCC 59.581 40.000 0.00 0.00 0.00 3.97
3720 4343 6.071952 ACAGTGTGATCCATGTGTATTTTTCC 60.072 38.462 0.00 0.00 0.00 3.13
3721 4344 6.913170 ACAGTGTGATCCATGTGTATTTTTC 58.087 36.000 0.00 0.00 0.00 2.29
3722 4345 6.489700 TGACAGTGTGATCCATGTGTATTTTT 59.510 34.615 0.00 0.00 0.00 1.94
3723 4346 6.003326 TGACAGTGTGATCCATGTGTATTTT 58.997 36.000 0.00 0.00 0.00 1.82
3724 4347 5.559770 TGACAGTGTGATCCATGTGTATTT 58.440 37.500 0.00 0.00 0.00 1.40
3725 4348 5.164620 TGACAGTGTGATCCATGTGTATT 57.835 39.130 0.00 0.00 0.00 1.89
3726 4349 4.383444 CCTGACAGTGTGATCCATGTGTAT 60.383 45.833 0.00 0.00 0.00 2.29
3727 4350 3.055891 CCTGACAGTGTGATCCATGTGTA 60.056 47.826 0.00 0.00 0.00 2.90
3728 4351 2.289882 CCTGACAGTGTGATCCATGTGT 60.290 50.000 0.00 0.00 0.00 3.72
3729 4352 2.353323 CCTGACAGTGTGATCCATGTG 58.647 52.381 0.00 0.00 0.00 3.21
3730 4353 1.339438 GCCTGACAGTGTGATCCATGT 60.339 52.381 0.00 0.00 0.00 3.21
3731 4354 1.376543 GCCTGACAGTGTGATCCATG 58.623 55.000 0.00 0.00 0.00 3.66
3732 4355 0.107993 CGCCTGACAGTGTGATCCAT 60.108 55.000 0.00 0.00 0.00 3.41
3733 4356 1.184970 TCGCCTGACAGTGTGATCCA 61.185 55.000 0.00 0.00 0.00 3.41
3734 4357 0.037326 TTCGCCTGACAGTGTGATCC 60.037 55.000 0.00 0.00 0.00 3.36
3735 4358 1.795768 TTTCGCCTGACAGTGTGATC 58.204 50.000 0.00 0.00 0.00 2.92
3736 4359 2.146342 CTTTTCGCCTGACAGTGTGAT 58.854 47.619 0.00 0.00 0.00 3.06
3737 4360 1.134521 ACTTTTCGCCTGACAGTGTGA 60.135 47.619 0.00 0.00 0.00 3.58
3738 4361 1.261619 GACTTTTCGCCTGACAGTGTG 59.738 52.381 0.00 0.23 0.00 3.82
3739 4362 1.134521 TGACTTTTCGCCTGACAGTGT 60.135 47.619 0.00 0.00 0.00 3.55
3740 4363 1.581934 TGACTTTTCGCCTGACAGTG 58.418 50.000 0.93 0.00 0.00 3.66
3741 4364 2.158957 TCTTGACTTTTCGCCTGACAGT 60.159 45.455 0.93 0.00 0.00 3.55
3742 4365 2.221981 GTCTTGACTTTTCGCCTGACAG 59.778 50.000 0.00 0.00 0.00 3.51
3743 4366 2.210116 GTCTTGACTTTTCGCCTGACA 58.790 47.619 0.00 0.00 0.00 3.58
3744 4367 2.210116 TGTCTTGACTTTTCGCCTGAC 58.790 47.619 2.35 0.00 0.00 3.51
3745 4368 2.613026 TGTCTTGACTTTTCGCCTGA 57.387 45.000 2.35 0.00 0.00 3.86
3746 4369 3.665323 CGATTGTCTTGACTTTTCGCCTG 60.665 47.826 2.35 0.00 0.00 4.85
3747 4370 2.480419 CGATTGTCTTGACTTTTCGCCT 59.520 45.455 2.35 0.00 0.00 5.52
3748 4371 2.223377 ACGATTGTCTTGACTTTTCGCC 59.777 45.455 14.97 0.00 0.00 5.54
3749 4372 3.470562 GACGATTGTCTTGACTTTTCGC 58.529 45.455 5.79 8.47 42.08 4.70
