Multiple sequence alignment - TraesCS3A01G254100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G254100 chr3A 100.000 2696 0 0 1 2696 475715449 475718144 0.000000e+00 4979.0
1 TraesCS3A01G254100 chr3A 86.897 725 38 23 1 676 80519891 80520607 0.000000e+00 760.0
2 TraesCS3A01G254100 chr3A 86.235 494 31 16 210 672 7122144 7122631 4.010000e-138 501.0
3 TraesCS3A01G254100 chr3D 93.183 1379 53 15 673 2023 356821958 356823323 0.000000e+00 1988.0
4 TraesCS3A01G254100 chr3D 81.755 718 63 24 1 672 515970122 515969427 3.050000e-149 538.0
5 TraesCS3A01G254100 chr3D 86.083 503 33 18 210 680 28325114 28325611 8.610000e-140 507.0
6 TraesCS3A01G254100 chr3D 92.258 310 23 1 2272 2580 591359509 591359818 3.190000e-119 438.0
7 TraesCS3A01G254100 chr3B 92.810 1377 48 15 677 2050 457965182 457966510 0.000000e+00 1947.0
8 TraesCS3A01G254100 chr3B 94.017 117 3 1 2580 2696 457966614 457966726 9.920000e-40 174.0
9 TraesCS3A01G254100 chr3B 94.286 70 3 1 2129 2198 36537540 36537608 3.670000e-19 106.0
10 TraesCS3A01G254100 chr3B 98.039 51 1 0 2202 2252 457966533 457966583 3.700000e-14 89.8
11 TraesCS3A01G254100 chr5A 88.873 701 39 23 3 672 566168710 566169402 0.000000e+00 826.0
12 TraesCS3A01G254100 chr5A 87.304 701 53 22 1 672 109964940 109965633 0.000000e+00 769.0
13 TraesCS3A01G254100 chr5A 85.160 721 51 23 1 671 499661033 499661747 0.000000e+00 688.0
14 TraesCS3A01G254100 chr5A 78.979 333 39 9 80 387 672810905 672810579 5.890000e-47 198.0
15 TraesCS3A01G254100 chr5A 86.842 114 14 1 2088 2201 8122788 8122676 2.820000e-25 126.0
16 TraesCS3A01G254100 chr2D 88.746 702 44 16 1 672 450874582 450875278 0.000000e+00 826.0
17 TraesCS3A01G254100 chr2D 86.534 453 38 14 239 672 447159579 447160027 6.750000e-131 477.0
18 TraesCS3A01G254100 chr2D 83.168 101 17 0 2101 2201 13948658 13948758 2.860000e-15 93.5
19 TraesCS3A01G254100 chr5D 87.714 700 49 17 1 675 9591193 9590506 0.000000e+00 782.0
20 TraesCS3A01G254100 chr5D 85.498 662 59 19 1 646 17490440 17491080 0.000000e+00 656.0
21 TraesCS3A01G254100 chr5D 87.070 611 40 15 1 579 346882092 346881489 0.000000e+00 654.0
22 TraesCS3A01G254100 chr5D 85.965 114 15 1 2088 2201 10361416 10361304 1.310000e-23 121.0
23 TraesCS3A01G254100 chr7D 87.770 695 43 23 1 672 204444569 204443894 0.000000e+00 774.0
24 TraesCS3A01G254100 chr7D 87.376 705 49 17 1 672 71634270 71633573 0.000000e+00 773.0
25 TraesCS3A01G254100 chr7D 83.473 714 73 21 1 688 31599951 31600645 8.200000e-175 623.0
26 TraesCS3A01G254100 chr7D 81.806 720 60 32 9 672 578504918 578505622 3.050000e-149 538.0
27 TraesCS3A01G254100 chr7D 79.663 713 65 34 12 680 83383586 83382910 8.860000e-120 440.0
28 TraesCS3A01G254100 chr7D 90.879 307 25 3 2278 2583 45592956 45592652 2.500000e-110 409.0
29 TraesCS3A01G254100 chr7D 90.879 307 25 2 2278 2583 63727499 63727195 2.500000e-110 409.0
30 TraesCS3A01G254100 chr7D 91.118 304 24 2 2278 2580 452714230 452713929 2.500000e-110 409.0
31 TraesCS3A01G254100 chr1A 85.390 705 39 27 19 670 335011539 335010846 0.000000e+00 673.0
32 TraesCS3A01G254100 chr1A 83.607 732 57 21 1 681 494811727 494811008 1.760000e-176 628.0
33 TraesCS3A01G254100 chr1A 86.335 161 15 4 212 369 335011649 335011493 4.620000e-38 169.0
34 TraesCS3A01G254100 chr4D 84.488 722 51 26 1 679 441108891 441108188 0.000000e+00 656.0
35 TraesCS3A01G254100 chr4D 84.739 498 40 16 210 677 95365139 95364648 1.460000e-127 466.0
36 TraesCS3A01G254100 chr4D 90.354 311 27 2 2278 2587 36351745 36351437 3.230000e-109 405.0
37 TraesCS3A01G254100 chr4D 90.789 304 24 2 2278 2580 65916771 65916471 1.160000e-108 403.0
38 TraesCS3A01G254100 chr4D 78.846 728 55 30 1 684 486797329 486798001 1.500000e-107 399.0
39 TraesCS3A01G254100 chr2A 83.636 715 63 22 1 671 775039351 775038647 8.200000e-175 623.0
40 TraesCS3A01G254100 chr2A 100.000 29 0 0 2086 2114 762978440 762978468 1.000000e-03 54.7
41 TraesCS3A01G254100 chr1B 80.441 726 76 32 4 679 580529272 580528563 6.710000e-136 494.0
42 TraesCS3A01G254100 chr4A 80.258 699 88 28 1 673 21515932 21516606 5.220000e-132 481.0
43 TraesCS3A01G254100 chr4A 82.996 494 46 14 209 683 589113369 589113843 1.930000e-111 412.0
44 TraesCS3A01G254100 chr4A 80.172 116 20 3 2088 2201 634738673 634738787 1.720000e-12 84.2
45 TraesCS3A01G254100 chr6D 91.883 308 22 2 2278 2584 340113135 340112830 6.900000e-116 427.0
46 TraesCS3A01G254100 chr6D 78.607 603 64 31 103 672 407582699 407583269 3.320000e-89 339.0
47 TraesCS3A01G254100 chr7B 90.675 311 24 4 2272 2580 1384845 1385152 2.500000e-110 409.0
48 TraesCS3A01G254100 chr1D 90.645 310 24 3 2272 2580 356221500 356221805 8.990000e-110 407.0
49 TraesCS3A01G254100 chr1D 81.930 487 42 16 210 674 90139929 90139467 1.180000e-98 370.0
50 TraesCS3A01G254100 chr1D 91.892 74 5 1 2128 2201 470073618 470073546 4.750000e-18 102.0
51 TraesCS3A01G254100 chr1D 82.524 103 13 3 2087 2189 365056988 365057085 4.780000e-13 86.1
52 TraesCS3A01G254100 chr6B 88.596 114 13 0 2088 2201 205267226 205267339 3.620000e-29 139.0
53 TraesCS3A01G254100 chr7A 87.129 101 13 0 2093 2193 161296933 161297033 6.100000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G254100 chr3A 475715449 475718144 2695 False 4979.000000 4979 100.000000 1 2696 1 chr3A.!!$F3 2695
1 TraesCS3A01G254100 chr3A 80519891 80520607 716 False 760.000000 760 86.897000 1 676 1 chr3A.!!$F2 675
2 TraesCS3A01G254100 chr3D 356821958 356823323 1365 False 1988.000000 1988 93.183000 673 2023 1 chr3D.!!$F2 1350
3 TraesCS3A01G254100 chr3D 515969427 515970122 695 True 538.000000 538 81.755000 1 672 1 chr3D.!!$R1 671
4 TraesCS3A01G254100 chr3B 457965182 457966726 1544 False 736.933333 1947 94.955333 677 2696 3 chr3B.!!$F2 2019
5 TraesCS3A01G254100 chr5A 566168710 566169402 692 False 826.000000 826 88.873000 3 672 1 chr5A.!!$F3 669
6 TraesCS3A01G254100 chr5A 109964940 109965633 693 False 769.000000 769 87.304000 1 672 1 chr5A.!!$F1 671
7 TraesCS3A01G254100 chr5A 499661033 499661747 714 False 688.000000 688 85.160000 1 671 1 chr5A.!!$F2 670
8 TraesCS3A01G254100 chr2D 450874582 450875278 696 False 826.000000 826 88.746000 1 672 1 chr2D.!!$F3 671
9 TraesCS3A01G254100 chr5D 9590506 9591193 687 True 782.000000 782 87.714000 1 675 1 chr5D.!!$R1 674
10 TraesCS3A01G254100 chr5D 17490440 17491080 640 False 656.000000 656 85.498000 1 646 1 chr5D.!!$F1 645
11 TraesCS3A01G254100 chr5D 346881489 346882092 603 True 654.000000 654 87.070000 1 579 1 chr5D.!!$R3 578
12 TraesCS3A01G254100 chr7D 204443894 204444569 675 True 774.000000 774 87.770000 1 672 1 chr7D.!!$R5 671
13 TraesCS3A01G254100 chr7D 71633573 71634270 697 True 773.000000 773 87.376000 1 672 1 chr7D.!!$R3 671
14 TraesCS3A01G254100 chr7D 31599951 31600645 694 False 623.000000 623 83.473000 1 688 1 chr7D.!!$F1 687
15 TraesCS3A01G254100 chr7D 578504918 578505622 704 False 538.000000 538 81.806000 9 672 1 chr7D.!!$F2 663
16 TraesCS3A01G254100 chr7D 83382910 83383586 676 True 440.000000 440 79.663000 12 680 1 chr7D.!!$R4 668
17 TraesCS3A01G254100 chr1A 494811008 494811727 719 True 628.000000 628 83.607000 1 681 1 chr1A.!!$R1 680
18 TraesCS3A01G254100 chr1A 335010846 335011649 803 True 421.000000 673 85.862500 19 670 2 chr1A.!!$R2 651
19 TraesCS3A01G254100 chr4D 441108188 441108891 703 True 656.000000 656 84.488000 1 679 1 chr4D.!!$R4 678
