Multiple sequence alignment - TraesCS3A01G254200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G254200 chr3A 100.000 5418 0 0 1 5418 475723316 475717899 0.000000e+00 10006.0
1 TraesCS3A01G254200 chr3D 96.605 4212 89 13 730 4899 356828109 356823910 0.000000e+00 6937.0
2 TraesCS3A01G254200 chr3D 89.434 265 16 5 301 554 356845175 356844912 1.880000e-84 324.0
3 TraesCS3A01G254200 chr3B 96.843 2439 41 15 730 3142 457971225 457968797 0.000000e+00 4045.0
4 TraesCS3A01G254200 chr3B 97.626 1769 26 9 3141 4905 457968683 457966927 0.000000e+00 3020.0
5 TraesCS3A01G254200 chr3B 99.273 275 2 0 730 1004 457971589 457971315 1.050000e-136 497.0
6 TraesCS3A01G254200 chr3B 93.769 321 17 3 32 350 457972271 457971952 3.800000e-131 479.0
7 TraesCS3A01G254200 chr3B 97.297 148 4 0 5017 5164 457966920 457966773 9.010000e-63 252.0
8 TraesCS3A01G254200 chr3B 93.798 129 4 1 5161 5289 457966738 457966614 1.990000e-44 191.0
9 TraesCS3A01G254200 chr5B 86.905 420 36 12 3 406 652526200 652526616 2.300000e-123 453.0
10 TraesCS3A01G254200 chr1A 86.256 422 36 12 3 407 5177770 5178186 6.440000e-119 438.0
11 TraesCS3A01G254200 chr1A 86.052 423 35 12 3 407 5247242 5247658 3.000000e-117 433.0
12 TraesCS3A01G254200 chr1A 85.782 422 37 13 3 407 5195870 5196285 5.020000e-115 425.0
13 TraesCS3A01G254200 chr1A 89.881 336 27 7 5 339 5368577 5368906 5.020000e-115 425.0
14 TraesCS3A01G254200 chr1A 88.496 339 31 8 3 339 5333209 5333541 2.350000e-108 403.0
15 TraesCS3A01G254200 chr1A 79.948 384 56 17 998 1378 544588462 544588097 4.160000e-66 263.0
16 TraesCS3A01G254200 chr1A 91.603 131 10 1 5289 5418 480808610 480808480 4.310000e-41 180.0
17 TraesCS3A01G254200 chr1D 86.473 414 35 10 8 407 3802464 3802870 8.330000e-118 435.0
18 TraesCS3A01G254200 chr1D 79.644 393 60 13 998 1378 449457792 449457408 1.160000e-66 265.0
19 TraesCS3A01G254200 chr1D 77.083 384 66 16 1645 2018 449457142 449456771 9.200000e-48 202.0
20 TraesCS3A01G254200 chr1D 91.603 131 9 2 5289 5418 356221805 356221676 4.310000e-41 180.0
21 TraesCS3A01G254200 chr1D 90.299 134 12 1 5286 5418 476577471 476577604 2.010000e-39 174.0
22 TraesCS3A01G254200 chrUn 89.318 337 29 7 5 339 281342911 281342580 3.020000e-112 416.0
23 TraesCS3A01G254200 chr7D 83.066 437 35 15 6 407 237402872 237402440 1.430000e-95 361.0
24 TraesCS3A01G254200 chr7D 91.791 134 10 1 5286 5418 45592652 45592785 9.270000e-43 185.0
25 TraesCS3A01G254200 chr7D 89.552 134 13 1 5286 5418 63727195 63727328 9.330000e-38 169.0
26 TraesCS3A01G254200 chr7D 90.076 131 12 1 5289 5418 452713929 452714059 9.330000e-38 169.0
27 TraesCS3A01G254200 chr1B 80.357 392 53 21 998 1378 615113090 615112712 5.350000e-70 276.0
28 TraesCS3A01G254200 chr6D 92.593 135 9 1 5285 5418 340112830 340112964 5.540000e-45 193.0
29 TraesCS3A01G254200 chr7B 92.366 131 9 1 5289 5418 1385152 1385022 9.270000e-43 185.0
30 TraesCS3A01G254200 chr5D 90.152 132 11 2 5287 5416 286475375 286475244 2.590000e-38 171.0
31 TraesCS3A01G254200 chr7A 85.470 117 16 1 557 673 669921472 669921357 2.650000e-23 121.0
32 TraesCS3A01G254200 chr6A 84.874 119 18 0 556 674 96609291 96609173 2.650000e-23 121.0
33 TraesCS3A01G254200 chr4A 95.000 40 2 0 557 596 598111382 598111343 4.530000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G254200 chr3A 475717899 475723316 5417 True 10006.0 10006 100.000000 1 5418 1 chr3A.!!$R1 5417
1 TraesCS3A01G254200 chr3D 356823910 356828109 4199 True 6937.0 6937 96.605000 730 4899 1 chr3D.!!$R1 4169
2 TraesCS3A01G254200 chr3B 457966614 457972271 5657 True 1414.0 4045 96.434333 32 5289 6 chr3B.!!$R1 5257
3 TraesCS3A01G254200 chr1D 449456771 449457792 1021 True 233.5 265 78.363500 998 2018 2 chr1D.!!$R2 1020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 462 0.539518 GGGTTTGTTTTGTGTGCCCT 59.460 50.000 0.00 0.0 0.00 5.19 F
1284 1695 0.672401 CGGGCGTCACCTACATGTTT 60.672 55.000 2.30 0.0 39.10 2.83 F
1353 1764 2.268802 CGCCGCTAGCATCCTCCTA 61.269 63.158 16.45 0.0 44.04 2.94 F
2429 2887 2.295253 CGATAAGCTTCGTGGTTCCT 57.705 50.000 0.00 0.0 37.56 3.36 F
4059 4666 2.061773 CCTGTGTTGCTAGTCGAAGTG 58.938 52.381 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1863 1.070175 GCGTACAAAGCACGTGAACAT 60.070 47.619 22.23 2.18 41.41 2.71 R
2560 3018 0.035630 ACTCACAGCTCAATGCCTCC 60.036 55.000 0.00 0.00 44.23 4.30 R
2892 3381 1.696884 TCAACCTGACATGTACCAGCA 59.303 47.619 0.00 0.00 0.00 4.41 R
4278 4885 2.767505 ACTTTTTACTCGAGGTGCCAG 58.232 47.619 18.41 9.30 0.00 4.85 R
5350 6007 0.036765 TCCCGACGCACTAAAATGCT 60.037 50.000 0.00 0.00 43.80 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.965033 ATGGGGTGGATATCAGATGATAC 57.035 43.478 4.83 0.00 39.57 2.24
24 25 4.104086 TGGGGTGGATATCAGATGATACC 58.896 47.826 4.83 8.88 39.57 2.73
25 26 4.104086 GGGGTGGATATCAGATGATACCA 58.896 47.826 14.74 14.74 39.57 3.25
26 27 4.080863 GGGGTGGATATCAGATGATACCAC 60.081 50.000 26.33 26.33 45.55 4.16
30 31 7.667575 GTGGATATCAGATGATACCACCTAT 57.332 40.000 25.24 7.23 43.60 2.57
58 59 4.830046 TGCTCCCATGCTACAAGTTTTAAA 59.170 37.500 0.00 0.00 0.00 1.52
226 227 8.270799 GTCATTTCTGACATTGTTCATGTTTTG 58.729 33.333 1.01 0.00 46.96 2.44
237 238 8.577110 CATTGTTCATGTTTTGTTTTCTTTTGC 58.423 29.630 0.00 0.00 0.00 3.68
249 250 7.945033 TGTTTTCTTTTGCCACTATTCATTC 57.055 32.000 0.00 0.00 0.00 2.67
250 251 7.495901 TGTTTTCTTTTGCCACTATTCATTCA 58.504 30.769 0.00 0.00 0.00 2.57
260 261 6.660521 TGCCACTATTCATTCAAGATTTGTCT 59.339 34.615 0.00 0.00 0.00 3.41
320 321 8.778059 TCAGATATTTTTAGGGGTTGTAGACAT 58.222 33.333 0.00 0.00 0.00 3.06
321 322 9.408648 CAGATATTTTTAGGGGTTGTAGACATT 57.591 33.333 0.00 0.00 0.00 2.71
341 342 7.707624 ACATTTGTCTTGTGAACATCCATAT 57.292 32.000 0.00 0.00 0.00 1.78
344 357 9.426837 CATTTGTCTTGTGAACATCCATATTTT 57.573 29.630 0.00 0.00 0.00 1.82
386 399 9.775854 TGTGATTTTTGAAAAATGGTATCATGT 57.224 25.926 19.47 0.00 33.18 3.21
401 414 9.739276 ATGGTATCATGTAACATATAAAGGGTG 57.261 33.333 4.61 0.00 31.34 4.61
402 415 8.160765 TGGTATCATGTAACATATAAAGGGTGG 58.839 37.037 0.00 0.00 0.00 4.61
403 416 8.161425 GGTATCATGTAACATATAAAGGGTGGT 58.839 37.037 0.00 0.00 0.00 4.16
406 419 9.959721 ATCATGTAACATATAAAGGGTGGTATC 57.040 33.333 0.00 0.00 0.00 2.24
407 420 9.166222 TCATGTAACATATAAAGGGTGGTATCT 57.834 33.333 0.00 0.00 0.00 1.98
408 421 9.793259 CATGTAACATATAAAGGGTGGTATCTT 57.207 33.333 0.00 0.00 0.00 2.40
