Multiple sequence alignment - TraesCS3A01G253800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G253800 chr3A 100.000 3275 0 0 1 3275 474977895 474981169 0.000000e+00 6048.0
1 TraesCS3A01G253800 chr3A 85.654 237 34 0 2855 3091 474980639 474980875 1.950000e-62 250.0
2 TraesCS3A01G253800 chr3A 85.654 237 34 0 2745 2981 474980749 474980985 1.950000e-62 250.0
3 TraesCS3A01G253800 chr3A 98.374 123 1 1 1 122 70359276 70359398 7.120000e-52 215.0
4 TraesCS3A01G253800 chr3D 94.451 1766 82 10 571 2322 355994725 355996488 0.000000e+00 2704.0
5 TraesCS3A01G253800 chr3D 87.552 723 67 14 2261 2981 355996889 355997590 0.000000e+00 815.0
6 TraesCS3A01G253800 chr3D 90.995 422 36 2 2855 3275 355997354 355997774 4.740000e-158 568.0
7 TraesCS3A01G253800 chr3D 92.771 166 11 1 116 280 355994432 355994597 4.220000e-59 239.0
8 TraesCS3A01G253800 chr3D 86.614 127 17 0 2965 3091 355997354 355997480 1.230000e-29 141.0
9 TraesCS3A01G253800 chr3D 97.500 40 1 0 2301 2340 447584143 447584182 5.860000e-08 69.4
10 TraesCS3A01G253800 chr3B 94.595 1702 75 9 644 2339 457207241 457208931 0.000000e+00 2617.0
11 TraesCS3A01G253800 chr3B 85.088 570 58 12 2401 2969 457209362 457209905 1.030000e-154 556.0
12 TraesCS3A01G253800 chr3B 89.311 421 38 2 2855 3275 457209688 457210101 3.740000e-144 521.0
13 TraesCS3A01G253800 chr3B 91.176 272 24 0 301 572 582406002 582405731 1.440000e-98 370.0
14 TraesCS3A01G253800 chr3B 90.876 274 25 0 301 574 803761002 803761275 5.160000e-98 368.0
15 TraesCS3A01G253800 chr3B 89.091 165 18 0 116 280 457204319 457204483 4.280000e-49 206.0
16 TraesCS3A01G253800 chr3B 85.841 113 15 1 2965 3077 457209688 457209799 5.740000e-23 119.0
17 TraesCS3A01G253800 chr6B 91.176 272 24 0 301 572 118216784 118216513 1.440000e-98 370.0
18 TraesCS3A01G253800 chr6B 99.167 120 1 0 1 120 4195526 4195645 1.980000e-52 217.0
19 TraesCS3A01G253800 chr7D 90.357 280 26 1 301 580 42618620 42618342 1.860000e-97 366.0
20 TraesCS3A01G253800 chrUn 90.441 272 26 0 301 572 87719875 87719604 3.110000e-95 359.0
21 TraesCS3A01G253800 chr7B 90.441 272 26 0 301 572 713698734 713698463 3.110000e-95 359.0
22 TraesCS3A01G253800 chr2B 90.441 272 25 1 301 572 475611906 475611636 1.120000e-94 357.0
23 TraesCS3A01G253800 chr2B 90.146 274 26 1 301 574 550216623 550216351 4.020000e-94 355.0
24 TraesCS3A01G253800 chr2B 97.368 38 1 0 2303 2340 408095971 408095934 7.590000e-07 65.8
25 TraesCS3A01G253800 chr1B 90.146 274 27 0 301 574 403528589 403528862 1.120000e-94 357.0
26 TraesCS3A01G253800 chr6A 98.400 125 2 0 1 125 384349262 384349138 1.530000e-53 220.0
27 TraesCS3A01G253800 chr6A 98.361 122 2 0 1 122 359997640 359997519 7.120000e-52 215.0
28 TraesCS3A01G253800 chr4D 97.638 127 2 1 1 126 490142563 490142437 1.980000e-52 217.0
29 TraesCS3A01G253800 chr7A 98.361 122 2 0 1 122 40851730 40851609 7.120000e-52 215.0
30 TraesCS3A01G253800 chr7A 90.741 108 7 1 2072 2179 675135230 675135126 1.230000e-29 141.0
31 TraesCS3A01G253800 chr5A 98.361 122 2 0 1 122 379456456 379456335 7.120000e-52 215.0
32 TraesCS3A01G253800 chr5A 96.850 127 3 1 1 127 687280493 687280368 9.210000e-51 211.0
33 TraesCS3A01G253800 chr5A 100.000 30 0 0 2302 2331 647580161 647580132 4.570000e-04 56.5
34 TraesCS3A01G253800 chr4B 98.361 122 2 0 1 122 667838293 667838414 7.120000e-52 215.0
35 TraesCS3A01G253800 chr2D 92.857 56 4 0 1620 1675 591571970 591572025 7.530000e-12 82.4
36 TraesCS3A01G253800 chr2D 94.872 39 2 0 2304 2342 309945448 309945410 9.810000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G253800 chr3A 474977895 474981169 3274 False 2182.666667 6048 90.4360 1 3275 3 chr3A.!!$F2 3274
1 TraesCS3A01G253800 chr3D 355994432 355997774 3342 False 893.400000 2704 90.4766 116 3275 5 chr3D.!!$F2 3159
2 TraesCS3A01G253800 chr3B 457204319 457210101 5782 False 803.800000 2617 88.7852 116 3275 5 chr3B.!!$F2 3159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 3583 0.032952 TTTTAGCTCGTCAGTGCGGT 59.967 50.0 0.0 0.0 41.35 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2847 6358 0.035881 TCACAAGGAGCAGCTTCCTG 59.964 55.0 7.75 6.01 46.9 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.377554 GCATGCATGTGAGAGAGTGC 59.622 55.000 26.79 7.20 38.05 4.40
22 23 2.484742 TGCATGTGAGAGAGTGCATT 57.515 45.000 0.00 0.00 42.13 3.56
23 24 2.081462 TGCATGTGAGAGAGTGCATTG 58.919 47.619 0.00 0.00 42.13 2.82
24 25 2.289819 TGCATGTGAGAGAGTGCATTGA 60.290 45.455 0.00 0.00 42.13 2.57
25 26 2.352034 GCATGTGAGAGAGTGCATTGAG 59.648 50.000 0.00 0.00 37.52 3.02
26 27 3.858247 CATGTGAGAGAGTGCATTGAGA 58.142 45.455 0.00 0.00 0.00 3.27
27 28 3.589495 TGTGAGAGAGTGCATTGAGAG 57.411 47.619 0.00 0.00 0.00 3.20
28 29 2.896044 TGTGAGAGAGTGCATTGAGAGT 59.104 45.455 0.00 0.00 0.00 3.24
29 30 3.252400 GTGAGAGAGTGCATTGAGAGTG 58.748 50.000 0.00 0.00 0.00 3.51
30 31 2.233186 TGAGAGAGTGCATTGAGAGTGG 59.767 50.000 0.00 0.00 0.00 4.00
31 32 2.495270 GAGAGAGTGCATTGAGAGTGGA 59.505 50.000 0.00 0.00 0.00 4.02
32 33 2.902486 AGAGAGTGCATTGAGAGTGGAA 59.098 45.455 0.00 0.00 0.00 3.53
33 34 3.518705 AGAGAGTGCATTGAGAGTGGAAT 59.481 43.478 0.00 0.00 0.00 3.01
34 35 3.607741 AGAGTGCATTGAGAGTGGAATG 58.392 45.455 0.00 0.00 33.46 2.67
35 36 2.681848 GAGTGCATTGAGAGTGGAATGG 59.318 50.000 0.00 0.00 31.38 3.16
36 37 2.306805 AGTGCATTGAGAGTGGAATGGA 59.693 45.455 0.00 0.00 31.38 3.41
37 38 3.084039 GTGCATTGAGAGTGGAATGGAA 58.916 45.455 0.00 0.00 32.51 3.53
38 39 3.128242 GTGCATTGAGAGTGGAATGGAAG 59.872 47.826 0.00 0.00 32.51 3.46
39 40 3.009363 TGCATTGAGAGTGGAATGGAAGA 59.991 43.478 0.00 0.00 31.38 2.87
40 41 4.012374 GCATTGAGAGTGGAATGGAAGAA 58.988 43.478 0.00 0.00 31.38 2.52
41 42 4.643784 GCATTGAGAGTGGAATGGAAGAAT 59.356 41.667 0.00 0.00 31.38 2.40
42 43 5.126707 GCATTGAGAGTGGAATGGAAGAATT 59.873 40.000 0.00 0.00 31.38 2.17
43 44 6.319658 GCATTGAGAGTGGAATGGAAGAATTA 59.680 38.462 0.00 0.00 31.38 1.40
44 45 7.148018 GCATTGAGAGTGGAATGGAAGAATTAA 60.148 37.037 0.00 0.00 31.38 1.40
45 46 8.910944 CATTGAGAGTGGAATGGAAGAATTAAT 58.089 33.333 0.00 0.00 0.00 1.40
46 47 7.870509 TGAGAGTGGAATGGAAGAATTAATG 57.129 36.000 0.00 0.00 0.00 1.90
47 48 7.405292 TGAGAGTGGAATGGAAGAATTAATGT 58.595 34.615 0.00 0.00 0.00 2.71
48 49 7.337689 TGAGAGTGGAATGGAAGAATTAATGTG 59.662 37.037 0.00 0.00 0.00 3.21
49 50 7.405292 AGAGTGGAATGGAAGAATTAATGTGA 58.595 34.615 0.00 0.00 0.00 3.58
50 51 7.555554 AGAGTGGAATGGAAGAATTAATGTGAG 59.444 37.037 0.00 0.00 0.00 3.51
51 52 6.096001 AGTGGAATGGAAGAATTAATGTGAGC 59.904 38.462 0.00 0.00 0.00 4.26
52 53 5.951148 TGGAATGGAAGAATTAATGTGAGCA 59.049 36.000 0.00 0.00 0.00 4.26
53 54 6.436847 TGGAATGGAAGAATTAATGTGAGCAA 59.563 34.615 0.00 0.00 0.00 3.91
54 55 7.039152 TGGAATGGAAGAATTAATGTGAGCAAA 60.039 33.333 0.00 0.00 0.00 3.68
55 56 7.983484 GGAATGGAAGAATTAATGTGAGCAAAT 59.017 33.333 0.00 0.00 0.00 2.32
56 57 9.374838 GAATGGAAGAATTAATGTGAGCAAATT 57.625 29.630 0.00 0.00 0.00 1.82
58 59 9.807649 ATGGAAGAATTAATGTGAGCAAATTAC 57.192 29.630 0.00 0.00 0.00 1.89