20 TraesCS3A01G254100 chr4D 486797329 486798001 672 False 399.000000 399 78.846000 1 684 1 chr4D.!!$F1 683
21 TraesCS3A01G254100 chr2A 775038647 775039351 704 True 623.000000 623 83.636000 1 671 1 chr2A.!!$R1 670
22 TraesCS3A01G254100 chr1B 580528563 580529272 709 True 494.000000 494 80.441000 4 679 1 chr1B.!!$R1 675
23 TraesCS3A01G254100 chr4A 21515932 21516606 674 False 481.000000 481 80.258000 1 673 1 chr4A.!!$F1 672
24 TraesCS3A01G254100 chr6D 407582699 407583269 570 False 339.000000 339 78.607000 103 672 1 chr6D.!!$F1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 1362 0.679505 TTTACTCGCAGTGCAGTCCT 59.32 50.0 16.83 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2838 0.093026 CGAACTTTTAGTGCGCGGAG 59.907 55.0 8.83 0.0 40.83 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.260434 GCGAGAGGCACGGTTGTA 59.740 61.111 0.00 0.00 42.87 2.41
189 200 2.616510 CGTGCCTCTCAGAAAGGGAAAT 60.617 50.000 0.00 0.00 35.86 2.17
207 222 5.735892 GGGAAATAATACGCGTTTTCTGTTC 59.264 40.000 25.03 20.65 0.00 3.18
467 924 8.742554 AAAAATCGTCAAAACCTATCAACATC 57.257 30.769 0.00 0.00 0.00 3.06
477 935 5.713792 ACCTATCAACATCGGATCTAGTG 57.286 43.478 0.00 0.00 0.00 2.74
649 1141 2.290641 GTGGAGTGTTCTTTGCAACGAT 59.709 45.455 6.45 0.00 0.00 3.73
683 1175 8.452989 AATTAGTGATTTCGACATTTTCAAGC 57.547 30.769 0.00 0.00 0.00 4.01
759 1252 2.868662 CTATCACCTGACTGTCACACG 58.131 52.381 6.36 0.00 0.00 4.49
787 1280 9.360093 ACAGAAGAAACTCGAGTCAATATTAAG 57.640 33.333 20.33 9.82 0.00 1.85
789 1282 7.982354 AGAAGAAACTCGAGTCAATATTAAGGG 59.018 37.037 20.33 0.00 0.00 3.95
860 1355 1.654105 CGGCTAACTTTACTCGCAGTG 59.346 52.381 0.00 0.00 0.00 3.66
867 1362 0.679505 TTTACTCGCAGTGCAGTCCT 59.320 50.000 16.83 0.00 0.00 3.85
882 1377 1.203063 AGTCCTGTGCTCTCTACCACA 60.203 52.381 0.00 0.00 39.45 4.17
903 1398 4.753610 ACAACTAGTTAACCGCTTTCTTCC 59.246 41.667 8.04 0.00 0.00 3.46
943 1438 5.958380 TCTTCTTTTATAGCCTCTCCAGTCA 59.042 40.000 0.00 0.00 0.00 3.41
1064 1559 2.725008 GTCCTCGAGCTCCATCGG 59.275 66.667 6.99 3.56 42.93 4.18
1092 1587 3.648545 GTGCTATCCACCCTATCTTCCTT 59.351 47.826 0.00 0.00 38.55 3.36
1173 1668 5.508994 CGGCATATGTCAAGAGGTACATACA 60.509 44.000 8.28 0.00 40.40 2.29
1174 1669 6.467677 GGCATATGTCAAGAGGTACATACAT 58.532 40.000 1.45 0.00 40.40 2.29
1175 1670 7.576856 CGGCATATGTCAAGAGGTACATACATA 60.577 40.741 8.28 3.98 40.40 2.29
1176 1671 8.260818 GGCATATGTCAAGAGGTACATACATAT 58.739 37.037 1.45 7.51 40.40 1.78
1392 1887 4.923942 ATGGCGGAGATGCGGCTG 62.924 66.667 19.96 0.00 42.03 4.85
1501 1996 4.760047 CACTGGGGAAGTCGCGGG 62.760 72.222 6.13 0.00 36.83 6.13
1551 2046 0.613292 ACCTCATGTCGGAGCTGTCT 60.613 55.000 10.14 0.00 33.47 3.41
1706 2201 4.554036 GCCCTGAGCGGTGGATCC 62.554 72.222 4.20 4.20 0.00 3.36
1776 2276 3.930229 CACCATTCAGATTTTGGCATGTG 59.070 43.478 0.00 0.00 33.66 3.21
1777 2277 3.055675 ACCATTCAGATTTTGGCATGTGG 60.056 43.478 0.00 0.00 33.66 4.17
1778 2278 3.055675 CCATTCAGATTTTGGCATGTGGT 60.056 43.478 0.00 0.00 0.00 4.16
1796 2297 7.971722 GCATGTGGTAGTTTTATTATTTTCCGT 59.028 33.333 0.00 0.00 0.00 4.69
1859 2360 4.102524 AGGATGGGTATTGCGTTTCATAGA 59.897 41.667 0.00 0.00 0.00 1.98
1947 2469 4.286297 TGTTTGTCGGAATGGATCTTCT 57.714 40.909 0.00 0.00 0.00 2.85
1987 2509 4.335735 ACATGATCAAATTCCCCCTTGA 57.664 40.909 0.00 0.00 36.08 3.02
2040 2562 2.991190 CGGTTACGTACAGATTGCAAGT 59.009 45.455 4.94 0.00 34.81 3.16
2050 2572 6.918022 CGTACAGATTGCAAGTATACTCATGA 59.082 38.462 5.70 0.00 0.00 3.07
2051 2573 7.114106 CGTACAGATTGCAAGTATACTCATGAG 59.886 40.741 21.37 21.37 0.00 2.90
2052 2574 6.286758 ACAGATTGCAAGTATACTCATGAGG 58.713 40.000 26.08 7.99 0.00 3.86
2053 2575 5.178996 CAGATTGCAAGTATACTCATGAGGC 59.821 44.000 26.08 17.36 0.00 4.70
2054 2576 3.475566 TGCAAGTATACTCATGAGGCC 57.524 47.619 26.08 10.73 0.00 5.19
2055 2577 2.104792 TGCAAGTATACTCATGAGGCCC 59.895 50.000 26.08 11.06 0.00 5.80
2056 2578 2.104792 GCAAGTATACTCATGAGGCCCA 59.895 50.000 26.08 9.09 0.00 5.36
2057 2579 3.433598 GCAAGTATACTCATGAGGCCCAA 60.434 47.826 26.08 7.01 0.00 4.12
2058 2580 4.130118 CAAGTATACTCATGAGGCCCAAC 58.870 47.826 26.08 15.50 0.00 3.77
2059 2581 2.706190 AGTATACTCATGAGGCCCAACC 59.294 50.000 26.08 7.60 39.61 3.77
2060 2582 1.595311 ATACTCATGAGGCCCAACCA 58.405 50.000 26.08 1.97 43.14 3.67
2061 2583 1.367346 TACTCATGAGGCCCAACCAA 58.633 50.000 26.08 0.00 43.14 3.67
2062 2584 0.251341 ACTCATGAGGCCCAACCAAC 60.251 55.000 26.08 0.00 43.14 3.77
2063 2585 0.967380 CTCATGAGGCCCAACCAACC 60.967 60.000 15.38 0.00 43.14 3.77
2064 2586 1.228831 CATGAGGCCCAACCAACCA 60.229 57.895 0.00 0.00 43.14 3.67
2065 2587 1.228862 ATGAGGCCCAACCAACCAC 60.229 57.895 0.00 0.00 43.14 4.16
2066 2588 2.983592 GAGGCCCAACCAACCACG 60.984 66.667 0.00 0.00 43.14 4.94
2080 2602 2.489275 CCACGCAACACCAGCCTTT 61.489 57.895 0.00 0.00 0.00 3.11
2089 2611 0.040425 CACCAGCCTTTGCGTTGTAC 60.040 55.000 0.00 0.00 44.33 2.90
2090 2612 0.179029 ACCAGCCTTTGCGTTGTACT 60.179 50.000 0.00 0.00 44.33 2.73
2091 2613 0.517316 CCAGCCTTTGCGTTGTACTC 59.483 55.000 0.00 0.00 44.33 2.59
2092 2614 0.517316 CAGCCTTTGCGTTGTACTCC 59.483 55.000 0.00 0.00 44.33 3.85
2093 2615 0.605589 AGCCTTTGCGTTGTACTCCC 60.606 55.000 0.00 0.00 44.33 4.30
2094 2616 0.605589 GCCTTTGCGTTGTACTCCCT 60.606 55.000 0.00 0.00 0.00 4.20
2095 2617 1.439679 CCTTTGCGTTGTACTCCCTC 58.560 55.000 0.00 0.00 0.00 4.30
2096 2618 1.002087 CCTTTGCGTTGTACTCCCTCT 59.998 52.381 0.00 0.00 0.00 3.69
2097 2619 2.069273 CTTTGCGTTGTACTCCCTCTG 58.931 52.381 0.00 0.00 0.00 3.35
2098 2620 1.045407 TTGCGTTGTACTCCCTCTGT 58.955 50.000 0.00 0.00 0.00 3.41
2099 2621 0.601558 TGCGTTGTACTCCCTCTGTC 59.398 55.000 0.00 0.00 0.00 3.51
2100 2622 0.108756 GCGTTGTACTCCCTCTGTCC 60.109 60.000 0.00 0.00 0.00 4.02
2101 2623 0.531200 CGTTGTACTCCCTCTGTCCC 59.469 60.000 0.00 0.00 0.00 4.46
2102 2624 1.640917 GTTGTACTCCCTCTGTCCCA 58.359 55.000 0.00 0.00 0.00 4.37
2103 2625 1.975680 GTTGTACTCCCTCTGTCCCAA 59.024 52.381 0.00 0.00 0.00 4.12
2104 2626 2.370849 GTTGTACTCCCTCTGTCCCAAA 59.629 50.000 0.00 0.00 0.00 3.28
2105 2627 2.915869 TGTACTCCCTCTGTCCCAAAT 58.084 47.619 0.00 0.00 0.00 2.32
2106 2628 3.256704 TGTACTCCCTCTGTCCCAAATT 58.743 45.455 0.00 0.00 0.00 1.82
2107 2629 4.431378 TGTACTCCCTCTGTCCCAAATTA 58.569 43.478 0.00 0.00 0.00 1.40
2108 2630 4.224370 TGTACTCCCTCTGTCCCAAATTAC 59.776 45.833 0.00 0.00 0.00 1.89
2109 2631 3.532102 ACTCCCTCTGTCCCAAATTACT 58.468 45.455 0.00 0.00 0.00 2.24
2110 2632 3.916989 ACTCCCTCTGTCCCAAATTACTT 59.083 43.478 0.00 0.00 0.00 2.24
2111 2633 5.098663 ACTCCCTCTGTCCCAAATTACTTA 58.901 41.667 0.00 0.00 0.00 2.24
2112 2634 5.731678 ACTCCCTCTGTCCCAAATTACTTAT 59.268 40.000 0.00 0.00 0.00 1.73
2113 2635 6.126739 ACTCCCTCTGTCCCAAATTACTTATC 60.127 42.308 0.00 0.00 0.00 1.75
2114 2636 5.057149 CCCTCTGTCCCAAATTACTTATCG 58.943 45.833 0.00 0.00 0.00 2.92
2115 2637 4.511826 CCTCTGTCCCAAATTACTTATCGC 59.488 45.833 0.00 0.00 0.00 4.58
2116 2638 5.092554 TCTGTCCCAAATTACTTATCGCA 57.907 39.130 0.00 0.00 0.00 5.10
2117 2639 5.680619 TCTGTCCCAAATTACTTATCGCAT 58.319 37.500 0.00 0.00 0.00 4.73
2118 2640 6.822442 TCTGTCCCAAATTACTTATCGCATA 58.178 36.000 0.00 0.00 0.00 3.14
2119 2641 7.276658 TCTGTCCCAAATTACTTATCGCATAA 58.723 34.615 0.00 0.00 0.00 1.90