411 424 9.433153 GTAACATATAAAGGGTGGTATCTTAGC 57.567 37.037 0.00 0.00 0.00 3.09
412 425 7.873699 ACATATAAAGGGTGGTATCTTAGCT 57.126 36.000 0.00 0.00 0.00 3.32
413 426 8.967779 ACATATAAAGGGTGGTATCTTAGCTA 57.032 34.615 0.00 0.00 0.00 3.32
423 436 2.418983 ATCTTAGCTAGCGCGGTTAC 57.581 50.000 19.09 9.38 42.32 2.50
442 455 5.127519 GGTTACTTGTAGGGGTTTGTTTTGT 59.872 40.000 0.00 0.00 0.00 2.83
443 456 4.729227 ACTTGTAGGGGTTTGTTTTGTG 57.271 40.909 0.00 0.00 0.00 3.33
444 457 4.090819 ACTTGTAGGGGTTTGTTTTGTGT 58.909 39.130 0.00 0.00 0.00 3.72
445 458 4.081917 ACTTGTAGGGGTTTGTTTTGTGTG 60.082 41.667 0.00 0.00 0.00 3.82
446 459 2.166664 TGTAGGGGTTTGTTTTGTGTGC 59.833 45.455 0.00 0.00 0.00 4.57
449 462 0.539518 GGGTTTGTTTTGTGTGCCCT 59.460 50.000 0.00 0.00 0.00 5.19
451 464 1.205893 GGTTTGTTTTGTGTGCCCTCA 59.794 47.619 0.00 0.00 0.00 3.86
453 466 3.530535 GTTTGTTTTGTGTGCCCTCAAT 58.469 40.909 0.00 0.00 0.00 2.57
456 470 3.529533 TGTTTTGTGTGCCCTCAATTTG 58.470 40.909 0.00 0.00 0.00 2.32
461 475 3.826524 TGTGTGCCCTCAATTTGACTTA 58.173 40.909 0.00 0.00 0.00 2.24
469 483 5.624509 GCCCTCAATTTGACTTATTTGGTCC 60.625 44.000 0.00 0.00 33.22 4.46
492 506 5.397326 CCTATTGCACTCTCTTTGCTTTTC 58.603 41.667 0.00 0.00 40.86 2.29
502 516 6.153510 ACTCTCTTTGCTTTTCTTTTGAACCT 59.846 34.615 0.00 0.00 38.30 3.50
512 526 7.469537 TTTTCTTTTGAACCTGTGAACCTTA 57.530 32.000 0.00 0.00 38.30 2.69
515 529 7.654022 TCTTTTGAACCTGTGAACCTTAAAT 57.346 32.000 0.00 0.00 0.00 1.40
529 543 4.944048 ACCTTAAATCTTGTTGTGGTTGC 58.056 39.130 0.00 0.00 0.00 4.17
540 554 1.042003 TGTGGTTGCATGCTTGGTGT 61.042 50.000 20.33 0.00 0.00 4.16
562 576 8.578151 GGTGTGGTTGTTTTATTTAATACTCCA 58.422 33.333 0.00 0.00 0.00 3.86
570 584 9.451002 TGTTTTATTTAATACTCCATCCGTTCA 57.549 29.630 0.00 0.00 0.00 3.18
571 585 9.931210 GTTTTATTTAATACTCCATCCGTTCAG 57.069 33.333 0.00 0.00 0.00 3.02
577 591 8.882415 TTAATACTCCATCCGTTCAGAAATAC 57.118 34.615 0.00 0.00 0.00 1.89
578 592 6.732896 ATACTCCATCCGTTCAGAAATACT 57.267 37.500 0.00 0.00 0.00 2.12
583 597 4.032900 CCATCCGTTCAGAAATACTTGTCG 59.967 45.833 0.00 0.00 0.00 4.35
584 598 3.581755 TCCGTTCAGAAATACTTGTCGG 58.418 45.455 0.00 0.00 37.29 4.79
586 600 3.612860 CCGTTCAGAAATACTTGTCGGAG 59.387 47.826 0.00 0.00 38.03 4.63
587 601 4.482386 CGTTCAGAAATACTTGTCGGAGA 58.518 43.478 0.00 0.00 0.00 3.71
588 602 4.921515 CGTTCAGAAATACTTGTCGGAGAA 59.078 41.667 0.00 0.00 39.69 2.87
589 603 5.404366 CGTTCAGAAATACTTGTCGGAGAAA 59.596 40.000 0.00 0.00 39.69 2.52
592 606 6.697395 TCAGAAATACTTGTCGGAGAAATGA 58.303 36.000 0.00 0.00 39.69 2.57
594 608 7.824289 TCAGAAATACTTGTCGGAGAAATGAAT 59.176 33.333 0.00 0.00 39.69 2.57
595 609 9.098355 CAGAAATACTTGTCGGAGAAATGAATA 57.902 33.333 0.00 0.00 39.69 1.75
596 610 9.838339 AGAAATACTTGTCGGAGAAATGAATAT 57.162 29.630 0.00 0.00 39.69 1.28
667 681 4.873817 TGACAAGTATTTTCGAACGGAGA 58.126 39.130 0.00 0.00 0.00 3.71
674 688 7.098074 AGTATTTTCGAACGGAGAGAGTATT 57.902 36.000 0.00 0.00 0.00 1.89
677 691 9.460906 GTATTTTCGAACGGAGAGAGTATTAAT 57.539 33.333 0.00 0.00 0.00 1.40
679 693 9.680315 ATTTTCGAACGGAGAGAGTATTAATAG 57.320 33.333 0.00 0.00 0.00 1.73
680 694 8.442632 TTTCGAACGGAGAGAGTATTAATAGA 57.557 34.615 0.00 0.00 0.00 1.98
681 695 8.442632 TTCGAACGGAGAGAGTATTAATAGAA 57.557 34.615 0.00 0.00 0.00 2.10
682 696 8.442632 TCGAACGGAGAGAGTATTAATAGAAA 57.557 34.615 0.00 0.00 0.00 2.52
683 697 8.896744 TCGAACGGAGAGAGTATTAATAGAAAA 58.103 33.333 0.00 0.00 0.00 2.29
684 698 9.512435 CGAACGGAGAGAGTATTAATAGAAAAA 57.488 33.333 0.00 0.00 0.00 1.94
686 700 8.853469 ACGGAGAGAGTATTAATAGAAAAACG 57.147 34.615 0.00 0.00 0.00 3.60
687 701 7.919621 ACGGAGAGAGTATTAATAGAAAAACGG 59.080 37.037 0.00 0.00 0.00 4.44
690 704 7.506971 AGAGAGTATTAATAGAAAAACGGGGG 58.493 38.462 0.00 0.00 0.00 5.40
711 725 3.470567 CTCTCCAACGTCGTGCGC 61.471 66.667 0.00 0.00 46.11 6.09
1284 1695 0.672401 CGGGCGTCACCTACATGTTT 60.672 55.000 2.30 0.00 39.10 2.83
1353 1764 2.268802 CGCCGCTAGCATCCTCCTA 61.269 63.158 16.45 0.00 44.04 2.94
1431 1863 6.038161 CACATTGGGAATTTGAGCGTCTAATA 59.962 38.462 0.00 0.00 0.00 0.98
1438 1870 7.126398 GGAATTTGAGCGTCTAATATGTTCAC 58.874 38.462 0.00 0.00 34.45 3.18
1448 1880 6.034150 CGTCTAATATGTTCACGTGCTTTGTA 59.966 38.462 11.67 0.40 0.00 2.41
1604 2041 6.402222 TGTTTTCAAGTTTGCTGGTAATTGT 58.598 32.000 0.00 0.00 0.00 2.71
1639 2076 9.809096 GACACATGATCTTTCTGTATCTTCTAA 57.191 33.333 0.00 0.00 0.00 2.10
1845 2282 7.064609 CGAAGTAGGTTGATTTATCTTTGCTCA 59.935 37.037 0.00 0.00 0.00 4.26
2040 2498 5.062558 GTGAGTTTGCAATATCATTTGTGGC 59.937 40.000 14.91 0.63 0.00 5.01
2429 2887 2.295253 CGATAAGCTTCGTGGTTCCT 57.705 50.000 0.00 0.00 37.56 3.36
2560 3018 5.255710 TGACCAACAAACAAGTTATGGTG 57.744 39.130 17.33 11.81 30.54 4.17
2595 3053 4.133820 TGTGAGTGGTGACCATTAAACAG 58.866 43.478 7.94 0.00 35.28 3.16
2674 3163 5.635700 GGAAGATGTTCTAGCGATATTGGTC 59.364 44.000 2.24 0.00 32.72 4.02
2675 3164 6.412362 AAGATGTTCTAGCGATATTGGTCT 57.588 37.500 0.00 0.00 0.00 3.85
2676 3165 6.412362 AGATGTTCTAGCGATATTGGTCTT 57.588 37.500 0.00 0.00 0.00 3.01
2798 3287 7.493971 GTGGACATGCTATATCCTGATAATCAC 59.506 40.741 0.00 0.00 33.34 3.06
2892 3381 2.729194 ACCGAGAGAAGAGTATGCTGT 58.271 47.619 0.00 0.00 0.00 4.40
2958 3447 9.197694 GCATCATATATAATCCGTCTTGTATCC 57.802 37.037 0.00 0.00 0.00 2.59
2975 3464 4.401519 TGTATCCTACAAAGAGGTCCTTCG 59.598 45.833 0.00 0.00 37.88 3.79
3501 4106 4.277672 CGATTGGCCAGATTTGAGAATGAT 59.722 41.667 5.11 0.00 0.00 2.45
4059 4666 2.061773 CCTGTGTTGCTAGTCGAAGTG 58.938 52.381 0.00 0.00 0.00 3.16
4067 4674 3.511699 TGCTAGTCGAAGTGTGCTAATG 58.488 45.455 0.00 0.00 0.00 1.90
4219 4826 3.383825 ACTGTATCGGGTATTCAGGTGAC 59.616 47.826 0.00 0.00 37.32 3.67
4227 4834 3.315749 GGGTATTCAGGTGACGAGACTAG 59.684 52.174 0.00 0.00 0.00 2.57
4278 4885 9.431887 TCACAGGTACTATTGTATGTTTTTCTC 57.568 33.333 0.00 0.00 36.02 2.87
4304 4912 4.435651 GCACCTCGAGTAAAAAGTATGCAC 60.436 45.833 12.31 0.00 0.00 4.57
4305 4913 4.688879 CACCTCGAGTAAAAAGTATGCACA 59.311 41.667 12.31 0.00 0.00 4.57
4310 4918 6.598525 TCGAGTAAAAAGTATGCACAATGTG 58.401 36.000 9.36 9.36 36.51 3.21
4311 4919 6.203915 TCGAGTAAAAAGTATGCACAATGTGT 59.796 34.615 15.36 0.00 35.75 3.72
4314 4922 8.940768 AGTAAAAAGTATGCACAATGTGTTTT 57.059 26.923 15.36 13.62 35.75 2.43
4566 5174 2.966309 GCTGTAGCGCGCAAGGTTT 61.966 57.895 35.10 14.29 38.28 3.27
4795 5413 4.899502 TGCTTTTGAAGTTTGGGTTGAAA 58.100 34.783 0.00 0.00 0.00 2.69