59 60 9.023962 TGGAAGAATTAATGTGAGCAAATTACT 57.976 29.630 0.00 0.00 0.00 2.24
67 68 7.928307 AATGTGAGCAAATTACTATGTGTCT 57.072 32.000 0.00 0.00 0.00 3.41
68 69 7.928307 ATGTGAGCAAATTACTATGTGTCTT 57.072 32.000 0.00 0.00 0.00 3.01
69 70 7.132694 TGTGAGCAAATTACTATGTGTCTTG 57.867 36.000 0.00 0.00 0.00 3.02
70 71 6.149308 TGTGAGCAAATTACTATGTGTCTTGG 59.851 38.462 0.00 0.00 0.00 3.61
71 72 6.149474 GTGAGCAAATTACTATGTGTCTTGGT 59.851 38.462 0.00 0.00 0.00 3.67
72 73 6.371548 TGAGCAAATTACTATGTGTCTTGGTC 59.628 38.462 0.00 0.00 38.90 4.02
73 74 6.476378 AGCAAATTACTATGTGTCTTGGTCT 58.524 36.000 0.00 0.00 0.00 3.85
74 75 7.620880 AGCAAATTACTATGTGTCTTGGTCTA 58.379 34.615 0.00 0.00 0.00 2.59
75 76 8.100791 AGCAAATTACTATGTGTCTTGGTCTAA 58.899 33.333 0.00 0.00 0.00 2.10
76 77 8.391106 GCAAATTACTATGTGTCTTGGTCTAAG 58.609 37.037 0.00 0.00 37.76 2.18
77 78 9.653287 CAAATTACTATGTGTCTTGGTCTAAGA 57.347 33.333 0.00 0.00 43.01 2.10
78 79 9.877178 AAATTACTATGTGTCTTGGTCTAAGAG 57.123 33.333 0.00 0.00 45.71 2.85
79 80 8.824756 ATTACTATGTGTCTTGGTCTAAGAGA 57.175 34.615 0.00 0.00 45.71 3.10
80 81 8.645814 TTACTATGTGTCTTGGTCTAAGAGAA 57.354 34.615 0.00 0.00 45.71 2.87
81 82 7.164230 ACTATGTGTCTTGGTCTAAGAGAAG 57.836 40.000 0.00 0.00 45.71 2.85
82 83 6.722129 ACTATGTGTCTTGGTCTAAGAGAAGT 59.278 38.462 0.00 0.00 45.71 3.01
83 84 5.871396 TGTGTCTTGGTCTAAGAGAAGTT 57.129 39.130 0.00 0.00 45.71 2.66
84 85 5.601662 TGTGTCTTGGTCTAAGAGAAGTTG 58.398 41.667 0.00 0.00 45.71 3.16
85 86 5.128827 TGTGTCTTGGTCTAAGAGAAGTTGT 59.871 40.000 0.00 0.00 45.71 3.32
86 87 5.692654 GTGTCTTGGTCTAAGAGAAGTTGTC 59.307 44.000 0.00 0.00 45.71 3.18
87 88 5.598830 TGTCTTGGTCTAAGAGAAGTTGTCT 59.401 40.000 0.00 0.00 45.71 3.41
88 89 6.098409 TGTCTTGGTCTAAGAGAAGTTGTCTT 59.902 38.462 18.27 18.27 45.71 3.01
89 90 6.987404 GTCTTGGTCTAAGAGAAGTTGTCTTT 59.013 38.462 19.27 5.49 45.71 2.52
90 91 8.142551 GTCTTGGTCTAAGAGAAGTTGTCTTTA 58.857 37.037 19.27 6.94 45.71 1.85
91 92 8.361139 TCTTGGTCTAAGAGAAGTTGTCTTTAG 58.639 37.037 19.27 13.96 40.43 1.85
92 93 6.994221 TGGTCTAAGAGAAGTTGTCTTTAGG 58.006 40.000 19.27 10.83 36.41 2.69
93 94 5.870433 GGTCTAAGAGAAGTTGTCTTTAGGC 59.130 44.000 19.27 14.77 36.41 3.93
94 95 5.870433 GTCTAAGAGAAGTTGTCTTTAGGCC 59.130 44.000 19.27 0.00 36.41 5.19
95 96 4.984146 AAGAGAAGTTGTCTTTAGGCCT 57.016 40.909 11.78 11.78 36.41 5.19
96 97 6.952358 TCTAAGAGAAGTTGTCTTTAGGCCTA 59.048 38.462 19.27 8.91 36.41 3.93
97 98 6.435292 AAGAGAAGTTGTCTTTAGGCCTAA 57.565 37.500 21.68 21.68 36.41 2.69
98 99 6.628644 AGAGAAGTTGTCTTTAGGCCTAAT 57.371 37.500 25.70 8.38 36.41 1.73
99 100 7.735326 AGAGAAGTTGTCTTTAGGCCTAATA 57.265 36.000 25.70 14.28 36.41 0.98
100 101 8.147244 AGAGAAGTTGTCTTTAGGCCTAATAA 57.853 34.615 25.70 13.92 36.41 1.40
101 102 8.603304 AGAGAAGTTGTCTTTAGGCCTAATAAA 58.397 33.333 25.70 12.32 36.41 1.40
102 103 8.563123 AGAAGTTGTCTTTAGGCCTAATAAAC 57.437 34.615 25.70 22.86 29.66 2.01
103 104 7.610692 AGAAGTTGTCTTTAGGCCTAATAAACC 59.389 37.037 25.70 12.16 29.66 3.27
104 105 6.185511 AGTTGTCTTTAGGCCTAATAAACCC 58.814 40.000 25.70 15.18 0.00 4.11
105 106 4.773013 TGTCTTTAGGCCTAATAAACCCG 58.227 43.478 25.70 8.69 0.00 5.28
106 107 4.132336 GTCTTTAGGCCTAATAAACCCGG 58.868 47.826 25.70 8.87 0.00 5.73
107 108 4.039339 TCTTTAGGCCTAATAAACCCGGA 58.961 43.478 25.70 6.80 0.00 5.14
108 109 3.843893 TTAGGCCTAATAAACCCGGAC 57.156 47.619 21.68 0.00 0.00 4.79
109 110 0.466963 AGGCCTAATAAACCCGGACG 59.533 55.000 1.29 0.00 0.00 4.79
110 111 0.533531 GGCCTAATAAACCCGGACGG 60.534 60.000 0.73 3.25 37.81 4.79
111 112 0.465287 GCCTAATAAACCCGGACGGA 59.535 55.000 13.13 0.00 37.50 4.69
112 113 1.539712 GCCTAATAAACCCGGACGGAG 60.540 57.143 13.13 5.04 37.50 4.63
113 114 1.069668 CCTAATAAACCCGGACGGAGG 59.930 57.143 13.13 5.18 37.50 4.30
125 126 2.748532 CGGACGGAGGGAGTATATCTTC 59.251 54.545 0.00 0.00 0.00 2.87
171 172 5.868258 TGTGTACAGTGTTCGAACAACTTTA 59.132 36.000 31.20 21.91 41.21 1.85
175 176 5.633927 ACAGTGTTCGAACAACTTTAAACC 58.366 37.500 31.20 15.83 41.21 3.27
204 205 2.813754 GCTGTGAATGTGAAGCAGGTTA 59.186 45.455 0.00 0.00 35.69 2.85
221 222 1.995484 GTTAGGCTACCGTCCGTTTTC 59.005 52.381 0.00 0.00 0.00 2.29
226 227 1.004679 TACCGTCCGTTTTCCAGCC 60.005 57.895 0.00 0.00 0.00 4.85
227 228 1.756408 TACCGTCCGTTTTCCAGCCA 61.756 55.000 0.00 0.00 0.00 4.75
297 456 4.695928 GGATTCTAACTAAATGGGGCGATC 59.304 45.833 0.00 0.00 0.00 3.69
298 457 3.380479 TCTAACTAAATGGGGCGATCG 57.620 47.619 11.69 11.69 0.00 3.69
299 458 2.960384 TCTAACTAAATGGGGCGATCGA 59.040 45.455 21.57 0.00 0.00 3.59
300 459 1.949465 AACTAAATGGGGCGATCGAC 58.051 50.000 21.57 18.00 0.00 4.20
301 460 1.120530 ACTAAATGGGGCGATCGACT 58.879 50.000 22.46 2.34 0.00 4.18
302 461 1.202533 ACTAAATGGGGCGATCGACTG 60.203 52.381 22.46 5.24 0.00 3.51
303 462 0.105964 TAAATGGGGCGATCGACTGG 59.894 55.000 22.46 0.00 0.00 4.00
304 463 1.910580 AAATGGGGCGATCGACTGGT 61.911 55.000 22.46 3.65 0.00 4.00
305 464 1.910580 AATGGGGCGATCGACTGGTT 61.911 55.000 22.46 10.03 0.00 3.67
306 465 2.511600 GGGGCGATCGACTGGTTG 60.512 66.667 22.46 0.00 0.00 3.77
307 466 2.264794 GGGCGATCGACTGGTTGT 59.735 61.111 22.46 0.00 0.00 3.32
308 467 1.514087 GGGCGATCGACTGGTTGTA 59.486 57.895 22.46 0.00 0.00 2.41
309 468 0.108520 GGGCGATCGACTGGTTGTAA 60.109 55.000 22.46 0.00 0.00 2.41
310 469 1.472728 GGGCGATCGACTGGTTGTAAT 60.473 52.381 22.46 0.00 0.00 1.89
311 470 1.593006 GGCGATCGACTGGTTGTAATG 59.407 52.381 21.57 0.00 0.00 1.90
312 471 2.536365 GCGATCGACTGGTTGTAATGA 58.464 47.619 21.57 0.00 0.00 2.57
313 472 2.927477 GCGATCGACTGGTTGTAATGAA 59.073 45.455 21.57 0.00 0.00 2.57
314 473 3.000322 GCGATCGACTGGTTGTAATGAAG 60.000 47.826 21.57 0.00 0.00 3.02
315 474 4.421058 CGATCGACTGGTTGTAATGAAGA 58.579 43.478 10.26 0.00 0.00 2.87
316 475 4.500837 CGATCGACTGGTTGTAATGAAGAG 59.499 45.833 10.26 0.00 0.00 2.85
317 476 3.585862 TCGACTGGTTGTAATGAAGAGC 58.414 45.455 0.00 0.00 0.00 4.09
318 477 3.006430 TCGACTGGTTGTAATGAAGAGCA 59.994 43.478 0.00 0.00 0.00 4.26
319 478 3.935203 CGACTGGTTGTAATGAAGAGCAT 59.065 43.478 0.00 0.00 39.43 3.79
320 479 4.033358 CGACTGGTTGTAATGAAGAGCATC 59.967 45.833 0.00 0.00 35.78 3.91
321 480 4.910195 ACTGGTTGTAATGAAGAGCATCA 58.090 39.130 0.00 0.00 37.82 3.07
322 481 5.503927 ACTGGTTGTAATGAAGAGCATCAT 58.496 37.500 0.00 0.00 41.74 2.45
323 482 6.653020 ACTGGTTGTAATGAAGAGCATCATA 58.347 36.000 0.82 0.00 39.08 2.15
324 483 7.285566 ACTGGTTGTAATGAAGAGCATCATAT 58.714 34.615 0.82 0.00 39.08 1.78
325 484 8.432013 ACTGGTTGTAATGAAGAGCATCATATA 58.568 33.333 0.82 0.00 39.08 0.86
326 485 8.607441 TGGTTGTAATGAAGAGCATCATATAC 57.393 34.615 0.82 6.42 39.08 1.47
327 486 8.432013 TGGTTGTAATGAAGAGCATCATATACT 58.568 33.333 0.82 0.00 39.08 2.12
328 487 9.929180 GGTTGTAATGAAGAGCATCATATACTA 57.071 33.333 0.82 2.13 39.08 1.82
337 496 9.462174 GAAGAGCATCATATACTAGTATCATGC 57.538 37.037 27.79 27.79 37.82 4.06
338 497 8.530804 AGAGCATCATATACTAGTATCATGCA 57.469 34.615 31.73 16.14 36.58 3.96
339 498 9.145442 AGAGCATCATATACTAGTATCATGCAT 57.855 33.333 31.73 24.24 36.58 3.96