2120 2642 7.771361 TCTGTCCCAAATTACTTATCGCATAAA 59.229 33.333 0.00 0.00 0.00 1.40
2121 2643 8.458573 TGTCCCAAATTACTTATCGCATAAAT 57.541 30.769 0.00 0.00 0.00 1.40
2122 2644 9.562408 TGTCCCAAATTACTTATCGCATAAATA 57.438 29.630 0.00 0.00 0.00 1.40
2176 2698 9.698309 AAATATGTCTAGATACGTCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
2177 2699 4.933330 TGTCTAGATACGTCCATTTCTGC 58.067 43.478 0.00 0.00 0.00 4.26
2178 2700 3.975670 GTCTAGATACGTCCATTTCTGCG 59.024 47.826 0.00 0.00 0.00 5.18
2179 2701 3.881089 TCTAGATACGTCCATTTCTGCGA 59.119 43.478 0.00 0.00 0.00 5.10
2180 2702 2.810650 AGATACGTCCATTTCTGCGAC 58.189 47.619 0.00 0.00 0.00 5.19
2181 2703 2.165641 AGATACGTCCATTTCTGCGACA 59.834 45.455 0.00 0.00 0.00 4.35
2182 2704 2.442212 TACGTCCATTTCTGCGACAA 57.558 45.000 0.00 0.00 0.00 3.18
2183 2705 1.148310 ACGTCCATTTCTGCGACAAG 58.852 50.000 0.00 0.00 0.00 3.16
2184 2706 1.148310 CGTCCATTTCTGCGACAAGT 58.852 50.000 0.00 0.00 0.00 3.16
2185 2707 2.288579 ACGTCCATTTCTGCGACAAGTA 60.289 45.455 0.00 0.00 0.00 2.24
2186 2708 2.734606 CGTCCATTTCTGCGACAAGTAA 59.265 45.455 0.00 0.00 0.00 2.24
2187 2709 3.370978 CGTCCATTTCTGCGACAAGTAAT 59.629 43.478 0.00 0.00 0.00 1.89
2188 2710 4.142902 CGTCCATTTCTGCGACAAGTAATT 60.143 41.667 0.00 0.00 0.00 1.40
2189 2711 5.616866 CGTCCATTTCTGCGACAAGTAATTT 60.617 40.000 0.00 0.00 0.00 1.82
2190 2712 5.795441 GTCCATTTCTGCGACAAGTAATTTC 59.205 40.000 0.00 0.00 0.00 2.17
2191 2713 4.788100 CCATTTCTGCGACAAGTAATTTCG 59.212 41.667 0.00 4.05 35.82 3.46
2192 2714 4.398549 TTTCTGCGACAAGTAATTTCGG 57.601 40.909 8.68 0.00 33.28 4.30
2193 2715 3.306917 TCTGCGACAAGTAATTTCGGA 57.693 42.857 8.68 5.89 33.28 4.55
2194 2716 2.991190 TCTGCGACAAGTAATTTCGGAC 59.009 45.455 8.68 0.00 33.28 4.79
2195 2717 1.722464 TGCGACAAGTAATTTCGGACG 59.278 47.619 8.68 0.00 33.28 4.79
2196 2718 1.060122 GCGACAAGTAATTTCGGACGG 59.940 52.381 8.68 0.00 33.28 4.79
2197 2719 2.598589 CGACAAGTAATTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2198 2720 2.597305 CGACAAGTAATTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2199 2721 2.928116 GACAAGTAATTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2200 2722 2.277084 CAAGTAATTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2249 2787 1.678101 GAGAGGCAAACAACTTGTGCT 59.322 47.619 0.00 0.00 38.36 4.40
2250 2788 2.099756 GAGAGGCAAACAACTTGTGCTT 59.900 45.455 0.00 0.00 38.36 3.91
2265 2803 2.038426 TGTGCTTTCCAAATCTCCTCGA 59.962 45.455 0.00 0.00 0.00 4.04
2269 2807 3.941483 GCTTTCCAAATCTCCTCGATGAA 59.059 43.478 0.00 0.00 31.20 2.57
2270 2808 4.201861 GCTTTCCAAATCTCCTCGATGAAC 60.202 45.833 0.00 0.00 31.20 3.18
2271 2809 3.165058 TCCAAATCTCCTCGATGAACG 57.835 47.619 0.00 0.00 44.09 3.95
2280 2818 1.428219 TCGATGAACGAGCGACTCC 59.572 57.895 0.00 0.00 46.45 3.85
2281 2819 1.136774 CGATGAACGAGCGACTCCA 59.863 57.895 0.00 0.00 45.77 3.86
2282 2820 0.456142 CGATGAACGAGCGACTCCAA 60.456 55.000 0.00 0.00 45.77 3.53
2283 2821 0.992802 GATGAACGAGCGACTCCAAC 59.007 55.000 0.00 0.00 0.00 3.77
2284 2822 0.317160 ATGAACGAGCGACTCCAACA 59.683 50.000 0.00 0.00 0.00 3.33
2285 2823 0.318699 TGAACGAGCGACTCCAACAG 60.319 55.000 0.00 0.00 0.00 3.16
2286 2824 0.039437 GAACGAGCGACTCCAACAGA 60.039 55.000 0.00 0.00 0.00 3.41
2287 2825 0.318784 AACGAGCGACTCCAACAGAC 60.319 55.000 0.00 0.00 0.00 3.51
2288 2826 1.797933 CGAGCGACTCCAACAGACG 60.798 63.158 0.00 0.00 42.40 4.18
2291 2829 2.651361 CGACTCCAACAGACGCCT 59.349 61.111 0.00 0.00 33.56 5.52
2292 2830 1.880894 CGACTCCAACAGACGCCTA 59.119 57.895 0.00 0.00 33.56 3.93
2293 2831 0.242825 CGACTCCAACAGACGCCTAA 59.757 55.000 0.00 0.00 33.56 2.69
2294 2832 1.336517 CGACTCCAACAGACGCCTAAA 60.337 52.381 0.00 0.00 33.56 1.85
2295 2833 2.762745 GACTCCAACAGACGCCTAAAA 58.237 47.619 0.00 0.00 0.00 1.52
2296 2834 3.135994 GACTCCAACAGACGCCTAAAAA 58.864 45.455 0.00 0.00 0.00 1.94
2297 2835 3.139077 ACTCCAACAGACGCCTAAAAAG 58.861 45.455 0.00 0.00 0.00 2.27
2298 2836 3.181458 ACTCCAACAGACGCCTAAAAAGA 60.181 43.478 0.00 0.00 0.00 2.52
2299 2837 3.399330 TCCAACAGACGCCTAAAAAGAG 58.601 45.455 0.00 0.00 0.00 2.85
2300 2838 2.095718 CCAACAGACGCCTAAAAAGAGC 60.096 50.000 0.00 0.00 0.00 4.09
2301 2839 2.808543 CAACAGACGCCTAAAAAGAGCT 59.191 45.455 0.00 0.00 0.00 4.09
2302 2840 2.689646 ACAGACGCCTAAAAAGAGCTC 58.310 47.619 5.27 5.27 0.00 4.09
2303 2841 2.003301 CAGACGCCTAAAAAGAGCTCC 58.997 52.381 10.93 0.00 0.00 4.70
2304 2842 1.000145 GACGCCTAAAAAGAGCTCCG 59.000 55.000 10.93 6.65 0.00 4.63
2305 2843 1.019805 ACGCCTAAAAAGAGCTCCGC 61.020 55.000 10.93 0.07 0.00 5.54
2306 2844 1.716172 GCCTAAAAAGAGCTCCGCG 59.284 57.895 10.93 0.00 0.00 6.46
2307 2845 1.716172 CCTAAAAAGAGCTCCGCGC 59.284 57.895 10.93 0.00 39.57 6.86
2308 2846 1.019278 CCTAAAAAGAGCTCCGCGCA 61.019 55.000 10.93 0.00 42.61 6.09
2309 2847 0.095417 CTAAAAAGAGCTCCGCGCAC 59.905 55.000 10.93 0.00 42.61 5.34
2310 2848 0.320421 TAAAAAGAGCTCCGCGCACT 60.320 50.000 10.93 0.00 41.53 4.40
2311 2849 0.320421 AAAAAGAGCTCCGCGCACTA 60.320 50.000 10.93 0.00 38.68 2.74
2312 2850 0.320421 AAAAGAGCTCCGCGCACTAA 60.320 50.000 10.93 0.00 38.68 2.24
2313 2851 0.320421 AAAGAGCTCCGCGCACTAAA 60.320 50.000 10.93 0.00 38.68 1.85
2314 2852 0.320421 AAGAGCTCCGCGCACTAAAA 60.320 50.000 10.93 0.00 38.68 1.52
2315 2853 0.737715 AGAGCTCCGCGCACTAAAAG 60.738 55.000 10.93 0.00 42.61 2.27
2316 2854 1.004918 AGCTCCGCGCACTAAAAGT 60.005 52.632 8.75 0.00 42.61 2.66
2317 2855 0.602905 AGCTCCGCGCACTAAAAGTT 60.603 50.000 8.75 0.00 42.61 2.66
2318 2856 0.179222 GCTCCGCGCACTAAAAGTTC 60.179 55.000 8.75 0.00 38.92 3.01
2319 2857 0.093026 CTCCGCGCACTAAAAGTTCG 59.907 55.000 8.75 0.00 37.89 3.95
2320 2858 0.598158 TCCGCGCACTAAAAGTTCGT 60.598 50.000 8.75 0.00 37.20 3.85
2321 2859 0.233848 CCGCGCACTAAAAGTTCGTT 59.766 50.000 8.75 0.00 37.20 3.85
2322 2860 1.333435 CCGCGCACTAAAAGTTCGTTT 60.333 47.619 8.75 0.00 37.20 3.60
2323 2861 2.368685 CGCGCACTAAAAGTTCGTTTT 58.631 42.857 8.75 0.00 37.20 2.43
2324 2862 2.779471 CGCGCACTAAAAGTTCGTTTTT 59.221 40.909 8.75 0.00 37.20 1.94
2342 2880 1.067250 TTTTTGAGCGCCCAACAGC 59.933 52.632 2.90 0.00 0.00 4.40
2347 2885 4.711949 AGCGCCCAACAGCTCCAG 62.712 66.667 2.29 0.00 39.98 3.86
2350 2888 2.598394 GCCCAACAGCTCCAGCAA 60.598 61.111 0.48 0.00 45.16 3.91
2351 2889 2.202395 GCCCAACAGCTCCAGCAAA 61.202 57.895 0.48 0.00 45.16 3.68
2352 2890 1.538687 GCCCAACAGCTCCAGCAAAT 61.539 55.000 0.48 0.00 45.16 2.32
2353 2891 0.245539 CCCAACAGCTCCAGCAAATG 59.754 55.000 0.48 0.00 45.16 2.32
2354 2892 0.389426 CCAACAGCTCCAGCAAATGC 60.389 55.000 0.48 0.00 45.16 3.56
2366 2904 2.542766 GCAAATGCTGTAGCGCTAAA 57.457 45.000 20.73 13.83 45.83 1.85
2367 2905 2.862512 GCAAATGCTGTAGCGCTAAAA 58.137 42.857 20.73 9.85 45.83 1.52
2368 2906 3.241701 GCAAATGCTGTAGCGCTAAAAA 58.758 40.909 20.73 5.34 45.83 1.94
2369 2907 3.301642 GCAAATGCTGTAGCGCTAAAAAG 59.698 43.478 20.73 17.38 45.83 2.27
2370 2908 4.475944 CAAATGCTGTAGCGCTAAAAAGT 58.524 39.130 20.73 1.03 45.83 2.66
2371 2909 4.766404 AATGCTGTAGCGCTAAAAAGTT 57.234 36.364 20.73 9.10 45.83 2.66
2372 2910 4.766404 ATGCTGTAGCGCTAAAAAGTTT 57.234 36.364 20.73 6.41 45.83 2.66
2373 2911 4.561735 TGCTGTAGCGCTAAAAAGTTTT 57.438 36.364 20.73 0.00 45.83 2.43
2374 2912 4.286910 TGCTGTAGCGCTAAAAAGTTTTG 58.713 39.130 20.73 0.64 45.83 2.44
