Multiple sequence alignment - TraesCS3A01G253400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G253400 chr3A 100.000 2297 0 0 1 2297 474806929 474809225 0.000000e+00 4242
1 TraesCS3A01G253400 chr3A 80.488 328 21 18 377 664 474841334 474841658 6.430000e-51 211
2 TraesCS3A01G253400 chr3D 94.084 1217 39 8 255 1460 355746162 355747356 0.000000e+00 1818
3 TraesCS3A01G253400 chr3D 87.843 255 19 3 1 249 355745855 355746103 2.890000e-74 289
4 TraesCS3A01G253400 chr3D 81.138 334 25 15 367 664 355809471 355809802 1.370000e-57 233
5 TraesCS3A01G253400 chr3B 95.419 633 11 5 830 1460 456862851 456863467 0.000000e+00 992
6 TraesCS3A01G253400 chr3B 88.321 548 38 15 255 795 456862321 456862849 3.220000e-178 634
7 TraesCS3A01G253400 chr3B 85.132 417 27 11 1904 2293 456957814 456958222 5.950000e-106 394
8 TraesCS3A01G253400 chr3B 89.453 256 16 2 4 253 456862014 456862264 1.710000e-81 313
9 TraesCS3A01G253400 chr3B 80.597 335 25 15 367 664 456987026 456987357 2.970000e-54 222
10 TraesCS3A01G253400 chr7D 77.157 591 105 11 1727 2293 591863396 591862812 1.320000e-82 316
11 TraesCS3A01G253400 chr7A 77.495 551 98 8 1727 2251 683103283 683102733 7.970000e-80 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G253400 chr3A 474806929 474809225 2296 False 4242.000000 4242 100.000000 1 2297 1 chr3A.!!$F1 2296
1 TraesCS3A01G253400 chr3D 355745855 355747356 1501 False 1053.500000 1818 90.963500 1 1460 2 chr3D.!!$F2 1459
2 TraesCS3A01G253400 chr3B 456862014 456863467 1453 False 646.333333 992 91.064333 4 1460 3 chr3B.!!$F3 1456
3 TraesCS3A01G253400 chr7D 591862812 591863396 584 True 316.000000 316 77.157000 1727 2293 1 chr7D.!!$R1 566
4 TraesCS3A01G253400 chr7A 683102733 683103283 550 True 307.000000 307 77.495000 1727 2251 1 chr7A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 224 0.039074 ACGGAATCGATCCTCGCATC 60.039 55.0 0.0 0.0 46.98 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 1763 0.037046 GTCCGTTTGGGTCGGTGTAT 60.037 55.0 4.36 0.0 46.86 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.348119 TGATAGAGGCATAGAGCTACGG 58.652 50.000 0.00 0.00 44.79 4.02
109 116 4.086199 TCGGCAATATTTTCGACCAAAC 57.914 40.909 5.97 0.00 0.00 2.93
110 117 3.502595 TCGGCAATATTTTCGACCAAACA 59.497 39.130 5.97 0.00 0.00 2.83
111 118 3.606346 CGGCAATATTTTCGACCAAACAC 59.394 43.478 2.08 0.00 0.00 3.32
112 119 3.924073 GGCAATATTTTCGACCAAACACC 59.076 43.478 0.00 0.00 0.00 4.16
113 120 3.924073 GCAATATTTTCGACCAAACACCC 59.076 43.478 0.00 0.00 0.00 4.61
186 193 5.396484 TCTCCGTACGTCTATTTCAAAGTG 58.604 41.667 15.21 0.00 0.00 3.16
187 194 5.181811 TCTCCGTACGTCTATTTCAAAGTGA 59.818 40.000 15.21 0.00 0.00 3.41
192 199 6.414109 CGTACGTCTATTTCAAAGTGATCGAT 59.586 38.462 7.22 0.00 0.00 3.59
217 224 0.039074 ACGGAATCGATCCTCGCATC 60.039 55.000 0.00 0.00 46.98 3.91
277 342 3.678056 AAAAGGTATCACGCTGACTCA 57.322 42.857 0.00 0.00 0.00 3.41
456 528 2.942376 CCCTATACGTACGTACACACCA 59.058 50.000 28.99 8.81 33.01 4.17
471 543 1.006102 ACCAGACTTGAAGTCCGCG 60.006 57.895 20.81 11.25 46.18 6.46
544 620 7.601886 CCTCACATCTAGTATTGCTTATCTTGG 59.398 40.741 0.00 0.00 0.00 3.61
545 621 6.931281 TCACATCTAGTATTGCTTATCTTGGC 59.069 38.462 0.00 0.00 0.00 4.52
609 687 4.934356 TGATAACCTTGCATTCCTTTCCT 58.066 39.130 0.00 0.00 0.00 3.36
628 706 5.912149 TCCTGCTGGGATAGAATAAACAT 57.088 39.130 10.07 0.00 39.58 2.71
672 750 3.004090 TCCCTCGGATGGAGACGA 58.996 61.111 0.00 0.00 46.23 4.20
673 751 1.537172 TCCCTCGGATGGAGACGAT 59.463 57.895 0.00 0.00 46.23 3.73
674 752 0.537600 TCCCTCGGATGGAGACGATC 60.538 60.000 0.00 0.00 46.23 3.69
675 753 0.823769 CCCTCGGATGGAGACGATCA 60.824 60.000 0.00 0.00 46.23 2.92
676 754 0.595588 CCTCGGATGGAGACGATCAG 59.404 60.000 0.00 0.00 46.23 2.90
913 998 3.173965 CAGAGAAAGGAGGAGGGTGTTA 58.826 50.000 0.00 0.00 0.00 2.41
916 1001 0.992695 AAAGGAGGAGGGTGTTAGCC 59.007 55.000 0.00 0.00 35.59 3.93
965 1050 1.560860 GCATCGATCAAGCGGGCTAC 61.561 60.000 0.00 0.00 0.00 3.58
1041 1126 3.745803 GAGACGTTCCGGCGGTCT 61.746 66.667 27.32 21.02 41.28 3.85
1331 1416 1.440353 CCGCTTGCGTTACTTGTGC 60.440 57.895 13.97 0.00 0.00 4.57
1332 1417 1.440353 CGCTTGCGTTACTTGTGCC 60.440 57.895 6.86 0.00 0.00 5.01
1333 1418 1.841663 CGCTTGCGTTACTTGTGCCT 61.842 55.000 6.86 0.00 0.00 4.75
1334 1419 0.310854 GCTTGCGTTACTTGTGCCTT 59.689 50.000 0.00 0.00 0.00 4.35
1335 1420 1.925946 GCTTGCGTTACTTGTGCCTTG 60.926 52.381 0.00 0.00 0.00 3.61
1336 1421 1.333619 CTTGCGTTACTTGTGCCTTGT 59.666 47.619 0.00 0.00 0.00 3.16
1337 1422 0.660488 TGCGTTACTTGTGCCTTGTG 59.340 50.000 0.00 0.00 0.00 3.33
1430 1517 5.749620 CGCTAGACTTAGTACGAATGATGT 58.250 41.667 0.00 0.00 0.00 3.06
1449 1536 1.906333 GGGGGCGTTGGTGTTGATT 60.906 57.895 0.00 0.00 0.00 2.57
1466 1553 6.520449 GTTGATTTCAACGCGTAACTTATG 57.480 37.500 14.46 6.01 45.44 1.90
1467 1554 5.849357 TGATTTCAACGCGTAACTTATGT 57.151 34.783 14.46 0.00 0.00 2.29
1468 1555 6.947903 TGATTTCAACGCGTAACTTATGTA 57.052 33.333 14.46 0.00 0.00 2.29
1469 1556 7.528481 TGATTTCAACGCGTAACTTATGTAT 57.472 32.000 14.46 4.41 0.00 2.29
1470 1557 7.966111 TGATTTCAACGCGTAACTTATGTATT 58.034 30.769 14.46 0.00 0.00 1.89
1471 1558 7.900864 TGATTTCAACGCGTAACTTATGTATTG 59.099 33.333 14.46 1.84 0.00 1.90
1472 1559 6.947903 TTCAACGCGTAACTTATGTATTGA 57.052 33.333 14.46 4.75 0.00 2.57
1473 1560 7.528481 TTCAACGCGTAACTTATGTATTGAT 57.472 32.000 14.46 0.00 0.00 2.57
1474 1561 6.928820 TCAACGCGTAACTTATGTATTGATG 58.071 36.000 14.46 0.30 0.00 3.07
1475 1562 5.324739 ACGCGTAACTTATGTATTGATGC 57.675 39.130 11.67 0.00 0.00 3.91
1476 1563 5.047847 ACGCGTAACTTATGTATTGATGCT 58.952 37.500 11.67 0.00 0.00 3.79
1477 1564 5.175126 ACGCGTAACTTATGTATTGATGCTC 59.825 40.000 11.67 0.00 0.00 4.26
1478 1565 5.599715 GCGTAACTTATGTATTGATGCTCG 58.400 41.667 0.00 0.00 0.00 5.03
1479 1566 5.175126 GCGTAACTTATGTATTGATGCTCGT 59.825 40.000 0.00 0.00 0.00 4.18
1480 1567 6.361481 GCGTAACTTATGTATTGATGCTCGTA 59.639 38.462 0.00 0.00 0.00 3.43
1481 1568 7.061905 GCGTAACTTATGTATTGATGCTCGTAT 59.938 37.037 0.00 0.00 0.00 3.06
1482 1569 9.550811 CGTAACTTATGTATTGATGCTCGTATA 57.449 33.333 0.00 0.00 0.00 1.47
1490 1577 9.702494 ATGTATTGATGCTCGTATATATCCATG 57.298 33.333 0.00 0.00 0.00 3.66
1491 1578 8.695456 TGTATTGATGCTCGTATATATCCATGT 58.305 33.333 0.00 0.00 0.00 3.21