4802 5420 6.067263 TGAAGTTTGGGTTGAAACTATTCG 57.933 37.500 0.00 0.00 43.83 3.34
4807 5425 2.039216 TGGGTTGAAACTATTCGAGGCA 59.961 45.455 0.00 0.00 38.46 4.75
4813 5431 6.315393 GGTTGAAACTATTCGAGGCATTTCTA 59.685 38.462 12.55 5.59 38.46 2.10
4853 5471 7.042992 GGTGGACGGAGAAAATAAAACAAAAAG 60.043 37.037 0.00 0.00 0.00 2.27
4905 5524 1.002430 GATCCTCCATGCGGCTAATGA 59.998 52.381 0.00 0.00 0.00 2.57
4906 5525 0.394192 TCCTCCATGCGGCTAATGAG 59.606 55.000 0.00 2.24 0.00 2.90
4907 5526 0.394192 CCTCCATGCGGCTAATGAGA 59.606 55.000 0.00 0.00 0.00 3.27
4908 5527 1.506493 CTCCATGCGGCTAATGAGAC 58.494 55.000 0.00 0.00 0.00 3.36
4910 5529 0.107456 CCATGCGGCTAATGAGACCT 59.893 55.000 0.00 0.00 0.00 3.85
4911 5530 1.475751 CCATGCGGCTAATGAGACCTT 60.476 52.381 0.00 0.00 0.00 3.50
4912 5531 1.600957 CATGCGGCTAATGAGACCTTG 59.399 52.381 0.00 0.00 0.00 3.61
4913 5532 0.107703 TGCGGCTAATGAGACCTTGG 60.108 55.000 0.00 0.00 0.00 3.61
4914 5533 1.440145 GCGGCTAATGAGACCTTGGC 61.440 60.000 0.00 0.00 0.00 4.52
4915 5534 0.107703 CGGCTAATGAGACCTTGGCA 60.108 55.000 0.00 0.00 32.31 4.92
4916 5535 1.475751 CGGCTAATGAGACCTTGGCAT 60.476 52.381 0.00 0.00 32.31 4.40
4917 5536 1.952296 GGCTAATGAGACCTTGGCATG 59.048 52.381 0.00 0.00 32.31 4.06
4918 5537 2.421952 GGCTAATGAGACCTTGGCATGA 60.422 50.000 0.00 0.00 32.31 3.07
4919 5538 3.484407 GCTAATGAGACCTTGGCATGAT 58.516 45.455 0.00 0.00 31.17 2.45
4920 5539 3.501445 GCTAATGAGACCTTGGCATGATC 59.499 47.826 0.00 0.00 31.17 2.92
4921 5540 2.251409 ATGAGACCTTGGCATGATCG 57.749 50.000 0.00 0.00 0.00 3.69
4922 5541 0.462581 TGAGACCTTGGCATGATCGC 60.463 55.000 0.00 0.00 0.00 4.58
4930 5549 2.419198 GCATGATCGCCTCCTCGT 59.581 61.111 0.00 0.00 0.00 4.18
4931 5550 1.953138 GCATGATCGCCTCCTCGTG 60.953 63.158 0.00 0.00 0.00 4.35
4932 5551 1.300465 CATGATCGCCTCCTCGTGG 60.300 63.158 0.00 0.00 0.00 4.94
4933 5552 1.455773 ATGATCGCCTCCTCGTGGA 60.456 57.895 6.00 6.00 40.69 4.02
4934 5553 0.829602 ATGATCGCCTCCTCGTGGAT 60.830 55.000 6.68 0.00 42.29 3.41
4935 5554 1.006805 GATCGCCTCCTCGTGGATG 60.007 63.158 6.68 5.53 42.29 3.51
4936 5555 3.157217 ATCGCCTCCTCGTGGATGC 62.157 63.158 19.93 19.93 46.27 3.91
4938 5557 2.202987 GCCTCCTCGTGGATGCTG 60.203 66.667 21.82 5.25 46.25 4.41
4939 5558 2.503061 CCTCCTCGTGGATGCTGG 59.497 66.667 6.68 0.77 42.29 4.85
4940 5559 2.362369 CCTCCTCGTGGATGCTGGT 61.362 63.158 6.68 0.00 42.29 4.00
4941 5560 1.153489 CTCCTCGTGGATGCTGGTG 60.153 63.158 6.68 0.00 42.29 4.17
4942 5561 2.821366 CCTCGTGGATGCTGGTGC 60.821 66.667 0.00 0.00 35.98 5.01
4943 5562 2.267006 CTCGTGGATGCTGGTGCT 59.733 61.111 0.00 0.00 40.48 4.40
4944 5563 2.046988 TCGTGGATGCTGGTGCTG 60.047 61.111 0.00 0.00 40.48 4.41
4945 5564 3.807538 CGTGGATGCTGGTGCTGC 61.808 66.667 0.00 0.00 40.48 5.25
4946 5565 3.446570 GTGGATGCTGGTGCTGCC 61.447 66.667 0.00 0.00 40.48 4.85
4947 5566 3.654143 TGGATGCTGGTGCTGCCT 61.654 61.111 0.00 0.00 40.48 4.75
4948 5567 2.362120 GGATGCTGGTGCTGCCTT 60.362 61.111 0.00 0.00 40.48 4.35
4949 5568 1.980772 GGATGCTGGTGCTGCCTTT 60.981 57.895 0.00 0.00 40.48 3.11
4950 5569 1.509923 GATGCTGGTGCTGCCTTTC 59.490 57.895 0.00 0.00 40.48 2.62
4951 5570 2.262471 GATGCTGGTGCTGCCTTTCG 62.262 60.000 0.00 0.00 40.48 3.46
4952 5571 3.741476 GCTGGTGCTGCCTTTCGG 61.741 66.667 0.00 0.00 38.35 4.30
4953 5572 2.281761 CTGGTGCTGCCTTTCGGT 60.282 61.111 0.00 0.00 38.35 4.69
4954 5573 2.594303 TGGTGCTGCCTTTCGGTG 60.594 61.111 0.00 0.00 38.35 4.94
4955 5574 4.043200 GGTGCTGCCTTTCGGTGC 62.043 66.667 0.00 0.00 34.20 5.01
4956 5575 4.389576 GTGCTGCCTTTCGGTGCG 62.390 66.667 0.00 0.00 35.61 5.34
4962 5581 2.978010 CCTTTCGGTGCGCCACTT 60.978 61.111 18.18 0.00 34.40 3.16
4963 5582 2.556287 CTTTCGGTGCGCCACTTC 59.444 61.111 18.18 0.00 34.40 3.01
4964 5583 2.966309 CTTTCGGTGCGCCACTTCC 61.966 63.158 18.18 0.00 34.40 3.46
4973 5592 3.365265 GCCACTTCCGCCTGGTTG 61.365 66.667 0.00 0.00 36.30 3.77
4974 5593 2.672996 CCACTTCCGCCTGGTTGG 60.673 66.667 0.00 0.00 36.30 3.77
4975 5594 2.113139 CACTTCCGCCTGGTTGGT 59.887 61.111 6.95 0.00 38.35 3.67
4976 5595 2.113139 ACTTCCGCCTGGTTGGTG 59.887 61.111 6.95 0.00 45.60 4.17
4977 5596 2.113139 CTTCCGCCTGGTTGGTGT 59.887 61.111 6.95 0.00 44.58 4.16
4978 5597 2.203280 TTCCGCCTGGTTGGTGTG 60.203 61.111 6.95 0.00 44.58 3.82
4979 5598 2.958578 CTTCCGCCTGGTTGGTGTGT 62.959 60.000 6.95 0.00 44.58 3.72
4980 5599 3.286751 CCGCCTGGTTGGTGTGTG 61.287 66.667 0.00 0.00 44.58 3.82
4981 5600 3.964875 CGCCTGGTTGGTGTGTGC 61.965 66.667 0.00 0.00 41.27 4.57
4982 5601 3.964875 GCCTGGTTGGTGTGTGCG 61.965 66.667 0.00 0.00 38.35 5.34
4983 5602 3.286751 CCTGGTTGGTGTGTGCGG 61.287 66.667 0.00 0.00 0.00 5.69
4984 5603 3.286751 CTGGTTGGTGTGTGCGGG 61.287 66.667 0.00 0.00 0.00 6.13
4985 5604 3.765894 CTGGTTGGTGTGTGCGGGA 62.766 63.158 0.00 0.00 0.00 5.14
4986 5605 2.282180 GGTTGGTGTGTGCGGGAT 60.282 61.111 0.00 0.00 0.00 3.85
4987 5606 1.003112 GGTTGGTGTGTGCGGGATA 60.003 57.895 0.00 0.00 0.00 2.59
4988 5607 1.024579 GGTTGGTGTGTGCGGGATAG 61.025 60.000 0.00 0.00 0.00 2.08
4989 5608 1.024579 GTTGGTGTGTGCGGGATAGG 61.025 60.000 0.00 0.00 0.00 2.57
4990 5609 2.513897 GGTGTGTGCGGGATAGGC 60.514 66.667 0.00 0.00 0.00 3.93
4991 5610 2.267642 GTGTGTGCGGGATAGGCA 59.732 61.111 0.00 0.00 38.25 4.75
4992 5611 1.815421 GTGTGTGCGGGATAGGCAG 60.815 63.158 0.00 0.00 41.83 4.85
4993 5612 1.987306 TGTGTGCGGGATAGGCAGA 60.987 57.895 0.00 0.00 41.83 4.26
4994 5613 1.521681 GTGTGCGGGATAGGCAGAC 60.522 63.158 0.00 0.00 45.46 3.51
4995 5614 1.685765 TGTGCGGGATAGGCAGACT 60.686 57.895 0.00 0.00 41.83 3.24
4996 5615 1.227380 GTGCGGGATAGGCAGACTG 60.227 63.158 0.00 0.00 41.83 3.51
4997 5616 2.280457 GCGGGATAGGCAGACTGC 60.280 66.667 19.55 19.55 44.08 4.40
5014 5633 4.697756 CCCGCCGCTGAAACCTCA 62.698 66.667 0.00 0.00 0.00 3.86
5015 5634 2.436646 CCGCCGCTGAAACCTCAT 60.437 61.111 0.00 0.00 0.00 2.90
5019 5638 1.092345 GCCGCTGAAACCTCATCCTC 61.092 60.000 0.00 0.00 0.00 3.71
5054 5673 3.684788 ACTGTTTAGACATCCAATCGTGC 59.315 43.478 0.00 0.00 34.72 5.34
5102 5721 3.492313 CTGTAAATTCTGCAAAGCCGTC 58.508 45.455 0.00 0.00 0.00 4.79
5195 5852 5.999600 TGCATGAAATTCTTCACAAGAGAGA 59.000 36.000 0.00 0.00 44.28 3.10
5196 5853 6.148976 TGCATGAAATTCTTCACAAGAGAGAG 59.851 38.462 0.00 0.00 44.28 3.20
5197 5854 6.370994 GCATGAAATTCTTCACAAGAGAGAGA 59.629 38.462 0.00 0.00 44.28 3.10
5198 5855 7.413219 GCATGAAATTCTTCACAAGAGAGAGAG 60.413 40.741 0.00 0.00 44.28 3.20