3750 4373 3.493129 TGGACGATTGTCTTGACTTTTCG 59.507 43.478 12.89 14.10 44.83 3.46
3751 4374 4.750098 TCTGGACGATTGTCTTGACTTTTC 59.250 41.667 12.89 0.00 44.83 2.29
3752 4375 4.703897 TCTGGACGATTGTCTTGACTTTT 58.296 39.130 12.89 0.00 44.83 2.27
3753 4376 4.336889 TCTGGACGATTGTCTTGACTTT 57.663 40.909 12.89 0.00 44.83 2.66
3754 4377 4.543590 ATCTGGACGATTGTCTTGACTT 57.456 40.909 12.89 0.00 44.83 3.01
3755 4378 4.499183 GAATCTGGACGATTGTCTTGACT 58.501 43.478 12.89 1.84 42.31 3.41
3756 4379 3.304559 CGAATCTGGACGATTGTCTTGAC 59.695 47.826 12.89 0.00 42.31 3.18
3757 4380 3.511699 CGAATCTGGACGATTGTCTTGA 58.488 45.455 12.89 11.07 42.31 3.02
3758 4381 2.029728 GCGAATCTGGACGATTGTCTTG 59.970 50.000 12.89 6.34 42.31 3.02
3759 4382 2.271800 GCGAATCTGGACGATTGTCTT 58.728 47.619 12.89 0.00 42.31 3.01
3760 4383 1.471676 GGCGAATCTGGACGATTGTCT 60.472 52.381 12.89 0.00 42.31 3.41
3761 4384 0.931005 GGCGAATCTGGACGATTGTC 59.069 55.000 4.31 4.31 42.31 3.18
3762 4385 0.462047 GGGCGAATCTGGACGATTGT 60.462 55.000 0.00 0.00 42.31 2.71
3763 4386 1.160329 GGGGCGAATCTGGACGATTG 61.160 60.000 0.00 0.00 42.31 2.67
3764 4387 1.146263 GGGGCGAATCTGGACGATT 59.854 57.895 0.00 0.00 44.87 3.34
3765 4388 2.808206 GGGGGCGAATCTGGACGAT 61.808 63.158 0.00 0.00 0.00 3.73
3766 4389 3.467226 GGGGGCGAATCTGGACGA 61.467 66.667 0.00 0.00 0.00 4.20
3767 4390 3.781307 TGGGGGCGAATCTGGACG 61.781 66.667 0.00 0.00 0.00 4.79
3768 4391 2.124695 GTGGGGGCGAATCTGGAC 60.125 66.667 0.00 0.00 0.00 4.02
3769 4392 3.407967 GGTGGGGGCGAATCTGGA 61.408 66.667 0.00 0.00 0.00 3.86
3770 4393 4.506255 GGGTGGGGGCGAATCTGG 62.506 72.222 0.00 0.00 0.00 3.86
3771 4394 4.506255 GGGGTGGGGGCGAATCTG 62.506 72.222 0.00 0.00 0.00 2.90
3802 4425 4.864334 CAGGATCGGCAGGGTGGC 62.864 72.222 0.00 0.00 39.85 5.01
3803 4426 4.181010 CCAGGATCGGCAGGGTGG 62.181 72.222 0.00 0.00 0.00 4.61
3831 4454 3.338275 TATCAAGCGGTGGTGGGCC 62.338 63.158 0.00 0.00 0.00 5.80
3832 4455 1.819632 CTATCAAGCGGTGGTGGGC 60.820 63.158 0.00 0.00 0.00 5.36
3833 4456 1.153168 CCTATCAAGCGGTGGTGGG 60.153 63.158 0.00 0.00 31.74 4.61
3834 4457 1.819632 GCCTATCAAGCGGTGGTGG 60.820 63.158 0.00 0.00 0.00 4.61
3835 4458 1.819632 GGCCTATCAAGCGGTGGTG 60.820 63.158 0.00 0.00 0.00 4.17
3836 4459 1.562672 AAGGCCTATCAAGCGGTGGT 61.563 55.000 5.16 0.00 0.00 4.16
3837 4460 0.815615 GAAGGCCTATCAAGCGGTGG 60.816 60.000 5.16 0.00 0.00 4.61