1494 1581 7.277174 TGATGCTCGTATATATCCATGTAGG 57.723 40.000 0.00 0.00 39.47 3.18
1509 1596 4.537135 ATGTAGGACATGTCGTCTTGTT 57.463 40.909 23.41 4.32 44.70 2.83
1510 1597 3.909430 TGTAGGACATGTCGTCTTGTTC 58.091 45.455 23.41 5.41 44.70 3.18
1511 1598 3.572682 TGTAGGACATGTCGTCTTGTTCT 59.427 43.478 23.41 12.37 44.70 3.01
1512 1599 3.753294 AGGACATGTCGTCTTGTTCTT 57.247 42.857 19.33 0.00 44.70 2.52
1513 1600 3.393800 AGGACATGTCGTCTTGTTCTTG 58.606 45.455 19.33 0.00 44.70 3.02
1514 1601 3.131396 GGACATGTCGTCTTGTTCTTGT 58.869 45.455 19.33 0.00 44.70 3.16
1515 1602 4.038763 AGGACATGTCGTCTTGTTCTTGTA 59.961 41.667 19.33 0.00 44.70 2.41
1516 1603 4.748102 GGACATGTCGTCTTGTTCTTGTAA 59.252 41.667 19.33 0.00 44.70 2.41
1517 1604 5.408604 GGACATGTCGTCTTGTTCTTGTAAT 59.591 40.000 19.33 0.00 44.70 1.89
1518 1605 6.588756 GGACATGTCGTCTTGTTCTTGTAATA 59.411 38.462 19.33 0.00 44.70 0.98
1519 1606 7.277981 GGACATGTCGTCTTGTTCTTGTAATAT 59.722 37.037 19.33 0.00 44.70 1.28
1520 1607 8.547967 ACATGTCGTCTTGTTCTTGTAATATT 57.452 30.769 0.00 0.00 0.00 1.28
1521 1608 8.656849 ACATGTCGTCTTGTTCTTGTAATATTC 58.343 33.333 0.00 0.00 0.00 1.75
1522 1609 8.873830 CATGTCGTCTTGTTCTTGTAATATTCT 58.126 33.333 0.00 0.00 0.00 2.40
1523 1610 8.462143 TGTCGTCTTGTTCTTGTAATATTCTC 57.538 34.615 0.00 0.00 0.00 2.87
1524 1611 7.544566 TGTCGTCTTGTTCTTGTAATATTCTCC 59.455 37.037 0.00 0.00 0.00 3.71
1525 1612 6.750501 TCGTCTTGTTCTTGTAATATTCTCCG 59.249 38.462 0.00 0.00 0.00 4.63
1526 1613 6.530534 CGTCTTGTTCTTGTAATATTCTCCGT 59.469 38.462 0.00 0.00 0.00 4.69
1527 1614 7.253684 CGTCTTGTTCTTGTAATATTCTCCGTC 60.254 40.741 0.00 0.00 0.00 4.79
1528 1615 7.544566 GTCTTGTTCTTGTAATATTCTCCGTCA 59.455 37.037 0.00 0.00 0.00 4.35
1529 1616 8.258007 TCTTGTTCTTGTAATATTCTCCGTCAT 58.742 33.333 0.00 0.00 0.00 3.06
1530 1617 9.529325 CTTGTTCTTGTAATATTCTCCGTCATA 57.471 33.333 0.00 0.00 0.00 2.15
1531 1618 9.529325 TTGTTCTTGTAATATTCTCCGTCATAG 57.471 33.333 0.00 0.00 0.00 2.23
1532 1619 8.692710 TGTTCTTGTAATATTCTCCGTCATAGT 58.307 33.333 0.00 0.00 0.00 2.12
1542 1629 6.417191 TTCTCCGTCATAGTAAAATTGTGC 57.583 37.500 0.00 0.00 0.00 4.57
1543 1630 4.873827 TCTCCGTCATAGTAAAATTGTGCC 59.126 41.667 0.00 0.00 0.00 5.01
1544 1631 4.839121 TCCGTCATAGTAAAATTGTGCCT 58.161 39.130 0.00 0.00 0.00 4.75
1545 1632 5.250200 TCCGTCATAGTAAAATTGTGCCTT 58.750 37.500 0.00 0.00 0.00 4.35
1546 1633 5.353123 TCCGTCATAGTAAAATTGTGCCTTC 59.647 40.000 0.00 0.00 0.00 3.46
1547 1634 5.123186 CCGTCATAGTAAAATTGTGCCTTCA 59.877 40.000 0.00 0.00 0.00 3.02
1548 1635 6.021596 CGTCATAGTAAAATTGTGCCTTCAC 58.978 40.000 0.00 0.00 43.40 3.18
1549 1636 6.021596 GTCATAGTAAAATTGTGCCTTCACG 58.978 40.000 0.00 0.00 46.01 4.35
1550 1637 3.282831 AGTAAAATTGTGCCTTCACGC 57.717 42.857 0.00 0.00 46.01 5.34
1551 1638 2.621055 AGTAAAATTGTGCCTTCACGCA 59.379 40.909 0.00 0.00 46.01 5.24
1552 1639 2.818130 AAAATTGTGCCTTCACGCAT 57.182 40.000 0.00 0.00 46.01 4.73
1553 1640 3.932545 AAAATTGTGCCTTCACGCATA 57.067 38.095 0.00 0.00 46.01 3.14
1554 1641 4.454728 AAAATTGTGCCTTCACGCATAT 57.545 36.364 0.00 0.00 46.01 1.78
1555 1642 3.425577 AATTGTGCCTTCACGCATATG 57.574 42.857 0.00 0.00 46.01 1.78
1556 1643 1.819928 TTGTGCCTTCACGCATATGT 58.180 45.000 4.29 0.00 46.01 2.29
1557 1644 1.085893 TGTGCCTTCACGCATATGTG 58.914 50.000 14.72 14.72 46.01 3.21
1558 1645 0.378257 GTGCCTTCACGCATATGTGG 59.622 55.000 19.94 9.36 41.70 4.17
1559 1646 0.035534 TGCCTTCACGCATATGTGGT 60.036 50.000 19.94 8.31 40.31 4.16
1560 1647 1.094785 GCCTTCACGCATATGTGGTT 58.905 50.000 19.94 0.00 40.31 3.67
1561 1648 1.472480 GCCTTCACGCATATGTGGTTT 59.528 47.619 19.94 0.00 40.31 3.27
1562 1649 2.094752 GCCTTCACGCATATGTGGTTTT 60.095 45.455 19.94 0.00 40.31 2.43
1563 1650 3.613910 GCCTTCACGCATATGTGGTTTTT 60.614 43.478 19.94 0.00 40.31 1.94
1564 1651 4.165779 CCTTCACGCATATGTGGTTTTTC 58.834 43.478 19.94 0.00 40.31 2.29
1565 1652 4.082787 CCTTCACGCATATGTGGTTTTTCT 60.083 41.667 19.94 0.00 40.31 2.52
1566 1653 4.678509 TCACGCATATGTGGTTTTTCTC 57.321 40.909 19.94 0.00 40.31 2.87
1567 1654 3.438781 TCACGCATATGTGGTTTTTCTCC 59.561 43.478 19.94 0.00 40.31 3.71
1568 1655 2.418628 ACGCATATGTGGTTTTTCTCCG 59.581 45.455 19.94 5.46 0.00 4.63
1569 1656 2.791158 CGCATATGTGGTTTTTCTCCGC 60.791 50.000 8.46 0.00 36.18 5.54
1573 1660 0.958091 TGTGGTTTTTCTCCGCATGG 59.042 50.000 0.00 0.00 40.01 3.66
1574 1661 0.243636 GTGGTTTTTCTCCGCATGGG 59.756 55.000 2.06 2.06 35.75 4.00
1575 1662 0.178975 TGGTTTTTCTCCGCATGGGT 60.179 50.000 9.14 0.00 37.00 4.51
1576 1663 0.966179 GGTTTTTCTCCGCATGGGTT 59.034 50.000 9.14 0.00 37.00 4.11
1577 1664 1.343142 GGTTTTTCTCCGCATGGGTTT 59.657 47.619 9.14 0.00 37.00 3.27
1578 1665 2.224185 GGTTTTTCTCCGCATGGGTTTT 60.224 45.455 9.14 0.00 37.00 2.43
1579 1666 3.057019 GTTTTTCTCCGCATGGGTTTTC 58.943 45.455 9.14 0.00 37.00 2.29
1580 1667 1.253100 TTTCTCCGCATGGGTTTTCC 58.747 50.000 9.14 0.00 37.00 3.13
1596 1683 1.291109 TTCCACGTATGGGTCCCATT 58.709 50.000 28.73 8.33 42.23 3.16
1597 1684 0.834612 TCCACGTATGGGTCCCATTC 59.165 55.000 28.73 21.82 42.23 2.67
1598 1685 0.837272 CCACGTATGGGTCCCATTCT 59.163 55.000 28.73 8.33 42.23 2.40
1599 1686 1.211949 CCACGTATGGGTCCCATTCTT 59.788 52.381 28.73 14.46 42.23 2.52
1600 1687 2.288666 CACGTATGGGTCCCATTCTTG 58.711 52.381 28.73 21.75 42.23 3.02
1601 1688 1.913419 ACGTATGGGTCCCATTCTTGT 59.087 47.619 28.73 17.70 42.23 3.16
1602 1689 2.307686 ACGTATGGGTCCCATTCTTGTT 59.692 45.455 28.73 5.90 42.23 2.83
1603 1690 3.245122 ACGTATGGGTCCCATTCTTGTTT 60.245 43.478 28.73 5.09 42.23 2.83
1604 1691 3.761752 CGTATGGGTCCCATTCTTGTTTT 59.238 43.478 28.73 4.30 42.23 2.43
1605 1692 4.380444 CGTATGGGTCCCATTCTTGTTTTG 60.380 45.833 28.73 5.43 42.23 2.44
1606 1693 3.039252 TGGGTCCCATTCTTGTTTTGT 57.961 42.857 6.47 0.00 0.00 2.83
1607 1694 2.697751 TGGGTCCCATTCTTGTTTTGTG 59.302 45.455 6.47 0.00 0.00 3.33
1608 1695 2.698274 GGGTCCCATTCTTGTTTTGTGT 59.302 45.455 1.78 0.00 0.00 3.72
1609 1696 3.492482 GGGTCCCATTCTTGTTTTGTGTG 60.492 47.826 1.78 0.00 0.00 3.82
1610 1697 3.123050 GTCCCATTCTTGTTTTGTGTGC 58.877 45.455 0.00 0.00 0.00 4.57
1611 1698 2.102252 TCCCATTCTTGTTTTGTGTGCC 59.898 45.455 0.00 0.00 0.00 5.01
1612 1699 2.158986 CCCATTCTTGTTTTGTGTGCCA 60.159 45.455 0.00 0.00 0.00 4.92
1613 1700 2.865551 CCATTCTTGTTTTGTGTGCCAC 59.134 45.455 0.00 0.00 34.56 5.01