5214 5871 1.679977 GAGCAAGGGCAAGATGGCA 60.680 57.895 6.25 0.00 45.76 4.92
5229 5886 2.514824 GCATGACCCGGGCTCTTC 60.515 66.667 24.08 11.70 0.00 2.87
5283 5940 4.443266 AAGCGCTGCGAGTCCTCC 62.443 66.667 28.07 5.79 0.00 4.30
5289 5946 2.363018 TGCGAGTCCTCCCCTCAG 60.363 66.667 0.00 0.00 0.00 3.35
5290 5947 2.043852 GCGAGTCCTCCCCTCAGA 60.044 66.667 0.00 0.00 0.00 3.27
5291 5948 2.124693 GCGAGTCCTCCCCTCAGAG 61.125 68.421 0.00 0.00 0.00 3.35
5292 5949 2.124693 CGAGTCCTCCCCTCAGAGC 61.125 68.421 0.00 0.00 32.17 4.09
5293 5950 1.000993 GAGTCCTCCCCTCAGAGCA 59.999 63.158 0.00 0.00 32.17 4.26
5294 5951 0.398381 GAGTCCTCCCCTCAGAGCAT 60.398 60.000 0.00 0.00 32.17 3.79
5295 5952 0.398381 AGTCCTCCCCTCAGAGCATC 60.398 60.000 0.00 0.00 32.17 3.91
5306 5963 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
5309 5966 2.514592 CATCTCCAACGGCCGCAT 60.515 61.111 28.58 12.52 0.00 4.73
5310 5967 1.227527 CATCTCCAACGGCCGCATA 60.228 57.895 28.58 7.56 0.00 3.14
5311 5968 0.813610 CATCTCCAACGGCCGCATAA 60.814 55.000 28.58 7.99 0.00 1.90
5312 5969 0.107410 ATCTCCAACGGCCGCATAAA 60.107 50.000 28.58 7.17 0.00 1.40
5313 5970 0.321741 TCTCCAACGGCCGCATAAAA 60.322 50.000 28.58 4.07 0.00 1.52
5314 5971 0.523966 CTCCAACGGCCGCATAAAAA 59.476 50.000 28.58 3.30 0.00 1.94
5315 5972 1.134175 CTCCAACGGCCGCATAAAAAT 59.866 47.619 28.58 0.00 0.00 1.82
5316 5973 1.133407 TCCAACGGCCGCATAAAAATC 59.867 47.619 28.58 0.00 0.00 2.17
5317 5974 1.134175 CCAACGGCCGCATAAAAATCT 59.866 47.619 28.58 0.00 0.00 2.40
5318 5975 2.450160 CAACGGCCGCATAAAAATCTC 58.550 47.619 28.58 0.00 0.00 2.75
5319 5976 0.655733 ACGGCCGCATAAAAATCTCG 59.344 50.000 28.58 0.00 0.00 4.04
5320 5977 0.657368 CGGCCGCATAAAAATCTCGC 60.657 55.000 14.67 0.00 0.00 5.03
5321 5978 0.657368 GGCCGCATAAAAATCTCGCG 60.657 55.000 0.00 0.00 45.25 5.87
5322 5979 1.262166 GCCGCATAAAAATCTCGCGC 61.262 55.000 0.00 0.00 44.36 6.86
5323 5980 0.657368 CCGCATAAAAATCTCGCGCC 60.657 55.000 0.00 0.00 44.36 6.53
5324 5981 0.657368 CGCATAAAAATCTCGCGCCC 60.657 55.000 0.00 0.00 39.43 6.13
5325 5982 0.380378 GCATAAAAATCTCGCGCCCA 59.620 50.000 0.00 0.00 0.00 5.36
5326 5983 1.202245 GCATAAAAATCTCGCGCCCAA 60.202 47.619 0.00 0.00 0.00 4.12
5327 5984 2.543653 GCATAAAAATCTCGCGCCCAAT 60.544 45.455 0.00 0.00 0.00 3.16
5328 5985 3.304391 GCATAAAAATCTCGCGCCCAATA 60.304 43.478 0.00 0.00 0.00 1.90
5329 5986 4.791411 GCATAAAAATCTCGCGCCCAATAA 60.791 41.667 0.00 0.00 0.00 1.40
5330 5987 3.859411 AAAAATCTCGCGCCCAATAAA 57.141 38.095 0.00 0.00 0.00 1.40
5331 5988 3.859411 AAAATCTCGCGCCCAATAAAA 57.141 38.095 0.00 0.00 0.00 1.52
5332 5989 4.385358 AAAATCTCGCGCCCAATAAAAT 57.615 36.364 0.00 0.00 0.00 1.82
5333 5990 4.385358 AAATCTCGCGCCCAATAAAATT 57.615 36.364 0.00 0.00 0.00 1.82
5334 5991 4.385358 AATCTCGCGCCCAATAAAATTT 57.615 36.364 0.00 0.00 0.00 1.82
5335 5992 5.508200 AATCTCGCGCCCAATAAAATTTA 57.492 34.783 0.00 0.00 0.00 1.40
5336 5993 5.705609 ATCTCGCGCCCAATAAAATTTAT 57.294 34.783 0.00 0.00 0.00 1.40
5337 5994 6.811253 ATCTCGCGCCCAATAAAATTTATA 57.189 33.333 0.00 0.00 0.00 0.98
5338 5995 6.236017 TCTCGCGCCCAATAAAATTTATAG 57.764 37.500 0.00 0.00 0.00 1.31
5339 5996 4.789784 TCGCGCCCAATAAAATTTATAGC 58.210 39.130 0.00 2.68 0.00 2.97
5340 5997 3.602062 CGCGCCCAATAAAATTTATAGCG 59.398 43.478 22.25 22.25 43.58 4.26
5341 5998 4.542735 GCGCCCAATAAAATTTATAGCGT 58.457 39.130 24.72 2.16 42.75 5.07
5342 5999 4.381566 GCGCCCAATAAAATTTATAGCGTG 59.618 41.667 24.72 11.42 42.75 5.34
5343 6000 5.753744 CGCCCAATAAAATTTATAGCGTGA 58.246 37.500 20.09 0.00 36.53 4.35
5344 6001 5.623673 CGCCCAATAAAATTTATAGCGTGAC 59.376 40.000 20.09 4.84 36.53 3.67
5345 6002 6.500041 GCCCAATAAAATTTATAGCGTGACA 58.500 36.000 0.00 0.00 0.00 3.58
5346 6003 6.416750 GCCCAATAAAATTTATAGCGTGACAC 59.583 38.462 0.00 0.00 0.00 3.67
5347 6004 7.681065 GCCCAATAAAATTTATAGCGTGACACT 60.681 37.037 3.68 0.00 0.00 3.55
5348 6005 7.643764 CCCAATAAAATTTATAGCGTGACACTG 59.356 37.037 3.68 0.00 0.00 3.66
5349 6006 8.181573 CCAATAAAATTTATAGCGTGACACTGT 58.818 33.333 3.68 0.00 0.00 3.55
5352 6009 5.968387 AATTTATAGCGTGACACTGTAGC 57.032 39.130 3.68 0.00 0.00 3.58
5353 6010 4.443913 TTTATAGCGTGACACTGTAGCA 57.556 40.909 3.68 0.00 0.00 3.49
5354 6011 4.649088 TTATAGCGTGACACTGTAGCAT 57.351 40.909 3.68 0.13 0.00 3.79
5355 6012 3.526931 ATAGCGTGACACTGTAGCATT 57.473 42.857 3.68 0.00 0.00 3.56
5356 6013 2.169832 AGCGTGACACTGTAGCATTT 57.830 45.000 3.68 0.00 0.00 2.32
5357 6014 2.494059 AGCGTGACACTGTAGCATTTT 58.506 42.857 3.68 0.00 0.00 1.82
5358 6015 3.659786 AGCGTGACACTGTAGCATTTTA 58.340 40.909 3.68 0.00 0.00 1.52
5359 6016 3.679980 AGCGTGACACTGTAGCATTTTAG 59.320 43.478 3.68 0.00 0.00 1.85
5360 6017 3.432252 GCGTGACACTGTAGCATTTTAGT 59.568 43.478 3.68 0.00 0.00 2.24
5361 6018 4.666655 GCGTGACACTGTAGCATTTTAGTG 60.667 45.833 3.68 0.00 44.52 2.74
5362 6019 4.666655 CGTGACACTGTAGCATTTTAGTGC 60.667 45.833 3.68 0.00 43.18 4.40
5369 6026 2.462503 GCATTTTAGTGCGTCGGGA 58.537 52.632 0.00 0.00 35.10 5.14
5370 6027 0.096454 GCATTTTAGTGCGTCGGGAC 59.904 55.000 0.00 0.00 35.10 4.46
5371 6028 0.725117 CATTTTAGTGCGTCGGGACC 59.275 55.000 0.00 0.00 34.61 4.46
5372 6029 0.322322 ATTTTAGTGCGTCGGGACCA 59.678 50.000 0.00 0.00 34.61 4.02
5373 6030 0.106335 TTTTAGTGCGTCGGGACCAA 59.894 50.000 0.00 0.00 34.61 3.67
5374 6031 0.322322 TTTAGTGCGTCGGGACCAAT 59.678 50.000 0.00 0.00 34.61 3.16
5375 6032 1.184431 TTAGTGCGTCGGGACCAATA 58.816 50.000 0.00 0.00 34.61 1.90
5376 6033 1.405872 TAGTGCGTCGGGACCAATAT 58.594 50.000 0.00 0.00 34.61 1.28
5377 6034 0.539986 AGTGCGTCGGGACCAATATT 59.460 50.000 0.00 0.00 34.61 1.28
5378 6035 0.655733 GTGCGTCGGGACCAATATTG 59.344 55.000 8.58 8.58 0.00 1.90
5379 6036 1.092921 TGCGTCGGGACCAATATTGC 61.093 55.000 10.11 0.00 0.00 3.56
5380 6037 0.814010 GCGTCGGGACCAATATTGCT 60.814 55.000 10.11 0.00 0.00 3.91
5381 6038 1.663695 CGTCGGGACCAATATTGCTT 58.336 50.000 10.11 0.00 0.00 3.91
5382 6039 2.014128 CGTCGGGACCAATATTGCTTT 58.986 47.619 10.11 0.00 0.00 3.51
5383 6040 3.199677 CGTCGGGACCAATATTGCTTTA 58.800 45.455 10.11 0.00 0.00 1.85
5384 6041 3.247648 CGTCGGGACCAATATTGCTTTAG 59.752 47.826 10.11 0.00 0.00 1.85
5385 6042 3.003378 GTCGGGACCAATATTGCTTTAGC 59.997 47.826 10.11 0.00 42.50 3.09
5398 6055 2.618053 GCTTTAGCAGACGCCTAAAGA 58.382 47.619 21.77 0.00 39.09 2.52
5399 6056 2.348971 GCTTTAGCAGACGCCTAAAGAC 59.651 50.000 21.77 13.82 39.09 3.01