342 501 9.636879 GCATCATATACTAGTATCATGCATAGG 57.363 37.037 28.86 13.51 35.48 2.57
367 526 9.682465 GGATACTAGTGTATGATACTACATCCA 57.318 37.037 5.39 0.00 39.29 3.41
374 533 8.815912 AGTGTATGATACTACATCCATAATGCA 58.184 33.333 4.03 0.00 39.12 3.96
375 534 9.435688 GTGTATGATACTACATCCATAATGCAA 57.564 33.333 4.03 0.00 39.12 4.08
432 591 6.875948 TTACTAACATGCATGACACAAAGT 57.124 33.333 32.75 23.07 0.00 2.66
433 592 7.971183 TTACTAACATGCATGACACAAAGTA 57.029 32.000 32.75 22.22 0.00 2.24
434 593 6.486253 ACTAACATGCATGACACAAAGTAG 57.514 37.500 32.75 18.73 0.00 2.57
435 594 3.837213 ACATGCATGACACAAAGTAGC 57.163 42.857 32.75 0.00 0.00 3.58
436 595 3.148412 ACATGCATGACACAAAGTAGCA 58.852 40.909 32.75 0.00 37.13 3.49
437 596 3.058016 ACATGCATGACACAAAGTAGCAC 60.058 43.478 32.75 0.00 36.06 4.40
438 597 2.570135 TGCATGACACAAAGTAGCACA 58.430 42.857 0.00 0.00 30.65 4.57
439 598 3.148412 TGCATGACACAAAGTAGCACAT 58.852 40.909 0.00 0.00 30.65 3.21
440 599 3.189080 TGCATGACACAAAGTAGCACATC 59.811 43.478 0.00 0.00 30.65 3.06
441 600 3.189080 GCATGACACAAAGTAGCACATCA 59.811 43.478 0.00 0.00 0.00 3.07
442 601 4.142534 GCATGACACAAAGTAGCACATCAT 60.143 41.667 0.00 0.00 0.00 2.45
443 602 5.620654 GCATGACACAAAGTAGCACATCATT 60.621 40.000 0.00 0.00 0.00 2.57
444 603 6.384224 CATGACACAAAGTAGCACATCATTT 58.616 36.000 0.00 0.00 0.00 2.32
445 604 7.529158 CATGACACAAAGTAGCACATCATTTA 58.471 34.615 0.00 0.00 0.00 1.40
446 605 7.503521 TGACACAAAGTAGCACATCATTTAA 57.496 32.000 0.00 0.00 0.00 1.52
447 606 8.109705 TGACACAAAGTAGCACATCATTTAAT 57.890 30.769 0.00 0.00 0.00 1.40
448 607 9.225436 TGACACAAAGTAGCACATCATTTAATA 57.775 29.630 0.00 0.00 0.00 0.98
485 644 9.788889 TCATGATATGATACTGAAGCATCTTTT 57.211 29.630 0.00 0.00 33.59 2.27
534 693 9.282247 CTCATCAAAATTACTTAGTTGACATGC 57.718 33.333 0.00 0.00 33.09 4.06
535 694 8.791675 TCATCAAAATTACTTAGTTGACATGCA 58.208 29.630 0.00 0.00 33.09 3.96
536 695 9.577110 CATCAAAATTACTTAGTTGACATGCAT 57.423 29.630 0.00 0.00 33.09 3.96
537 696 8.969121 TCAAAATTACTTAGTTGACATGCATG 57.031 30.769 25.09 25.09 0.00 4.06
538 697 8.791675 TCAAAATTACTTAGTTGACATGCATGA 58.208 29.630 32.75 9.00 0.00 3.07
539 698 9.577110 CAAAATTACTTAGTTGACATGCATGAT 57.423 29.630 32.75 16.80 0.00 2.45
541 700 9.793252 AAATTACTTAGTTGACATGCATGATTC 57.207 29.630 32.75 20.43 0.00 2.52
542 701 8.743085 ATTACTTAGTTGACATGCATGATTCT 57.257 30.769 32.75 22.97 0.00 2.40
543 702 9.836864 ATTACTTAGTTGACATGCATGATTCTA 57.163 29.630 32.75 22.09 0.00 2.10
544 703 7.545362 ACTTAGTTGACATGCATGATTCTAC 57.455 36.000 32.75 23.99 0.00 2.59
545 704 6.540189 ACTTAGTTGACATGCATGATTCTACC 59.460 38.462 32.75 12.77 0.00 3.18
546 705 5.108187 AGTTGACATGCATGATTCTACCT 57.892 39.130 32.75 14.63 0.00 3.08
547 706 6.239217 AGTTGACATGCATGATTCTACCTA 57.761 37.500 32.75 2.14 0.00 3.08
548 707 6.835174 AGTTGACATGCATGATTCTACCTAT 58.165 36.000 32.75 6.24 0.00 2.57
549 708 6.709397 AGTTGACATGCATGATTCTACCTATG 59.291 38.462 32.75 3.42 0.00 2.23
550 709 6.423776 TGACATGCATGATTCTACCTATGA 57.576 37.500 32.75 0.00 0.00 2.15
551 710 7.012661 TGACATGCATGATTCTACCTATGAT 57.987 36.000 32.75 4.97 0.00 2.45
552 711 8.137745 TGACATGCATGATTCTACCTATGATA 57.862 34.615 32.75 0.00 0.00 2.15
553 712 8.037166 TGACATGCATGATTCTACCTATGATAC 58.963 37.037 32.75 1.74 0.00 2.24
554 713 8.143673 ACATGCATGATTCTACCTATGATACT 57.856 34.615 32.75 0.57 0.00 2.12
555 714 9.259832 ACATGCATGATTCTACCTATGATACTA 57.740 33.333 32.75 0.00 0.00 1.82
558 717 9.479549 TGCATGATTCTACCTATGATACTATCA 57.520 33.333 0.00 1.10 44.55 2.15
569 728 4.188247 TGATACTATCATTACGGGCAGC 57.812 45.455 0.00 0.00 33.59 5.25
590 749 0.248012 TTATCAAAGGCGAGCCGACA 59.752 50.000 8.63 0.00 37.34 4.35
607 766 2.665185 AAGACGCACTTGGCCGTC 60.665 61.111 0.00 5.15 42.43 4.79
623 782 1.445582 GTCCCATTCGCGAGACGTT 60.446 57.895 9.59 0.00 44.19 3.99
625 784 0.179156 TCCCATTCGCGAGACGTTAC 60.179 55.000 9.59 0.00 44.19 2.50
635 794 2.404361 GCGAGACGTTACTCACAAAGTC 59.596 50.000 5.26 0.00 39.55 3.01
637 796 3.421231 CGAGACGTTACTCACAAAGTCAC 59.579 47.826 5.26 0.00 38.77 3.67
731 3400 0.749454 GATGGCTTGGCTCCGTTCAT 60.749 55.000 0.00 0.00 0.00 2.57
898 3567 1.549170 ACACTCCGCCTCGTCTATTTT 59.451 47.619 0.00 0.00 0.00 1.82
914 3583 0.032952 TTTTAGCTCGTCAGTGCGGT 59.967 50.000 0.00 0.00 41.35 5.68
928 3597 1.719709 GCGGTTGCGGATCTAAACC 59.280 57.895 12.15 12.15 40.02 3.27
934 3603 3.597162 CGGATCTAAACCGCGTCG 58.403 61.111 4.92 0.00 43.74 5.12
937 3606 1.751552 GGATCTAAACCGCGTCGTAG 58.248 55.000 4.92 3.01 0.00 3.51
938 3607 1.598924 GGATCTAAACCGCGTCGTAGG 60.599 57.143 4.92 7.23 0.00 3.18
939 3608 1.331756 GATCTAAACCGCGTCGTAGGA 59.668 52.381 4.92 0.00 0.00 2.94
940 3609 0.447801 TCTAAACCGCGTCGTAGGAC 59.552 55.000 4.92 5.47 39.89 3.85
941 3610 0.449388 CTAAACCGCGTCGTAGGACT 59.551 55.000 13.31 4.89 41.16 3.85
942 3611 1.665679 CTAAACCGCGTCGTAGGACTA 59.334 52.381 13.31 5.61 41.16 2.59
943 3612 0.449388 AAACCGCGTCGTAGGACTAG 59.551 55.000 13.31 7.00 41.16 2.57
944 3613 1.986575 AACCGCGTCGTAGGACTAGC 61.987 60.000 13.31 9.20 41.16 3.42
946 3615 2.327244 GCGTCGTAGGACTAGCGG 59.673 66.667 13.31 0.00 41.16 5.52
947 3616 3.020627 CGTCGTAGGACTAGCGGG 58.979 66.667 13.31 0.00 41.16 6.13
950 3619 0.179045 GTCGTAGGACTAGCGGGGTA 60.179 60.000 8.31 0.00 40.15 3.69
952 3621 1.513836 CGTAGGACTAGCGGGGTAGC 61.514 65.000 4.90 0.00 37.41 3.58
980 3651 4.007940 CCGTTTGTCGTGCGTGGG 62.008 66.667 0.00 0.00 37.94 4.61
1054 3729 3.798650 CGCGGCGCCATCAAGAAA 61.799 61.111 28.98 0.00 0.00 2.52
1596 4271 2.124278 GAGGGCGGGAATTGGACC 60.124 66.667 0.00 0.00 0.00 4.46
1605 4280 2.033448 AATTGGACCGCCTGCGAA 59.967 55.556 13.94 0.00 42.83 4.70
2049 4724 3.406682 CGGAGGGTACGTGTACAAC 57.593 57.895 11.89 4.60 37.78 3.32
2193 4868 2.583593 GTCATCCTCGCGTGCTCC 60.584 66.667 5.77 0.00 0.00 4.70
2259 4934 4.722855 GGCCCACAACGTGCATGC 62.723 66.667 11.82 11.82 31.34 4.06
2368 5545 5.890985 TCAAGTTTCAAGAATCTCCAAACCA 59.109 36.000 11.30 0.00 0.00 3.67
2508 6019 3.218453 TCAATCAACAACCATCAACCGT 58.782 40.909 0.00 0.00 0.00 4.83
2528 6039 3.807622 CGTTGTTGTGAGCTTTTCTCCTA 59.192 43.478 0.00 0.00 41.18 2.94
2536 6047 5.179368 TGTGAGCTTTTCTCCTAATGAAACG 59.821 40.000 0.00 0.00 41.18 3.60
2542 6053 6.915843 GCTTTTCTCCTAATGAAACGAAACAA 59.084 34.615 0.00 0.00 33.77 2.83
2543 6054 7.096599 GCTTTTCTCCTAATGAAACGAAACAAC 60.097 37.037 0.00 0.00 33.77 3.32
2546 6057 6.001460 TCTCCTAATGAAACGAAACAACCAT 58.999 36.000 0.00 0.00 0.00 3.55
2548 6059 5.765677 TCCTAATGAAACGAAACAACCATCA 59.234 36.000 0.00 0.00 0.00 3.07
2549 6060 6.263392 TCCTAATGAAACGAAACAACCATCAA 59.737 34.615 0.00 0.00 0.00 2.57
2550 6061 6.362283 CCTAATGAAACGAAACAACCATCAAC 59.638 38.462 0.00 0.00 0.00 3.18
2551 6062 4.035278 TGAAACGAAACAACCATCAACC 57.965 40.909 0.00 0.00 0.00 3.77
2552 6063 3.444034 TGAAACGAAACAACCATCAACCA 59.556 39.130 0.00 0.00 0.00 3.67
2553 6064 3.430333 AACGAAACAACCATCAACCAC 57.570 42.857 0.00 0.00 0.00 4.16
2554 6065 1.679153 ACGAAACAACCATCAACCACC 59.321 47.619 0.00 0.00 0.00 4.61
2555 6066 1.953686 CGAAACAACCATCAACCACCT 59.046 47.619 0.00 0.00 0.00 4.00