1614 1701 3.519579 CATTCTTGTTTTGTGTGCCACA 58.480 40.909 0.00 0.00 43.02 4.17
1615 1702 2.937469 TCTTGTTTTGTGTGCCACAG 57.063 45.000 0.00 0.00 45.39 3.66
1616 1703 2.166829 TCTTGTTTTGTGTGCCACAGT 58.833 42.857 0.00 0.00 45.39 3.55
1617 1704 2.560542 TCTTGTTTTGTGTGCCACAGTT 59.439 40.909 0.00 0.00 45.39 3.16
1618 1705 3.006323 TCTTGTTTTGTGTGCCACAGTTT 59.994 39.130 0.00 0.00 45.39 2.66
1619 1706 4.218635 TCTTGTTTTGTGTGCCACAGTTTA 59.781 37.500 0.00 0.00 45.39 2.01
1620 1707 4.521130 TGTTTTGTGTGCCACAGTTTAA 57.479 36.364 0.00 0.00 45.39 1.52
1621 1708 4.883083 TGTTTTGTGTGCCACAGTTTAAA 58.117 34.783 0.00 0.00 45.39 1.52
1622 1709 4.686554 TGTTTTGTGTGCCACAGTTTAAAC 59.313 37.500 10.47 10.47 45.39 2.01
1623 1710 4.792521 TTTGTGTGCCACAGTTTAAACT 57.207 36.364 15.22 15.22 45.39 2.66
1624 1711 4.364415 TTGTGTGCCACAGTTTAAACTC 57.636 40.909 18.00 7.75 45.39 3.01
1625 1712 3.348119 TGTGTGCCACAGTTTAAACTCA 58.652 40.909 18.00 10.26 39.62 3.41
1626 1713 3.127895 TGTGTGCCACAGTTTAAACTCAC 59.872 43.478 22.00 22.00 39.62 3.51
1627 1714 3.127895 GTGTGCCACAGTTTAAACTCACA 59.872 43.478 25.24 25.24 37.56 3.58
1628 1715 3.759086 TGTGCCACAGTTTAAACTCACAA 59.241 39.130 26.14 15.88 37.21 3.33
1629 1716 4.142491 TGTGCCACAGTTTAAACTCACAAG 60.142 41.667 26.14 15.78 37.21 3.16
1630 1717 4.095782 GTGCCACAGTTTAAACTCACAAGA 59.904 41.667 23.07 5.96 37.08 3.02
1631 1718 4.702612 TGCCACAGTTTAAACTCACAAGAA 59.297 37.500 18.00 0.00 37.08 2.52
1632 1719 5.359576 TGCCACAGTTTAAACTCACAAGAAT 59.640 36.000 18.00 0.00 37.08 2.40
1633 1720 6.127479 TGCCACAGTTTAAACTCACAAGAATT 60.127 34.615 18.00 0.00 37.08 2.17
1634 1721 6.417930 GCCACAGTTTAAACTCACAAGAATTC 59.582 38.462 18.00 0.00 37.08 2.17
1635 1722 7.682021 GCCACAGTTTAAACTCACAAGAATTCT 60.682 37.037 18.00 0.88 37.08 2.40
1636 1723 8.836413 CCACAGTTTAAACTCACAAGAATTCTA 58.164 33.333 18.00 0.00 37.08 2.10
1639 1726 9.831737 CAGTTTAAACTCACAAGAATTCTATGG 57.168 33.333 18.00 4.35 37.08 2.74
1640 1727 9.574516 AGTTTAAACTCACAAGAATTCTATGGT 57.425 29.630 15.22 5.01 32.86 3.55
1641 1728 9.612620 GTTTAAACTCACAAGAATTCTATGGTG 57.387 33.333 20.47 20.47 0.00 4.17
1642 1729 9.567776 TTTAAACTCACAAGAATTCTATGGTGA 57.432 29.630 24.37 24.37 33.59 4.02
1643 1730 7.678947 AAACTCACAAGAATTCTATGGTGAG 57.321 36.000 34.84 34.84 45.28 3.51
1644 1731 6.611613 ACTCACAAGAATTCTATGGTGAGA 57.388 37.500 38.57 25.15 44.08 3.27
1645 1732 7.009179 ACTCACAAGAATTCTATGGTGAGAA 57.991 36.000 38.57 21.33 44.08 2.87
1646 1733 7.453393 ACTCACAAGAATTCTATGGTGAGAAA 58.547 34.615 38.57 21.11 44.08 2.52
1647 1734 8.105829 ACTCACAAGAATTCTATGGTGAGAAAT 58.894 33.333 38.57 27.04 44.08 2.17
1648 1735 8.498054 TCACAAGAATTCTATGGTGAGAAATC 57.502 34.615 23.15 0.00 38.89 2.17
1649 1736 7.278646 TCACAAGAATTCTATGGTGAGAAATCG 59.721 37.037 23.15 6.09 39.41 3.34
1650 1737 6.540189 ACAAGAATTCTATGGTGAGAAATCGG 59.460 38.462 8.75 0.00 39.41 4.18
1651 1738 5.615289 AGAATTCTATGGTGAGAAATCGGG 58.385 41.667 6.06 0.00 39.41 5.14
1652 1739 5.131142 AGAATTCTATGGTGAGAAATCGGGT 59.869 40.000 6.06 0.00 39.41 5.28
1653 1740 4.402056 TTCTATGGTGAGAAATCGGGTC 57.598 45.455 0.00 0.00 32.46 4.46
1654 1741 3.371034 TCTATGGTGAGAAATCGGGTCA 58.629 45.455 0.00 0.00 0.00 4.02
1655 1742 3.772572 TCTATGGTGAGAAATCGGGTCAA 59.227 43.478 0.00 0.00 0.00 3.18
1656 1743 3.652057 ATGGTGAGAAATCGGGTCAAT 57.348 42.857 0.00 0.00 0.00 2.57
1657 1744 2.710377 TGGTGAGAAATCGGGTCAATG 58.290 47.619 0.00 0.00 0.00 2.82
1658 1745 1.401905 GGTGAGAAATCGGGTCAATGC 59.598 52.381 0.00 0.00 0.00 3.56
1659 1746 2.083774 GTGAGAAATCGGGTCAATGCA 58.916 47.619 0.00 0.00 0.00 3.96
1660 1747 2.684881 GTGAGAAATCGGGTCAATGCAT 59.315 45.455 0.00 0.00 0.00 3.96
1661 1748 3.129287 GTGAGAAATCGGGTCAATGCATT 59.871 43.478 5.99 5.99 0.00 3.56
1662 1749 4.335315 GTGAGAAATCGGGTCAATGCATTA 59.665 41.667 12.53 0.00 0.00 1.90
1663 1750 4.576053 TGAGAAATCGGGTCAATGCATTAG 59.424 41.667 12.53 7.05 0.00 1.73
1664 1751 3.885297 AGAAATCGGGTCAATGCATTAGG 59.115 43.478 12.53 0.46 0.00 2.69
1665 1752 2.276732 ATCGGGTCAATGCATTAGGG 57.723 50.000 12.53 0.00 0.00 3.53
1666 1753 0.465460 TCGGGTCAATGCATTAGGGC 60.465 55.000 12.53 1.83 0.00 5.19
1675 1762 1.544724 TGCATTAGGGCAACTCCAAC 58.455 50.000 0.00 0.00 41.65 3.77
1676 1763 1.202989 TGCATTAGGGCAACTCCAACA 60.203 47.619 0.00 0.00 41.65 3.33
1677 1764 2.102578 GCATTAGGGCAACTCCAACAT 58.897 47.619 0.00 0.00 36.21 2.71
1678 1765 3.287222 GCATTAGGGCAACTCCAACATA 58.713 45.455 0.00 0.00 36.21 2.29
1679 1766 3.066760 GCATTAGGGCAACTCCAACATAC 59.933 47.826 0.00 0.00 36.21 2.39
1680 1767 4.269183 CATTAGGGCAACTCCAACATACA 58.731 43.478 0.00 0.00 36.21 2.29
1681 1768 2.200373 AGGGCAACTCCAACATACAC 57.800 50.000 0.00 0.00 36.21 2.90
1682 1769 1.173913 GGGCAACTCCAACATACACC 58.826 55.000 0.00 0.00 36.21 4.16
1683 1770 0.802494 GGCAACTCCAACATACACCG 59.198 55.000 0.00 0.00 34.01 4.94
1684 1771 1.609580 GGCAACTCCAACATACACCGA 60.610 52.381 0.00 0.00 34.01 4.69
1685 1772 1.463444 GCAACTCCAACATACACCGAC 59.537 52.381 0.00 0.00 0.00 4.79
1686 1773 2.073816 CAACTCCAACATACACCGACC 58.926 52.381 0.00 0.00 0.00 4.79
1687 1774 0.611714 ACTCCAACATACACCGACCC 59.388 55.000 0.00 0.00 0.00 4.46
1688 1775 0.611200 CTCCAACATACACCGACCCA 59.389 55.000 0.00 0.00 0.00 4.51
1689 1776 1.002659 CTCCAACATACACCGACCCAA 59.997 52.381 0.00 0.00 0.00 4.12
1690 1777 1.420514 TCCAACATACACCGACCCAAA 59.579 47.619 0.00 0.00 0.00 3.28
1691 1778 1.538075 CCAACATACACCGACCCAAAC 59.462 52.381 0.00 0.00 0.00 2.93
1692 1779 1.195900 CAACATACACCGACCCAAACG 59.804 52.381 0.00 0.00 0.00 3.60
1699 1786 3.573558 CGACCCAAACGGACATGG 58.426 61.111 0.00 0.00 36.42 3.66
1700 1787 1.004320 CGACCCAAACGGACATGGA 60.004 57.895 0.00 0.00 39.12 3.41
1701 1788 0.392461 CGACCCAAACGGACATGGAT 60.392 55.000 0.00 0.00 39.12 3.41
1702 1789 1.834188 GACCCAAACGGACATGGATT 58.166 50.000 0.00 0.00 39.12 3.01
1703 1790 2.167662 GACCCAAACGGACATGGATTT 58.832 47.619 0.00 0.00 39.12 2.17
1704 1791 2.560981 GACCCAAACGGACATGGATTTT 59.439 45.455 0.00 0.00 39.12 1.82
1705 1792 2.298729 ACCCAAACGGACATGGATTTTG 59.701 45.455 0.00 1.31 39.12 2.44
1706 1793 2.298729 CCCAAACGGACATGGATTTTGT 59.701 45.455 0.00 0.00 39.12 2.83
1707 1794 3.508012 CCCAAACGGACATGGATTTTGTA 59.492 43.478 0.00 0.00 39.12 2.41
1708 1795 4.481463 CCAAACGGACATGGATTTTGTAC 58.519 43.478 0.00 0.00 39.12 2.90