2375 2913 3.668656 GCTGTAGCGCTAAAAAGTTTTGG 59.331 43.478 20.73 0.00 0.00 3.28
2376 2914 4.226761 CTGTAGCGCTAAAAAGTTTTGGG 58.773 43.478 20.73 0.27 0.00 4.12
2377 2915 2.148916 AGCGCTAAAAAGTTTTGGGC 57.851 45.000 8.99 15.67 37.38 5.36
2378 2916 0.781787 GCGCTAAAAAGTTTTGGGCG 59.218 50.000 28.24 28.24 46.09 6.13
2379 2917 0.781787 CGCTAAAAAGTTTTGGGCGC 59.218 50.000 24.49 0.00 42.00 6.53
2380 2918 0.781787 GCTAAAAAGTTTTGGGCGCG 59.218 50.000 0.00 0.00 0.00 6.86
2381 2919 1.600912 GCTAAAAAGTTTTGGGCGCGA 60.601 47.619 12.10 0.00 0.00 5.87
2382 2920 2.315901 CTAAAAAGTTTTGGGCGCGAG 58.684 47.619 12.10 0.00 0.00 5.03
2397 2935 2.078547 GCGAGCTGAAAAACGCTATC 57.921 50.000 7.87 0.00 46.06 2.08
2398 2936 1.589968 GCGAGCTGAAAAACGCTATCG 60.590 52.381 7.87 0.00 46.06 2.92
2399 2937 1.589968 CGAGCTGAAAAACGCTATCGC 60.590 52.381 0.00 0.00 39.84 4.58
2420 2958 1.843992 CGCAGCATATTTTGGGCTTC 58.156 50.000 0.00 0.00 35.27 3.86
2421 2959 1.134753 CGCAGCATATTTTGGGCTTCA 59.865 47.619 0.00 0.00 35.27 3.02
2422 2960 2.797087 CGCAGCATATTTTGGGCTTCAG 60.797 50.000 0.00 0.00 35.27 3.02
2423 2961 2.428171 GCAGCATATTTTGGGCTTCAGA 59.572 45.455 0.00 0.00 35.27 3.27
2424 2962 3.069158 GCAGCATATTTTGGGCTTCAGAT 59.931 43.478 0.00 0.00 35.27 2.90
2425 2963 4.442472 GCAGCATATTTTGGGCTTCAGATT 60.442 41.667 0.00 0.00 35.27 2.40
2426 2964 5.047847 CAGCATATTTTGGGCTTCAGATTG 58.952 41.667 0.00 0.00 35.27 2.67
2427 2965 4.100498 AGCATATTTTGGGCTTCAGATTGG 59.900 41.667 0.00 0.00 33.21 3.16
2428 2966 4.741536 GCATATTTTGGGCTTCAGATTGGG 60.742 45.833 0.00 0.00 0.00 4.12
2429 2967 0.975887 TTTTGGGCTTCAGATTGGGC 59.024 50.000 0.00 0.00 0.00 5.36
2430 2968 1.250154 TTTGGGCTTCAGATTGGGCG 61.250 55.000 0.00 0.00 0.00 6.13
2431 2969 3.521796 GGGCTTCAGATTGGGCGC 61.522 66.667 0.00 0.00 0.00 6.53
2432 2970 3.880846 GGCTTCAGATTGGGCGCG 61.881 66.667 0.00 0.00 0.00 6.86
2433 2971 4.543084 GCTTCAGATTGGGCGCGC 62.543 66.667 25.94 25.94 0.00 6.86
2434 2972 2.821366 CTTCAGATTGGGCGCGCT 60.821 61.111 32.29 11.46 0.00 5.92
2435 2973 2.359850 TTCAGATTGGGCGCGCTT 60.360 55.556 32.29 13.60 0.00 4.68
2436 2974 2.315038 CTTCAGATTGGGCGCGCTTC 62.315 60.000 32.29 22.95 0.00 3.86
2437 2975 3.126879 CAGATTGGGCGCGCTTCA 61.127 61.111 32.29 25.28 0.00 3.02
2438 2976 3.127533 AGATTGGGCGCGCTTCAC 61.128 61.111 32.29 18.69 0.00 3.18
2439 2977 3.430862 GATTGGGCGCGCTTCACA 61.431 61.111 32.29 21.06 0.00 3.58
2440 2978 2.976840 GATTGGGCGCGCTTCACAA 61.977 57.895 32.29 27.35 0.00 3.33
2441 2979 2.270297 GATTGGGCGCGCTTCACAAT 62.270 55.000 32.29 30.19 34.73 2.71
2442 2980 1.876497 ATTGGGCGCGCTTCACAATT 61.876 50.000 32.29 15.99 0.00 2.32
2443 2981 2.081425 TTGGGCGCGCTTCACAATTT 62.081 50.000 32.29 0.00 0.00 1.82
2444 2982 2.088178 GGGCGCGCTTCACAATTTG 61.088 57.895 32.29 0.00 0.00 2.32
2445 2983 2.719774 GGCGCGCTTCACAATTTGC 61.720 57.895 32.29 5.31 0.00 3.68
2446 2984 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
2447 2985 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
2448 2986 0.661187 CGCGCTTCACAATTTGCACT 60.661 50.000 5.56 0.00 0.00 4.40
2449 2987 0.780002 GCGCTTCACAATTTGCACTG 59.220 50.000 0.00 0.00 0.00 3.66
2450 2988 1.865248 GCGCTTCACAATTTGCACTGT 60.865 47.619 0.00 0.00 0.00 3.55
2451 2989 2.046313 CGCTTCACAATTTGCACTGTC 58.954 47.619 0.00 0.00 0.00 3.51
2452 2990 2.287188 CGCTTCACAATTTGCACTGTCT 60.287 45.455 0.00 0.00 0.00 3.41
2453 2991 3.047796 GCTTCACAATTTGCACTGTCTG 58.952 45.455 0.00 0.00 0.00 3.51
2463 3001 2.338140 GCACTGTCTGCTTTTTAGGC 57.662 50.000 0.00 0.00 43.33 3.93
2464 3002 1.400242 GCACTGTCTGCTTTTTAGGCG 60.400 52.381 0.00 0.00 43.33 5.52
2465 3003 1.873591 CACTGTCTGCTTTTTAGGCGT 59.126 47.619 0.00 0.00 0.00 5.68
2466 3004 1.873591 ACTGTCTGCTTTTTAGGCGTG 59.126 47.619 0.00 0.00 0.00 5.34
2467 3005 0.591170 TGTCTGCTTTTTAGGCGTGC 59.409 50.000 0.00 0.00 0.00 5.34
2468 3006 0.452784 GTCTGCTTTTTAGGCGTGCG 60.453 55.000 0.00 0.00 0.00 5.34
2469 3007 0.882927 TCTGCTTTTTAGGCGTGCGT 60.883 50.000 0.00 0.00 0.00 5.24
2470 3008 0.452784 CTGCTTTTTAGGCGTGCGTC 60.453 55.000 0.00 0.00 0.00 5.19
2471 3009 0.882927 TGCTTTTTAGGCGTGCGTCT 60.883 50.000 3.70 3.70 0.00 4.18
2472 3010 0.237498 GCTTTTTAGGCGTGCGTCTT 59.763 50.000 3.49 0.00 0.00 3.01
2473 3011 1.334689 GCTTTTTAGGCGTGCGTCTTT 60.335 47.619 3.49 0.00 0.00 2.52
2474 3012 2.096119 GCTTTTTAGGCGTGCGTCTTTA 60.096 45.455 3.49 0.00 0.00 1.85
2475 3013 3.732943 CTTTTTAGGCGTGCGTCTTTAG 58.267 45.455 3.49 0.00 0.00 1.85
2476 3014 1.717194 TTTAGGCGTGCGTCTTTAGG 58.283 50.000 3.49 0.00 0.00 2.69
2477 3015 0.738412 TTAGGCGTGCGTCTTTAGGC 60.738 55.000 3.49 0.00 37.02 3.93
2478 3016 2.877360 TAGGCGTGCGTCTTTAGGCG 62.877 60.000 3.49 0.00 39.39 5.52
2479 3017 3.110178 GCGTGCGTCTTTAGGCGT 61.110 61.111 5.59 0.00 39.39 5.68
2480 3018 3.067846 GCGTGCGTCTTTAGGCGTC 62.068 63.158 5.59 0.00 39.39 5.19
2481 3019 1.443872 CGTGCGTCTTTAGGCGTCT 60.444 57.895 5.59 0.00 39.39 4.18
2482 3020 1.674611 CGTGCGTCTTTAGGCGTCTG 61.675 60.000 0.00 0.00 39.39 3.51
2483 3021 1.736645 TGCGTCTTTAGGCGTCTGC 60.737 57.895 0.00 0.00 39.39 4.26
2484 3022 1.446272 GCGTCTTTAGGCGTCTGCT 60.446 57.895 0.00 0.00 42.25 4.24
2485 3023 0.179145 GCGTCTTTAGGCGTCTGCTA 60.179 55.000 0.00 0.00 42.25 3.49
2486 3024 1.734707 GCGTCTTTAGGCGTCTGCTAA 60.735 52.381 0.00 0.00 42.25 3.09
2487 3025 2.602878 CGTCTTTAGGCGTCTGCTAAA 58.397 47.619 0.00 0.00 42.25 1.85
2488 3026 2.599082 CGTCTTTAGGCGTCTGCTAAAG 59.401 50.000 0.00 1.56 39.94 1.85
2489 3027 2.348971 GTCTTTAGGCGTCTGCTAAAGC 59.651 50.000 0.00 0.00 39.27 3.51
2502 3040 3.626028 GCTAAAGCAATATTGGTCCCG 57.374 47.619 19.80 11.80 41.59 5.14
2503 3041 3.211045 GCTAAAGCAATATTGGTCCCGA 58.789 45.455 19.80 5.76 41.59 5.14
2504 3042 3.003378 GCTAAAGCAATATTGGTCCCGAC 59.997 47.826 19.80 6.31 41.59 4.79
2505 3043 1.663695 AAGCAATATTGGTCCCGACG 58.336 50.000 19.80 0.00 38.04 5.12
2506 3044 0.814010 AGCAATATTGGTCCCGACGC 60.814 55.000 14.31 0.00 32.71 5.19
2507 3045 1.092921 GCAATATTGGTCCCGACGCA 61.093 55.000 17.02 0.00 0.00 5.24
2508 3046 0.655733 CAATATTGGTCCCGACGCAC 59.344 55.000 7.62 0.00 0.00 5.34
2509 3047 0.539986 AATATTGGTCCCGACGCACT 59.460 50.000 0.00 0.00 0.00 4.40
2510 3048 1.405872 ATATTGGTCCCGACGCACTA 58.594 50.000 0.00 0.00 0.00 2.74
2511 3049 1.184431 TATTGGTCCCGACGCACTAA 58.816 50.000 0.00 0.00 0.00 2.24
2512 3050 0.322322 ATTGGTCCCGACGCACTAAA 59.678 50.000 0.00 0.00 0.00 1.85
2513 3051 0.106335 TTGGTCCCGACGCACTAAAA 59.894 50.000 0.00 0.00 0.00 1.52
2514 3052 0.322322 TGGTCCCGACGCACTAAAAT 59.678 50.000 0.00 0.00 0.00 1.82
2515 3053 0.725117 GGTCCCGACGCACTAAAATG 59.275 55.000 0.00 0.00 0.00 2.32
2516 3054 0.096454 GTCCCGACGCACTAAAATGC 59.904 55.000 0.00 0.00 42.48 3.56
2517 3055 0.036765 TCCCGACGCACTAAAATGCT 60.037 50.000 0.00 0.00 43.80 3.79
2518 3056 1.205179 TCCCGACGCACTAAAATGCTA 59.795 47.619 0.00 0.00 43.80 3.49
2519 3057 1.326548 CCCGACGCACTAAAATGCTAC 59.673 52.381 0.00 0.00 43.80 3.58
2520 3058 1.996898 CCGACGCACTAAAATGCTACA 59.003 47.619 0.00 0.00 43.80 2.74
2521 3059 2.029244 CCGACGCACTAAAATGCTACAG 59.971 50.000 0.00 0.00 43.80 2.74
2522 3060 2.666508 CGACGCACTAAAATGCTACAGT 59.333 45.455 0.00 0.00 43.80 3.55
2523 3061 3.481951 CGACGCACTAAAATGCTACAGTG 60.482 47.826 0.00 0.00 43.80 3.66