2556 6067 2.031157 CGAAACAACCATCAACCACCTC 60.031 50.000 0.00 0.00 0.00 3.85
2557 6068 3.222603 GAAACAACCATCAACCACCTCT 58.777 45.455 0.00 0.00 0.00 3.69
2558 6069 3.312736 AACAACCATCAACCACCTCTT 57.687 42.857 0.00 0.00 0.00 2.85
2559 6070 2.586425 ACAACCATCAACCACCTCTTG 58.414 47.619 0.00 0.00 0.00 3.02
2567 6078 4.577152 CCACCTCTTGGCACACAA 57.423 55.556 0.00 0.00 39.07 3.33
2568 6079 2.032981 CCACCTCTTGGCACACAAC 58.967 57.895 0.00 0.00 39.07 3.32
2648 6159 2.046604 TCTTCCTCTCGTCGCCGA 60.047 61.111 0.00 0.00 41.73 5.54
2666 6177 2.997315 CTGTCAGCACCTCCGGGA 60.997 66.667 0.00 0.00 36.25 5.14
2730 6241 2.124996 CACTCCCCCTCTTCCCCA 59.875 66.667 0.00 0.00 0.00 4.96
2742 6253 0.256752 CTTCCCCAGGTGATCATGCA 59.743 55.000 0.00 0.00 0.00 3.96
2752 6263 2.490903 GGTGATCATGCAACTGCTTCTT 59.509 45.455 0.00 0.00 42.66 2.52
2762 6273 3.120269 GCAACTGCTTCTTGTGAGATCTG 60.120 47.826 0.00 0.00 38.21 2.90
2763 6274 2.697654 ACTGCTTCTTGTGAGATCTGC 58.302 47.619 0.00 0.00 0.00 4.26
2764 6275 2.038164 ACTGCTTCTTGTGAGATCTGCA 59.962 45.455 0.00 0.00 34.34 4.41
2765 6276 2.415857 CTGCTTCTTGTGAGATCTGCAC 59.584 50.000 0.00 9.05 33.04 4.57
2766 6277 1.392853 GCTTCTTGTGAGATCTGCACG 59.607 52.381 0.00 0.00 39.07 5.34
2767 6278 1.998315 CTTCTTGTGAGATCTGCACGG 59.002 52.381 0.00 5.98 39.07 4.94
2768 6279 0.390340 TCTTGTGAGATCTGCACGGC 60.390 55.000 0.00 0.00 39.07 5.68
2769 6280 0.390866 CTTGTGAGATCTGCACGGCT 60.391 55.000 0.00 0.00 39.07 5.52
2770 6281 0.390340 TTGTGAGATCTGCACGGCTC 60.390 55.000 0.00 0.00 39.07 4.70
2771 6282 1.520342 GTGAGATCTGCACGGCTCC 60.520 63.158 0.00 0.00 0.00 4.70
2772 6283 2.279120 GAGATCTGCACGGCTCCG 60.279 66.667 0.00 6.79 46.03 4.63
2773 6284 4.521062 AGATCTGCACGGCTCCGC 62.521 66.667 8.41 0.00 44.19 5.54
2774 6285 4.521062 GATCTGCACGGCTCCGCT 62.521 66.667 8.41 0.00 44.19 5.52
2775 6286 3.138930 GATCTGCACGGCTCCGCTA 62.139 63.158 8.41 0.00 44.19 4.26
2776 6287 2.427540 GATCTGCACGGCTCCGCTAT 62.428 60.000 8.41 0.00 44.19 2.97
2777 6288 2.427540 ATCTGCACGGCTCCGCTATC 62.428 60.000 8.41 0.00 44.19 2.08
2778 6289 4.569023 TGCACGGCTCCGCTATCG 62.569 66.667 8.41 0.00 44.19 2.92
2779 6290 4.570663 GCACGGCTCCGCTATCGT 62.571 66.667 8.41 0.00 44.19 3.73
2780 6291 2.353607 CACGGCTCCGCTATCGTC 60.354 66.667 8.41 0.00 44.19 4.20
2781 6292 3.593794 ACGGCTCCGCTATCGTCC 61.594 66.667 8.41 0.00 44.19 4.79
2782 6293 3.592814 CGGCTCCGCTATCGTCCA 61.593 66.667 0.00 0.00 0.00 4.02
2783 6294 2.812499 GGCTCCGCTATCGTCCAA 59.188 61.111 0.00 0.00 0.00 3.53
2784 6295 1.591863 GGCTCCGCTATCGTCCAAC 60.592 63.158 0.00 0.00 0.00 3.77
2785 6296 1.944676 GCTCCGCTATCGTCCAACG 60.945 63.158 0.00 0.00 44.19 4.10
2786 6297 1.944676 CTCCGCTATCGTCCAACGC 60.945 63.158 0.00 0.00 42.21 4.84
2787 6298 2.104331 CCGCTATCGTCCAACGCT 59.896 61.111 0.00 0.00 42.21 5.07
2788 6299 1.944676 CCGCTATCGTCCAACGCTC 60.945 63.158 0.00 0.00 42.21 5.03
2789 6300 1.944676 CGCTATCGTCCAACGCTCC 60.945 63.158 0.00 0.00 42.21 4.70
2790 6301 1.141019 GCTATCGTCCAACGCTCCA 59.859 57.895 0.00 0.00 42.21 3.86
2791 6302 1.146358 GCTATCGTCCAACGCTCCAC 61.146 60.000 0.00 0.00 42.21 4.02
2792 6303 0.456221 CTATCGTCCAACGCTCCACT 59.544 55.000 0.00 0.00 42.21 4.00
2793 6304 1.674441 CTATCGTCCAACGCTCCACTA 59.326 52.381 0.00 0.00 42.21 2.74
2794 6305 0.892755 ATCGTCCAACGCTCCACTAA 59.107 50.000 0.00 0.00 42.21 2.24
2795 6306 0.892755 TCGTCCAACGCTCCACTAAT 59.107 50.000 0.00 0.00 42.21 1.73
2796 6307 0.999406 CGTCCAACGCTCCACTAATG 59.001 55.000 0.00 0.00 33.65 1.90
2797 6308 0.727398 GTCCAACGCTCCACTAATGC 59.273 55.000 0.00 0.00 0.00 3.56
2798 6309 0.613260 TCCAACGCTCCACTAATGCT 59.387 50.000 0.00 0.00 0.00 3.79
2799 6310 1.009829 CCAACGCTCCACTAATGCTC 58.990 55.000 0.00 0.00 0.00 4.26
2800 6311 0.647410 CAACGCTCCACTAATGCTCG 59.353 55.000 0.00 0.00 0.00 5.03
2801 6312 0.530744 AACGCTCCACTAATGCTCGA 59.469 50.000 0.00 0.00 0.00 4.04
2802 6313 0.747255 ACGCTCCACTAATGCTCGAT 59.253 50.000 0.00 0.00 0.00 3.59
2803 6314 1.269309 ACGCTCCACTAATGCTCGATC 60.269 52.381 0.00 0.00 0.00 3.69
2804 6315 1.789506 GCTCCACTAATGCTCGATCC 58.210 55.000 0.00 0.00 0.00 3.36
2805 6316 1.342819 GCTCCACTAATGCTCGATCCT 59.657 52.381 0.00 0.00 0.00 3.24
2806 6317 2.224161 GCTCCACTAATGCTCGATCCTT 60.224 50.000 0.00 0.00 0.00 3.36
2807 6318 3.648009 CTCCACTAATGCTCGATCCTTC 58.352 50.000 0.00 0.00 0.00 3.46
2808 6319 3.300388 TCCACTAATGCTCGATCCTTCT 58.700 45.455 0.00 0.00 0.00 2.85
2809 6320 3.706594 TCCACTAATGCTCGATCCTTCTT 59.293 43.478 0.00 0.00 0.00 2.52
2810 6321 3.806521 CCACTAATGCTCGATCCTTCTTG 59.193 47.826 0.00 0.00 0.00 3.02
2811 6322 3.806521 CACTAATGCTCGATCCTTCTTGG 59.193 47.826 0.00 0.00 37.10 3.61
2823 6334 4.387026 TCCTTCTTGGATGTGATTGGTT 57.613 40.909 0.00 0.00 40.56 3.67
2824 6335 4.081406 TCCTTCTTGGATGTGATTGGTTG 58.919 43.478 0.00 0.00 40.56 3.77
2825 6336 3.194116 CCTTCTTGGATGTGATTGGTTGG 59.806 47.826 0.00 0.00 38.35 3.77
2826 6337 2.170166 TCTTGGATGTGATTGGTTGGC 58.830 47.619 0.00 0.00 0.00 4.52
2827 6338 2.173519 CTTGGATGTGATTGGTTGGCT 58.826 47.619 0.00 0.00 0.00 4.75
2828 6339 3.010027 TCTTGGATGTGATTGGTTGGCTA 59.990 43.478 0.00 0.00 0.00 3.93
2829 6340 2.722094 TGGATGTGATTGGTTGGCTAC 58.278 47.619 0.00 0.00 0.00 3.58
2830 6341 2.308570 TGGATGTGATTGGTTGGCTACT 59.691 45.455 0.00 0.00 0.00 2.57
2831 6342 3.245229 TGGATGTGATTGGTTGGCTACTT 60.245 43.478 0.00 0.00 0.00 2.24
2832 6343 3.378427 GGATGTGATTGGTTGGCTACTTC 59.622 47.826 0.00 0.00 0.00 3.01
2833 6344 3.788227 TGTGATTGGTTGGCTACTTCT 57.212 42.857 0.00 0.00 0.00 2.85
2834 6345 3.674997 TGTGATTGGTTGGCTACTTCTC 58.325 45.455 0.00 0.00 0.00 2.87
2835 6346 2.673368 GTGATTGGTTGGCTACTTCTCG 59.327 50.000 0.00 0.00 0.00 4.04
2836 6347 2.301870 TGATTGGTTGGCTACTTCTCGT 59.698 45.455 0.00 0.00 0.00 4.18
2837 6348 2.163818 TTGGTTGGCTACTTCTCGTG 57.836 50.000 0.00 0.00 0.00 4.35
2838 6349 1.334160 TGGTTGGCTACTTCTCGTGA 58.666 50.000 0.00 0.00 0.00 4.35
2839 6350 1.272490 TGGTTGGCTACTTCTCGTGAG 59.728 52.381 0.00 0.00 0.00 3.51
2840 6351 1.544691 GGTTGGCTACTTCTCGTGAGA 59.455 52.381 0.00 0.00 39.12 3.27
2841 6352 2.166664 GGTTGGCTACTTCTCGTGAGAT 59.833 50.000 0.00 0.00 40.84 2.75
2842 6353 3.440228 GTTGGCTACTTCTCGTGAGATC 58.560 50.000 0.00 0.00 40.84 2.75
2843 6354 2.025155 TGGCTACTTCTCGTGAGATCC 58.975 52.381 0.00 0.00 40.84 3.36
2844 6355 1.002251 GGCTACTTCTCGTGAGATCCG 60.002 57.143 0.00 0.00 40.84 4.18
2845 6356 1.671845 GCTACTTCTCGTGAGATCCGT 59.328 52.381 0.00 2.04 40.84 4.69
2846 6357 2.286536 GCTACTTCTCGTGAGATCCGTC 60.287 54.545 0.00 0.00 40.84 4.79
2847 6358 1.096416 ACTTCTCGTGAGATCCGTCC 58.904 55.000 0.00 0.00 40.84 4.79
2848 6359 1.095600 CTTCTCGTGAGATCCGTCCA 58.904 55.000 0.00 0.00 40.84 4.02
2849 6360 1.064803 CTTCTCGTGAGATCCGTCCAG 59.935 57.143 0.00 0.00 40.84 3.86
2850 6361 0.748367 TCTCGTGAGATCCGTCCAGG 60.748 60.000 0.00 0.00 40.84 4.45
2859 6370 2.125350 CCGTCCAGGAAGCTGCTC 60.125 66.667 1.00 0.00 45.00 4.26
2860 6371 2.125350 CGTCCAGGAAGCTGCTCC 60.125 66.667 1.00 6.32 35.51 4.70