1712 1799 3.998522 CGGACATGGATTTTGTACGTTC 58.001 45.455 0.00 0.00 44.50 3.95
1713 1800 3.682858 CGGACATGGATTTTGTACGTTCT 59.317 43.478 0.00 0.00 44.50 3.01
1714 1801 4.153475 CGGACATGGATTTTGTACGTTCTT 59.847 41.667 0.00 0.00 44.50 2.52
1715 1802 5.334569 CGGACATGGATTTTGTACGTTCTTT 60.335 40.000 0.00 0.00 44.50 2.52
1716 1803 5.856455 GGACATGGATTTTGTACGTTCTTTG 59.144 40.000 0.00 0.00 0.00 2.77
1717 1804 6.385649 ACATGGATTTTGTACGTTCTTTGT 57.614 33.333 0.00 0.00 0.00 2.83
1718 1805 6.435428 ACATGGATTTTGTACGTTCTTTGTC 58.565 36.000 0.00 0.00 0.00 3.18
1719 1806 6.262273 ACATGGATTTTGTACGTTCTTTGTCT 59.738 34.615 0.00 0.00 0.00 3.41
1720 1807 7.442969 ACATGGATTTTGTACGTTCTTTGTCTA 59.557 33.333 0.00 0.00 0.00 2.59
1721 1808 7.972832 TGGATTTTGTACGTTCTTTGTCTAT 57.027 32.000 0.00 0.00 0.00 1.98
1722 1809 8.385898 TGGATTTTGTACGTTCTTTGTCTATT 57.614 30.769 0.00 0.00 0.00 1.73
1723 1810 8.500773 TGGATTTTGTACGTTCTTTGTCTATTC 58.499 33.333 0.00 0.00 0.00 1.75
1724 1811 8.500773 GGATTTTGTACGTTCTTTGTCTATTCA 58.499 33.333 0.00 0.00 0.00 2.57
1725 1812 9.530129 GATTTTGTACGTTCTTTGTCTATTCAG 57.470 33.333 0.00 0.00 0.00 3.02
1733 1820 6.398918 GTTCTTTGTCTATTCAGCAGACCTA 58.601 40.000 0.38 0.00 41.46 3.08
1738 1825 3.447586 GTCTATTCAGCAGACCTACCACA 59.552 47.826 0.00 0.00 37.11 4.17
1752 1839 0.250209 ACCACAGTTCAGCAGAGCAG 60.250 55.000 0.00 0.00 0.00 4.24
1754 1841 1.001293 CCACAGTTCAGCAGAGCAGTA 59.999 52.381 0.00 0.00 0.00 2.74
1790 1877 1.342474 TGCCACTTCTGGAAAAACCCA 60.342 47.619 0.00 0.00 40.55 4.51
1824 1911 4.374702 GCACACAGTTGCCGAGCG 62.375 66.667 0.00 0.00 36.42 5.03
1828 1915 2.029288 CACAGTTGCCGAGCGATGT 61.029 57.895 0.00 0.00 0.00 3.06
1829 1916 1.738099 ACAGTTGCCGAGCGATGTC 60.738 57.895 0.00 0.00 0.00 3.06
1862 1949 0.320683 TCTTCAGTGCATCCACCACG 60.321 55.000 0.00 0.00 43.09 4.94
1864 1951 2.032528 CAGTGCATCCACCACGGT 59.967 61.111 0.00 0.00 43.09 4.83
1906 1993 0.324943 GCCACCTTCTGGAACTGCTA 59.675 55.000 0.00 0.00 43.95 3.49
1916 2003 0.391793 GGAACTGCTACTGGACTGGC 60.392 60.000 0.00 0.00 0.00 4.85
1918 2005 0.610687 AACTGCTACTGGACTGGCTC 59.389 55.000 0.00 0.00 0.00 4.70
1919 2006 1.261238 ACTGCTACTGGACTGGCTCC 61.261 60.000 0.00 0.00 39.97 4.70
1931 2020 1.152860 TGGCTCCGGCACTTTGAAA 60.153 52.632 0.00 0.00 40.87 2.69
1943 2032 3.826729 GCACTTTGAAAATGGACTACCCT 59.173 43.478 0.00 0.00 35.38 4.34
1945 2034 4.218417 CACTTTGAAAATGGACTACCCTGG 59.782 45.833 0.00 0.00 35.38 4.45
1947 2036 1.638589 TGAAAATGGACTACCCTGGGG 59.361 52.381 18.88 7.87 42.03 4.96
1967 2056 4.526970 GGGTATTCAAGCATTCCAGAAGA 58.473 43.478 0.00 0.00 0.00 2.87
1974 2063 5.132502 TCAAGCATTCCAGAAGAAAGAACA 58.867 37.500 0.00 0.00 38.21 3.18
1978 2067 4.083057 GCATTCCAGAAGAAAGAACAGGAC 60.083 45.833 0.00 0.00 38.21 3.85
1982 2071 4.899457 TCCAGAAGAAAGAACAGGACAGTA 59.101 41.667 0.00 0.00 0.00 2.74
1987 2076 4.390264 AGAAAGAACAGGACAGTAAAGGC 58.610 43.478 0.00 0.00 0.00 4.35
1991 2080 0.764890 ACAGGACAGTAAAGGCAGCA 59.235 50.000 0.00 0.00 0.00 4.41
1998 2087 2.221169 CAGTAAAGGCAGCACTGACAA 58.779 47.619 6.23 0.00 42.32 3.18
2001 2090 3.503748 AGTAAAGGCAGCACTGACAAATC 59.496 43.478 6.23 0.00 42.32 2.17
2002 2091 1.985473 AAGGCAGCACTGACAAATCA 58.015 45.000 6.23 0.00 42.32 2.57
2014 2105 1.525197 GACAAATCACACTTGTCGCGA 59.475 47.619 3.71 3.71 42.25 5.87
2019 2110 1.698165 TCACACTTGTCGCGAATCTC 58.302 50.000 12.06 0.00 0.00 2.75
2042 2154 1.211212 CCATGGCAAGGAGATCAGACA 59.789 52.381 1.66 0.00 0.00 3.41
2046 2158 1.654317 GCAAGGAGATCAGACAGCAG 58.346 55.000 0.00 0.00 0.00 4.24
2047 2159 1.654317 CAAGGAGATCAGACAGCAGC 58.346 55.000 0.00 0.00 0.00 5.25
2063 2175 3.407657 GCGATGGCTGCTCTCAAG 58.592 61.111 0.00 0.00 35.83 3.02
2073 2186 2.486982 GCTGCTCTCAAGAAATCTGCAA 59.513 45.455 0.00 0.00 0.00 4.08
2079 2192 5.679734 TCTCAAGAAATCTGCAACTCAAC 57.320 39.130 0.00 0.00 0.00 3.18
2082 2195 4.212004 TCAAGAAATCTGCAACTCAACGAG 59.788 41.667 0.00 0.00 35.52 4.18
2087 2200 2.490262 CTGCAACTCAACGAGCAGCG 62.490 60.000 0.00 0.00 46.51 5.18
2089 2202 2.029666 AACTCAACGAGCAGCGCT 59.970 55.556 2.64 2.64 46.04 5.92
2091 2204 3.485431 CTCAACGAGCAGCGCTGG 61.485 66.667 36.47 23.19 46.04 4.85
2103 2216 0.537143 AGCGCTGGGACACAATCAAA 60.537 50.000 10.39 0.00 0.00 2.69
2106 2219 1.733389 CGCTGGGACACAATCAAATGC 60.733 52.381 0.00 0.00 0.00 3.56
2118 2231 4.250464 CAATCAAATGCAACCATGAAGCT 58.750 39.130 0.00 0.00 0.00 3.74
2120 2233 4.339872 TCAAATGCAACCATGAAGCTTT 57.660 36.364 0.00 0.00 0.00 3.51
2126 2239 2.672195 GCAACCATGAAGCTTTAGGCAC 60.672 50.000 0.00 0.00 44.79 5.01
2127 2240 1.839424 ACCATGAAGCTTTAGGCACC 58.161 50.000 0.00 0.00 44.79 5.01
2130 2243 2.165030 CCATGAAGCTTTAGGCACCTTG 59.835 50.000 0.00 0.00 44.79 3.61
2138 2251 5.159721 GCTTTAGGCACCTTGTCCACAAG 62.160 52.174 11.86 11.86 45.11 3.16
2145 2258 1.302033 CTTGTCCACAAGCTCGGCT 60.302 57.895 6.52 0.00 45.59 5.52
2163 2276 6.279513 TCGGCTTACAAATTCCAATTTCAT 57.720 33.333 0.00 0.00 36.52 2.57
2166 2279 6.172630 GGCTTACAAATTCCAATTTCATGGT 58.827 36.000 0.00 0.00 41.46 3.55
2176 2289 4.400251 TCCAATTTCATGGTCTGATCAAGC 59.600 41.667 0.00 0.00 41.46 4.01
2177 2290 4.348656 CAATTTCATGGTCTGATCAAGCG 58.651 43.478 0.00 0.00 32.72 4.68
2184 2297 3.067106 TGGTCTGATCAAGCGAAGTTTC 58.933 45.455 0.00 0.00 0.00 2.78
2205 2318 1.032014 GAAAACTGTTCTGGCAGGCA 58.968 50.000 15.73 12.95 40.59 4.75
2227 2340 2.684843 GCACCTGCTCGCCTCAAAG 61.685 63.158 0.00 0.00 38.21 2.77
2228 2341 1.302033 CACCTGCTCGCCTCAAAGT 60.302 57.895 0.00 0.00 0.00 2.66
2229 2342 0.886490 CACCTGCTCGCCTCAAAGTT 60.886 55.000 0.00 0.00 0.00 2.66
2235 2348 2.165437 TGCTCGCCTCAAAGTTTTTGTT 59.835 40.909 1.92 0.00 0.00 2.83
2237 2350 3.242944 GCTCGCCTCAAAGTTTTTGTTTC 59.757 43.478 1.92 0.00 0.00 2.78
2239 2352 2.034926 CGCCTCAAAGTTTTTGTTTCGC 60.035 45.455 1.92 0.28 0.00 4.70
2242 2355 4.173256 CCTCAAAGTTTTTGTTTCGCTGT 58.827 39.130 1.92 0.00 0.00 4.40
2251 2364 0.525242 TGTTTCGCTGTTGCACAAGC 60.525 50.000 9.34 9.34 39.64 4.01
2252 2365 1.065600 TTTCGCTGTTGCACAAGCC 59.934 52.632 12.91 0.00 41.13 4.35
2253 2366 1.661498 TTTCGCTGTTGCACAAGCCA 61.661 50.000 12.91 0.00 41.13 4.75
2254 2367 2.335052 TTCGCTGTTGCACAAGCCAC 62.335 55.000 12.91 0.00 41.13 5.01
2255 2368 2.806929 GCTGTTGCACAAGCCACA 59.193 55.556 8.35 0.00 43.30 4.17