2524 3062 3.399330 ACGCACTAAAATGCTACAGTGT 58.601 40.909 0.00 0.00 43.80 3.55
2525 3063 3.432252 ACGCACTAAAATGCTACAGTGTC 59.568 43.478 0.00 0.00 43.80 3.67
2526 3064 3.431912 CGCACTAAAATGCTACAGTGTCA 59.568 43.478 0.00 0.00 43.80 3.58
2527 3065 4.666655 CGCACTAAAATGCTACAGTGTCAC 60.667 45.833 0.00 0.00 43.80 3.67
2528 3066 4.666655 GCACTAAAATGCTACAGTGTCACG 60.667 45.833 0.00 0.00 42.62 4.35
2529 3067 2.969443 AAAATGCTACAGTGTCACGC 57.031 45.000 0.00 1.84 0.00 5.34
2530 3068 2.169832 AAATGCTACAGTGTCACGCT 57.830 45.000 0.00 0.00 0.00 5.07
2531 3069 3.313012 AAATGCTACAGTGTCACGCTA 57.687 42.857 0.00 0.00 0.00 4.26
2532 3070 3.526931 AATGCTACAGTGTCACGCTAT 57.473 42.857 0.00 0.00 0.00 2.97
2533 3071 4.649088 AATGCTACAGTGTCACGCTATA 57.351 40.909 0.00 0.00 0.00 1.31
2534 3072 4.649088 ATGCTACAGTGTCACGCTATAA 57.351 40.909 0.00 0.00 0.00 0.98
2535 3073 4.443913 TGCTACAGTGTCACGCTATAAA 57.556 40.909 0.00 0.00 0.00 1.40
2536 3074 5.006153 TGCTACAGTGTCACGCTATAAAT 57.994 39.130 0.00 0.00 0.00 1.40
2537 3075 5.416083 TGCTACAGTGTCACGCTATAAATT 58.584 37.500 0.00 0.00 0.00 1.82
2538 3076 5.872617 TGCTACAGTGTCACGCTATAAATTT 59.127 36.000 0.00 0.00 0.00 1.82
2539 3077 6.370442 TGCTACAGTGTCACGCTATAAATTTT 59.630 34.615 0.00 0.00 0.00 1.82
2540 3078 7.546316 TGCTACAGTGTCACGCTATAAATTTTA 59.454 33.333 0.00 0.00 0.00 1.52
2541 3079 8.548721 GCTACAGTGTCACGCTATAAATTTTAT 58.451 33.333 0.00 6.85 0.00 1.40
2544 3082 8.181573 ACAGTGTCACGCTATAAATTTTATTGG 58.818 33.333 6.95 3.12 0.00 3.16
2545 3083 7.643764 CAGTGTCACGCTATAAATTTTATTGGG 59.356 37.037 18.87 18.87 0.00 4.12
2546 3084 6.416750 GTGTCACGCTATAAATTTTATTGGGC 59.583 38.462 19.78 14.45 0.00 5.36
2547 3085 5.623673 GTCACGCTATAAATTTTATTGGGCG 59.376 40.000 24.71 24.71 44.49 6.13
2548 3086 4.381566 CACGCTATAAATTTTATTGGGCGC 59.618 41.667 25.44 0.00 43.08 6.53
2549 3087 3.602062 CGCTATAAATTTTATTGGGCGCG 59.398 43.478 19.91 0.00 34.19 6.86
2550 3088 4.611807 CGCTATAAATTTTATTGGGCGCGA 60.612 41.667 12.10 0.00 38.13 5.87
2551 3089 4.851558 GCTATAAATTTTATTGGGCGCGAG 59.148 41.667 12.10 0.00 0.00 5.03
2552 3090 5.334569 GCTATAAATTTTATTGGGCGCGAGA 60.335 40.000 12.10 0.00 0.00 4.04
2553 3091 5.705609 ATAAATTTTATTGGGCGCGAGAT 57.294 34.783 12.10 0.00 0.00 2.75
2554 3092 4.385358 AAATTTTATTGGGCGCGAGATT 57.615 36.364 12.10 0.00 0.00 2.40
2555 3093 4.385358 AATTTTATTGGGCGCGAGATTT 57.615 36.364 12.10 0.00 0.00 2.17
2556 3094 3.859411 TTTTATTGGGCGCGAGATTTT 57.141 38.095 12.10 0.00 0.00 1.82
2557 3095 3.859411 TTTATTGGGCGCGAGATTTTT 57.141 38.095 12.10 0.00 0.00 1.94
2558 3096 4.966965 TTTATTGGGCGCGAGATTTTTA 57.033 36.364 12.10 0.00 0.00 1.52
2559 3097 5.508200 TTTATTGGGCGCGAGATTTTTAT 57.492 34.783 12.10 0.00 0.00 1.40
2560 3098 2.842208 TTGGGCGCGAGATTTTTATG 57.158 45.000 12.10 0.00 0.00 1.90
2561 3099 0.380378 TGGGCGCGAGATTTTTATGC 59.620 50.000 12.10 0.00 0.00 3.14
2564 3102 2.770818 CGCGAGATTTTTATGCGGC 58.229 52.632 0.00 0.00 44.65 6.53
2565 3103 0.657368 CGCGAGATTTTTATGCGGCC 60.657 55.000 0.00 0.00 44.65 6.13
2566 3104 0.657368 GCGAGATTTTTATGCGGCCG 60.657 55.000 24.05 24.05 0.00 6.13
2567 3105 0.655733 CGAGATTTTTATGCGGCCGT 59.344 50.000 28.70 10.76 0.00 5.68
2568 3106 1.063469 CGAGATTTTTATGCGGCCGTT 59.937 47.619 28.70 17.38 0.00 4.44
2569 3107 2.450160 GAGATTTTTATGCGGCCGTTG 58.550 47.619 28.70 0.00 0.00 4.10
2570 3108 1.134175 AGATTTTTATGCGGCCGTTGG 59.866 47.619 28.70 0.00 0.00 3.77
2571 3109 1.133407 GATTTTTATGCGGCCGTTGGA 59.867 47.619 28.70 8.98 0.00 3.53
2572 3110 0.523966 TTTTTATGCGGCCGTTGGAG 59.476 50.000 28.70 0.00 0.00 3.86
2573 3111 0.321741 TTTTATGCGGCCGTTGGAGA 60.322 50.000 28.70 6.64 0.00 3.71
2574 3112 0.107410 TTTATGCGGCCGTTGGAGAT 60.107 50.000 28.70 11.50 0.00 2.75
2575 3113 0.813610 TTATGCGGCCGTTGGAGATG 60.814 55.000 28.70 0.00 0.00 2.90
2578 3116 2.892425 CGGCCGTTGGAGATGCTC 60.892 66.667 19.50 0.00 0.00 4.26
2579 3117 2.586792 GGCCGTTGGAGATGCTCT 59.413 61.111 0.00 0.00 0.00 4.09
2580 3118 1.817099 GGCCGTTGGAGATGCTCTG 60.817 63.158 0.00 0.00 0.00 3.35
2581 3119 1.219124 GCCGTTGGAGATGCTCTGA 59.781 57.895 0.00 0.00 0.00 3.27
2582 3120 0.809241 GCCGTTGGAGATGCTCTGAG 60.809 60.000 0.00 0.00 0.00 3.35
2583 3121 0.179089 CCGTTGGAGATGCTCTGAGG 60.179 60.000 6.83 0.00 0.00 3.86
2584 3122 0.179089 CGTTGGAGATGCTCTGAGGG 60.179 60.000 6.83 0.00 0.00 4.30
2638 3176 2.125912 CACGCCAGGGAGAAGACG 60.126 66.667 0.00 0.00 0.00 4.18
2653 3191 2.683933 ACGAAGAGCCCGGGTCAT 60.684 61.111 24.63 11.44 31.89 3.06
2669 3207 1.143183 CATGCCATCTTGCCCTTGC 59.857 57.895 0.00 0.00 38.26 4.01
2670 3208 1.001248 ATGCCATCTTGCCCTTGCT 59.999 52.632 0.00 0.00 38.71 3.91
2671 3209 1.041447 ATGCCATCTTGCCCTTGCTC 61.041 55.000 0.00 0.00 38.71 4.26
2672 3210 1.379576 GCCATCTTGCCCTTGCTCT 60.380 57.895 0.00 0.00 38.71 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.737715 GCCATGACTCTCGCGAAAGT 60.738 55.000 16.32 16.32 0.00 2.66
467 924 4.273724 TCGAGATCTTCAACACTAGATCCG 59.726 45.833 0.00 10.68 45.05 4.18
477 935 3.307829 TCGCGTCGAGATCTTCAAC 57.692 52.632 5.77 0.00 0.00 3.18
759 1252 7.820044 ATATTGACTCGAGTTTCTTCTGTTC 57.180 36.000 21.08 2.97 0.00 3.18
787 1280 1.025113 GGTTGTAGCTTCTTCCGCCC 61.025 60.000 0.00 0.00 0.00 6.13
789 1282 1.464997 CTTGGTTGTAGCTTCTTCCGC 59.535 52.381 0.00 0.00 0.00 5.54
860 1355 0.174617 GGTAGAGAGCACAGGACTGC 59.825 60.000 0.00 0.00 37.44 4.40
882 1377 4.202388 TGGGAAGAAAGCGGTTAACTAGTT 60.202 41.667 13.68 13.68 0.00 2.24
903 1398 1.021390 AAGATCCTGTTCGCGCTTGG 61.021 55.000 5.56 0.53 0.00 3.61
943 1438 2.312390 GGGCTAAAGAGGAGAGACGAT 58.688 52.381 0.00 0.00 0.00 3.73
1064 1559 2.513897 GGTGGATAGCACGGGCAC 60.514 66.667 14.57 0.00 44.61 5.01
1074 1569 3.475174 AGGGAAGGAAGATAGGGTGGATA 59.525 47.826 0.00 0.00 0.00 2.59
1175 1670 9.249457 CGTTGTAGATTCATTCACTGTATGTAT 57.751 33.333 0.00 0.00 0.00 2.29
1176 1671 8.248253 ACGTTGTAGATTCATTCACTGTATGTA 58.752 33.333 0.00 0.00 0.00 2.29
1177 1672 7.063426 CACGTTGTAGATTCATTCACTGTATGT 59.937 37.037 0.00 0.00 0.00 2.29
1178 1673 7.394099 CACGTTGTAGATTCATTCACTGTATG 58.606 38.462 0.00 0.00 0.00 2.39
1392 1887 4.593864 GCCCTCATCGCCTCGTCC 62.594 72.222 0.00 0.00 0.00 4.79
1501 1996 2.815647 CCCCTTCTTGAGCGTCGC 60.816 66.667 9.80 9.80 0.00 5.19
1533 2028 0.179116 CAGACAGCTCCGACATGAGG 60.179 60.000 0.00 2.23 32.81 3.86
1706 2201 4.827087 AGCTGGCCTGCATCGTCG 62.827 66.667 32.96 0.00 34.99 5.12
1814 2315 7.997482 TCCTAGATGACAAATCTACACACTAC 58.003 38.462 0.00 0.00 0.00 2.73
1927 2449 5.629079 AAAGAAGATCCATTCCGACAAAC 57.371 39.130 0.00 0.00 0.00 2.93
1971 2493 5.338626 GCATCTTTTCAAGGGGGAATTTGAT 60.339 40.000 0.00 0.00 33.68 2.57
1972 2494 4.020307 GCATCTTTTCAAGGGGGAATTTGA 60.020 41.667 0.00 0.00 0.00 2.69
2040 2562 2.770447 TGGTTGGGCCTCATGAGTATA 58.230 47.619 21.11 2.33 38.35 1.47
2052 2574 3.532155 TTGCGTGGTTGGTTGGGC 61.532 61.111 0.00 0.00 0.00 5.36
2053 2575 2.415426 GTTGCGTGGTTGGTTGGG 59.585 61.111 0.00 0.00 0.00 4.12
2054 2576 1.226831 GTGTTGCGTGGTTGGTTGG 60.227 57.895 0.00 0.00 0.00 3.77
2055 2577 1.226831 GGTGTTGCGTGGTTGGTTG 60.227 57.895 0.00 0.00 0.00 3.77
2056 2578 1.662438 CTGGTGTTGCGTGGTTGGTT 61.662 55.000 0.00 0.00 0.00 3.67
2057 2579 2.044848 TGGTGTTGCGTGGTTGGT 60.045 55.556 0.00 0.00 0.00 3.67
2058 2580 2.721231 CTGGTGTTGCGTGGTTGG 59.279 61.111 0.00 0.00 0.00 3.77