2862 6373 1.682257 GTCCAGGAAGCTGCTCCTT 59.318 57.895 15.16 0.00 43.76 3.36
2863 6374 0.676151 GTCCAGGAAGCTGCTCCTTG 60.676 60.000 15.16 12.84 43.76 3.61
2864 6375 1.130054 TCCAGGAAGCTGCTCCTTGT 61.130 55.000 15.16 0.00 43.76 3.16
2865 6376 0.959372 CCAGGAAGCTGCTCCTTGTG 60.959 60.000 15.16 7.87 43.76 3.33
2866 6377 0.035881 CAGGAAGCTGCTCCTTGTGA 59.964 55.000 15.16 0.00 43.76 3.58
2867 6378 0.324285 AGGAAGCTGCTCCTTGTGAG 59.676 55.000 1.00 0.00 43.76 3.51
2868 6379 0.322975 GGAAGCTGCTCCTTGTGAGA 59.677 55.000 1.00 0.00 44.42 3.27
2869 6380 1.065564 GGAAGCTGCTCCTTGTGAGAT 60.066 52.381 1.00 0.00 44.42 2.75
2870 6381 2.278854 GAAGCTGCTCCTTGTGAGATC 58.721 52.381 1.00 0.00 44.42 2.75
2871 6382 0.540923 AGCTGCTCCTTGTGAGATCC 59.459 55.000 0.00 0.00 44.42 3.36
2882 6393 3.838271 GAGATCCGTGCGGCTCCA 61.838 66.667 10.36 0.00 31.23 3.86
2883 6394 3.157217 GAGATCCGTGCGGCTCCAT 62.157 63.158 10.36 0.00 31.23 3.41
2907 6418 1.398390 CGTTCAAGGCTCCACTAATGC 59.602 52.381 0.00 0.00 0.00 3.56
2908 6419 1.745653 GTTCAAGGCTCCACTAATGCC 59.254 52.381 0.00 0.00 46.42 4.40
2938 6449 3.010027 TCTTGGATGTGATTGGTTGGCTA 59.990 43.478 0.00 0.00 0.00 3.93
2941 6452 2.684881 GGATGTGATTGGTTGGCTACTG 59.315 50.000 0.00 0.00 0.00 2.74
2972 6483 2.932194 TCCAGGCAGCTGCTCCTT 60.932 61.111 35.82 17.61 41.70 3.36
3023 6534 5.271598 TCAAGGCTCCAATAATGTTGGATT 58.728 37.500 11.86 1.45 46.47 3.01
3032 6543 5.069516 CCAATAATGTTGGATTCTTCCTGGG 59.930 44.000 2.30 0.00 43.07 4.45
3044 6555 2.303022 TCTTCCTGGGTGTGATTGTCTC 59.697 50.000 0.00 0.00 0.00 3.36
3069 6580 1.043116 TTCTCGCCAGATCCGTCCAT 61.043 55.000 0.00 0.00 0.00 3.41
3099 6610 0.102120 CTCGTCAGATCTGTCCAGGC 59.898 60.000 21.92 0.00 0.00 4.85
3155 6666 1.291132 GTTCGAGGCTCCACTAATGC 58.709 55.000 9.32 0.00 0.00 3.56
3166 6677 3.387962 TCCACTAATGCTGGATCCTTCT 58.612 45.455 14.23 0.00 32.52 2.85
3186 6697 3.195610 TCTTGGATGTGATTGTCTAGCGT 59.804 43.478 0.00 0.00 0.00 5.07
3196 6707 4.754618 TGATTGTCTAGCGTTGTTTGTCAT 59.245 37.500 0.00 0.00 0.00 3.06
3201 6712 1.032014 AGCGTTGTTTGTCATGGCTT 58.968 45.000 0.00 0.00 33.31 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.377554 GCACTCTCTCACATGCATGC 59.622 55.000 26.53 11.82 38.00 4.06
1 2 1.734163 TGCACTCTCTCACATGCATG 58.266 50.000 25.09 25.09 42.92 4.06
4 5 2.352034 CTCAATGCACTCTCTCACATGC 59.648 50.000 0.00 0.00 38.59 4.06
5 6 3.858247 TCTCAATGCACTCTCTCACATG 58.142 45.455 0.00 0.00 0.00 3.21
6 7 3.514706 ACTCTCAATGCACTCTCTCACAT 59.485 43.478 0.00 0.00 0.00 3.21
7 8 2.896044 ACTCTCAATGCACTCTCTCACA 59.104 45.455 0.00 0.00 0.00 3.58
8 9 3.252400 CACTCTCAATGCACTCTCTCAC 58.748 50.000 0.00 0.00 0.00 3.51
9 10 2.233186 CCACTCTCAATGCACTCTCTCA 59.767 50.000 0.00 0.00 0.00 3.27
10 11 2.495270 TCCACTCTCAATGCACTCTCTC 59.505 50.000 0.00 0.00 0.00 3.20
11 12 2.533916 TCCACTCTCAATGCACTCTCT 58.466 47.619 0.00 0.00 0.00 3.10
12 13 3.325293 TTCCACTCTCAATGCACTCTC 57.675 47.619 0.00 0.00 0.00 3.20
13 14 3.607741 CATTCCACTCTCAATGCACTCT 58.392 45.455 0.00 0.00 0.00 3.24
14 15 2.681848 CCATTCCACTCTCAATGCACTC 59.318 50.000 0.00 0.00 0.00 3.51
15 16 2.306805 TCCATTCCACTCTCAATGCACT 59.693 45.455 0.00 0.00 0.00 4.40
16 17 2.715046 TCCATTCCACTCTCAATGCAC 58.285 47.619 0.00 0.00 0.00 4.57
17 18 3.009363 TCTTCCATTCCACTCTCAATGCA 59.991 43.478 0.00 0.00 0.00 3.96
18 19 3.614092 TCTTCCATTCCACTCTCAATGC 58.386 45.455 0.00 0.00 0.00 3.56
19 20 6.770746 AATTCTTCCATTCCACTCTCAATG 57.229 37.500 0.00 0.00 0.00 2.82
20 21 8.910944 CATTAATTCTTCCATTCCACTCTCAAT 58.089 33.333 0.00 0.00 0.00 2.57
21 22 7.890127 ACATTAATTCTTCCATTCCACTCTCAA 59.110 33.333 0.00 0.00 0.00 3.02
22 23 7.337689 CACATTAATTCTTCCATTCCACTCTCA 59.662 37.037 0.00 0.00 0.00 3.27
23 24 7.554118 TCACATTAATTCTTCCATTCCACTCTC 59.446 37.037 0.00 0.00 0.00 3.20
24 25 7.405292 TCACATTAATTCTTCCATTCCACTCT 58.595 34.615 0.00 0.00 0.00 3.24
25 26 7.630242 TCACATTAATTCTTCCATTCCACTC 57.370 36.000 0.00 0.00 0.00 3.51
26 27 6.096001 GCTCACATTAATTCTTCCATTCCACT 59.904 38.462 0.00 0.00 0.00 4.00
27 28 6.127647 TGCTCACATTAATTCTTCCATTCCAC 60.128 38.462 0.00 0.00 0.00 4.02
28 29 5.951148 TGCTCACATTAATTCTTCCATTCCA 59.049 36.000 0.00 0.00 0.00 3.53
29 30 6.455360 TGCTCACATTAATTCTTCCATTCC 57.545 37.500 0.00 0.00 0.00 3.01
30 31 8.937634 ATTTGCTCACATTAATTCTTCCATTC 57.062 30.769 0.00 0.00 0.00 2.67
32 33 9.807649 GTAATTTGCTCACATTAATTCTTCCAT 57.192 29.630 0.00 0.00 0.00 3.41
33 34 9.023962 AGTAATTTGCTCACATTAATTCTTCCA 57.976 29.630 0.00 0.00 0.00 3.53
41 42 9.448438 AGACACATAGTAATTTGCTCACATTAA 57.552 29.630 0.00 0.00 0.00 1.40
42 43 9.448438 AAGACACATAGTAATTTGCTCACATTA 57.552 29.630 0.00 0.00 0.00 1.90
43 44 7.928307 AGACACATAGTAATTTGCTCACATT 57.072 32.000 0.00 0.00 0.00 2.71
44 45 7.148188 CCAAGACACATAGTAATTTGCTCACAT 60.148 37.037 0.00 0.00 0.00 3.21
45 46 6.149308 CCAAGACACATAGTAATTTGCTCACA 59.851 38.462 0.00 0.00 0.00 3.58
46 47 6.149474 ACCAAGACACATAGTAATTTGCTCAC 59.851 38.462 0.00 0.00 0.00 3.51
47 48 6.237901 ACCAAGACACATAGTAATTTGCTCA 58.762 36.000 0.00 0.00 0.00 4.26
48 49 6.595716 AGACCAAGACACATAGTAATTTGCTC 59.404 38.462 0.00 0.00 0.00 4.26
49 50 6.476378 AGACCAAGACACATAGTAATTTGCT 58.524 36.000 0.00 0.00 0.00 3.91
50 51 6.743575 AGACCAAGACACATAGTAATTTGC 57.256 37.500 0.00 0.00 0.00 3.68
51 52 9.653287 TCTTAGACCAAGACACATAGTAATTTG 57.347 33.333 0.00 0.00 38.39 2.32
52 53 9.877178 CTCTTAGACCAAGACACATAGTAATTT 57.123 33.333 0.00 0.00 38.39 1.82
53 54 9.256228 TCTCTTAGACCAAGACACATAGTAATT 57.744 33.333 0.00 0.00 38.39 1.40
54 55 8.824756 TCTCTTAGACCAAGACACATAGTAAT 57.175 34.615 0.00 0.00 38.39 1.89
55 56 8.645814 TTCTCTTAGACCAAGACACATAGTAA 57.354 34.615 0.00 0.00 38.39 2.24
56 57 7.889073 ACTTCTCTTAGACCAAGACACATAGTA 59.111 37.037 3.85 0.00 38.39 1.82
57 58 6.722129 ACTTCTCTTAGACCAAGACACATAGT 59.278 38.462 3.85 0.00 38.39 2.12
58 59 7.164230 ACTTCTCTTAGACCAAGACACATAG 57.836 40.000 3.85 0.00 38.39 2.23
59 60 7.015292 ACAACTTCTCTTAGACCAAGACACATA 59.985 37.037 3.85 0.00 38.39 2.29
60 61 6.183361 ACAACTTCTCTTAGACCAAGACACAT 60.183 38.462 3.85 0.00 38.39 3.21
61 62 5.128827 ACAACTTCTCTTAGACCAAGACACA 59.871 40.000 3.85 0.00 38.39 3.72
62 63 5.602628 ACAACTTCTCTTAGACCAAGACAC 58.397 41.667 3.85 0.00 38.39 3.67
63 64 5.598830 AGACAACTTCTCTTAGACCAAGACA 59.401 40.000 3.85 0.00 38.39 3.41
64 65 6.091718 AGACAACTTCTCTTAGACCAAGAC 57.908 41.667 3.85 0.00 38.39 3.01
65 66 6.732896 AAGACAACTTCTCTTAGACCAAGA 57.267 37.500 3.85 0.00 41.10 3.02
66 67 7.600752 CCTAAAGACAACTTCTCTTAGACCAAG 59.399 40.741 0.00 0.00 35.05 3.61
67 68 7.442656 CCTAAAGACAACTTCTCTTAGACCAA 58.557 38.462 0.00 0.00 35.05 3.67
68 69 6.518537 GCCTAAAGACAACTTCTCTTAGACCA 60.519 42.308 0.00 0.00 35.05 4.02
69 70 5.870433 GCCTAAAGACAACTTCTCTTAGACC 59.130 44.000 0.00 0.00 35.05 3.85
70 71 5.870433 GGCCTAAAGACAACTTCTCTTAGAC 59.130 44.000 0.00 0.00 35.05 2.59
71 72 5.780793 AGGCCTAAAGACAACTTCTCTTAGA 59.219 40.000 1.29 0.00 35.05 2.10
72 73 6.043854 AGGCCTAAAGACAACTTCTCTTAG 57.956 41.667 1.29 0.00 35.05 2.18
73 74 7.549147 TTAGGCCTAAAGACAACTTCTCTTA 57.451 36.000 23.21 0.00 35.05 2.10