2257 2370 0.872881 GCTGTTGCACAAGCCACAAG 60.873 55.000 8.35 0.00 44.60 3.16
2258 2371 0.740149 CTGTTGCACAAGCCACAAGA 59.260 50.000 0.00 0.00 44.60 3.02
2260 2373 1.135141 TGTTGCACAAGCCACAAGAAC 60.135 47.619 0.00 0.00 42.66 3.01
2261 2374 1.135141 GTTGCACAAGCCACAAGAACA 60.135 47.619 0.00 0.00 41.13 3.18
2262 2375 1.180907 TGCACAAGCCACAAGAACAA 58.819 45.000 0.00 0.00 41.13 2.83
2263 2376 1.547820 TGCACAAGCCACAAGAACAAA 59.452 42.857 0.00 0.00 41.13 2.83
2264 2377 1.926510 GCACAAGCCACAAGAACAAAC 59.073 47.619 0.00 0.00 33.58 2.93
2265 2378 2.417243 GCACAAGCCACAAGAACAAACT 60.417 45.455 0.00 0.00 33.58 2.66
2266 2379 3.438360 CACAAGCCACAAGAACAAACTC 58.562 45.455 0.00 0.00 0.00 3.01
2267 2380 3.129287 CACAAGCCACAAGAACAAACTCT 59.871 43.478 0.00 0.00 0.00 3.24
2278 2391 6.210796 CAAGAACAAACTCTTGCAATGATCA 58.789 36.000 0.00 0.00 44.24 2.92
2279 2392 6.395426 AGAACAAACTCTTGCAATGATCAA 57.605 33.333 0.00 0.00 35.84 2.57
2293 2406 5.873712 GCAATGATCAACTTCAGAGAAGAGA 59.126 40.000 13.23 10.38 0.00 3.10
2294 2407 6.539464 GCAATGATCAACTTCAGAGAAGAGAT 59.461 38.462 13.23 13.93 0.00 2.75
2295 2408 7.066043 GCAATGATCAACTTCAGAGAAGAGATT 59.934 37.037 13.23 0.00 0.00 2.40
2296 2409 8.391859 CAATGATCAACTTCAGAGAAGAGATTG 58.608 37.037 13.23 7.73 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.951037 CCGTAGCTCTATGCCTCTATCAT 59.049 47.826 0.00 0.00 44.23 2.45
12 13 0.242555 GCTCCGTAGCTCTATGCCTC 59.757 60.000 0.00 0.00 45.85 4.70
28 29 3.557595 CCAGATTAGTCGGTTTCATGCTC 59.442 47.826 0.00 0.00 0.00 4.26
79 86 7.065324 GGTCGAAAATATTGCCGAATGGATATA 59.935 37.037 12.21 0.00 37.49 0.86
89 96 3.606346 GTGTTTGGTCGAAAATATTGCCG 59.394 43.478 0.00 0.00 0.00 5.69
101 108 1.410882 ACAAATTGGGGTGTTTGGTCG 59.589 47.619 0.00 0.00 39.12 4.79
109 116 5.982890 AATACTCTCAACAAATTGGGGTG 57.017 39.130 0.00 0.00 36.88 4.61
110 117 5.183140 CGAAATACTCTCAACAAATTGGGGT 59.817 40.000 0.00 0.00 36.88 4.95
111 118 5.393027 CCGAAATACTCTCAACAAATTGGGG 60.393 44.000 0.00 0.00 36.88 4.96
112 119 5.640732 CCGAAATACTCTCAACAAATTGGG 58.359 41.667 0.00 0.00 37.69 4.12
113 120 5.095490 GCCGAAATACTCTCAACAAATTGG 58.905 41.667 0.00 0.00 36.39 3.16
186 193 2.095212 TCGATTCCGTCATCCATCGATC 60.095 50.000 0.00 0.00 41.90 3.69
187 194 1.886542 TCGATTCCGTCATCCATCGAT 59.113 47.619 0.00 0.00 41.90 3.59
261 326 3.347411 GGTGAGTCAGCGTGATACC 57.653 57.895 6.57 0.00 0.00 2.73
305 370 1.914634 CGTCTTCGGATCTGTTCAGG 58.085 55.000 0.42 0.00 0.00 3.86
431 501 4.273480 GTGTGTACGTACGTATAGGGTGAT 59.727 45.833 29.05 2.13 32.82 3.06
456 528 0.318784 GACACGCGGACTTCAAGTCT 60.319 55.000 17.22 0.00 44.46 3.24
609 687 5.132648 AGACCATGTTTATTCTATCCCAGCA 59.867 40.000 0.00 0.00 0.00 4.41
628 706 1.681166 GGGCTGTAGACGTAGAGACCA 60.681 57.143 2.49 0.00 45.69 4.02
669 747 2.163815 CTGGTAAAGGTCGTCTGATCGT 59.836 50.000 0.00 0.00 0.00 3.73
670 748 2.798680 CTGGTAAAGGTCGTCTGATCG 58.201 52.381 0.00 0.00 0.00 3.69
671 749 2.094182 TGCTGGTAAAGGTCGTCTGATC 60.094 50.000 0.00 0.00 0.00 2.92
672 750 1.899814 TGCTGGTAAAGGTCGTCTGAT 59.100 47.619 0.00 0.00 0.00 2.90
673 751 1.334160 TGCTGGTAAAGGTCGTCTGA 58.666 50.000 0.00 0.00 0.00 3.27
674 752 2.271800 GATGCTGGTAAAGGTCGTCTG 58.728 52.381 0.00 0.00 0.00 3.51
675 753 1.899814 TGATGCTGGTAAAGGTCGTCT 59.100 47.619 0.00 0.00 0.00 4.18
676 754 2.271800 CTGATGCTGGTAAAGGTCGTC 58.728 52.381 0.00 0.00 0.00 4.20
795 873 0.178975 CTAGACGGATGGGAGGAGCT 60.179 60.000 0.00 0.00 0.00 4.09
796 874 0.178987 TCTAGACGGATGGGAGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
797 875 1.611519 GTCTAGACGGATGGGAGGAG 58.388 60.000 7.22 0.00 0.00 3.69
798 876 3.823369 GTCTAGACGGATGGGAGGA 57.177 57.895 7.22 0.00 0.00 3.71
865 943 2.223572 GGCTTGTGAGTTGTGACCTTTG 60.224 50.000 0.00 0.00 0.00 2.77
913 998 1.549950 GGATCTCCAGCTAGCTAGGCT 60.550 57.143 18.86 15.84 41.07 4.58
965 1050 0.252927 ACCCTCCTCCTTTCTCTGGG 60.253 60.000 0.00 0.00 39.06 4.45
1041 1126 4.707768 ACCATCCCCGACGACCCA 62.708 66.667 0.00 0.00 0.00 4.51
1331 1416 3.197790 ATAGCTGCGCGCACAAGG 61.198 61.111 33.09 22.04 42.61 3.61
1332 1417 1.420641 TACATAGCTGCGCGCACAAG 61.421 55.000 33.09 22.45 42.61 3.16
1333 1418 1.446966 TACATAGCTGCGCGCACAA 60.447 52.632 33.09 18.78 42.61 3.33
1334 1419 2.164663 GTACATAGCTGCGCGCACA 61.165 57.895 33.09 18.83 42.61 4.57
1335 1420 1.490693 ATGTACATAGCTGCGCGCAC 61.491 55.000 33.09 25.79 42.61 5.34
1336 1421 1.227234 ATGTACATAGCTGCGCGCA 60.227 52.632 34.12 34.12 42.61 6.09
1337 1422 1.202568 CATGTACATAGCTGCGCGC 59.797 57.895 27.26 27.26 39.57 6.86
1430 1517 2.648613 AATCAACACCAACGCCCCCA 62.649 55.000 0.00 0.00 0.00 4.96
1449 1536 6.947903 TCAATACATAAGTTACGCGTTGAA 57.052 33.333 20.78 2.89 0.00 2.69
1464 1551 9.702494 CATGGATATATACGAGCATCAATACAT 57.298 33.333 0.00 0.00 33.17 2.29
1465 1552 8.695456 ACATGGATATATACGAGCATCAATACA 58.305 33.333 0.00 0.00 33.17 2.29
1468 1555 8.363390 CCTACATGGATATATACGAGCATCAAT 58.637 37.037 0.00 0.00 38.35 2.57
1469 1556 7.559897 TCCTACATGGATATATACGAGCATCAA 59.440 37.037 0.00 0.00 40.56 2.57
1470 1557 7.060421 TCCTACATGGATATATACGAGCATCA 58.940 38.462 0.00 0.00 40.56 3.07
1471 1558 7.511959 TCCTACATGGATATATACGAGCATC 57.488 40.000 0.00 0.00 40.56 3.91
1495 1582 8.547967 AATATTACAAGAACAAGACGACATGT 57.452 30.769 0.00 0.00 0.00 3.21
1496 1583 8.873830 AGAATATTACAAGAACAAGACGACATG 58.126 33.333 0.00 0.00 0.00 3.21
1497 1584 9.088512 GAGAATATTACAAGAACAAGACGACAT 57.911 33.333 0.00 0.00 0.00 3.06
1498 1585 7.544566 GGAGAATATTACAAGAACAAGACGACA 59.455 37.037 0.00 0.00 0.00 4.35
1499 1586 7.253684 CGGAGAATATTACAAGAACAAGACGAC 60.254 40.741 0.00 0.00 0.00 4.34
1500 1587 6.750501 CGGAGAATATTACAAGAACAAGACGA 59.249 38.462 0.00 0.00 0.00 4.20
1501 1588 6.530534 ACGGAGAATATTACAAGAACAAGACG 59.469 38.462 0.00 0.00 0.00 4.18
1502 1589 7.544566 TGACGGAGAATATTACAAGAACAAGAC 59.455 37.037 0.00 0.00 0.00 3.01
1503 1590 7.608153 TGACGGAGAATATTACAAGAACAAGA 58.392 34.615 0.00 0.00 0.00 3.02
1504 1591 7.827819 TGACGGAGAATATTACAAGAACAAG 57.172 36.000 0.00 0.00 0.00 3.16
1505 1592 9.529325 CTATGACGGAGAATATTACAAGAACAA 57.471 33.333 0.00 0.00 0.00 2.83
1506 1593 8.692710 ACTATGACGGAGAATATTACAAGAACA 58.307 33.333 0.00 0.00 0.00 3.18
1516 1603 8.774586 GCACAATTTTACTATGACGGAGAATAT 58.225 33.333 0.00 0.00 0.00 1.28
1517 1604 7.225931 GGCACAATTTTACTATGACGGAGAATA 59.774 37.037 0.00 0.00 0.00 1.75