2059 2581 2.026014 GCTGGTGTTGCGTGGTTG 59.974 61.111 0.00 0.00 0.00 3.77
2060 2582 3.216292 GGCTGGTGTTGCGTGGTT 61.216 61.111 0.00 0.00 0.00 3.67
2061 2583 3.714487 AAGGCTGGTGTTGCGTGGT 62.714 57.895 0.00 0.00 0.00 4.16
2062 2584 2.489275 AAAGGCTGGTGTTGCGTGG 61.489 57.895 0.00 0.00 0.00 4.94
2063 2585 1.299316 CAAAGGCTGGTGTTGCGTG 60.299 57.895 0.00 0.00 0.00 5.34
2064 2586 3.119193 CAAAGGCTGGTGTTGCGT 58.881 55.556 0.00 0.00 0.00 5.24
2065 2587 2.355009 GCAAAGGCTGGTGTTGCG 60.355 61.111 5.93 0.00 38.39 4.85
2066 2588 2.355009 CGCAAAGGCTGGTGTTGC 60.355 61.111 10.81 10.81 43.32 4.17
2080 2602 0.601558 GACAGAGGGAGTACAACGCA 59.398 55.000 0.00 0.00 0.00 5.24
2089 2611 4.576330 AAGTAATTTGGGACAGAGGGAG 57.424 45.455 0.00 0.00 42.39 4.30
2090 2612 5.163343 CGATAAGTAATTTGGGACAGAGGGA 60.163 44.000 0.00 0.00 42.39 4.20
2091 2613 5.057149 CGATAAGTAATTTGGGACAGAGGG 58.943 45.833 0.00 0.00 42.39 4.30
2092 2614 4.511826 GCGATAAGTAATTTGGGACAGAGG 59.488 45.833 0.00 0.00 42.39 3.69
2093 2615 5.116180 TGCGATAAGTAATTTGGGACAGAG 58.884 41.667 0.00 0.00 42.39 3.35
2094 2616 5.092554 TGCGATAAGTAATTTGGGACAGA 57.907 39.130 0.00 0.00 42.39 3.41
2095 2617 7.490962 TTATGCGATAAGTAATTTGGGACAG 57.509 36.000 0.00 0.00 42.39 3.51
2096 2618 7.867305 TTTATGCGATAAGTAATTTGGGACA 57.133 32.000 0.00 0.00 0.00 4.02
2150 2672 9.698309 CAGAAATGGACGTATCTAGACATATTT 57.302 33.333 0.00 0.00 0.00 1.40
2151 2673 7.815068 GCAGAAATGGACGTATCTAGACATATT 59.185 37.037 0.00 0.00 0.00 1.28
2152 2674 7.316640 GCAGAAATGGACGTATCTAGACATAT 58.683 38.462 0.00 0.00 0.00 1.78
2153 2675 6.567891 CGCAGAAATGGACGTATCTAGACATA 60.568 42.308 0.00 0.00 0.00 2.29
2154 2676 5.533482 GCAGAAATGGACGTATCTAGACAT 58.467 41.667 0.00 0.00 0.00 3.06
2155 2677 4.497507 CGCAGAAATGGACGTATCTAGACA 60.498 45.833 0.00 0.00 0.00 3.41
2156 2678 3.975670 CGCAGAAATGGACGTATCTAGAC 59.024 47.826 0.00 0.00 0.00 2.59
2157 2679 3.881089 TCGCAGAAATGGACGTATCTAGA 59.119 43.478 0.00 0.00 0.00 2.43
2158 2680 3.975670 GTCGCAGAAATGGACGTATCTAG 59.024 47.826 0.00 0.00 39.69 2.43
2159 2681 3.379057 TGTCGCAGAAATGGACGTATCTA 59.621 43.478 0.00 0.00 39.69 1.98
2160 2682 2.165641 TGTCGCAGAAATGGACGTATCT 59.834 45.455 0.00 0.00 39.69 1.98
2161 2683 2.536365 TGTCGCAGAAATGGACGTATC 58.464 47.619 0.00 0.00 39.69 2.24
2162 2684 2.665649 TGTCGCAGAAATGGACGTAT 57.334 45.000 0.00 0.00 39.69 3.06
2163 2685 2.288579 ACTTGTCGCAGAAATGGACGTA 60.289 45.455 0.00 0.00 39.69 3.57
2164 2686 1.148310 CTTGTCGCAGAAATGGACGT 58.852 50.000 0.00 0.00 39.69 4.34
2165 2687 1.148310 ACTTGTCGCAGAAATGGACG 58.852 50.000 0.00 0.00 39.69 4.79
2166 2688 4.946784 ATTACTTGTCGCAGAAATGGAC 57.053 40.909 0.00 0.00 39.69 4.02
2167 2689 5.390461 CGAAATTACTTGTCGCAGAAATGGA 60.390 40.000 0.00 0.00 39.69 3.41
2168 2690 4.788100 CGAAATTACTTGTCGCAGAAATGG 59.212 41.667 0.00 0.00 39.69 3.16
2169 2691 4.788100 CCGAAATTACTTGTCGCAGAAATG 59.212 41.667 0.00 0.00 39.69 2.32
2170 2692 4.693566 TCCGAAATTACTTGTCGCAGAAAT 59.306 37.500 0.00 0.00 39.69 2.17
2171 2693 4.059511 TCCGAAATTACTTGTCGCAGAAA 58.940 39.130 0.00 0.00 39.69 2.52
2172 2694 3.430895 GTCCGAAATTACTTGTCGCAGAA 59.569 43.478 0.00 0.00 39.69 3.02
2173 2695 2.991190 GTCCGAAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 33.46 4.26
2174 2696 2.222508 CGTCCGAAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 33.46 5.18
2175 2697 1.722464 CGTCCGAAATTACTTGTCGCA 59.278 47.619 0.00 0.00 33.46 5.10
2176 2698 1.060122 CCGTCCGAAATTACTTGTCGC 59.940 52.381 0.00 0.00 33.46 5.19
2177 2699 2.597305 CTCCGTCCGAAATTACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
2178 2700 2.928116 CCTCCGTCCGAAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2179 2701 2.354403 CCCTCCGTCCGAAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2180 2702 2.277084 CCCTCCGTCCGAAATTACTTG 58.723 52.381 0.00 0.00 0.00 3.16
2181 2703 1.904537 ACCCTCCGTCCGAAATTACTT 59.095 47.619 0.00 0.00 0.00 2.24
2182 2704 1.565067 ACCCTCCGTCCGAAATTACT 58.435 50.000 0.00 0.00 0.00 2.24
2183 2705 3.740631 ATACCCTCCGTCCGAAATTAC 57.259 47.619 0.00 0.00 0.00 1.89
2184 2706 4.895297 AGTTATACCCTCCGTCCGAAATTA 59.105 41.667 0.00 0.00 0.00 1.40
2185 2707 3.708121 AGTTATACCCTCCGTCCGAAATT 59.292 43.478 0.00 0.00 0.00 1.82
2186 2708 3.303049 AGTTATACCCTCCGTCCGAAAT 58.697 45.455 0.00 0.00 0.00 2.17
2187 2709 2.738743 AGTTATACCCTCCGTCCGAAA 58.261 47.619 0.00 0.00 0.00 3.46
2188 2710 2.428171 CAAGTTATACCCTCCGTCCGAA 59.572 50.000 0.00 0.00 0.00 4.30
2189 2711 2.026641 CAAGTTATACCCTCCGTCCGA 58.973 52.381 0.00 0.00 0.00 4.55
2190 2712 1.753073 ACAAGTTATACCCTCCGTCCG 59.247 52.381 0.00 0.00 0.00 4.79
2191 2713 2.223665 CGACAAGTTATACCCTCCGTCC 60.224 54.545 0.00 0.00 0.00 4.79
2192 2714 2.223665 CCGACAAGTTATACCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
2193 2715 1.753073 CCGACAAGTTATACCCTCCGT 59.247 52.381 0.00 0.00 0.00 4.69
2194 2716 2.026641 TCCGACAAGTTATACCCTCCG 58.973 52.381 0.00 0.00 0.00 4.63
2195 2717 3.640029 TCATCCGACAAGTTATACCCTCC 59.360 47.826 0.00 0.00 0.00 4.30
2196 2718 4.931661 TCATCCGACAAGTTATACCCTC 57.068 45.455 0.00 0.00 0.00 4.30
2197 2719 4.101119 CCTTCATCCGACAAGTTATACCCT 59.899 45.833 0.00 0.00 0.00 4.34
2198 2720 4.100498 TCCTTCATCCGACAAGTTATACCC 59.900 45.833 0.00 0.00 0.00 3.69
2199 2721 5.272283 TCCTTCATCCGACAAGTTATACC 57.728 43.478 0.00 0.00 0.00 2.73
2200 2722 6.513180 TCATCCTTCATCCGACAAGTTATAC 58.487 40.000 0.00 0.00 0.00 1.47
2249 2787 3.932710 CGTTCATCGAGGAGATTTGGAAA 59.067 43.478 0.00 0.00 42.86 3.13
2250 2788 3.194755 TCGTTCATCGAGGAGATTTGGAA 59.805 43.478 0.00 0.00 44.01 3.53
2265 2803 0.317160 TGTTGGAGTCGCTCGTTCAT 59.683 50.000 1.64 0.00 0.00 2.57
2269 2807 1.286260 GTCTGTTGGAGTCGCTCGT 59.714 57.895 1.64 0.00 0.00 4.18
2270 2808 1.797933 CGTCTGTTGGAGTCGCTCG 60.798 63.158 1.64 0.00 0.00 5.03
2271 2809 4.154613 CGTCTGTTGGAGTCGCTC 57.845 61.111 0.00 0.00 0.00 5.03
2274 2812 0.242825 TTAGGCGTCTGTTGGAGTCG 59.757 55.000 0.00 0.00 36.44 4.18
2275 2813 2.450609 TTTAGGCGTCTGTTGGAGTC 57.549 50.000 0.00 0.00 0.00 3.36
2276 2814 2.922740 TTTTAGGCGTCTGTTGGAGT 57.077 45.000 0.00 0.00 0.00 3.85
2277 2815 3.399330 TCTTTTTAGGCGTCTGTTGGAG 58.601 45.455 0.00 0.00 0.00 3.86
2278 2816 3.399330 CTCTTTTTAGGCGTCTGTTGGA 58.601 45.455 0.00 0.00 0.00 3.53
2279 2817 2.095718 GCTCTTTTTAGGCGTCTGTTGG 60.096 50.000 0.00 0.00 0.00 3.77
2280 2818 2.808543 AGCTCTTTTTAGGCGTCTGTTG 59.191 45.455 0.00 0.00 0.00 3.33
2281 2819 3.067833 GAGCTCTTTTTAGGCGTCTGTT 58.932 45.455 6.43 0.00 0.00 3.16
2282 2820 2.613223 GGAGCTCTTTTTAGGCGTCTGT 60.613 50.000 14.64 0.00 0.00 3.41
2283 2821 2.003301 GGAGCTCTTTTTAGGCGTCTG 58.997 52.381 14.64 0.00 0.00 3.51
2284 2822 1.404315 CGGAGCTCTTTTTAGGCGTCT 60.404 52.381 14.64 0.00 0.00 4.18
2285 2823 1.000145 CGGAGCTCTTTTTAGGCGTC 59.000 55.000 14.64 0.00 0.00 5.19
2286 2824 3.139029 CGGAGCTCTTTTTAGGCGT 57.861 52.632 14.64 0.00 0.00 5.68
2300 2838 0.093026 CGAACTTTTAGTGCGCGGAG 59.907 55.000 8.83 0.00 40.83 4.63
2301 2839 2.146954 CGAACTTTTAGTGCGCGGA 58.853 52.632 8.83 0.00 40.83 5.54
2302 2840 4.717917 CGAACTTTTAGTGCGCGG 57.282 55.556 8.83 0.00 40.83 6.46
2324 2862 1.067250 GCTGTTGGGCGCTCAAAAA 59.933 52.632 27.07 15.43 0.00 1.94
2325 2863 1.827789 AGCTGTTGGGCGCTCAAAA 60.828 52.632 27.07 20.09 37.29 2.44