74 75 4.984146 AGGCCTAAAGACAACTTCTCTT 57.016 40.909 1.29 0.00 35.05 2.85
75 76 6.628644 ATTAGGCCTAAAGACAACTTCTCT 57.371 37.500 28.50 4.96 35.05 3.10
76 77 8.666573 GTTTATTAGGCCTAAAGACAACTTCTC 58.333 37.037 28.50 6.62 35.05 2.87
77 78 7.610692 GGTTTATTAGGCCTAAAGACAACTTCT 59.389 37.037 28.50 10.86 35.05 2.85
78 79 7.148120 GGGTTTATTAGGCCTAAAGACAACTTC 60.148 40.741 28.50 17.62 35.05 3.01
79 80 6.662234 GGGTTTATTAGGCCTAAAGACAACTT 59.338 38.462 28.50 12.30 38.05 2.66
80 81 6.185511 GGGTTTATTAGGCCTAAAGACAACT 58.814 40.000 28.50 13.03 0.00 3.16
81 82 5.065602 CGGGTTTATTAGGCCTAAAGACAAC 59.934 44.000 28.50 23.66 0.00 3.32
82 83 5.187687 CGGGTTTATTAGGCCTAAAGACAA 58.812 41.667 28.50 16.49 0.00 3.18
83 84 4.384427 CCGGGTTTATTAGGCCTAAAGACA 60.384 45.833 28.50 10.52 0.00 3.41
84 85 4.132336 CCGGGTTTATTAGGCCTAAAGAC 58.868 47.826 28.50 23.35 0.00 3.01
85 86 4.039339 TCCGGGTTTATTAGGCCTAAAGA 58.961 43.478 28.50 16.79 0.00 2.52
86 87 4.132336 GTCCGGGTTTATTAGGCCTAAAG 58.868 47.826 28.50 13.19 0.00 1.85
87 88 3.432046 CGTCCGGGTTTATTAGGCCTAAA 60.432 47.826 28.50 12.25 0.00 1.85
88 89 2.102925 CGTCCGGGTTTATTAGGCCTAA 59.897 50.000 27.11 27.11 0.00 2.69
89 90 1.688197 CGTCCGGGTTTATTAGGCCTA 59.312 52.381 8.91 8.91 0.00 3.93
90 91 0.466963 CGTCCGGGTTTATTAGGCCT 59.533 55.000 11.78 11.78 0.00 5.19
91 92 0.533531 CCGTCCGGGTTTATTAGGCC 60.534 60.000 0.00 0.00 0.00 5.19
92 93 0.465287 TCCGTCCGGGTTTATTAGGC 59.535 55.000 0.00 0.00 37.00 3.93
93 94 1.069668 CCTCCGTCCGGGTTTATTAGG 59.930 57.143 0.00 0.00 37.00 2.69
94 95 1.069668 CCCTCCGTCCGGGTTTATTAG 59.930 57.143 0.00 0.00 36.91 1.73
95 96 1.122227 CCCTCCGTCCGGGTTTATTA 58.878 55.000 0.00 0.00 36.91 0.98
96 97 0.618393 TCCCTCCGTCCGGGTTTATT 60.618 55.000 0.00 0.00 42.56 1.40
97 98 1.002017 TCCCTCCGTCCGGGTTTAT 59.998 57.895 0.00 0.00 42.56 1.40
98 99 1.683365 CTCCCTCCGTCCGGGTTTA 60.683 63.158 0.00 0.00 42.56 2.01
99 100 2.445492 TACTCCCTCCGTCCGGGTTT 62.445 60.000 0.00 0.00 42.56 3.27
100 101 2.234246 ATACTCCCTCCGTCCGGGTT 62.234 60.000 0.00 0.00 42.56 4.11
101 102 1.355718 TATACTCCCTCCGTCCGGGT 61.356 60.000 0.00 0.00 42.56 5.28
102 103 0.039326 ATATACTCCCTCCGTCCGGG 59.961 60.000 0.00 0.00 43.38 5.73
103 104 1.004511 AGATATACTCCCTCCGTCCGG 59.995 57.143 0.00 0.00 0.00 5.14
104 105 2.493414 AGATATACTCCCTCCGTCCG 57.507 55.000 0.00 0.00 0.00 4.79
105 106 3.759618 CAGAAGATATACTCCCTCCGTCC 59.240 52.174 0.00 0.00 0.00 4.79
106 107 4.216687 CACAGAAGATATACTCCCTCCGTC 59.783 50.000 0.00 0.00 0.00 4.79
107 108 4.141228 TCACAGAAGATATACTCCCTCCGT 60.141 45.833 0.00 0.00 0.00 4.69
108 109 4.216687 GTCACAGAAGATATACTCCCTCCG 59.783 50.000 0.00 0.00 0.00 4.63
109 110 4.525100 GGTCACAGAAGATATACTCCCTCC 59.475 50.000 0.00 0.00 0.00 4.30
110 111 5.390387 AGGTCACAGAAGATATACTCCCTC 58.610 45.833 0.00 0.00 0.00 4.30
111 112 5.390387 GAGGTCACAGAAGATATACTCCCT 58.610 45.833 0.00 0.00 0.00 4.20
112 113 4.216687 CGAGGTCACAGAAGATATACTCCC 59.783 50.000 0.00 0.00 0.00 4.30
113 114 4.822896 ACGAGGTCACAGAAGATATACTCC 59.177 45.833 0.00 0.00 0.00 3.85
114 115 6.347888 GCTACGAGGTCACAGAAGATATACTC 60.348 46.154 0.00 0.00 0.00 2.59
125 126 2.724977 TTTCAGCTACGAGGTCACAG 57.275 50.000 0.00 0.00 0.00 3.66
171 172 5.304101 TCACATTCACAGCTAAAATGGGTTT 59.696 36.000 13.69 0.00 35.70 3.27
175 176 4.860907 GCTTCACATTCACAGCTAAAATGG 59.139 41.667 15.37 7.77 35.24 3.16
204 205 1.294459 GGAAAACGGACGGTAGCCT 59.706 57.895 0.00 0.00 0.00 4.58
221 222 3.826157 TGAAAAGACAAGGTTATGGCTGG 59.174 43.478 0.00 0.00 37.83 4.85
226 227 8.836413 TGACTTTAGTGAAAAGACAAGGTTATG 58.164 33.333 4.59 0.00 46.44 1.90
227 228 8.837389 GTGACTTTAGTGAAAAGACAAGGTTAT 58.163 33.333 4.59 0.00 46.45 1.89
288 447 3.000819 AACCAGTCGATCGCCCCA 61.001 61.111 11.09 0.00 0.00 4.96
297 456 3.325870 TGCTCTTCATTACAACCAGTCG 58.674 45.455 0.00 0.00 0.00 4.18
298 457 4.937620 TGATGCTCTTCATTACAACCAGTC 59.062 41.667 0.00 0.00 35.05 3.51
299 458 4.910195 TGATGCTCTTCATTACAACCAGT 58.090 39.130 0.00 0.00 35.05 4.00
300 459 7.741027 ATATGATGCTCTTCATTACAACCAG 57.259 36.000 4.01 0.00 37.51 4.00
301 460 8.432013 AGTATATGATGCTCTTCATTACAACCA 58.568 33.333 4.01 0.00 37.51 3.67
302 461 8.839310 AGTATATGATGCTCTTCATTACAACC 57.161 34.615 4.01 0.00 37.51 3.77
311 470 9.462174 GCATGATACTAGTATATGATGCTCTTC 57.538 37.037 27.59 12.58 33.92 2.87
312 471 8.975295 TGCATGATACTAGTATATGATGCTCTT 58.025 33.333 30.72 13.05 35.69 2.85
313 472 8.530804 TGCATGATACTAGTATATGATGCTCT 57.469 34.615 30.72 9.22 35.69 4.09
316 475 9.636879 CCTATGCATGATACTAGTATATGATGC 57.363 37.037 27.86 27.86 35.48 3.91
329 488 9.958234 CATACACTAGTATCCTATGCATGATAC 57.042 37.037 21.34 21.34 42.27 2.24
330 489 9.920946 TCATACACTAGTATCCTATGCATGATA 57.079 33.333 10.16 6.04 38.88 2.15
331 490 8.829373 TCATACACTAGTATCCTATGCATGAT 57.171 34.615 10.16 7.11 38.88 2.45
332 491 8.829373 ATCATACACTAGTATCCTATGCATGA 57.171 34.615 10.16 0.00 38.88 3.07
333 492 9.958234 GTATCATACACTAGTATCCTATGCATG 57.042 37.037 10.16 0.00 38.88 4.06
334 493 9.928618 AGTATCATACACTAGTATCCTATGCAT 57.071 33.333 3.79 3.79 38.88 3.96
340 499 9.908747 GGATGTAGTATCATACACTAGTATCCT 57.091 37.037 0.00 0.00 38.88 3.24
341 500 9.682465 TGGATGTAGTATCATACACTAGTATCC 57.318 37.037 0.00 13.60 38.88 2.59
348 507 8.815912 TGCATTATGGATGTAGTATCATACACT 58.184 33.333 0.00 0.00 40.81 3.55
349 508 9.435688 TTGCATTATGGATGTAGTATCATACAC 57.564 33.333 0.00 0.00 40.81 2.90
406 565 9.008965 ACTTTGTGTCATGCATGTTAGTAAATA 57.991 29.630 25.43 0.46 0.00 1.40
407 566 7.885297 ACTTTGTGTCATGCATGTTAGTAAAT 58.115 30.769 25.43 5.58 0.00 1.40
408 567 7.270757 ACTTTGTGTCATGCATGTTAGTAAA 57.729 32.000 25.43 18.17 0.00 2.01
409 568 6.875948 ACTTTGTGTCATGCATGTTAGTAA 57.124 33.333 25.43 14.23 0.00 2.24
410 569 6.092122 GCTACTTTGTGTCATGCATGTTAGTA 59.908 38.462 25.43 19.62 0.00 1.82
411 570 5.106555 GCTACTTTGTGTCATGCATGTTAGT 60.107 40.000 25.43 19.56 0.00 2.24
412 571 5.106594 TGCTACTTTGTGTCATGCATGTTAG 60.107 40.000 25.43 15.70 0.00 2.34
413 572 4.759183 TGCTACTTTGTGTCATGCATGTTA 59.241 37.500 25.43 13.28 0.00 2.41
414 573 3.569277 TGCTACTTTGTGTCATGCATGTT 59.431 39.130 25.43 4.72 0.00 2.71
415 574 3.058016 GTGCTACTTTGTGTCATGCATGT 60.058 43.478 25.43 6.98 34.18 3.21
416 575 3.058085 TGTGCTACTTTGTGTCATGCATG 60.058 43.478 21.07 21.07 34.18 4.06
417 576 3.148412 TGTGCTACTTTGTGTCATGCAT 58.852 40.909 0.00 0.00 34.18 3.96
418 577 2.570135 TGTGCTACTTTGTGTCATGCA 58.430 42.857 0.00 0.00 0.00 3.96
419 578 3.189080 TGATGTGCTACTTTGTGTCATGC 59.811 43.478 0.00 0.00 0.00 4.06
420 579 5.556355 ATGATGTGCTACTTTGTGTCATG 57.444 39.130 0.00 0.00 0.00 3.07
421 580 6.579666 AAATGATGTGCTACTTTGTGTCAT 57.420 33.333 0.00 0.00 0.00 3.06
422 581 7.503521 TTAAATGATGTGCTACTTTGTGTCA 57.496 32.000 0.00 0.00 0.00 3.58
459 618 9.788889 AAAAGATGCTTCAGTATCATATCATGA 57.211 29.630 0.00 0.00 44.55 3.07
508 667 9.282247 GCATGTCAACTAAGTAATTTTGATGAG 57.718 33.333 0.00 0.00 30.96 2.90
509 668 8.791675 TGCATGTCAACTAAGTAATTTTGATGA 58.208 29.630 0.00 0.00 30.96 2.92