1518 1605 6.038271 GGCACAATTTTACTATGACGGAGAAT 59.962 38.462 0.00 0.00 0.00 2.40
1519 1606 5.353123 GGCACAATTTTACTATGACGGAGAA 59.647 40.000 0.00 0.00 0.00 2.87
1520 1607 4.873827 GGCACAATTTTACTATGACGGAGA 59.126 41.667 0.00 0.00 0.00 3.71
1521 1608 4.876107 AGGCACAATTTTACTATGACGGAG 59.124 41.667 0.00 0.00 0.00 4.63
1522 1609 4.839121 AGGCACAATTTTACTATGACGGA 58.161 39.130 0.00 0.00 0.00 4.69
1523 1610 5.123186 TGAAGGCACAATTTTACTATGACGG 59.877 40.000 0.00 0.00 0.00 4.79
1524 1611 6.021596 GTGAAGGCACAATTTTACTATGACG 58.978 40.000 0.00 0.00 44.51 4.35
1525 1612 6.021596 CGTGAAGGCACAATTTTACTATGAC 58.978 40.000 0.00 0.00 45.41 3.06
1526 1613 5.391523 GCGTGAAGGCACAATTTTACTATGA 60.392 40.000 0.00 0.00 45.41 2.15
1527 1614 4.793216 GCGTGAAGGCACAATTTTACTATG 59.207 41.667 0.00 0.00 45.41 2.23
1528 1615 4.457603 TGCGTGAAGGCACAATTTTACTAT 59.542 37.500 0.00 0.00 45.41 2.12
1529 1616 3.815962 TGCGTGAAGGCACAATTTTACTA 59.184 39.130 0.00 0.00 45.41 1.82
1530 1617 2.621055 TGCGTGAAGGCACAATTTTACT 59.379 40.909 0.00 0.00 45.41 2.24
1531 1618 3.006659 TGCGTGAAGGCACAATTTTAC 57.993 42.857 0.00 0.00 45.41 2.01
1541 1628 1.094785 AACCACATATGCGTGAAGGC 58.905 50.000 1.58 0.00 39.34 4.35
1542 1629 3.848272 AAAACCACATATGCGTGAAGG 57.152 42.857 1.58 0.00 39.34 3.46
1543 1630 5.046910 AGAAAAACCACATATGCGTGAAG 57.953 39.130 1.58 0.00 39.34 3.02
1544 1631 4.083003 GGAGAAAAACCACATATGCGTGAA 60.083 41.667 1.58 0.00 39.34 3.18
1545 1632 3.438781 GGAGAAAAACCACATATGCGTGA 59.561 43.478 1.58 0.00 39.34 4.35
1546 1633 3.727673 CGGAGAAAAACCACATATGCGTG 60.728 47.826 1.58 0.00 36.61 5.34
1547 1634 2.418628 CGGAGAAAAACCACATATGCGT 59.581 45.455 1.58 0.00 0.00 5.24
1548 1635 2.791158 GCGGAGAAAAACCACATATGCG 60.791 50.000 1.58 0.00 0.00 4.73
1549 1636 2.163412 TGCGGAGAAAAACCACATATGC 59.837 45.455 1.58 0.00 0.00 3.14
1550 1637 4.353737 CATGCGGAGAAAAACCACATATG 58.646 43.478 0.00 0.00 30.41 1.78
1551 1638 3.381272 CCATGCGGAGAAAAACCACATAT 59.619 43.478 0.00 0.00 30.41 1.78
1552 1639 2.752354 CCATGCGGAGAAAAACCACATA 59.248 45.455 0.00 0.00 30.41 2.29
1553 1640 1.545582 CCATGCGGAGAAAAACCACAT 59.454 47.619 0.00 0.00 31.46 3.21
1554 1641 0.958091 CCATGCGGAGAAAAACCACA 59.042 50.000 0.00 0.00 0.00 4.17
1555 1642 0.243636 CCCATGCGGAGAAAAACCAC 59.756 55.000 0.00 0.00 0.00 4.16
1556 1643 0.178975 ACCCATGCGGAGAAAAACCA 60.179 50.000 7.17 0.00 34.64 3.67
1557 1644 0.966179 AACCCATGCGGAGAAAAACC 59.034 50.000 7.17 0.00 34.64 3.27
1558 1645 2.812358 AAACCCATGCGGAGAAAAAC 57.188 45.000 7.17 0.00 34.64 2.43
1559 1646 2.036604 GGAAAACCCATGCGGAGAAAAA 59.963 45.455 7.17 0.00 34.64 1.94
1560 1647 1.616374 GGAAAACCCATGCGGAGAAAA 59.384 47.619 7.17 0.00 34.64 2.29
1561 1648 1.253100 GGAAAACCCATGCGGAGAAA 58.747 50.000 7.17 0.00 34.64 2.52
1562 1649 0.111446 TGGAAAACCCATGCGGAGAA 59.889 50.000 7.17 0.00 40.82 2.87
1563 1650 1.764422 TGGAAAACCCATGCGGAGA 59.236 52.632 7.17 0.00 40.82 3.71
1564 1651 4.413928 TGGAAAACCCATGCGGAG 57.586 55.556 7.17 0.00 40.82 4.63
1579 1666 0.837272 AGAATGGGACCCATACGTGG 59.163 55.000 26.78 0.00 44.40 4.94
1580 1667 2.288666 CAAGAATGGGACCCATACGTG 58.711 52.381 26.78 18.79 44.40 4.49
1581 1668 1.913419 ACAAGAATGGGACCCATACGT 59.087 47.619 26.78 16.99 44.40 3.57
1582 1669 2.710096 ACAAGAATGGGACCCATACG 57.290 50.000 26.78 16.37 44.40 3.06
1583 1670 4.526650 ACAAAACAAGAATGGGACCCATAC 59.473 41.667 26.78 5.60 44.40 2.39
1584 1671 4.526262 CACAAAACAAGAATGGGACCCATA 59.474 41.667 26.78 0.00 44.40 2.74
1586 1673 2.697751 CACAAAACAAGAATGGGACCCA 59.302 45.455 17.73 17.73 38.19 4.51
1587 1674 2.698274 ACACAAAACAAGAATGGGACCC 59.302 45.455 2.45 2.45 0.00 4.46
1588 1675 3.716601 CACACAAAACAAGAATGGGACC 58.283 45.455 0.00 0.00 0.00 4.46
1589 1676 3.123050 GCACACAAAACAAGAATGGGAC 58.877 45.455 0.00 0.00 0.00 4.46
1590 1677 2.102252 GGCACACAAAACAAGAATGGGA 59.898 45.455 0.00 0.00 0.00 4.37
1591 1678 2.158986 TGGCACACAAAACAAGAATGGG 60.159 45.455 0.00 0.00 0.00 4.00
1592 1679 3.176552 TGGCACACAAAACAAGAATGG 57.823 42.857 0.00 0.00 0.00 3.16
1606 1693 3.348119 TGTGAGTTTAAACTGTGGCACA 58.652 40.909 25.24 25.24 39.88 4.57
1607 1694 4.095782 TCTTGTGAGTTTAAACTGTGGCAC 59.904 41.667 25.17 23.25 39.88 5.01
1608 1695 4.265893 TCTTGTGAGTTTAAACTGTGGCA 58.734 39.130 25.17 13.65 39.88 4.92
1609 1696 4.893424 TCTTGTGAGTTTAAACTGTGGC 57.107 40.909 25.17 11.22 39.88 5.01
1610 1697 7.707104 AGAATTCTTGTGAGTTTAAACTGTGG 58.293 34.615 25.17 10.40 39.88 4.17
1613 1700 9.831737 CCATAGAATTCTTGTGAGTTTAAACTG 57.168 33.333 25.17 10.56 39.88 3.16
1614 1701 9.574516 ACCATAGAATTCTTGTGAGTTTAAACT 57.425 29.630 20.67 20.67 43.16 2.66
1615 1702 9.612620 CACCATAGAATTCTTGTGAGTTTAAAC 57.387 33.333 14.36 10.47 0.00 2.01
1616 1703 9.567776 TCACCATAGAATTCTTGTGAGTTTAAA 57.432 29.630 21.61 7.09 0.00 1.52
1617 1704 9.219603 CTCACCATAGAATTCTTGTGAGTTTAA 57.780 33.333 30.67 15.06 39.00 1.52
1618 1705 8.593679 TCTCACCATAGAATTCTTGTGAGTTTA 58.406 33.333 33.48 23.80 41.45 2.01
1619 1706 7.453393 TCTCACCATAGAATTCTTGTGAGTTT 58.547 34.615 33.48 10.90 41.45 2.66
1620 1707 7.009179 TCTCACCATAGAATTCTTGTGAGTT 57.991 36.000 33.48 15.76 41.45 3.01
1621 1708 6.611613 TCTCACCATAGAATTCTTGTGAGT 57.388 37.500 33.48 21.92 41.45 3.41
1622 1709 7.912056 TTTCTCACCATAGAATTCTTGTGAG 57.088 36.000 31.82 31.82 41.72 3.51
1623 1710 7.278646 CGATTTCTCACCATAGAATTCTTGTGA 59.721 37.037 22.92 22.92 35.48 3.58
1624 1711 7.404985 CGATTTCTCACCATAGAATTCTTGTG 58.595 38.462 14.36 17.31 35.48 3.33
1625 1712 6.540189 CCGATTTCTCACCATAGAATTCTTGT 59.460 38.462 14.36 6.23 35.48 3.16
1626 1713 6.017605 CCCGATTTCTCACCATAGAATTCTTG 60.018 42.308 14.36 11.26 35.48 3.02
1627 1714 6.058183 CCCGATTTCTCACCATAGAATTCTT 58.942 40.000 14.36 0.00 35.48 2.52
1628 1715 5.131142 ACCCGATTTCTCACCATAGAATTCT 59.869 40.000 13.56 13.56 35.48 2.40
1629 1716 5.368989 ACCCGATTTCTCACCATAGAATTC 58.631 41.667 0.00 0.00 35.48 2.17
1630 1717 5.104527 TGACCCGATTTCTCACCATAGAATT 60.105 40.000 0.00 0.00 35.48 2.17
1631 1718 4.408921 TGACCCGATTTCTCACCATAGAAT 59.591 41.667 0.00 0.00 35.48 2.40
1632 1719 3.772572 TGACCCGATTTCTCACCATAGAA 59.227 43.478 0.00 0.00 33.69 2.10
1633 1720 3.371034 TGACCCGATTTCTCACCATAGA 58.629 45.455 0.00 0.00 0.00 1.98
1634 1721 3.819564 TGACCCGATTTCTCACCATAG 57.180 47.619 0.00 0.00 0.00 2.23