5400 6057 2.273370 TTAGCAGACGCCTAAAGACG 57.727 50.000 0.00 0.00 39.83 4.18
5401 6058 0.179145 TAGCAGACGCCTAAAGACGC 60.179 55.000 0.00 0.00 39.83 5.19
5402 6059 1.736645 GCAGACGCCTAAAGACGCA 60.737 57.895 0.00 0.00 0.00 5.24
5403 6060 1.956620 GCAGACGCCTAAAGACGCAC 61.957 60.000 0.00 0.00 0.00 5.34
5404 6061 1.443872 AGACGCCTAAAGACGCACG 60.444 57.895 0.00 0.00 0.00 5.34
5405 6062 3.067846 GACGCCTAAAGACGCACGC 62.068 63.158 0.00 0.00 0.00 5.34
5406 6063 3.849953 CGCCTAAAGACGCACGCC 61.850 66.667 0.00 0.00 0.00 5.68
5407 6064 2.434359 GCCTAAAGACGCACGCCT 60.434 61.111 0.00 0.00 0.00 5.52
5408 6065 1.153706 GCCTAAAGACGCACGCCTA 60.154 57.895 0.00 0.00 0.00 3.93
5409 6066 0.738412 GCCTAAAGACGCACGCCTAA 60.738 55.000 0.00 0.00 0.00 2.69
5410 6067 1.717194 CCTAAAGACGCACGCCTAAA 58.283 50.000 0.00 0.00 0.00 1.85
5411 6068 2.070783 CCTAAAGACGCACGCCTAAAA 58.929 47.619 0.00 0.00 0.00 1.52
5412 6069 2.481185 CCTAAAGACGCACGCCTAAAAA 59.519 45.455 0.00 0.00 0.00 1.94
5413 6070 2.681152 AAAGACGCACGCCTAAAAAG 57.319 45.000 0.00 0.00 0.00 2.27
5414 6071 0.237498 AAGACGCACGCCTAAAAAGC 59.763 50.000 0.00 0.00 0.00 3.51
5415 6072 0.882927 AGACGCACGCCTAAAAAGCA 60.883 50.000 0.00 0.00 0.00 3.91
5416 6073 0.452784 GACGCACGCCTAAAAAGCAG 60.453 55.000 0.00 0.00 0.00 4.24
5417 6074 0.882927 ACGCACGCCTAAAAAGCAGA 60.883 50.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.192522 GGTATCATCTGATATCCACCCCATT 59.807 44.000 0.00 0.00 39.03 3.16
1 2 4.723789 GGTATCATCTGATATCCACCCCAT 59.276 45.833 0.00 0.00 39.03 4.00
2 3 4.104086 GGTATCATCTGATATCCACCCCA 58.896 47.826 0.00 0.00 39.03 4.96
3 4 4.080863 GTGGTATCATCTGATATCCACCCC 60.081 50.000 23.87 13.42 43.60 4.95
4 5 5.091261 GTGGTATCATCTGATATCCACCC 57.909 47.826 23.87 13.88 43.60 4.61
7 8 9.201989 GTAATAGGTGGTATCATCTGATATCCA 57.798 37.037 0.00 10.87 37.34 3.41
8 9 9.201989 TGTAATAGGTGGTATCATCTGATATCC 57.798 37.037 0.00 8.95 37.34 2.59
11 12 8.478066 GCATGTAATAGGTGGTATCATCTGATA 58.522 37.037 0.00 0.00 34.74 2.15
12 13 7.181665 AGCATGTAATAGGTGGTATCATCTGAT 59.818 37.037 0.00 0.00 34.74 2.90
13 14 6.498303 AGCATGTAATAGGTGGTATCATCTGA 59.502 38.462 0.00 0.00 34.74 3.27
14 15 6.705302 AGCATGTAATAGGTGGTATCATCTG 58.295 40.000 0.00 0.00 34.74 2.90
15 16 6.070538 GGAGCATGTAATAGGTGGTATCATCT 60.071 42.308 0.00 0.00 38.11 2.90
16 17 6.109359 GGAGCATGTAATAGGTGGTATCATC 58.891 44.000 0.00 0.00 0.00 2.92
17 18 5.045578 GGGAGCATGTAATAGGTGGTATCAT 60.046 44.000 0.00 0.00 0.00 2.45
18 19 4.286032 GGGAGCATGTAATAGGTGGTATCA 59.714 45.833 0.00 0.00 0.00 2.15
19 20 4.286032 TGGGAGCATGTAATAGGTGGTATC 59.714 45.833 0.00 0.00 0.00 2.24
20 21 4.239495 TGGGAGCATGTAATAGGTGGTAT 58.761 43.478 0.00 0.00 0.00 2.73
21 22 3.659841 TGGGAGCATGTAATAGGTGGTA 58.340 45.455 0.00 0.00 0.00 3.25
22 23 2.487775 TGGGAGCATGTAATAGGTGGT 58.512 47.619 0.00 0.00 0.00 4.16
23 24 3.415212 CATGGGAGCATGTAATAGGTGG 58.585 50.000 0.00 0.00 0.00 4.61
24 25 2.816087 GCATGGGAGCATGTAATAGGTG 59.184 50.000 0.00 0.00 35.16 4.00
25 26 2.713167 AGCATGGGAGCATGTAATAGGT 59.287 45.455 0.00 0.00 36.85 3.08
26 27 3.430042 AGCATGGGAGCATGTAATAGG 57.570 47.619 0.00 0.00 36.85 2.57
27 28 4.898320 TGTAGCATGGGAGCATGTAATAG 58.102 43.478 0.00 0.00 36.85 1.73
28 29 4.972751 TGTAGCATGGGAGCATGTAATA 57.027 40.909 0.00 0.00 36.85 0.98
29 30 3.862877 TGTAGCATGGGAGCATGTAAT 57.137 42.857 0.00 0.00 36.85 1.89
30 31 3.054434 ACTTGTAGCATGGGAGCATGTAA 60.054 43.478 0.00 0.00 36.85 2.41
96 97 8.437360 GACATATGTCTTGTGAACATCCATAA 57.563 34.615 25.52 0.00 41.65 1.90
98 99 6.932356 GACATATGTCTTGTGAACATCCAT 57.068 37.500 25.52 0.00 41.65 3.41
213 214 7.080724 GGCAAAAGAAAACAAAACATGAACAA 58.919 30.769 0.00 0.00 0.00 2.83
215 216 6.522855 GTGGCAAAAGAAAACAAAACATGAAC 59.477 34.615 0.00 0.00 0.00 3.18
226 227 7.945033 TGAATGAATAGTGGCAAAAGAAAAC 57.055 32.000 0.00 0.00 0.00 2.43
237 238 9.918630 AAAAGACAAATCTTGAATGAATAGTGG 57.081 29.630 0.00 0.00 44.82 4.00
375 388 9.739276 CACCCTTTATATGTTACATGATACCAT 57.261 33.333 8.26 0.00 0.00 3.55
376 389 8.160765 CCACCCTTTATATGTTACATGATACCA 58.839 37.037 8.26 0.00 0.00 3.25
377 390 8.161425 ACCACCCTTTATATGTTACATGATACC 58.839 37.037 8.26 0.00 0.00 2.73
380 393 9.959721 GATACCACCCTTTATATGTTACATGAT 57.040 33.333 8.26 1.04 0.00 2.45
381 394 9.166222 AGATACCACCCTTTATATGTTACATGA 57.834 33.333 8.26 0.00 0.00 3.07
382 395 9.793259 AAGATACCACCCTTTATATGTTACATG 57.207 33.333 8.26 0.00 0.00 3.21
385 398 9.433153 GCTAAGATACCACCCTTTATATGTTAC 57.567 37.037 0.00 0.00 0.00 2.50
386 399 9.388672 AGCTAAGATACCACCCTTTATATGTTA 57.611 33.333 0.00 0.00 0.00 2.41
387 400 8.276453 AGCTAAGATACCACCCTTTATATGTT 57.724 34.615 0.00 0.00 0.00 2.71
388 401 7.873699 AGCTAAGATACCACCCTTTATATGT 57.126 36.000 0.00 0.00 0.00 2.29
389 402 7.982354 GCTAGCTAAGATACCACCCTTTATATG 59.018 40.741 7.70 0.00 0.00 1.78
390 403 7.147880 CGCTAGCTAAGATACCACCCTTTATAT 60.148 40.741 13.93 0.00 0.00 0.86
391 404 6.152323 CGCTAGCTAAGATACCACCCTTTATA 59.848 42.308 13.93 0.00 0.00 0.98
392 405 5.047235 CGCTAGCTAAGATACCACCCTTTAT 60.047 44.000 13.93 0.00 0.00 1.40
393 406 4.280174 CGCTAGCTAAGATACCACCCTTTA 59.720 45.833 13.93 0.00 0.00 1.85
394 407 3.069729 CGCTAGCTAAGATACCACCCTTT 59.930 47.826 13.93 0.00 0.00 3.11
395 408 2.628657 CGCTAGCTAAGATACCACCCTT 59.371 50.000 13.93 0.00 0.00 3.95
396 409 2.240279 CGCTAGCTAAGATACCACCCT 58.760 52.381 13.93 0.00 0.00 4.34
397 410 1.336980 GCGCTAGCTAAGATACCACCC 60.337 57.143 13.93 0.00 41.01 4.61
398 411 1.666311 CGCGCTAGCTAAGATACCACC 60.666 57.143 13.93 0.00 42.32 4.61
399 412 1.666311 CCGCGCTAGCTAAGATACCAC 60.666 57.143 13.93 0.00 42.32 4.16
400 413 0.596577 CCGCGCTAGCTAAGATACCA 59.403 55.000 13.93 0.00 42.32 3.25
401 414 0.597072 ACCGCGCTAGCTAAGATACC 59.403 55.000 13.93 0.00 42.32 2.73
402 415 2.418983 AACCGCGCTAGCTAAGATAC 57.581 50.000 13.93 0.00 42.32 2.24
403 416 3.144506 AGTAACCGCGCTAGCTAAGATA 58.855 45.455 13.93 0.00 42.32 1.98
404 417 1.955080 AGTAACCGCGCTAGCTAAGAT 59.045 47.619 13.93 0.00 42.32 2.40
405 418 1.386533 AGTAACCGCGCTAGCTAAGA 58.613 50.000 13.93 0.00 42.32 2.10
406 419 1.852895 CAAGTAACCGCGCTAGCTAAG 59.147 52.381 13.93 3.13 42.32 2.18
407 420 1.203052 ACAAGTAACCGCGCTAGCTAA 59.797 47.619 13.93 0.00 42.32 3.09
408 421 0.813184 ACAAGTAACCGCGCTAGCTA 59.187 50.000 13.93 0.00 42.32 3.32
409 422 0.813184 TACAAGTAACCGCGCTAGCT 59.187 50.000 13.93 0.00 42.32 3.32