510 669 8.969121 TGCATGTCAACTAAGTAATTTTGATG 57.031 30.769 0.00 0.00 30.96 3.07
511 670 9.577110 CATGCATGTCAACTAAGTAATTTTGAT 57.423 29.630 18.91 0.00 30.96 2.57
512 671 8.791675 TCATGCATGTCAACTAAGTAATTTTGA 58.208 29.630 25.43 0.00 0.00 2.69
513 672 8.969121 TCATGCATGTCAACTAAGTAATTTTG 57.031 30.769 25.43 0.00 0.00 2.44
515 674 9.793252 GAATCATGCATGTCAACTAAGTAATTT 57.207 29.630 25.43 0.00 0.00 1.82
516 675 9.182214 AGAATCATGCATGTCAACTAAGTAATT 57.818 29.630 25.43 13.05 0.00 1.40
517 676 8.743085 AGAATCATGCATGTCAACTAAGTAAT 57.257 30.769 25.43 5.02 0.00 1.89
518 677 9.098355 GTAGAATCATGCATGTCAACTAAGTAA 57.902 33.333 25.43 2.66 0.00 2.24
519 678 7.710907 GGTAGAATCATGCATGTCAACTAAGTA 59.289 37.037 25.43 3.20 0.00 2.24
520 679 6.540189 GGTAGAATCATGCATGTCAACTAAGT 59.460 38.462 25.43 4.23 0.00 2.24
521 680 6.765036 AGGTAGAATCATGCATGTCAACTAAG 59.235 38.462 25.43 0.00 0.00 2.18
522 681 6.653020 AGGTAGAATCATGCATGTCAACTAA 58.347 36.000 25.43 5.50 0.00 2.24
523 682 6.239217 AGGTAGAATCATGCATGTCAACTA 57.761 37.500 25.43 19.35 0.00 2.24
524 683 5.108187 AGGTAGAATCATGCATGTCAACT 57.892 39.130 25.43 20.21 0.00 3.16
525 684 6.707608 TCATAGGTAGAATCATGCATGTCAAC 59.292 38.462 25.43 16.34 0.00 3.18
526 685 6.829849 TCATAGGTAGAATCATGCATGTCAA 58.170 36.000 25.43 7.83 0.00 3.18
527 686 6.423776 TCATAGGTAGAATCATGCATGTCA 57.576 37.500 25.43 8.61 0.00 3.58
528 687 8.256605 AGTATCATAGGTAGAATCATGCATGTC 58.743 37.037 25.43 16.75 0.00 3.06
529 688 8.143673 AGTATCATAGGTAGAATCATGCATGT 57.856 34.615 25.43 8.12 0.00 3.21
532 691 9.479549 TGATAGTATCATAGGTAGAATCATGCA 57.520 33.333 8.84 0.00 33.59 3.96
545 704 9.035259 AGGCTGCCCGTAATGATAGTATCATAG 62.035 44.444 22.95 16.06 41.86 2.23
546 705 7.314071 AGGCTGCCCGTAATGATAGTATCATA 61.314 42.308 22.95 10.82 41.86 2.15
547 706 6.572553 AGGCTGCCCGTAATGATAGTATCAT 61.573 44.000 18.22 18.22 43.35 2.45
548 707 3.056107 GGCTGCCCGTAATGATAGTATCA 60.056 47.826 15.10 15.10 44.55 2.15
549 708 3.195825 AGGCTGCCCGTAATGATAGTATC 59.804 47.826 16.57 2.97 35.76 2.24
550 709 3.173965 AGGCTGCCCGTAATGATAGTAT 58.826 45.455 16.57 0.00 35.76 2.12
551 710 2.605257 AGGCTGCCCGTAATGATAGTA 58.395 47.619 16.57 0.00 35.76 1.82
552 711 1.424638 AGGCTGCCCGTAATGATAGT 58.575 50.000 16.57 0.00 35.76 2.12
553 712 2.550830 AAGGCTGCCCGTAATGATAG 57.449 50.000 16.57 0.00 35.76 2.08
554 713 3.580895 TGATAAGGCTGCCCGTAATGATA 59.419 43.478 16.57 0.00 35.76 2.15
555 714 2.371841 TGATAAGGCTGCCCGTAATGAT 59.628 45.455 16.57 0.00 35.76 2.45
556 715 1.765904 TGATAAGGCTGCCCGTAATGA 59.234 47.619 16.57 0.00 35.76 2.57
557 716 2.254546 TGATAAGGCTGCCCGTAATG 57.745 50.000 16.57 0.00 35.76 1.90
558 717 3.214328 CTTTGATAAGGCTGCCCGTAAT 58.786 45.455 16.57 3.61 35.76 1.89
559 718 2.639065 CTTTGATAAGGCTGCCCGTAA 58.361 47.619 16.57 1.14 35.76 3.18
560 719 1.134220 CCTTTGATAAGGCTGCCCGTA 60.134 52.381 16.57 8.68 44.27 4.02
561 720 0.394352 CCTTTGATAAGGCTGCCCGT 60.394 55.000 16.57 6.37 44.27 5.28
562 721 2.408333 CCTTTGATAAGGCTGCCCG 58.592 57.895 16.57 0.00 44.27 6.13
590 749 2.665185 GACGGCCAAGTGCGTCTT 60.665 61.111 2.24 0.00 42.61 3.01
607 766 0.179145 AGTAACGTCTCGCGAATGGG 60.179 55.000 11.33 0.00 44.77 4.00
623 782 6.993786 TTGTGAATTGTGACTTTGTGAGTA 57.006 33.333 0.00 0.00 39.19 2.59
625 784 5.745294 CCTTTGTGAATTGTGACTTTGTGAG 59.255 40.000 0.00 0.00 0.00 3.51
635 794 2.624838 AGCTGACCCTTTGTGAATTGTG 59.375 45.455 0.00 0.00 0.00 3.33
637 796 2.608752 GCAGCTGACCCTTTGTGAATTG 60.609 50.000 20.43 0.00 0.00 2.32
898 3567 1.080772 CAACCGCACTGACGAGCTA 60.081 57.895 0.00 0.00 34.06 3.32
918 3587 1.598924 CCTACGACGCGGTTTAGATCC 60.599 57.143 12.47 0.00 0.00 3.36
928 3597 2.053291 CGCTAGTCCTACGACGCG 60.053 66.667 3.53 3.53 44.28 6.01
930 3599 2.541120 CCCCGCTAGTCCTACGACG 61.541 68.421 0.00 0.00 44.28 5.12
934 3603 0.466922 TGCTACCCCGCTAGTCCTAC 60.467 60.000 0.00 0.00 0.00 3.18
937 3606 1.757340 ACTGCTACCCCGCTAGTCC 60.757 63.158 0.00 0.00 0.00 3.85
938 3607 1.437986 CACTGCTACCCCGCTAGTC 59.562 63.158 0.00 0.00 0.00 2.59
939 3608 2.058595 CCACTGCTACCCCGCTAGT 61.059 63.158 0.00 0.00 0.00 2.57
940 3609 2.815308 CCACTGCTACCCCGCTAG 59.185 66.667 0.00 0.00 0.00 3.42
941 3610 3.467226 GCCACTGCTACCCCGCTA 61.467 66.667 0.00 0.00 33.53 4.26
966 3637 2.970324 GAGCCCACGCACGACAAA 60.970 61.111 0.00 0.00 37.52 2.83
980 3651 0.383949 TTTCCAAACTTGCCACGAGC 59.616 50.000 0.00 0.00 44.14 5.03
1037 3712 3.723364 CTTTCTTGATGGCGCCGCG 62.723 63.158 23.90 8.83 0.00 6.46
1043 3718 0.449388 CTCGCACCTTTCTTGATGGC 59.551 55.000 0.00 0.00 0.00 4.40
1641 4316 2.954611 GCCACCGAAAGCCAAGTC 59.045 61.111 0.00 0.00 0.00 3.01
2259 4934 5.651530 AGAGTATTTCACTGTACATCCGTG 58.348 41.667 7.27 7.27 37.72 4.94
2368 5545 5.829924 ACTCACTCATTTCAGTCCAAAATGT 59.170 36.000 8.06 0.00 42.23 2.71
2508 6019 6.061441 TCATTAGGAGAAAAGCTCACAACAA 58.939 36.000 0.00 0.00 45.81 2.83
2528 6039 5.047188 GGTTGATGGTTGTTTCGTTTCATT 58.953 37.500 0.00 0.00 0.00 2.57
2536 6047 3.222603 AGAGGTGGTTGATGGTTGTTTC 58.777 45.455 0.00 0.00 0.00 2.78
2551 6062 1.785041 CGGTTGTGTGCCAAGAGGTG 61.785 60.000 0.00 0.00 37.19 4.00
2552 6063 1.525995 CGGTTGTGTGCCAAGAGGT 60.526 57.895 0.00 0.00 37.19 3.85
2553 6064 2.908073 GCGGTTGTGTGCCAAGAGG 61.908 63.158 0.00 0.00 32.51 3.69
2554 6065 1.447317 AAGCGGTTGTGTGCCAAGAG 61.447 55.000 0.00 0.00 32.51 2.85
2555 6066 1.453015 AAGCGGTTGTGTGCCAAGA 60.453 52.632 0.00 0.00 32.51 3.02
2556 6067 1.299316 CAAGCGGTTGTGTGCCAAG 60.299 57.895 18.96 0.00 32.51 3.61
2557 6068 1.599606 AACAAGCGGTTGTGTGCCAA 61.600 50.000 31.44 0.00 46.68 4.52
2558 6069 1.599606 AAACAAGCGGTTGTGTGCCA 61.600 50.000 31.44 0.00 46.68 4.92
2559 6070 0.459411 AAAACAAGCGGTTGTGTGCC 60.459 50.000 31.44 0.00 46.68 5.01
2560 6071 2.116366 CTAAAACAAGCGGTTGTGTGC 58.884 47.619 31.44 0.00 46.68 4.57
2561 6072 2.726633 CCTAAAACAAGCGGTTGTGTG 58.273 47.619 31.44 20.20 46.68 3.82
2562 6073 1.066454 GCCTAAAACAAGCGGTTGTGT 59.934 47.619 31.44 24.65 46.68 3.72
2563 6074 1.766069 GCCTAAAACAAGCGGTTGTG 58.234 50.000 31.44 19.76 46.68 3.33
2565 6076 3.086161 CGCCTAAAACAAGCGGTTG 57.914 52.632 24.85 24.85 45.88 3.77
2666 6177 2.203625 AACCATGCGGGGCTTTGT 60.204 55.556 0.00 0.00 42.91 2.83
2686 6197 0.611062 AAGAGATCCCGTCGTCACCA 60.611 55.000 0.00 0.00 0.00 4.17
2691 6202 1.104630 GGAGAAAGAGATCCCGTCGT 58.895 55.000 0.00 0.00 0.00 4.34
2730 6241 2.089980 GAAGCAGTTGCATGATCACCT 58.910 47.619 6.90 0.00 45.16 4.00
2742 6253 3.072944 GCAGATCTCACAAGAAGCAGTT 58.927 45.455 0.00 0.00 34.49 3.16
2752 6263 1.216444 GAGCCGTGCAGATCTCACA 59.784 57.895 18.95 8.09 34.27 3.58
2768 6279 1.944676 GCGTTGGACGATAGCGGAG 60.945 63.158 4.97 0.00 46.05 4.63
2769 6280 2.103538 GCGTTGGACGATAGCGGA 59.896 61.111 4.97 0.00 46.05 5.54
2770 6281 1.944676 GAGCGTTGGACGATAGCGG 60.945 63.158 4.97 0.00 41.80 5.52
2771 6282 1.944676 GGAGCGTTGGACGATAGCG 60.945 63.158 0.00 0.00 41.80 4.26
2772 6283 1.141019 TGGAGCGTTGGACGATAGC 59.859 57.895 4.46 0.00 41.80 2.97
2773 6284 0.456221 AGTGGAGCGTTGGACGATAG 59.544 55.000 4.46 0.00 41.80 2.08