1635 1722 4.450976 CATTGACCCGATTTCTCACCATA 58.549 43.478 0.00 0.00 0.00 2.74
1636 1723 3.282021 CATTGACCCGATTTCTCACCAT 58.718 45.455 0.00 0.00 0.00 3.55
1637 1724 2.710377 CATTGACCCGATTTCTCACCA 58.290 47.619 0.00 0.00 0.00 4.17
1638 1725 1.401905 GCATTGACCCGATTTCTCACC 59.598 52.381 0.00 0.00 0.00 4.02
1639 1726 2.083774 TGCATTGACCCGATTTCTCAC 58.916 47.619 0.00 0.00 0.00 3.51
1640 1727 2.488204 TGCATTGACCCGATTTCTCA 57.512 45.000 0.00 0.00 0.00 3.27
1641 1728 4.023707 CCTAATGCATTGACCCGATTTCTC 60.024 45.833 22.27 0.00 0.00 2.87
1642 1729 3.885297 CCTAATGCATTGACCCGATTTCT 59.115 43.478 22.27 0.00 0.00 2.52
1643 1730 3.004734 CCCTAATGCATTGACCCGATTTC 59.995 47.826 22.27 0.00 0.00 2.17
1644 1731 2.958355 CCCTAATGCATTGACCCGATTT 59.042 45.455 22.27 0.00 0.00 2.17
1645 1732 2.586425 CCCTAATGCATTGACCCGATT 58.414 47.619 22.27 0.00 0.00 3.34
1646 1733 1.819305 GCCCTAATGCATTGACCCGAT 60.819 52.381 22.27 0.00 0.00 4.18
1647 1734 0.465460 GCCCTAATGCATTGACCCGA 60.465 55.000 22.27 0.00 0.00 5.14
1648 1735 0.751277 TGCCCTAATGCATTGACCCG 60.751 55.000 22.27 5.91 36.04 5.28
1649 1736 1.136891 GTTGCCCTAATGCATTGACCC 59.863 52.381 22.27 8.37 41.70 4.46
1650 1737 2.099756 GAGTTGCCCTAATGCATTGACC 59.900 50.000 22.27 8.02 41.70 4.02
1651 1738 2.099756 GGAGTTGCCCTAATGCATTGAC 59.900 50.000 22.27 8.75 41.70 3.18
1652 1739 2.291475 TGGAGTTGCCCTAATGCATTGA 60.291 45.455 22.27 5.42 41.70 2.57
1653 1740 2.101783 TGGAGTTGCCCTAATGCATTG 58.898 47.619 22.27 11.41 41.70 2.82
1654 1741 2.497273 GTTGGAGTTGCCCTAATGCATT 59.503 45.455 17.56 17.56 41.70 3.56
1655 1742 2.102578 GTTGGAGTTGCCCTAATGCAT 58.897 47.619 0.00 0.00 41.70 3.96
1656 1743 1.202989 TGTTGGAGTTGCCCTAATGCA 60.203 47.619 0.00 0.00 40.07 3.96
1657 1744 1.544724 TGTTGGAGTTGCCCTAATGC 58.455 50.000 0.00 0.00 34.97 3.56
1658 1745 4.096382 GTGTATGTTGGAGTTGCCCTAATG 59.904 45.833 0.00 0.00 34.97 1.90
1659 1746 4.270008 GTGTATGTTGGAGTTGCCCTAAT 58.730 43.478 0.00 0.00 34.97 1.73
1660 1747 3.560453 GGTGTATGTTGGAGTTGCCCTAA 60.560 47.826 0.00 0.00 34.97 2.69
1661 1748 2.026636 GGTGTATGTTGGAGTTGCCCTA 60.027 50.000 0.00 0.00 34.97 3.53
1662 1749 1.271926 GGTGTATGTTGGAGTTGCCCT 60.272 52.381 0.00 0.00 34.97 5.19
1663 1750 1.173913 GGTGTATGTTGGAGTTGCCC 58.826 55.000 0.00 0.00 34.97 5.36
1664 1751 0.802494 CGGTGTATGTTGGAGTTGCC 59.198 55.000 0.00 0.00 37.10 4.52
1665 1752 1.463444 GTCGGTGTATGTTGGAGTTGC 59.537 52.381 0.00 0.00 0.00 4.17
1666 1753 2.073816 GGTCGGTGTATGTTGGAGTTG 58.926 52.381 0.00 0.00 0.00 3.16
1667 1754 1.002773 GGGTCGGTGTATGTTGGAGTT 59.997 52.381 0.00 0.00 0.00 3.01
1668 1755 0.611714 GGGTCGGTGTATGTTGGAGT 59.388 55.000 0.00 0.00 0.00 3.85
1669 1756 0.611200 TGGGTCGGTGTATGTTGGAG 59.389 55.000 0.00 0.00 0.00 3.86
1670 1757 1.057471 TTGGGTCGGTGTATGTTGGA 58.943 50.000 0.00 0.00 0.00 3.53
1671 1758 1.538075 GTTTGGGTCGGTGTATGTTGG 59.462 52.381 0.00 0.00 0.00 3.77
1672 1759 1.195900 CGTTTGGGTCGGTGTATGTTG 59.804 52.381 0.00 0.00 0.00 3.33
1673 1760 1.515081 CGTTTGGGTCGGTGTATGTT 58.485 50.000 0.00 0.00 0.00 2.71
1674 1761 0.320946 CCGTTTGGGTCGGTGTATGT 60.321 55.000 0.00 0.00 42.62 2.29
1675 1762 0.037139 TCCGTTTGGGTCGGTGTATG 60.037 55.000 4.36 0.00 46.86 2.39
1676 1763 0.037046 GTCCGTTTGGGTCGGTGTAT 60.037 55.000 4.36 0.00 46.86 2.29
1677 1764 1.367102 GTCCGTTTGGGTCGGTGTA 59.633 57.895 4.36 0.00 46.86 2.90
1678 1765 2.047213 ATGTCCGTTTGGGTCGGTGT 62.047 55.000 4.36 0.00 46.86 4.16
1679 1766 1.302192 ATGTCCGTTTGGGTCGGTG 60.302 57.895 4.36 0.00 46.86 4.94
1680 1767 1.302192 CATGTCCGTTTGGGTCGGT 60.302 57.895 4.36 0.00 46.86 4.69
1682 1769 0.392461 ATCCATGTCCGTTTGGGTCG 60.392 55.000 0.00 0.00 37.00 4.79
1683 1770 1.834188 AATCCATGTCCGTTTGGGTC 58.166 50.000 0.00 0.00 37.00 4.46
1684 1771 2.298729 CAAAATCCATGTCCGTTTGGGT 59.701 45.455 0.00 0.00 37.00 4.51
1685 1772 2.298729 ACAAAATCCATGTCCGTTTGGG 59.701 45.455 11.00 0.00 34.28 4.12
1686 1773 3.658757 ACAAAATCCATGTCCGTTTGG 57.341 42.857 11.00 0.00 34.28 3.28
1687 1774 4.155449 CGTACAAAATCCATGTCCGTTTG 58.845 43.478 0.00 0.00 35.72 2.93
1688 1775 3.816523 ACGTACAAAATCCATGTCCGTTT 59.183 39.130 0.00 0.00 39.82 3.60
1689 1776 3.404899 ACGTACAAAATCCATGTCCGTT 58.595 40.909 0.00 0.00 39.82 4.44
1690 1777 3.048337 ACGTACAAAATCCATGTCCGT 57.952 42.857 0.00 0.00 38.32 4.69
1691 1778 3.682858 AGAACGTACAAAATCCATGTCCG 59.317 43.478 0.00 0.00 36.38 4.79
1692 1779 5.622770 AAGAACGTACAAAATCCATGTCC 57.377 39.130 0.00 0.00 32.27 4.02
1693 1780 6.435428 ACAAAGAACGTACAAAATCCATGTC 58.565 36.000 0.00 0.00 32.27 3.06
1694 1781 6.262273 AGACAAAGAACGTACAAAATCCATGT 59.738 34.615 0.00 0.00 34.81 3.21
1695 1782 6.668323 AGACAAAGAACGTACAAAATCCATG 58.332 36.000 0.00 0.00 0.00 3.66
1696 1783 6.877611 AGACAAAGAACGTACAAAATCCAT 57.122 33.333 0.00 0.00 0.00 3.41
1697 1784 7.972832 ATAGACAAAGAACGTACAAAATCCA 57.027 32.000 0.00 0.00 0.00 3.41
1698 1785 8.500773 TGAATAGACAAAGAACGTACAAAATCC 58.499 33.333 0.00 0.00 0.00 3.01
1699 1786 9.530129 CTGAATAGACAAAGAACGTACAAAATC 57.470 33.333 0.00 0.00 0.00 2.17
1700 1787 8.015658 GCTGAATAGACAAAGAACGTACAAAAT 58.984 33.333 0.00 0.00 0.00 1.82
1701 1788 7.011576 TGCTGAATAGACAAAGAACGTACAAAA 59.988 33.333 0.00 0.00 0.00 2.44
1702 1789 6.480651 TGCTGAATAGACAAAGAACGTACAAA 59.519 34.615 0.00 0.00 0.00 2.83
1703 1790 5.986741 TGCTGAATAGACAAAGAACGTACAA 59.013 36.000 0.00 0.00 0.00 2.41
1704 1791 5.534407 TGCTGAATAGACAAAGAACGTACA 58.466 37.500 0.00 0.00 0.00 2.90
1705 1792 5.862323 TCTGCTGAATAGACAAAGAACGTAC 59.138 40.000 0.00 0.00 0.00 3.67
1706 1793 5.862323 GTCTGCTGAATAGACAAAGAACGTA 59.138 40.000 0.00 0.00 43.12 3.57
1707 1794 4.686554 GTCTGCTGAATAGACAAAGAACGT 59.313 41.667 0.00 0.00 43.12 3.99
1708 1795 4.092091 GGTCTGCTGAATAGACAAAGAACG 59.908 45.833 7.36 0.00 44.92 3.95
1709 1796 5.241662 AGGTCTGCTGAATAGACAAAGAAC 58.758 41.667 7.36 0.00 44.92 3.01
1710 1797 5.489792 AGGTCTGCTGAATAGACAAAGAA 57.510 39.130 7.36 0.00 44.92 2.52
1711 1798 5.105310 GGTAGGTCTGCTGAATAGACAAAGA 60.105 44.000 7.36 0.00 44.92 2.52
1712 1799 5.112686 GGTAGGTCTGCTGAATAGACAAAG 58.887 45.833 7.36 0.00 44.92 2.77
1713 1800 4.530553 TGGTAGGTCTGCTGAATAGACAAA 59.469 41.667 7.36 0.00 44.92 2.83
1714 1801 4.081642 GTGGTAGGTCTGCTGAATAGACAA 60.082 45.833 7.36 0.00 44.92 3.18
1715 1802 3.447586 GTGGTAGGTCTGCTGAATAGACA 59.552 47.826 7.36 0.00 44.92 3.41