2326 2864 2.203337 AGCTGTTGGGCGCTCAAA 60.203 55.556 27.07 14.11 37.29 2.69
2330 2868 4.711949 CTGGAGCTGTTGGGCGCT 62.712 66.667 7.64 0.00 39.61 5.92
2333 2871 1.538687 ATTTGCTGGAGCTGTTGGGC 61.539 55.000 0.00 0.00 42.66 5.36
2334 2872 0.245539 CATTTGCTGGAGCTGTTGGG 59.754 55.000 0.00 0.00 42.66 4.12
2335 2873 0.389426 GCATTTGCTGGAGCTGTTGG 60.389 55.000 0.00 0.00 42.66 3.77
2336 2874 3.117589 GCATTTGCTGGAGCTGTTG 57.882 52.632 0.00 0.00 42.66 3.33
2347 2885 2.542766 TTTAGCGCTACAGCATTTGC 57.457 45.000 18.63 0.00 42.21 3.68
2348 2886 4.475944 ACTTTTTAGCGCTACAGCATTTG 58.524 39.130 18.63 4.93 42.21 2.32
2349 2887 4.766404 ACTTTTTAGCGCTACAGCATTT 57.234 36.364 18.63 0.00 42.21 2.32
2350 2888 4.766404 AACTTTTTAGCGCTACAGCATT 57.234 36.364 18.63 6.62 42.21 3.56
2351 2889 4.766404 AAACTTTTTAGCGCTACAGCAT 57.234 36.364 18.63 0.00 42.21 3.79
2352 2890 4.286910 CAAAACTTTTTAGCGCTACAGCA 58.713 39.130 18.63 0.00 42.21 4.41
2353 2891 3.668656 CCAAAACTTTTTAGCGCTACAGC 59.331 43.478 18.63 0.00 37.78 4.40
2354 2892 4.226761 CCCAAAACTTTTTAGCGCTACAG 58.773 43.478 18.63 15.46 0.00 2.74
2355 2893 3.551250 GCCCAAAACTTTTTAGCGCTACA 60.551 43.478 18.63 8.18 0.00 2.74
2356 2894 2.984471 GCCCAAAACTTTTTAGCGCTAC 59.016 45.455 18.63 0.00 0.00 3.58
2357 2895 2.350964 CGCCCAAAACTTTTTAGCGCTA 60.351 45.455 14.45 14.45 41.67 4.26
2358 2896 1.601914 CGCCCAAAACTTTTTAGCGCT 60.602 47.619 17.26 17.26 41.67 5.92
2359 2897 0.781787 CGCCCAAAACTTTTTAGCGC 59.218 50.000 14.39 0.00 41.67 5.92
2360 2898 0.781787 GCGCCCAAAACTTTTTAGCG 59.218 50.000 19.19 19.19 46.24 4.26
2361 2899 0.781787 CGCGCCCAAAACTTTTTAGC 59.218 50.000 0.00 0.00 0.00 3.09
2362 2900 2.315901 CTCGCGCCCAAAACTTTTTAG 58.684 47.619 0.00 0.00 0.00 1.85
2363 2901 1.600912 GCTCGCGCCCAAAACTTTTTA 60.601 47.619 0.00 0.00 0.00 1.52
2364 2902 0.874175 GCTCGCGCCCAAAACTTTTT 60.874 50.000 0.00 0.00 0.00 1.94
2365 2903 1.299850 GCTCGCGCCCAAAACTTTT 60.300 52.632 0.00 0.00 0.00 2.27
2366 2904 2.193536 AGCTCGCGCCCAAAACTTT 61.194 52.632 0.00 0.00 36.60 2.66
2367 2905 2.594592 AGCTCGCGCCCAAAACTT 60.595 55.556 0.00 0.00 36.60 2.66
2368 2906 3.357079 CAGCTCGCGCCCAAAACT 61.357 61.111 0.00 0.00 36.60 2.66
2369 2907 2.400896 TTTCAGCTCGCGCCCAAAAC 62.401 55.000 0.00 0.00 36.60 2.43
2370 2908 1.729470 TTTTCAGCTCGCGCCCAAAA 61.729 50.000 0.00 0.00 36.60 2.44
2371 2909 1.729470 TTTTTCAGCTCGCGCCCAAA 61.729 50.000 0.00 0.00 36.60 3.28
2372 2910 2.190170 TTTTTCAGCTCGCGCCCAA 61.190 52.632 0.00 0.00 36.60 4.12
2373 2911 2.593148 TTTTTCAGCTCGCGCCCA 60.593 55.556 0.00 0.00 36.60 5.36
2374 2912 2.126850 GTTTTTCAGCTCGCGCCC 60.127 61.111 0.00 0.00 36.60 6.13
2375 2913 2.499732 CGTTTTTCAGCTCGCGCC 60.500 61.111 0.00 0.00 36.60 6.53
2376 2914 3.159460 GCGTTTTTCAGCTCGCGC 61.159 61.111 0.00 0.00 39.35 6.86
2379 2917 2.337728 CGATAGCGTTTTTCAGCTCG 57.662 50.000 0.00 0.00 43.44 5.03
2393 2931 0.439985 AAATATGCTGCGCGCGATAG 59.560 50.000 37.18 29.48 43.27 2.08
2394 2932 0.865111 AAAATATGCTGCGCGCGATA 59.135 45.000 37.18 22.34 43.27 2.92
2395 2933 0.658244 CAAAATATGCTGCGCGCGAT 60.658 50.000 37.18 20.72 43.27 4.58
2396 2934 1.297524 CAAAATATGCTGCGCGCGA 60.298 52.632 37.18 17.91 43.27 5.87
2397 2935 2.287965 CCAAAATATGCTGCGCGCG 61.288 57.895 28.44 28.44 43.27 6.86
2398 2936 1.945662 CCCAAAATATGCTGCGCGC 60.946 57.895 27.26 27.26 39.77 6.86
2399 2937 1.945662 GCCCAAAATATGCTGCGCG 60.946 57.895 0.00 0.00 0.00 6.86
2400 2938 0.179103 AAGCCCAAAATATGCTGCGC 60.179 50.000 0.00 0.00 35.08 6.09
2401 2939 1.134753 TGAAGCCCAAAATATGCTGCG 59.865 47.619 0.00 0.00 33.07 5.18
2402 2940 2.428171 TCTGAAGCCCAAAATATGCTGC 59.572 45.455 0.00 0.00 35.08 5.25
2403 2941 4.931661 ATCTGAAGCCCAAAATATGCTG 57.068 40.909 0.00 0.00 35.08 4.41
2404 2942 4.100498 CCAATCTGAAGCCCAAAATATGCT 59.900 41.667 0.00 0.00 36.79 3.79
2405 2943 4.374399 CCAATCTGAAGCCCAAAATATGC 58.626 43.478 0.00 0.00 0.00 3.14
2406 2944 4.741536 GCCCAATCTGAAGCCCAAAATATG 60.742 45.833 0.00 0.00 0.00 1.78
2407 2945 3.389002 GCCCAATCTGAAGCCCAAAATAT 59.611 43.478 0.00 0.00 0.00 1.28
2408 2946 2.765699 GCCCAATCTGAAGCCCAAAATA 59.234 45.455 0.00 0.00 0.00 1.40
2409 2947 1.556451 GCCCAATCTGAAGCCCAAAAT 59.444 47.619 0.00 0.00 0.00 1.82
2410 2948 0.975887 GCCCAATCTGAAGCCCAAAA 59.024 50.000 0.00 0.00 0.00 2.44
2411 2949 1.250154 CGCCCAATCTGAAGCCCAAA 61.250 55.000 0.00 0.00 0.00 3.28
2412 2950 1.678635 CGCCCAATCTGAAGCCCAA 60.679 57.895 0.00 0.00 0.00 4.12
2413 2951 2.045045 CGCCCAATCTGAAGCCCA 60.045 61.111 0.00 0.00 0.00 5.36
2414 2952 3.521796 GCGCCCAATCTGAAGCCC 61.522 66.667 0.00 0.00 0.00 5.19
2415 2953 3.880846 CGCGCCCAATCTGAAGCC 61.881 66.667 0.00 0.00 0.00 4.35
2416 2954 4.543084 GCGCGCCCAATCTGAAGC 62.543 66.667 23.24 0.00 0.00 3.86
2417 2955 2.315038 GAAGCGCGCCCAATCTGAAG 62.315 60.000 30.33 0.00 0.00 3.02
2418 2956 2.359850 AAGCGCGCCCAATCTGAA 60.360 55.556 30.33 0.00 0.00 3.02
2419 2957 2.819595 GAAGCGCGCCCAATCTGA 60.820 61.111 30.33 0.00 0.00 3.27
2420 2958 3.126879 TGAAGCGCGCCCAATCTG 61.127 61.111 30.33 0.00 0.00 2.90
2421 2959 3.127533 GTGAAGCGCGCCCAATCT 61.128 61.111 30.33 4.55 0.00 2.40
2422 2960 2.270297 ATTGTGAAGCGCGCCCAATC 62.270 55.000 30.33 20.88 0.00 2.67
2423 2961 1.876497 AATTGTGAAGCGCGCCCAAT 61.876 50.000 30.33 25.24 0.00 3.16
2424 2962 2.081425 AAATTGTGAAGCGCGCCCAA 62.081 50.000 30.33 24.18 0.00 4.12
2425 2963 2.560119 AAATTGTGAAGCGCGCCCA 61.560 52.632 30.33 23.41 0.00 5.36
2426 2964 2.088178 CAAATTGTGAAGCGCGCCC 61.088 57.895 30.33 20.83 0.00 6.13
2427 2965 2.719774 GCAAATTGTGAAGCGCGCC 61.720 57.895 30.33 14.69 0.00 6.53
2428 2966 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
2429 2967 0.661187 AGTGCAAATTGTGAAGCGCG 60.661 50.000 0.00 0.00 41.96 6.86
2430 2968 0.780002 CAGTGCAAATTGTGAAGCGC 59.220 50.000 0.00 0.00 37.74 5.92
2431 2969 2.046313 GACAGTGCAAATTGTGAAGCG 58.954 47.619 4.67 0.00 0.00 4.68
2432 2970 3.047796 CAGACAGTGCAAATTGTGAAGC 58.952 45.455 4.67 0.00 0.00 3.86
2445 2983 1.873591 ACGCCTAAAAAGCAGACAGTG 59.126 47.619 0.00 0.00 0.00 3.66
2446 2984 1.873591 CACGCCTAAAAAGCAGACAGT 59.126 47.619 0.00 0.00 0.00 3.55
2447 2985 1.400242 GCACGCCTAAAAAGCAGACAG 60.400 52.381 0.00 0.00 0.00 3.51
2448 2986 0.591170 GCACGCCTAAAAAGCAGACA 59.409 50.000 0.00 0.00 0.00 3.41
2449 2987 0.452784 CGCACGCCTAAAAAGCAGAC 60.453 55.000 0.00 0.00 0.00 3.51
2450 2988 0.882927 ACGCACGCCTAAAAAGCAGA 60.883 50.000 0.00 0.00 0.00 4.26
2451 2989 0.452784 GACGCACGCCTAAAAAGCAG 60.453 55.000 0.00 0.00 0.00 4.24
2452 2990 0.882927 AGACGCACGCCTAAAAAGCA 60.883 50.000 0.00 0.00 0.00 3.91
2453 2991 0.237498 AAGACGCACGCCTAAAAAGC 59.763 50.000 0.00 0.00 0.00 3.51
2454 2992 2.681152 AAAGACGCACGCCTAAAAAG 57.319 45.000 0.00 0.00 0.00 2.27
2455 2993 2.481185 CCTAAAGACGCACGCCTAAAAA 59.519 45.455 0.00 0.00 0.00 1.94
2456 2994 2.070783 CCTAAAGACGCACGCCTAAAA 58.929 47.619 0.00 0.00 0.00 1.52
2457 2995 1.717194 CCTAAAGACGCACGCCTAAA 58.283 50.000 0.00 0.00 0.00 1.85
2458 2996 0.738412 GCCTAAAGACGCACGCCTAA 60.738 55.000 0.00 0.00 0.00 2.69
2459 2997 1.153706 GCCTAAAGACGCACGCCTA 60.154 57.895 0.00 0.00 0.00 3.93
2460 2998 2.434359 GCCTAAAGACGCACGCCT 60.434 61.111 0.00 0.00 0.00 5.52
2461 2999 3.849953 CGCCTAAAGACGCACGCC 61.850 66.667 0.00 0.00 0.00 5.68
2462 3000 3.067846 GACGCCTAAAGACGCACGC 62.068 63.158 0.00 0.00 0.00 5.34