2774 6285 1.753930 TAGTGGAGCGTTGGACGATA 58.246 50.000 4.46 0.00 41.80 2.92
2775 6286 0.892755 TTAGTGGAGCGTTGGACGAT 59.107 50.000 4.46 0.00 45.73 3.73
2776 6287 0.892755 ATTAGTGGAGCGTTGGACGA 59.107 50.000 4.46 0.00 46.05 4.20
2777 6288 0.999406 CATTAGTGGAGCGTTGGACG 59.001 55.000 0.00 0.00 45.88 4.79
2778 6289 0.727398 GCATTAGTGGAGCGTTGGAC 59.273 55.000 0.00 0.00 0.00 4.02
2779 6290 0.613260 AGCATTAGTGGAGCGTTGGA 59.387 50.000 0.00 0.00 0.00 3.53
2780 6291 1.009829 GAGCATTAGTGGAGCGTTGG 58.990 55.000 0.00 0.00 0.00 3.77
2781 6292 0.647410 CGAGCATTAGTGGAGCGTTG 59.353 55.000 0.00 0.00 0.00 4.10
2782 6293 0.530744 TCGAGCATTAGTGGAGCGTT 59.469 50.000 0.00 0.00 0.00 4.84
2783 6294 0.747255 ATCGAGCATTAGTGGAGCGT 59.253 50.000 0.00 0.00 0.00 5.07
2784 6295 1.413382 GATCGAGCATTAGTGGAGCG 58.587 55.000 0.00 0.00 0.00 5.03
2785 6296 1.342819 AGGATCGAGCATTAGTGGAGC 59.657 52.381 1.84 0.00 0.00 4.70
2786 6297 3.320541 AGAAGGATCGAGCATTAGTGGAG 59.679 47.826 0.00 0.00 0.00 3.86
2787 6298 3.300388 AGAAGGATCGAGCATTAGTGGA 58.700 45.455 0.00 0.00 0.00 4.02
2788 6299 3.742433 AGAAGGATCGAGCATTAGTGG 57.258 47.619 0.00 0.00 0.00 4.00
2789 6300 3.806521 CCAAGAAGGATCGAGCATTAGTG 59.193 47.826 0.00 2.00 41.22 2.74
2790 6301 3.706594 TCCAAGAAGGATCGAGCATTAGT 59.293 43.478 0.00 0.00 43.07 2.24
2791 6302 4.327982 TCCAAGAAGGATCGAGCATTAG 57.672 45.455 0.00 0.00 43.07 1.73
2803 6314 3.194116 CCAACCAATCACATCCAAGAAGG 59.806 47.826 0.00 0.00 39.47 3.46
2804 6315 3.367703 GCCAACCAATCACATCCAAGAAG 60.368 47.826 0.00 0.00 0.00 2.85
2805 6316 2.562298 GCCAACCAATCACATCCAAGAA 59.438 45.455 0.00 0.00 0.00 2.52
2806 6317 2.170166 GCCAACCAATCACATCCAAGA 58.830 47.619 0.00 0.00 0.00 3.02
2807 6318 2.173519 AGCCAACCAATCACATCCAAG 58.826 47.619 0.00 0.00 0.00 3.61
2808 6319 2.307496 AGCCAACCAATCACATCCAA 57.693 45.000 0.00 0.00 0.00 3.53
2809 6320 2.308570 AGTAGCCAACCAATCACATCCA 59.691 45.455 0.00 0.00 0.00 3.41
2810 6321 3.004752 AGTAGCCAACCAATCACATCC 57.995 47.619 0.00 0.00 0.00 3.51
2811 6322 4.265073 AGAAGTAGCCAACCAATCACATC 58.735 43.478 0.00 0.00 0.00 3.06
2812 6323 4.265073 GAGAAGTAGCCAACCAATCACAT 58.735 43.478 0.00 0.00 0.00 3.21
2813 6324 3.674997 GAGAAGTAGCCAACCAATCACA 58.325 45.455 0.00 0.00 0.00 3.58
2814 6325 2.673368 CGAGAAGTAGCCAACCAATCAC 59.327 50.000 0.00 0.00 0.00 3.06
2815 6326 2.301870 ACGAGAAGTAGCCAACCAATCA 59.698 45.455 0.00 0.00 0.00 2.57
2816 6327 2.673368 CACGAGAAGTAGCCAACCAATC 59.327 50.000 0.00 0.00 0.00 2.67
2817 6328 2.301870 TCACGAGAAGTAGCCAACCAAT 59.698 45.455 0.00 0.00 0.00 3.16
2818 6329 1.689813 TCACGAGAAGTAGCCAACCAA 59.310 47.619 0.00 0.00 0.00 3.67
2819 6330 1.272490 CTCACGAGAAGTAGCCAACCA 59.728 52.381 0.00 0.00 0.00 3.67
2820 6331 1.544691 TCTCACGAGAAGTAGCCAACC 59.455 52.381 0.00 0.00 33.91 3.77
2821 6332 3.440228 GATCTCACGAGAAGTAGCCAAC 58.560 50.000 0.00 0.00 41.36 3.77
2822 6333 2.427453 GGATCTCACGAGAAGTAGCCAA 59.573 50.000 0.00 0.00 41.36 4.52
2823 6334 2.025155 GGATCTCACGAGAAGTAGCCA 58.975 52.381 0.00 0.00 41.36 4.75
2824 6335 1.002251 CGGATCTCACGAGAAGTAGCC 60.002 57.143 0.00 0.00 41.36 3.93
2825 6336 1.671845 ACGGATCTCACGAGAAGTAGC 59.328 52.381 0.00 0.00 41.36 3.58
2826 6337 2.288458 GGACGGATCTCACGAGAAGTAG 59.712 54.545 0.00 0.00 41.36 2.57
2827 6338 2.286872 GGACGGATCTCACGAGAAGTA 58.713 52.381 0.00 0.00 41.36 2.24
2828 6339 1.096416 GGACGGATCTCACGAGAAGT 58.904 55.000 0.00 2.27 41.36 3.01
2829 6340 1.064803 CTGGACGGATCTCACGAGAAG 59.935 57.143 0.00 0.00 41.36 2.85
2830 6341 1.095600 CTGGACGGATCTCACGAGAA 58.904 55.000 0.00 0.00 41.36 2.87
2831 6342 0.748367 CCTGGACGGATCTCACGAGA 60.748 60.000 0.00 0.00 42.37 4.04
2832 6343 0.748367 TCCTGGACGGATCTCACGAG 60.748 60.000 0.00 0.00 36.69 4.18
2833 6344 0.323087 TTCCTGGACGGATCTCACGA 60.323 55.000 0.00 0.00 42.70 4.35
2834 6345 0.101399 CTTCCTGGACGGATCTCACG 59.899 60.000 0.00 0.00 42.70 4.35
2835 6346 0.179097 GCTTCCTGGACGGATCTCAC 60.179 60.000 0.00 0.00 42.70 3.51
2836 6347 0.324738 AGCTTCCTGGACGGATCTCA 60.325 55.000 0.00 0.00 42.70 3.27
2837 6348 0.103937 CAGCTTCCTGGACGGATCTC 59.896 60.000 0.00 0.00 42.70 2.75
2838 6349 1.965754 GCAGCTTCCTGGACGGATCT 61.966 60.000 0.00 0.00 42.70 2.75
2839 6350 1.522580 GCAGCTTCCTGGACGGATC 60.523 63.158 0.00 0.00 42.70 3.36
2840 6351 1.965754 GAGCAGCTTCCTGGACGGAT 61.966 60.000 0.00 0.00 42.70 4.18
2841 6352 2.604686 AGCAGCTTCCTGGACGGA 60.605 61.111 0.00 0.00 39.54 4.69
2842 6353 2.125350 GAGCAGCTTCCTGGACGG 60.125 66.667 0.00 0.00 39.54 4.79
2843 6354 2.125350 GGAGCAGCTTCCTGGACG 60.125 66.667 0.00 0.00 39.54 4.79
2844 6355 0.676151 CAAGGAGCAGCTTCCTGGAC 60.676 60.000 7.75 0.00 46.90 4.02
2845 6356 1.130054 ACAAGGAGCAGCTTCCTGGA 61.130 55.000 14.80 0.00 46.90 3.86
2846 6357 0.959372 CACAAGGAGCAGCTTCCTGG 60.959 60.000 7.75 7.48 46.90 4.45
2847 6358 0.035881 TCACAAGGAGCAGCTTCCTG 59.964 55.000 7.75 6.01 46.90 3.86
2849 6360 0.322975 TCTCACAAGGAGCAGCTTCC 59.677 55.000 0.00 0.00 43.70 3.46
2850 6361 2.278854 GATCTCACAAGGAGCAGCTTC 58.721 52.381 0.00 0.00 43.70 3.86
2851 6362 1.065564 GGATCTCACAAGGAGCAGCTT 60.066 52.381 0.00 0.00 43.70 3.74
2852 6363 0.540923 GGATCTCACAAGGAGCAGCT 59.459 55.000 0.00 0.00 43.70 4.24
2853 6364 0.809241 CGGATCTCACAAGGAGCAGC 60.809 60.000 0.00 0.00 43.70 5.25
2854 6365 0.534412 ACGGATCTCACAAGGAGCAG 59.466 55.000 0.00 0.00 43.70 4.24
2855 6366 0.247460 CACGGATCTCACAAGGAGCA 59.753 55.000 0.00 0.00 43.70 4.26
2856 6367 1.086634 GCACGGATCTCACAAGGAGC 61.087 60.000 0.00 0.00 43.70 4.70
2857 6368 0.803768 CGCACGGATCTCACAAGGAG 60.804 60.000 0.00 0.00 45.49 3.69
2858 6369 1.215382 CGCACGGATCTCACAAGGA 59.785 57.895 0.00 0.00 0.00 3.36
2859 6370 1.811266 CCGCACGGATCTCACAAGG 60.811 63.158 2.01 0.00 37.50 3.61
2860 6371 2.456119 GCCGCACGGATCTCACAAG 61.456 63.158 14.43 0.00 37.50 3.16
2861 6372 2.434185 GCCGCACGGATCTCACAA 60.434 61.111 14.43 0.00 37.50 3.33
2862 6373 3.356639 GAGCCGCACGGATCTCACA 62.357 63.158 19.39 0.00 46.28 3.58
2863 6374 2.583593 GAGCCGCACGGATCTCAC 60.584 66.667 19.39 0.00 46.28 3.51
2868 6379 2.514592 CAATGGAGCCGCACGGAT 60.515 61.111 14.43 6.35 37.50 4.18
2938 6449 1.658686 GGACGGATCTCACGAGCAGT 61.659 60.000 0.00 0.00 36.69 4.40
2941 6452 1.064946 CTGGACGGATCTCACGAGC 59.935 63.158 0.00 0.00 34.93 5.03
2972 6483 3.356639 GAGCCGCACGGATCTCACA 62.357 63.158 19.39 0.00 46.28 3.58
3023 6534 2.303022 GAGACAATCACACCCAGGAAGA 59.697 50.000 0.00 0.00 0.00 2.87
3032 6543 1.127582 GAAGCAGCGAGACAATCACAC 59.872 52.381 0.00 0.00 0.00 3.82
3069 6580 3.921767 CTGACGAGAAGCAGCCGCA 62.922 63.158 0.00 0.00 42.27 5.69
3099 6610 3.677284 ATCTCACCAGCAGCAGCCG 62.677 63.158 0.00 0.00 43.56 5.52
3107 6618 1.448540 CCACACGGATCTCACCAGC 60.449 63.158 0.00 0.00 0.00 4.85
3108 6619 1.448540 GCCACACGGATCTCACCAG 60.449 63.158 0.00 0.00 0.00 4.00
3140 6651 0.833287 TCCAGCATTAGTGGAGCCTC 59.167 55.000 0.00 0.00 39.28 4.70
3166 6677 3.610040 ACGCTAGACAATCACATCCAA 57.390 42.857 0.00 0.00 0.00 3.53
3182 6693 1.001378 GAAGCCATGACAAACAACGCT 60.001 47.619 0.00 0.00 38.15 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.