1716 1803 3.447586 TGTGGTAGGTCTGCTGAATAGAC 59.552 47.826 0.00 0.00 42.94 2.59
1717 1804 3.701542 CTGTGGTAGGTCTGCTGAATAGA 59.298 47.826 0.00 0.00 0.00 1.98
1718 1805 3.449018 ACTGTGGTAGGTCTGCTGAATAG 59.551 47.826 0.00 0.00 0.00 1.73
1719 1806 3.441101 ACTGTGGTAGGTCTGCTGAATA 58.559 45.455 0.00 0.00 0.00 1.75
1720 1807 2.260822 ACTGTGGTAGGTCTGCTGAAT 58.739 47.619 0.00 0.00 0.00 2.57
1721 1808 1.717032 ACTGTGGTAGGTCTGCTGAA 58.283 50.000 0.00 0.00 0.00 3.02
1722 1809 1.618837 GAACTGTGGTAGGTCTGCTGA 59.381 52.381 0.00 0.00 40.14 4.26
1723 1810 1.344438 TGAACTGTGGTAGGTCTGCTG 59.656 52.381 0.00 0.00 43.84 4.41
1724 1811 1.620819 CTGAACTGTGGTAGGTCTGCT 59.379 52.381 0.00 0.00 43.84 4.24
1725 1812 2.086054 CTGAACTGTGGTAGGTCTGC 57.914 55.000 0.00 0.00 43.84 4.26
1733 1820 0.250209 CTGCTCTGCTGAACTGTGGT 60.250 55.000 0.00 0.00 0.00 4.16
1738 1825 1.338579 GCCTTACTGCTCTGCTGAACT 60.339 52.381 3.58 0.00 0.00 3.01
1782 1869 2.225117 CCCATGGTCTCTCTGGGTTTTT 60.225 50.000 11.73 0.00 43.93 1.94
1783 1870 1.355720 CCCATGGTCTCTCTGGGTTTT 59.644 52.381 11.73 0.00 43.93 2.43
1790 1877 1.997874 GCCCACCCATGGTCTCTCT 60.998 63.158 11.73 0.00 45.66 3.10
1793 1880 2.044946 GTGCCCACCCATGGTCTC 60.045 66.667 11.73 0.00 45.66 3.36
1796 1883 3.506743 TGTGTGCCCACCCATGGT 61.507 61.111 11.73 0.00 45.66 3.55
1811 1898 1.738099 GACATCGCTCGGCAACTGT 60.738 57.895 0.00 0.00 0.00 3.55
1814 1901 3.554692 CCGACATCGCTCGGCAAC 61.555 66.667 0.00 0.00 46.47 4.17
1821 1908 3.402691 CTCTGTCGCCGACATCGCT 62.403 63.158 21.54 0.00 41.94 4.93
1824 1911 2.583593 GGCTCTGTCGCCGACATC 60.584 66.667 21.54 12.40 41.94 3.06
1862 1949 3.047877 CCGTCGCCCAAGTTCACC 61.048 66.667 0.00 0.00 0.00 4.02
1881 1968 3.365265 CCAGAAGGTGGCCGTTGC 61.365 66.667 0.00 0.00 40.39 4.17
1891 1978 1.902508 TCCAGTAGCAGTTCCAGAAGG 59.097 52.381 0.00 0.00 0.00 3.46
1892 1979 2.564947 AGTCCAGTAGCAGTTCCAGAAG 59.435 50.000 0.00 0.00 0.00 2.85
1916 2003 1.885887 TCCATTTTCAAAGTGCCGGAG 59.114 47.619 5.05 0.00 0.00 4.63
1918 2005 1.613437 AGTCCATTTTCAAAGTGCCGG 59.387 47.619 0.00 0.00 0.00 6.13
1919 2006 3.365969 GGTAGTCCATTTTCAAAGTGCCG 60.366 47.826 0.00 0.00 0.00 5.69
1925 2014 3.501385 CCCCAGGGTAGTCCATTTTCAAA 60.501 47.826 4.22 0.00 38.24 2.69
1943 2032 2.580322 TCTGGAATGCTTGAATACCCCA 59.420 45.455 0.00 0.00 0.00 4.96
1945 2034 4.526970 TCTTCTGGAATGCTTGAATACCC 58.473 43.478 0.00 0.00 0.00 3.69
1947 2036 7.383102 TCTTTCTTCTGGAATGCTTGAATAC 57.617 36.000 0.00 0.00 33.53 1.89
1949 2038 6.266103 TGTTCTTTCTTCTGGAATGCTTGAAT 59.734 34.615 0.00 0.00 33.53 2.57
1958 2047 4.164221 ACTGTCCTGTTCTTTCTTCTGGAA 59.836 41.667 0.00 0.00 32.64 3.53
1967 2056 4.137543 CTGCCTTTACTGTCCTGTTCTTT 58.862 43.478 0.00 0.00 0.00 2.52
1974 2063 1.059913 AGTGCTGCCTTTACTGTCCT 58.940 50.000 0.00 0.00 0.00 3.85
1978 2067 1.882912 TGTCAGTGCTGCCTTTACTG 58.117 50.000 10.59 10.59 42.34 2.74
1982 2071 2.035066 GTGATTTGTCAGTGCTGCCTTT 59.965 45.455 0.00 0.00 0.00 3.11
1987 2076 3.065786 ACAAGTGTGATTTGTCAGTGCTG 59.934 43.478 0.00 0.00 33.72 4.41
1998 2087 2.668457 GAGATTCGCGACAAGTGTGATT 59.332 45.455 9.15 0.00 0.00 2.57
2001 2090 0.363512 CGAGATTCGCGACAAGTGTG 59.636 55.000 9.15 0.00 31.14 3.82
2002 2091 2.725644 CGAGATTCGCGACAAGTGT 58.274 52.632 9.15 0.00 31.14 3.55
2033 2145 0.104487 CCATCGCTGCTGTCTGATCT 59.896 55.000 0.00 0.00 0.00 2.75
2034 2146 1.497223 GCCATCGCTGCTGTCTGATC 61.497 60.000 0.00 0.00 0.00 2.92
2046 2158 0.742281 TTCTTGAGAGCAGCCATCGC 60.742 55.000 0.00 0.00 0.00 4.58
2047 2159 1.730501 TTTCTTGAGAGCAGCCATCG 58.269 50.000 0.00 0.00 0.00 3.84
2055 2167 3.750130 TGAGTTGCAGATTTCTTGAGAGC 59.250 43.478 0.00 0.00 0.00 4.09
2056 2168 5.614231 CGTTGAGTTGCAGATTTCTTGAGAG 60.614 44.000 0.00 0.00 0.00 3.20
2057 2169 4.212004 CGTTGAGTTGCAGATTTCTTGAGA 59.788 41.667 0.00 0.00 0.00 3.27
2063 2175 2.224079 TGCTCGTTGAGTTGCAGATTTC 59.776 45.455 0.00 0.00 31.39 2.17
2082 2195 3.044059 GATTGTGTCCCAGCGCTGC 62.044 63.158 31.96 18.66 0.00 5.25
2087 2200 1.273048 TGCATTTGATTGTGTCCCAGC 59.727 47.619 0.00 0.00 0.00 4.85
2089 2202 2.036992 GGTTGCATTTGATTGTGTCCCA 59.963 45.455 0.00 0.00 0.00 4.37
2091 2204 3.383620 TGGTTGCATTTGATTGTGTCC 57.616 42.857 0.00 0.00 0.00 4.02
2093 2206 4.603989 TCATGGTTGCATTTGATTGTGT 57.396 36.364 0.00 0.00 0.00 3.72
2103 2216 2.167075 GCCTAAAGCTTCATGGTTGCAT 59.833 45.455 0.00 0.00 38.99 3.96
2106 2219 2.094545 GGTGCCTAAAGCTTCATGGTTG 60.095 50.000 0.00 0.00 44.23 3.77
2118 2231 2.738587 TTGTGGACAAGGTGCCTAAA 57.261 45.000 0.00 0.00 0.00 1.85
2138 2251 3.782889 ATTGGAATTTGTAAGCCGAGC 57.217 42.857 0.00 0.00 0.00 5.03
2139 2252 5.708948 TGAAATTGGAATTTGTAAGCCGAG 58.291 37.500 2.06 0.00 38.64 4.63
2145 2258 8.187913 TCAGACCATGAAATTGGAATTTGTAA 57.812 30.769 2.06 0.00 38.64 2.41
2163 2276 2.839486 AACTTCGCTTGATCAGACCA 57.161 45.000 0.00 0.00 0.00 4.02
2166 2279 4.257267 TCTGAAACTTCGCTTGATCAGA 57.743 40.909 0.00 0.00 40.53 3.27
2214 2327 1.748493 ACAAAAACTTTGAGGCGAGCA 59.252 42.857 6.15 0.00 0.00 4.26
2222 2335 4.143221 GCAACAGCGAAACAAAAACTTTGA 60.143 37.500 6.15 0.00 0.00 2.69
2227 2340 2.410053 TGTGCAACAGCGAAACAAAAAC 59.590 40.909 0.00 0.00 45.67 2.43
2228 2341 2.677199 TGTGCAACAGCGAAACAAAAA 58.323 38.095 0.00 0.00 45.67 1.94
2229 2342 2.354109 TGTGCAACAGCGAAACAAAA 57.646 40.000 0.00 0.00 45.67 2.44
2242 2355 1.180907 TGTTCTTGTGGCTTGTGCAA 58.819 45.000 0.00 0.00 41.91 4.08
2255 2368 6.395426 TGATCATTGCAAGAGTTTGTTCTT 57.605 33.333 4.94 0.00 37.90 2.52
2257 2370 6.211515 AGTTGATCATTGCAAGAGTTTGTTC 58.788 36.000 4.94 3.39 36.65 3.18
2258 2371 6.152932 AGTTGATCATTGCAAGAGTTTGTT 57.847 33.333 4.94 0.00 36.65 2.83
2260 2373 6.210796 TGAAGTTGATCATTGCAAGAGTTTG 58.789 36.000 4.94 0.00 37.36 2.93
2261 2374 6.263842 TCTGAAGTTGATCATTGCAAGAGTTT 59.736 34.615 4.94 0.00 0.00 2.66
2262 2375 5.766670 TCTGAAGTTGATCATTGCAAGAGTT 59.233 36.000 4.94 0.00 0.00 3.01
2263 2376 5.311265 TCTGAAGTTGATCATTGCAAGAGT 58.689 37.500 4.94 0.00 0.00 3.24
2264 2377 5.642491 TCTCTGAAGTTGATCATTGCAAGAG 59.358 40.000 4.94 14.51 0.00 2.85
2265 2378 5.554070 TCTCTGAAGTTGATCATTGCAAGA 58.446 37.500 4.94 3.10 0.00 3.02
2266 2379 5.874895 TCTCTGAAGTTGATCATTGCAAG 57.125 39.130 4.94 0.00 0.00 4.01
2267 2380 5.999600 TCTTCTCTGAAGTTGATCATTGCAA 59.000 36.000 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.