3838 4461 0.815615 GGAAGGCCTATCAAGCGGTG 60.816 60.000 5.16 0.00 0.00 4.94
3839 4462 1.527370 GGAAGGCCTATCAAGCGGT 59.473 57.895 5.16 0.00 0.00 5.68
3840 4463 1.227973 GGGAAGGCCTATCAAGCGG 60.228 63.158 5.16 0.00 0.00 5.52
3841 4464 1.227973 GGGGAAGGCCTATCAAGCG 60.228 63.158 5.16 0.00 0.00 4.68
3842 4465 1.227973 CGGGGAAGGCCTATCAAGC 60.228 63.158 5.16 0.00 0.00 4.01
3843 4466 1.227973 GCGGGGAAGGCCTATCAAG 60.228 63.158 5.16 0.00 0.00 3.02
3844 4467 2.915869 GCGGGGAAGGCCTATCAA 59.084 61.111 5.16 0.00 0.00 2.57
3851 4474 2.282887 TTTTCTGGCGGGGAAGGC 60.283 61.111 0.00 0.00 37.19 4.35
3852 4475 0.678048 CTCTTTTCTGGCGGGGAAGG 60.678 60.000 8.90 0.00 0.00 3.46
3853 4476 0.324943 TCTCTTTTCTGGCGGGGAAG 59.675 55.000 0.00 0.00 0.00 3.46
3854 4477 0.324943 CTCTCTTTTCTGGCGGGGAA 59.675 55.000 0.00 0.00 0.00 3.97
3855 4478 0.544357 TCTCTCTTTTCTGGCGGGGA 60.544 55.000 0.00 0.00 0.00 4.81
3856 4479 0.324943 TTCTCTCTTTTCTGGCGGGG 59.675 55.000 0.00 0.00 0.00 5.73
3857 4480 1.677217 CCTTCTCTCTTTTCTGGCGGG 60.677 57.143 0.00 0.00 0.00 6.13
3858 4481 1.002544 ACCTTCTCTCTTTTCTGGCGG 59.997 52.381 0.00 0.00 0.00 6.13
3859 4482 2.464157 ACCTTCTCTCTTTTCTGGCG 57.536 50.000 0.00 0.00 0.00 5.69
3860 4483 3.187432 CGAAACCTTCTCTCTTTTCTGGC 59.813 47.826 0.00 0.00 0.00 4.85
3861 4484 3.187432 GCGAAACCTTCTCTCTTTTCTGG 59.813 47.826 0.00 0.00 0.00 3.86
3862 4485 3.187432 GGCGAAACCTTCTCTCTTTTCTG 59.813 47.826 0.00 0.00 34.51 3.02
3863 4486 3.403968 GGCGAAACCTTCTCTCTTTTCT 58.596 45.455 0.00 0.00 34.51 2.52
3864 4487 2.157863 CGGCGAAACCTTCTCTCTTTTC 59.842 50.000 0.00 0.00 35.61 2.29
3865 4488 2.143925 CGGCGAAACCTTCTCTCTTTT 58.856 47.619 0.00 0.00 35.61 2.27
3866 4489 1.797025 CGGCGAAACCTTCTCTCTTT 58.203 50.000 0.00 0.00 35.61 2.52
3867 4490 0.670854 GCGGCGAAACCTTCTCTCTT 60.671 55.000 12.98 0.00 35.61 2.85
3868 4491 1.079750 GCGGCGAAACCTTCTCTCT 60.080 57.895 12.98 0.00 35.61 3.10
3869 4492 2.445438 CGCGGCGAAACCTTCTCTC 61.445 63.158 19.16 0.00 35.61 3.20
3870 4493 2.432628 CGCGGCGAAACCTTCTCT 60.433 61.111 19.16 0.00 35.61 3.10
3871 4494 3.488090 CCGCGGCGAAACCTTCTC 61.488 66.667 25.92 0.00 35.61 2.87
3885 4508 4.329545 TGGTGGAGAGGTTGCCGC 62.330 66.667 0.00 0.00 0.00 6.53
3886 4509 2.358737 GTGGTGGAGAGGTTGCCG 60.359 66.667 0.00 0.00 0.00 5.69
3887 4510 2.034221 GGTGGTGGAGAGGTTGCC 59.966 66.667 0.00 0.00 0.00 4.52