410 423 1.197910 CTACAAGTAACCGCGCTAGC 58.802 55.000 5.56 4.06 40.74 3.42
411 424 1.535437 CCCTACAAGTAACCGCGCTAG 60.535 57.143 5.56 0.00 0.00 3.42
412 425 0.457035 CCCTACAAGTAACCGCGCTA 59.543 55.000 5.56 0.00 0.00 4.26
413 426 1.217244 CCCTACAAGTAACCGCGCT 59.783 57.895 5.56 0.00 0.00 5.92
423 436 4.429108 CACACAAAACAAACCCCTACAAG 58.571 43.478 0.00 0.00 0.00 3.16
442 455 5.279406 CCAAATAAGTCAAATTGAGGGCACA 60.279 40.000 0.00 0.00 0.00 4.57
443 456 5.170748 CCAAATAAGTCAAATTGAGGGCAC 58.829 41.667 0.00 0.00 0.00 5.01
444 457 4.837860 ACCAAATAAGTCAAATTGAGGGCA 59.162 37.500 0.00 0.00 0.00 5.36
445 458 5.405935 ACCAAATAAGTCAAATTGAGGGC 57.594 39.130 0.00 0.00 0.00 5.19
446 459 5.105351 GGGACCAAATAAGTCAAATTGAGGG 60.105 44.000 0.00 0.00 35.89 4.30
449 462 8.748412 CAATAGGGACCAAATAAGTCAAATTGA 58.252 33.333 0.00 0.00 34.47 2.57
451 464 7.180051 TGCAATAGGGACCAAATAAGTCAAATT 59.820 33.333 0.00 0.00 35.89 1.82
453 466 6.013379 TGCAATAGGGACCAAATAAGTCAAA 58.987 36.000 0.00 0.00 35.89 2.69
456 470 5.193679 AGTGCAATAGGGACCAAATAAGTC 58.806 41.667 0.00 0.00 38.89 3.01
461 475 3.525199 AGAGAGTGCAATAGGGACCAAAT 59.475 43.478 0.00 0.00 38.89 2.32
469 483 5.182760 AGAAAAGCAAAGAGAGTGCAATAGG 59.817 40.000 0.00 0.00 44.74 2.57
492 506 7.716612 AGATTTAAGGTTCACAGGTTCAAAAG 58.283 34.615 0.00 0.00 0.00 2.27
502 516 5.654650 ACCACAACAAGATTTAAGGTTCACA 59.345 36.000 0.00 0.00 0.00 3.58
512 526 3.132925 GCATGCAACCACAACAAGATTT 58.867 40.909 14.21 0.00 0.00 2.17
515 529 1.401761 AGCATGCAACCACAACAAGA 58.598 45.000 21.98 0.00 0.00 3.02
529 543 2.600470 AAACAACCACACCAAGCATG 57.400 45.000 0.00 0.00 0.00 4.06
540 554 8.679100 CGGATGGAGTATTAAATAAAACAACCA 58.321 33.333 0.00 0.00 0.00 3.67
562 576 4.081862 TCCGACAAGTATTTCTGAACGGAT 60.082 41.667 9.53 0.00 38.56 4.18
570 584 9.838339 ATATTCATTTCTCCGACAAGTATTTCT 57.162 29.630 0.00 0.00 0.00 2.52
639 653 8.557864 TCCGTTCGAAAATACTTGTCAAATAAA 58.442 29.630 0.00 0.00 0.00 1.40
640 654 8.085720 TCCGTTCGAAAATACTTGTCAAATAA 57.914 30.769 0.00 0.00 0.00 1.40
641 655 7.599621 TCTCCGTTCGAAAATACTTGTCAAATA 59.400 33.333 0.00 0.00 0.00 1.40
642 656 6.425721 TCTCCGTTCGAAAATACTTGTCAAAT 59.574 34.615 0.00 0.00 0.00 2.32
643 657 5.754406 TCTCCGTTCGAAAATACTTGTCAAA 59.246 36.000 0.00 0.00 0.00 2.69
644 658 5.291178 TCTCCGTTCGAAAATACTTGTCAA 58.709 37.500 0.00 0.00 0.00 3.18
645 659 4.873817 TCTCCGTTCGAAAATACTTGTCA 58.126 39.130 0.00 0.00 0.00 3.58
650 664 6.696441 ATACTCTCTCCGTTCGAAAATACT 57.304 37.500 0.00 0.00 0.00 2.12
651 665 8.847444 TTAATACTCTCTCCGTTCGAAAATAC 57.153 34.615 0.00 0.00 0.00 1.89
658 672 9.512435 TTTTTCTATTAATACTCTCTCCGTTCG 57.488 33.333 0.00 0.00 0.00 3.95
660 674 9.298774 CGTTTTTCTATTAATACTCTCTCCGTT 57.701 33.333 0.00 0.00 0.00 4.44
667 681 7.441903 TCCCCCGTTTTTCTATTAATACTCT 57.558 36.000 0.00 0.00 0.00 3.24
674 688 6.130692 AGAGTTTCCCCCGTTTTTCTATTA 57.869 37.500 0.00 0.00 0.00 0.98
677 691 3.244665 GGAGAGTTTCCCCCGTTTTTCTA 60.245 47.826 0.00 0.00 40.37 2.10
678 692 2.488528 GGAGAGTTTCCCCCGTTTTTCT 60.489 50.000 0.00 0.00 40.37 2.52
679 693 1.884579 GGAGAGTTTCCCCCGTTTTTC 59.115 52.381 0.00 0.00 40.37 2.29
680 694 1.215924 TGGAGAGTTTCCCCCGTTTTT 59.784 47.619 0.00 0.00 46.19 1.94
681 695 0.848053 TGGAGAGTTTCCCCCGTTTT 59.152 50.000 0.00 0.00 46.19 2.43
682 696 0.848053 TTGGAGAGTTTCCCCCGTTT 59.152 50.000 0.00 0.00 46.19 3.60
683 697 0.109913 GTTGGAGAGTTTCCCCCGTT 59.890 55.000 0.00 0.00 46.19 4.44
684 698 1.759236 GTTGGAGAGTTTCCCCCGT 59.241 57.895 0.00 0.00 46.19 5.28
685 699 1.375523 CGTTGGAGAGTTTCCCCCG 60.376 63.158 0.00 0.00 46.19 5.73
686 700 0.321387 GACGTTGGAGAGTTTCCCCC 60.321 60.000 0.00 0.00 46.19 5.40
687 701 0.669625 CGACGTTGGAGAGTTTCCCC 60.670 60.000 0.00 0.00 46.19 4.81
690 704 0.507358 GCACGACGTTGGAGAGTTTC 59.493 55.000 7.90 0.00 0.00 2.78
725 739 3.877508 GGTATGGTTCTGTATCAGTTGCC 59.122 47.826 0.00 0.00 32.61 4.52
726 740 3.555956 CGGTATGGTTCTGTATCAGTTGC 59.444 47.826 0.00 0.00 32.61 4.17
727 741 4.119862 CCGGTATGGTTCTGTATCAGTTG 58.880 47.826 0.00 0.00 32.61 3.16
728 742 3.431766 GCCGGTATGGTTCTGTATCAGTT 60.432 47.826 1.90 0.00 41.21 3.16
1302 1713 2.291043 GGAGGCGGTGAGGAGGAAA 61.291 63.158 0.00 0.00 0.00 3.13
1353 1764 3.352338 GACGACGCGGTGGAGGAAT 62.352 63.158 12.47 0.00 0.00 3.01
1431 1863 1.070175 GCGTACAAAGCACGTGAACAT 60.070 47.619 22.23 2.18 41.41 2.71
1438 1870 1.959226 ACAGGGCGTACAAAGCACG 60.959 57.895 0.00 0.00 43.98 5.34
1448 1880 2.138179 ACCTACACACACAGGGCGT 61.138 57.895 0.00 0.00 36.15 5.68
1573 2010 2.029124 GCAAACTTGAAAACAACTGGCG 59.971 45.455 0.00 0.00 0.00 5.69
1639 2076 7.559486 TCTCATCAAGCAACTCATACTACATT 58.441 34.615 0.00 0.00 0.00 2.71
1845 2282 4.760204 CCTTTCCGACCACATAAAAAGAGT 59.240 41.667 0.00 0.00 0.00 3.24
2429 2887 4.203226 TGTTGCAAATCAGTACACAGGAA 58.797 39.130 0.00 0.00 0.00 3.36
2544 3002 2.890945 GCCTCCACCATAACTTGTTTGT 59.109 45.455 0.00 0.00 0.00 2.83
2545 3003 2.890311 TGCCTCCACCATAACTTGTTTG 59.110 45.455 0.00 0.00 0.00 2.93
2560 3018 0.035630 ACTCACAGCTCAATGCCTCC 60.036 55.000 0.00 0.00 44.23 4.30
2674 3163 8.107729 AGTTTAGGTAAAGTAGGGGATTTCAAG 58.892 37.037 0.00 0.00 0.00 3.02
2675 3164 7.992295 AGTTTAGGTAAAGTAGGGGATTTCAA 58.008 34.615 0.00 0.00 0.00 2.69
2676 3165 7.578458 AGTTTAGGTAAAGTAGGGGATTTCA 57.422 36.000 0.00 0.00 0.00 2.69
2892 3381 1.696884 TCAACCTGACATGTACCAGCA 59.303 47.619 0.00 0.00 0.00 4.41
2990 3479 6.100404 TGATTTGTGCTGCCTTAAATTTCT 57.900 33.333 0.00 0.00 0.00 2.52
4059 4666 4.691860 AGCAAGTTCATGACATTAGCAC 57.308 40.909 0.00 0.00 0.00 4.40
4067 4674 3.072944 AGAGAGCAAGCAAGTTCATGAC 58.927 45.455 0.00 0.00 0.00 3.06
4219 4826 4.080969 ACTCGTAACAAAGCTAGTCTCG 57.919 45.455 0.00 0.00 0.00 4.04
4227 4834 9.422196 GATGATATAACAAACTCGTAACAAAGC 57.578 33.333 0.00 0.00 0.00 3.51
4278 4885 2.767505 ACTTTTTACTCGAGGTGCCAG 58.232 47.619 18.41 9.30 0.00 4.85
4304 4912 4.223320 AGCGAACCTGTAAAACACATTG 57.777 40.909 0.00 0.00 36.29 2.82
4305 4913 5.938125 AGATAGCGAACCTGTAAAACACATT 59.062 36.000 0.00 0.00 36.29 2.71
4310 4918 7.823149 TCTTTAGATAGCGAACCTGTAAAAC 57.177 36.000 0.00 0.00 0.00 2.43
4311 4919 8.255206 TGATCTTTAGATAGCGAACCTGTAAAA 58.745 33.333 0.00 0.00 34.37 1.52
4314 4922 6.954487 TGATCTTTAGATAGCGAACCTGTA 57.046 37.500 0.00 0.00 34.37 2.74
4795 5413 7.768807 AGACTATAGAAATGCCTCGAATAGT 57.231 36.000 6.78 1.32 34.65 2.12
4813 5431 5.888901 TCCGTCCACCATTCTATAGACTAT 58.111 41.667 0.67 0.00 0.00 2.12