2463 3001 1.443872 AGACGCCTAAAGACGCACG 60.444 57.895 0.00 0.00 0.00 5.34
2464 3002 1.956620 GCAGACGCCTAAAGACGCAC 61.957 60.000 0.00 0.00 0.00 5.34
2465 3003 1.736645 GCAGACGCCTAAAGACGCA 60.737 57.895 0.00 0.00 0.00 5.24
2466 3004 0.179145 TAGCAGACGCCTAAAGACGC 60.179 55.000 0.00 0.00 39.83 5.19
2467 3005 2.273370 TTAGCAGACGCCTAAAGACG 57.727 50.000 0.00 0.00 39.83 4.18
2468 3006 2.348971 GCTTTAGCAGACGCCTAAAGAC 59.651 50.000 21.77 13.82 39.09 3.01
2469 3007 2.618053 GCTTTAGCAGACGCCTAAAGA 58.382 47.619 21.77 0.00 39.09 2.52
2482 3020 3.003378 GTCGGGACCAATATTGCTTTAGC 59.997 47.826 10.11 0.00 42.50 3.09
2483 3021 3.247648 CGTCGGGACCAATATTGCTTTAG 59.752 47.826 10.11 0.00 0.00 1.85
2484 3022 3.199677 CGTCGGGACCAATATTGCTTTA 58.800 45.455 10.11 0.00 0.00 1.85
2485 3023 2.014128 CGTCGGGACCAATATTGCTTT 58.986 47.619 10.11 0.00 0.00 3.51
2486 3024 1.663695 CGTCGGGACCAATATTGCTT 58.336 50.000 10.11 0.00 0.00 3.91
2487 3025 0.814010 GCGTCGGGACCAATATTGCT 60.814 55.000 10.11 0.00 0.00 3.91
2488 3026 1.092921 TGCGTCGGGACCAATATTGC 61.093 55.000 10.11 0.00 0.00 3.56
2489 3027 0.655733 GTGCGTCGGGACCAATATTG 59.344 55.000 8.58 8.58 0.00 1.90
2490 3028 0.539986 AGTGCGTCGGGACCAATATT 59.460 50.000 0.00 0.00 34.61 1.28
2491 3029 1.405872 TAGTGCGTCGGGACCAATAT 58.594 50.000 0.00 0.00 34.61 1.28
2492 3030 1.184431 TTAGTGCGTCGGGACCAATA 58.816 50.000 0.00 0.00 34.61 1.90
2493 3031 0.322322 TTTAGTGCGTCGGGACCAAT 59.678 50.000 0.00 0.00 34.61 3.16
2494 3032 0.106335 TTTTAGTGCGTCGGGACCAA 59.894 50.000 0.00 0.00 34.61 3.67
2495 3033 0.322322 ATTTTAGTGCGTCGGGACCA 59.678 50.000 0.00 0.00 34.61 4.02
2496 3034 0.725117 CATTTTAGTGCGTCGGGACC 59.275 55.000 0.00 0.00 34.61 4.46
2497 3035 0.096454 GCATTTTAGTGCGTCGGGAC 59.904 55.000 0.00 0.00 35.10 4.46
2498 3036 2.462503 GCATTTTAGTGCGTCGGGA 58.537 52.632 0.00 0.00 35.10 5.14
2505 3043 4.666655 CGTGACACTGTAGCATTTTAGTGC 60.667 45.833 3.68 0.00 43.18 4.40
2506 3044 4.666655 GCGTGACACTGTAGCATTTTAGTG 60.667 45.833 3.68 0.00 44.52 2.74
2507 3045 3.432252 GCGTGACACTGTAGCATTTTAGT 59.568 43.478 3.68 0.00 0.00 2.24
2508 3046 3.679980 AGCGTGACACTGTAGCATTTTAG 59.320 43.478 3.68 0.00 0.00 1.85
2509 3047 3.659786 AGCGTGACACTGTAGCATTTTA 58.340 40.909 3.68 0.00 0.00 1.52
2510 3048 2.494059 AGCGTGACACTGTAGCATTTT 58.506 42.857 3.68 0.00 0.00 1.82
2511 3049 2.169832 AGCGTGACACTGTAGCATTT 57.830 45.000 3.68 0.00 0.00 2.32
2512 3050 3.526931 ATAGCGTGACACTGTAGCATT 57.473 42.857 3.68 0.00 0.00 3.56
2513 3051 4.649088 TTATAGCGTGACACTGTAGCAT 57.351 40.909 3.68 0.13 0.00 3.79
2514 3052 4.443913 TTTATAGCGTGACACTGTAGCA 57.556 40.909 3.68 0.00 0.00 3.49
2515 3053 5.968387 AATTTATAGCGTGACACTGTAGC 57.032 39.130 3.68 0.00 0.00 3.58
2518 3056 8.181573 CCAATAAAATTTATAGCGTGACACTGT 58.818 33.333 3.68 0.00 0.00 3.55
2519 3057 7.643764 CCCAATAAAATTTATAGCGTGACACTG 59.356 37.037 3.68 0.00 0.00 3.66
2520 3058 7.681065 GCCCAATAAAATTTATAGCGTGACACT 60.681 37.037 3.68 0.00 0.00 3.55
2521 3059 6.416750 GCCCAATAAAATTTATAGCGTGACAC 59.583 38.462 0.00 0.00 0.00 3.67
2522 3060 6.500041 GCCCAATAAAATTTATAGCGTGACA 58.500 36.000 0.00 0.00 0.00 3.58
2523 3061 5.623673 CGCCCAATAAAATTTATAGCGTGAC 59.376 40.000 20.09 4.84 36.53 3.67
2524 3062 5.753744 CGCCCAATAAAATTTATAGCGTGA 58.246 37.500 20.09 0.00 36.53 4.35
2525 3063 4.381566 GCGCCCAATAAAATTTATAGCGTG 59.618 41.667 24.72 11.42 42.75 5.34
2526 3064 4.542735 GCGCCCAATAAAATTTATAGCGT 58.457 39.130 24.72 2.16 42.75 5.07
2527 3065 3.602062 CGCGCCCAATAAAATTTATAGCG 59.398 43.478 22.25 22.25 43.58 4.26
2528 3066 4.789784 TCGCGCCCAATAAAATTTATAGC 58.210 39.130 0.00 2.68 0.00 2.97
2529 3067 6.236017 TCTCGCGCCCAATAAAATTTATAG 57.764 37.500 0.00 0.00 0.00 1.31
2530 3068 6.811253 ATCTCGCGCCCAATAAAATTTATA 57.189 33.333 0.00 0.00 0.00 0.98
2531 3069 5.705609 ATCTCGCGCCCAATAAAATTTAT 57.294 34.783 0.00 0.00 0.00 1.40
2532 3070 5.508200 AATCTCGCGCCCAATAAAATTTA 57.492 34.783 0.00 0.00 0.00 1.40
2533 3071 4.385358 AATCTCGCGCCCAATAAAATTT 57.615 36.364 0.00 0.00 0.00 1.82
2534 3072 4.385358 AAATCTCGCGCCCAATAAAATT 57.615 36.364 0.00 0.00 0.00 1.82
2535 3073 4.385358 AAAATCTCGCGCCCAATAAAAT 57.615 36.364 0.00 0.00 0.00 1.82
2536 3074 3.859411 AAAATCTCGCGCCCAATAAAA 57.141 38.095 0.00 0.00 0.00 1.52
2537 3075 3.859411 AAAAATCTCGCGCCCAATAAA 57.141 38.095 0.00 0.00 0.00 1.40
2538 3076 4.791411 GCATAAAAATCTCGCGCCCAATAA 60.791 41.667 0.00 0.00 0.00 1.40
2539 3077 3.304391 GCATAAAAATCTCGCGCCCAATA 60.304 43.478 0.00 0.00 0.00 1.90
2540 3078 2.543653 GCATAAAAATCTCGCGCCCAAT 60.544 45.455 0.00 0.00 0.00 3.16
2541 3079 1.202245 GCATAAAAATCTCGCGCCCAA 60.202 47.619 0.00 0.00 0.00 4.12
2542 3080 0.380378 GCATAAAAATCTCGCGCCCA 59.620 50.000 0.00 0.00 0.00 5.36
2543 3081 0.657368 CGCATAAAAATCTCGCGCCC 60.657 55.000 0.00 0.00 39.43 6.13
2544 3082 0.657368 CCGCATAAAAATCTCGCGCC 60.657 55.000 0.00 0.00 44.36 6.53
2545 3083 1.262166 GCCGCATAAAAATCTCGCGC 61.262 55.000 0.00 0.00 44.36 6.86
2546 3084 0.657368 GGCCGCATAAAAATCTCGCG 60.657 55.000 0.00 0.00 45.25 5.87
2547 3085 0.657368 CGGCCGCATAAAAATCTCGC 60.657 55.000 14.67 0.00 0.00 5.03
2548 3086 0.655733 ACGGCCGCATAAAAATCTCG 59.344 50.000 28.58 0.00 0.00 4.04
2549 3087 2.450160 CAACGGCCGCATAAAAATCTC 58.550 47.619 28.58 0.00 0.00 2.75
2550 3088 1.134175 CCAACGGCCGCATAAAAATCT 59.866 47.619 28.58 0.00 0.00 2.40
2551 3089 1.133407 TCCAACGGCCGCATAAAAATC 59.867 47.619 28.58 0.00 0.00 2.17
2552 3090 1.134175 CTCCAACGGCCGCATAAAAAT 59.866 47.619 28.58 0.00 0.00 1.82
2553 3091 0.523966 CTCCAACGGCCGCATAAAAA 59.476 50.000 28.58 3.30 0.00 1.94
2554 3092 0.321741 TCTCCAACGGCCGCATAAAA 60.322 50.000 28.58 4.07 0.00 1.52
2555 3093 0.107410 ATCTCCAACGGCCGCATAAA 60.107 50.000 28.58 7.17 0.00 1.40
2556 3094 0.813610 CATCTCCAACGGCCGCATAA 60.814 55.000 28.58 7.99 0.00 1.90
2557 3095 1.227527 CATCTCCAACGGCCGCATA 60.228 57.895 28.58 7.56 0.00 3.14
2558 3096 2.514592 CATCTCCAACGGCCGCAT 60.515 61.111 28.58 12.52 0.00 4.73
2561 3099 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
2572 3110 0.398381 AGTCCTCCCCTCAGAGCATC 60.398 60.000 0.00 0.00 32.17 3.91
2573 3111 0.398381 GAGTCCTCCCCTCAGAGCAT 60.398 60.000 0.00 0.00 32.17 3.79
2574 3112 1.000993 GAGTCCTCCCCTCAGAGCA 59.999 63.158 0.00 0.00 32.17 4.26
2575 3113 2.124693 CGAGTCCTCCCCTCAGAGC 61.125 68.421 0.00 0.00 32.17 4.09
2576 3114 2.124693 GCGAGTCCTCCCCTCAGAG 61.125 68.421 0.00 0.00 0.00 3.35
2577 3115 2.043852 GCGAGTCCTCCCCTCAGA 60.044 66.667 0.00 0.00 0.00 3.27
2578 3116 2.363018 TGCGAGTCCTCCCCTCAG 60.363 66.667 0.00 0.00 0.00 3.35
2579 3117 2.363018 CTGCGAGTCCTCCCCTCA 60.363 66.667 0.00 0.00 0.00 3.86
2580 3118 3.844090 GCTGCGAGTCCTCCCCTC 61.844 72.222 0.00 0.00 0.00 4.30
2584 3122 4.443266 AAGCGCTGCGAGTCCTCC 62.443 66.667 28.07 5.79 0.00 4.30
2638 3176 2.514824 GCATGACCCGGGCTCTTC 60.515 66.667 24.08 11.70 0.00 2.87
2653 3191 1.679977 GAGCAAGGGCAAGATGGCA 60.680 57.895 6.25 0.00 45.76 4.92
2669 3207 7.413219 GCATGAAATTCTTCACAAGAGAGAGAG 60.413 40.741 0.00 0.00 44.28 3.20
2670 3208 6.370994 GCATGAAATTCTTCACAAGAGAGAGA 59.629 38.462 0.00 0.00 44.28 3.10
2671 3209 6.544622 GCATGAAATTCTTCACAAGAGAGAG 58.455 40.000 0.00 0.00 44.28 3.20
2672 3210 6.492007 GCATGAAATTCTTCACAAGAGAGA 57.508 37.500 0.00 0.00 44.28 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.