3888 4511 0.606673 GAAGGTGGTGGAGAGGTTGC 60.607 60.000 0.00 0.00 0.00 4.17
3889 4512 0.036875 GGAAGGTGGTGGAGAGGTTG 59.963 60.000 0.00 0.00 0.00 3.77
3890 4513 0.104409 AGGAAGGTGGTGGAGAGGTT 60.104 55.000 0.00 0.00 0.00 3.50
3891 4514 0.838122 CAGGAAGGTGGTGGAGAGGT 60.838 60.000 0.00 0.00 0.00 3.85
3892 4515 1.557269 CCAGGAAGGTGGTGGAGAGG 61.557 65.000 0.00 0.00 32.60 3.69
3893 4516 1.557269 CCCAGGAAGGTGGTGGAGAG 61.557 65.000 0.00 0.00 35.60 3.20
3894 4517 1.538876 CCCAGGAAGGTGGTGGAGA 60.539 63.158 0.00 0.00 35.60 3.71
3895 4518 3.081554 CCCAGGAAGGTGGTGGAG 58.918 66.667 0.00 0.00 35.60 3.86
3896 4519 3.256960 GCCCAGGAAGGTGGTGGA 61.257 66.667 0.00 0.00 35.60 4.02
3897 4520 4.722700 CGCCCAGGAAGGTGGTGG 62.723 72.222 0.00 0.00 35.60 4.61
3898 4521 3.612247 CTCGCCCAGGAAGGTGGTG 62.612 68.421 0.00 0.00 38.02 4.17
3899 4522 3.322466 CTCGCCCAGGAAGGTGGT 61.322 66.667 0.00 0.00 38.02 4.16
3900 4523 2.411765 AAACTCGCCCAGGAAGGTGG 62.412 60.000 0.00 0.00 38.02 4.61
3901 4524 0.955919 GAAACTCGCCCAGGAAGGTG 60.956 60.000 0.00 0.00 38.86 4.00
3902 4525 1.375326 GAAACTCGCCCAGGAAGGT 59.625 57.895 0.00 0.00 34.66 3.50
3903 4526 1.377333 GGAAACTCGCCCAGGAAGG 60.377 63.158 0.00 0.00 37.03 3.46
3904 4527 1.377333 GGGAAACTCGCCCAGGAAG 60.377 63.158 0.00 0.00 45.31 3.46
3905 4528 2.754375 GGGAAACTCGCCCAGGAA 59.246 61.111 0.00 0.00 45.31 3.36
3912 4535 3.491652 GAGCGCTGGGAAACTCGC 61.492 66.667 18.48 0.00 46.95 5.03
3913 4536 2.815647 GGAGCGCTGGGAAACTCG 60.816 66.667 18.48 0.00 0.00 4.18
3914 4537 2.815647 CGGAGCGCTGGGAAACTC 60.816 66.667 18.48 0.00 0.00 3.01
3915 4538 3.311110 TCGGAGCGCTGGGAAACT 61.311 61.111 18.48 0.00 0.00 2.66
3916 4539 3.119096 GTCGGAGCGCTGGGAAAC 61.119 66.667 18.48 0.00 0.00 2.78
3917 4540 4.388499 GGTCGGAGCGCTGGGAAA 62.388 66.667 18.48 0.00 0.00 3.13
3933 4556 4.910585 GTATCCCACCCTGCGCGG 62.911 72.222 9.96 9.96 0.00 6.46
3934 4557 4.910585 GGTATCCCACCCTGCGCG 62.911 72.222 0.00 0.00 42.07 6.86
3935 4558 4.910585 CGGTATCCCACCCTGCGC 62.911 72.222 0.00 0.00 45.52 6.09
3936 4559 4.235762 CCGGTATCCCACCCTGCG 62.236 72.222 0.00 0.00 45.52 5.18
3937 4560 3.087906 ACCGGTATCCCACCCTGC 61.088 66.667 4.49 0.00 45.52 4.85
3938 4561 2.742116 CCACCGGTATCCCACCCTG 61.742 68.421 6.87 0.00 45.52 4.45
3939 4562 2.366435 CCACCGGTATCCCACCCT 60.366 66.667 6.87 0.00 45.52 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.