4905 5524 4.547859 GCGATCATGCCAAGGTCT 57.452 55.556 0.00 0.00 0.00 3.85
4913 5532 1.953138 CACGAGGAGGCGATCATGC 60.953 63.158 0.00 0.00 34.83 4.06
4914 5533 1.300465 CCACGAGGAGGCGATCATG 60.300 63.158 0.00 0.00 36.89 3.07
4915 5534 1.455773 TCCACGAGGAGGCGATCAT 60.456 57.895 0.00 0.00 39.61 2.45
4916 5535 2.044352 TCCACGAGGAGGCGATCA 60.044 61.111 0.00 0.00 39.61 2.92
4925 5544 2.821366 GCACCAGCATCCACGAGG 60.821 66.667 0.00 0.00 41.58 4.63
4926 5545 2.104859 CAGCACCAGCATCCACGAG 61.105 63.158 0.00 0.00 45.49 4.18
4927 5546 2.046988 CAGCACCAGCATCCACGA 60.047 61.111 0.00 0.00 45.49 4.35
4928 5547 3.807538 GCAGCACCAGCATCCACG 61.808 66.667 0.00 0.00 45.49 4.94
4929 5548 3.446570 GGCAGCACCAGCATCCAC 61.447 66.667 0.00 0.00 45.49 4.02
4930 5549 2.718487 AAAGGCAGCACCAGCATCCA 62.718 55.000 0.00 0.00 45.49 3.41
4931 5550 1.941999 GAAAGGCAGCACCAGCATCC 61.942 60.000 0.00 0.00 45.49 3.51
4932 5551 1.509923 GAAAGGCAGCACCAGCATC 59.490 57.895 0.00 0.00 45.49 3.91
4933 5552 2.338015 CGAAAGGCAGCACCAGCAT 61.338 57.895 0.00 0.00 45.49 3.79
4934 5553 2.979676 CGAAAGGCAGCACCAGCA 60.980 61.111 0.00 0.00 45.49 4.41
4946 5565 2.556287 GAAGTGGCGCACCGAAAG 59.444 61.111 10.83 0.00 39.70 2.62
4947 5566 2.975799 GGAAGTGGCGCACCGAAA 60.976 61.111 10.83 0.00 39.70 3.46
4956 5575 3.365265 CAACCAGGCGGAAGTGGC 61.365 66.667 2.43 0.00 37.34 5.01
4957 5576 2.672996 CCAACCAGGCGGAAGTGG 60.673 66.667 2.43 0.00 39.98 4.00
4958 5577 2.113139 ACCAACCAGGCGGAAGTG 59.887 61.111 2.31 0.00 43.14 3.16
4959 5578 2.113139 CACCAACCAGGCGGAAGT 59.887 61.111 2.31 0.00 43.14 3.01
4960 5579 2.113139 ACACCAACCAGGCGGAAG 59.887 61.111 2.31 0.00 43.14 3.46
4961 5580 2.203280 CACACCAACCAGGCGGAA 60.203 61.111 2.31 0.00 43.14 4.30
4962 5581 3.484806 ACACACCAACCAGGCGGA 61.485 61.111 2.31 0.00 43.14 5.54
4963 5582 3.286751 CACACACCAACCAGGCGG 61.287 66.667 0.00 0.00 43.14 6.13
4964 5583 3.964875 GCACACACCAACCAGGCG 61.965 66.667 0.00 0.00 43.14 5.52
4965 5584 3.964875 CGCACACACCAACCAGGC 61.965 66.667 0.00 0.00 43.14 4.85
4966 5585 3.286751 CCGCACACACCAACCAGG 61.287 66.667 0.00 0.00 45.67 4.45
4967 5586 3.286751 CCCGCACACACCAACCAG 61.287 66.667 0.00 0.00 0.00 4.00
4968 5587 1.769716 TATCCCGCACACACCAACCA 61.770 55.000 0.00 0.00 0.00 3.67
4969 5588 1.003112 TATCCCGCACACACCAACC 60.003 57.895 0.00 0.00 0.00 3.77
4970 5589 1.024579 CCTATCCCGCACACACCAAC 61.025 60.000 0.00 0.00 0.00 3.77
4971 5590 1.298340 CCTATCCCGCACACACCAA 59.702 57.895 0.00 0.00 0.00 3.67
4972 5591 2.986290 CCTATCCCGCACACACCA 59.014 61.111 0.00 0.00 0.00 4.17
4973 5592 2.513897 GCCTATCCCGCACACACC 60.514 66.667 0.00 0.00 0.00 4.16
4974 5593 1.815421 CTGCCTATCCCGCACACAC 60.815 63.158 0.00 0.00 31.61 3.82
4975 5594 1.987306 TCTGCCTATCCCGCACACA 60.987 57.895 0.00 0.00 31.61 3.72
4976 5595 1.521681 GTCTGCCTATCCCGCACAC 60.522 63.158 0.00 0.00 31.61 3.82
4977 5596 1.685765 AGTCTGCCTATCCCGCACA 60.686 57.895 0.00 0.00 31.61 4.57
4978 5597 1.227380 CAGTCTGCCTATCCCGCAC 60.227 63.158 0.00 0.00 31.61 5.34
4979 5598 3.094062 GCAGTCTGCCTATCCCGCA 62.094 63.158 14.27 0.00 37.42 5.69
4980 5599 2.280457 GCAGTCTGCCTATCCCGC 60.280 66.667 14.27 0.00 37.42 6.13
4997 5616 3.976701 ATGAGGTTTCAGCGGCGGG 62.977 63.158 9.78 0.00 36.61 6.13
4998 5617 2.436646 ATGAGGTTTCAGCGGCGG 60.437 61.111 9.78 0.00 36.61 6.13
4999 5618 2.464459 GGATGAGGTTTCAGCGGCG 61.464 63.158 0.51 0.51 40.62 6.46
5000 5619 1.078143 AGGATGAGGTTTCAGCGGC 60.078 57.895 0.00 0.00 40.62 6.53
5001 5620 0.250234 TGAGGATGAGGTTTCAGCGG 59.750 55.000 0.00 0.00 40.62 5.52
5002 5621 1.066573 AGTGAGGATGAGGTTTCAGCG 60.067 52.381 0.00 0.00 40.62 5.18
5003 5622 2.746362 CAAGTGAGGATGAGGTTTCAGC 59.254 50.000 0.00 0.00 39.00 4.26
5004 5623 2.746362 GCAAGTGAGGATGAGGTTTCAG 59.254 50.000 0.00 0.00 36.61 3.02
5005 5624 2.106338 TGCAAGTGAGGATGAGGTTTCA 59.894 45.455 0.00 0.00 37.81 2.69
5006 5625 2.783135 TGCAAGTGAGGATGAGGTTTC 58.217 47.619 0.00 0.00 0.00 2.78
5007 5626 2.957402 TGCAAGTGAGGATGAGGTTT 57.043 45.000 0.00 0.00 0.00 3.27
5008 5627 2.040813 ACATGCAAGTGAGGATGAGGTT 59.959 45.455 0.00 0.00 39.40 3.50
5009 5628 1.632409 ACATGCAAGTGAGGATGAGGT 59.368 47.619 0.00 0.00 39.40 3.85
5010 5629 2.414994 ACATGCAAGTGAGGATGAGG 57.585 50.000 0.00 0.00 39.40 3.86
5011 5630 4.940046 AGTTAACATGCAAGTGAGGATGAG 59.060 41.667 8.61 0.00 39.40 2.90
5012 5631 4.696877 CAGTTAACATGCAAGTGAGGATGA 59.303 41.667 8.61 0.00 39.40 2.92
5013 5632 4.456911 ACAGTTAACATGCAAGTGAGGATG 59.543 41.667 17.85 0.00 42.30 3.51
5014 5633 4.655963 ACAGTTAACATGCAAGTGAGGAT 58.344 39.130 17.85 0.00 31.94 3.24
5015 5634 4.085357 ACAGTTAACATGCAAGTGAGGA 57.915 40.909 17.85 0.00 31.94 3.71
5019 5638 6.724263 TGTCTAAACAGTTAACATGCAAGTG 58.276 36.000 8.61 11.92 33.42 3.16
5054 5673 1.502190 CAGCACAGCACAGCATCTG 59.498 57.895 0.00 0.00 37.52 2.90
5102 5721 2.418746 CCCGCATATTTATCTCCCGGAG 60.419 54.545 8.30 8.30 36.55 4.63
5165 5822 2.095110 TGAAGAATTTCATGCACCTGCG 60.095 45.455 0.00 0.00 40.11 5.18
5195 5852 1.379576 GCCATCTTGCCCTTGCTCT 60.380 57.895 0.00 0.00 38.71 4.09
5196 5853 1.041447 ATGCCATCTTGCCCTTGCTC 61.041 55.000 0.00 0.00 38.71 4.26
5197 5854 1.001248 ATGCCATCTTGCCCTTGCT 59.999 52.632 0.00 0.00 38.71 3.91
5198 5855 1.143183 CATGCCATCTTGCCCTTGC 59.857 57.895 0.00 0.00 38.26 4.01
5214 5871 2.683933 ACGAAGAGCCCGGGTCAT 60.684 61.111 24.63 11.44 31.89 3.06
5229 5886 2.125912 CACGCCAGGGAGAAGACG 60.126 66.667 0.00 0.00 0.00 4.18
5283 5940 0.179089 CGTTGGAGATGCTCTGAGGG 60.179 60.000 6.83 0.00 0.00 4.30
5289 5946 2.892425 CGGCCGTTGGAGATGCTC 60.892 66.667 19.50 0.00 0.00 4.26
5292 5949 0.813610 TTATGCGGCCGTTGGAGATG 60.814 55.000 28.70 0.00 0.00 2.90
5293 5950 0.107410 TTTATGCGGCCGTTGGAGAT 60.107 50.000 28.70 11.50 0.00 2.75
5294 5951 0.321741 TTTTATGCGGCCGTTGGAGA 60.322 50.000 28.70 6.64 0.00 3.71
5295 5952 0.523966 TTTTTATGCGGCCGTTGGAG 59.476 50.000 28.70 0.00 0.00 3.86
5296 5953 1.133407 GATTTTTATGCGGCCGTTGGA 59.867 47.619 28.70 8.98 0.00 3.53
5297 5954 1.134175 AGATTTTTATGCGGCCGTTGG 59.866 47.619 28.70 0.00 0.00 3.77
5298 5955 2.450160 GAGATTTTTATGCGGCCGTTG 58.550 47.619 28.70 0.00 0.00 4.10
5299 5956 1.063469 CGAGATTTTTATGCGGCCGTT 59.937 47.619 28.70 17.38 0.00 4.44
5300 5957 0.655733 CGAGATTTTTATGCGGCCGT 59.344 50.000 28.70 10.76 0.00 5.68
5301 5958 0.657368 GCGAGATTTTTATGCGGCCG 60.657 55.000 24.05 24.05 0.00 6.13
5302 5959 0.657368 CGCGAGATTTTTATGCGGCC 60.657 55.000 0.00 0.00 44.65 6.13
5303 5960 2.770818 CGCGAGATTTTTATGCGGC 58.229 52.632 0.00 0.00 44.65 6.53
5306 5963 0.380378 TGGGCGCGAGATTTTTATGC 59.620 50.000 12.10 0.00 0.00 3.14
5307 5964 2.842208 TTGGGCGCGAGATTTTTATG 57.158 45.000 12.10 0.00 0.00 1.90
5308 5965 5.508200 TTTATTGGGCGCGAGATTTTTAT 57.492 34.783 12.10 0.00 0.00 1.40
5309 5966 4.966965 TTTATTGGGCGCGAGATTTTTA 57.033 36.364 12.10 0.00 0.00 1.52
5310 5967 3.859411 TTTATTGGGCGCGAGATTTTT 57.141 38.095 12.10 0.00 0.00 1.94
5311 5968 3.859411 TTTTATTGGGCGCGAGATTTT 57.141 38.095 12.10 0.00 0.00 1.82
5312 5969 4.385358 AATTTTATTGGGCGCGAGATTT 57.615 36.364 12.10 0.00 0.00 2.17
5313 5970 4.385358 AAATTTTATTGGGCGCGAGATT 57.615 36.364 12.10 0.00 0.00 2.40
5314 5971 5.705609 ATAAATTTTATTGGGCGCGAGAT 57.294 34.783 12.10 0.00 0.00 2.75
5315 5972 5.334569 GCTATAAATTTTATTGGGCGCGAGA 60.335 40.000 12.10 0.00 0.00 4.04
5316 5973 4.851558 GCTATAAATTTTATTGGGCGCGAG 59.148 41.667 12.10 0.00 0.00 5.03
5317 5974 4.611807 CGCTATAAATTTTATTGGGCGCGA 60.612 41.667 12.10 0.00 38.13 5.87
5318 5975 3.602062 CGCTATAAATTTTATTGGGCGCG 59.398 43.478 19.91 0.00 34.19 6.86
5319 5976 4.381566 CACGCTATAAATTTTATTGGGCGC 59.618 41.667 25.44 0.00 43.08 6.53
5320 5977 5.623673 GTCACGCTATAAATTTTATTGGGCG 59.376 40.000 24.71 24.71 44.49 6.13
5321 5978 6.416750 GTGTCACGCTATAAATTTTATTGGGC 59.583 38.462 19.78 14.45 0.00 5.36
5322 5979 7.643764 CAGTGTCACGCTATAAATTTTATTGGG 59.356 37.037 18.87 18.87 0.00 4.12
5323 5980 8.181573 ACAGTGTCACGCTATAAATTTTATTGG 58.818 33.333 6.95 3.12 0.00 3.16
5326 5983 8.548721 GCTACAGTGTCACGCTATAAATTTTAT 58.451 33.333 0.00 6.85 0.00 1.40
5327 5984 7.546316 TGCTACAGTGTCACGCTATAAATTTTA 59.454 33.333 0.00 0.00 0.00 1.52
5328 5985 6.370442 TGCTACAGTGTCACGCTATAAATTTT 59.630 34.615 0.00 0.00 0.00 1.82
5329 5986 5.872617 TGCTACAGTGTCACGCTATAAATTT 59.127 36.000 0.00 0.00 0.00 1.82
5330 5987 5.416083 TGCTACAGTGTCACGCTATAAATT 58.584 37.500 0.00 0.00 0.00 1.82
5331 5988 5.006153 TGCTACAGTGTCACGCTATAAAT 57.994 39.130 0.00 0.00 0.00 1.40
5332 5989 4.443913 TGCTACAGTGTCACGCTATAAA 57.556 40.909 0.00 0.00 0.00 1.40
5333 5990 4.649088 ATGCTACAGTGTCACGCTATAA 57.351 40.909 0.00 0.00 0.00 0.98
5334 5991 4.649088 AATGCTACAGTGTCACGCTATA 57.351 40.909 0.00 0.00 0.00 1.31
5335 5992 3.526931 AATGCTACAGTGTCACGCTAT 57.473 42.857 0.00 0.00 0.00 2.97
5336 5993 3.313012 AAATGCTACAGTGTCACGCTA 57.687 42.857 0.00 0.00 0.00 4.26
5337 5994 2.169832 AAATGCTACAGTGTCACGCT 57.830 45.000 0.00 0.00 0.00 5.07
5338 5995 2.969443 AAAATGCTACAGTGTCACGC 57.031 45.000 0.00 1.84 0.00 5.34
5339 5996 4.666655 GCACTAAAATGCTACAGTGTCACG 60.667 45.833 0.00 0.00 42.62 4.35
5340 5997 4.666655 CGCACTAAAATGCTACAGTGTCAC 60.667 45.833 0.00 0.00 43.80 3.67
5341 5998 3.431912 CGCACTAAAATGCTACAGTGTCA 59.568 43.478 0.00 0.00 43.80 3.58
5342 5999 3.432252 ACGCACTAAAATGCTACAGTGTC 59.568 43.478 0.00 0.00 43.80 3.67
5343 6000 3.399330 ACGCACTAAAATGCTACAGTGT 58.601 40.909 0.00 0.00 43.80 3.55
5344 6001 3.481951 CGACGCACTAAAATGCTACAGTG 60.482 47.826 0.00 0.00 43.80 3.66
5345 6002 2.666508 CGACGCACTAAAATGCTACAGT 59.333 45.455 0.00 0.00 43.80 3.55
5346 6003 2.029244 CCGACGCACTAAAATGCTACAG 59.971 50.000 0.00 0.00 43.80 2.74
5347 6004 1.996898 CCGACGCACTAAAATGCTACA 59.003 47.619 0.00 0.00 43.80 2.74
5348 6005 1.326548 CCCGACGCACTAAAATGCTAC 59.673 52.381 0.00 0.00 43.80 3.58
5349 6006 1.205179 TCCCGACGCACTAAAATGCTA 59.795 47.619 0.00 0.00 43.80 3.49
5350 6007 0.036765 TCCCGACGCACTAAAATGCT 60.037 50.000 0.00 0.00 43.80 3.79
5351 6008 0.096454 GTCCCGACGCACTAAAATGC 59.904 55.000 0.00 0.00 42.48 3.56
5352 6009 0.725117 GGTCCCGACGCACTAAAATG 59.275 55.000 0.00 0.00 0.00 2.32
5353 6010 0.322322 TGGTCCCGACGCACTAAAAT 59.678 50.000 0.00 0.00 0.00 1.82
5354 6011 0.106335 TTGGTCCCGACGCACTAAAA 59.894 50.000 0.00 0.00 0.00 1.52
5355 6012 0.322322 ATTGGTCCCGACGCACTAAA 59.678 50.000 0.00 0.00 0.00 1.85
5356 6013 1.184431 TATTGGTCCCGACGCACTAA 58.816 50.000 0.00 0.00 0.00 2.24
5357 6014 1.405872 ATATTGGTCCCGACGCACTA 58.594 50.000 0.00 0.00 0.00 2.74
5358 6015 0.539986 AATATTGGTCCCGACGCACT 59.460 50.000 0.00 0.00 0.00 4.40
5359 6016 0.655733 CAATATTGGTCCCGACGCAC 59.344 55.000 7.62 0.00 0.00 5.34
5360 6017 1.092921 GCAATATTGGTCCCGACGCA 61.093 55.000 17.02 0.00 0.00 5.24
5361 6018 0.814010 AGCAATATTGGTCCCGACGC 60.814 55.000 14.31 0.00 32.71 5.19
5362 6019 1.663695 AAGCAATATTGGTCCCGACG 58.336 50.000 19.80 0.00 38.04 5.12
5363 6020 3.003378 GCTAAAGCAATATTGGTCCCGAC 59.997 47.826 19.80 6.31 41.59 4.79
5364 6021 3.211045 GCTAAAGCAATATTGGTCCCGA 58.789 45.455 19.80 5.76 41.59 5.14
5365 6022 3.626028 GCTAAAGCAATATTGGTCCCG 57.374 47.619 19.80 11.80 41.59 5.14
5378 6035 2.348971 GTCTTTAGGCGTCTGCTAAAGC 59.651 50.000 0.00 0.00 39.27 3.51
5379 6036 2.599082 CGTCTTTAGGCGTCTGCTAAAG 59.401 50.000 0.00 1.56 39.94 1.85
5380 6037 2.602878 CGTCTTTAGGCGTCTGCTAAA 58.397 47.619 0.00 0.00 42.25 1.85
5381 6038 1.734707 GCGTCTTTAGGCGTCTGCTAA 60.735 52.381 0.00 0.00 42.25 3.09
5382 6039 0.179145 GCGTCTTTAGGCGTCTGCTA 60.179 55.000 0.00 0.00 42.25 3.49
5383 6040 1.446272 GCGTCTTTAGGCGTCTGCT 60.446 57.895 0.00 0.00 42.25 4.24
5384 6041 1.736645 TGCGTCTTTAGGCGTCTGC 60.737 57.895 0.00 0.00 39.39 4.26
5385 6042 1.674611 CGTGCGTCTTTAGGCGTCTG 61.675 60.000 0.00 0.00 39.39 3.51
5386 6043 1.443872 CGTGCGTCTTTAGGCGTCT 60.444 57.895 5.59 0.00 39.39 4.18
5387 6044 3.067846 GCGTGCGTCTTTAGGCGTC 62.068 63.158 5.59 0.00 39.39 5.19
5388 6045 3.110178 GCGTGCGTCTTTAGGCGT 61.110 61.111 5.59 0.00 39.39 5.68
5389 6046 2.877360 TAGGCGTGCGTCTTTAGGCG 62.877 60.000 3.49 0.00 39.39 5.52
5390 6047 0.738412 TTAGGCGTGCGTCTTTAGGC 60.738 55.000 3.49 0.00 37.02 3.93
5391 6048 1.717194 TTTAGGCGTGCGTCTTTAGG 58.283 50.000 3.49 0.00 0.00 2.69
5392 6049 3.732943 CTTTTTAGGCGTGCGTCTTTAG 58.267 45.455 3.49 0.00 0.00 1.85
5393 6050 2.096119 GCTTTTTAGGCGTGCGTCTTTA 60.096 45.455 3.49 0.00 0.00 1.85
5394 6051 1.334689 GCTTTTTAGGCGTGCGTCTTT 60.335 47.619 3.49 0.00 0.00 2.52
5395 6052 0.237498 GCTTTTTAGGCGTGCGTCTT 59.763 50.000 3.49 0.00 0.00 3.01
5396 6053 0.882927 TGCTTTTTAGGCGTGCGTCT 60.883 50.000 3.70 3.70 0.00 4.18
5397 6054 0.452784 CTGCTTTTTAGGCGTGCGTC 60.453 55.000 0.00 0.00 0.00 5.19
5398 6055 0.882927 TCTGCTTTTTAGGCGTGCGT 60.883 50.000 0.00 0.00 0.00 5.24
5399 6056 1.866237 TCTGCTTTTTAGGCGTGCG 59.134 52.632 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.