AutoCloner

Multiple sequence alignment - TraesCS3A01G253200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G253200	chr3A	100.000	2858	0	0	1	2858	474676263	474679120	0.000000e+00	5278.0
1	TraesCS3A01G253200	chr3A	99.620	526	2	0	1	526	8668633	8669158	0.000000e+00	961.0
2	TraesCS3A01G253200	chr3A	74.866	374	82	9	161	525	384197488	384197118	2.950000e-35	159.0
3	TraesCS3A01G253200	chr3A	75.852	352	57	23	1261	1604	474677436	474677767	1.370000e-33	154.0
4	TraesCS3A01G253200	chr3A	75.852	352	57	23	1174	1505	474677523	474677866	1.370000e-33	154.0
5	TraesCS3A01G253200	chr3D	96.261	1872	56	11	990	2858	355704932	355706792	0.000000e+00	3057.0
6	TraesCS3A01G253200	chr3D	92.130	432	20	3	521	938	355704502	355704933	5.270000e-167	597.0
7	TraesCS3A01G253200	chr3D	76.068	351	58	21	1174	1505	355705203	355705546	2.950000e-35	159.0
8	TraesCS3A01G253200	chr3D	75.499	351	60	21	1261	1604	355705116	355705447	6.380000e-32	148.0
9	TraesCS3A01G253200	chr3B	93.350	1188	51	23	930	2101	456673807	456674982	0.000000e+00	1731.0
10	TraesCS3A01G253200	chr3B	98.330	539	9	0	2320	2858	456675154	456675692	0.000000e+00	946.0
11	TraesCS3A01G253200	chr3B	94.737	323	15	2	598	919	456673510	456673831	4.250000e-138	501.0
12	TraesCS3A01G253200	chr3B	76.418	335	51	23	1261	1587	456674051	456674365	3.810000e-34	156.0
13	TraesCS3A01G253200	chr3B	75.783	351	59	20	1174	1505	456674138	456674481	1.370000e-33	154.0
14	TraesCS3A01G253200	chr2A	99.240	526	4	0	1	526	96143972	96143447	0.000000e+00	950.0
15	TraesCS3A01G253200	chr2A	92.181	486	38	0	2373	2858	61295311	61295796	0.000000e+00	688.0
16	TraesCS3A01G253200	chr6B	98.095	525	6	1	1	525	694414502	694413982	0.000000e+00	911.0
17	TraesCS3A01G253200	chr7B	97.913	527	8	1	1	527	608191326	608191849	0.000000e+00	909.0
18	TraesCS3A01G253200	chr7D	94.886	528	27	0	1	528	119649273	119648746	0.000000e+00	826.0
19	TraesCS3A01G253200	chr2D	92.593	486	36	0	2373	2858	60765030	60765515	0.000000e+00	699.0
20	TraesCS3A01G253200	chr2B	89.095	486	53	0	2373	2858	95218971	95219456	3.150000e-169	604.0
21	TraesCS3A01G253200	chr1A	90.426	282	27	0	1	282	346751171	346750890	3.480000e-99	372.0
22	TraesCS3A01G253200	chr1A	88.755	249	28	0	276	524	346697127	346696879	3.580000e-79	305.0
23	TraesCS3A01G253200	chr1A	83.495	103	15	2	1516	1617	544177248	544177349	8.430000e-16	95.3
24	TraesCS3A01G253200	chr1B	84.314	102	16	0	1516	1617	614183912	614184013	1.810000e-17	100.0
25	TraesCS3A01G253200	chr1D	83.495	103	15	2	1516	1617	448283756	448283857	8.430000e-16	95.3
26	TraesCS3A01G253200	chr1D	87.143	70	8	1	1554	1623	332703343	332703275	8.490000e-11	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G253200	chr3A	474676263	474679120	2857	False	1862.00	5278	83.901333	1	2858	3	chr3A.!!$F2	2857
1	TraesCS3A01G253200	chr3A	8668633	8669158	525	False	961.00	961	99.620000	1	526	1	chr3A.!!$F1	525
2	TraesCS3A01G253200	chr3D	355704502	355706792	2290	False	990.25	3057	84.989500	521	2858	4	chr3D.!!$F1	2337
3	TraesCS3A01G253200	chr3B	456673510	456675692	2182	False	697.60	1731	87.723600	598	2858	5	chr3B.!!$F1	2260
4	TraesCS3A01G253200	chr2A	96143447	96143972	525	True	950.00	950	99.240000	1	526	1	chr2A.!!$R1	525
5	TraesCS3A01G253200	chr6B	694413982	694414502	520	True	911.00	911	98.095000	1	525	1	chr6B.!!$R1	524
6	TraesCS3A01G253200	chr7B	608191326	608191849	523	False	909.00	909	97.913000	1	527	1	chr7B.!!$F1	526
7	TraesCS3A01G253200	chr7D	119648746	119649273	527	True	826.00	826	94.886000	1	528	1	chr7D.!!$R1	527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
569	574	0.375803	GCCGCGTAAAAATGACCGAT	59.624	50.0	4.92	0.0	0.0	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2004	2034	0.04394	AGGGAGGAGTCAGGAATGCT	59.956	55.0	0.0	0.0	0.0	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
383	388	1.616374	TCACATGTCAAGCGTGGACTA	59.384	47.619	0.00	0.00	38.39	2.59
547	552	0.810648	GGCTTGATGTGGCGAATTCA	59.189	50.000	6.22	0.00	0.00	2.57
561	566	2.663334	CGAATTCACAGCCGCGTAAAAA	60.663	45.455	4.92	0.00	0.00	1.94
563	568	2.323939	TTCACAGCCGCGTAAAAATG	57.676	45.000	4.92	0.00	0.00	2.32
565	570	1.195900	TCACAGCCGCGTAAAAATGAC	59.804	47.619	4.92	0.00	0.00	3.06
569	574	0.375803	GCCGCGTAAAAATGACCGAT	59.624	50.000	4.92	0.00	0.00	4.18
640	659	1.988015	CCCATAACCCACCGTGTCT	59.012	57.895	0.00	0.00	0.00	3.41
654	673	1.149148	GTGTCTTCCTTCCTTCGTGC	58.851	55.000	0.00	0.00	0.00	5.34
691	711	0.674581	TCCCGCTGCATCAGTTTGAG	60.675	55.000	0.00	0.00	33.43	3.02
841	861	2.202851	AGCCGATCAAGCTGCTCG	60.203	61.111	1.00	1.88	39.69	5.03
919	939	2.981859	TTTCGAGCCCTATCCAGTTC	57.018	50.000	0.00	0.00	0.00	3.01
920	940	2.160721	TTCGAGCCCTATCCAGTTCT	57.839	50.000	0.00	0.00	0.00	3.01
921	941	3.308035	TTCGAGCCCTATCCAGTTCTA	57.692	47.619	0.00	0.00	0.00	2.10
922	942	3.527507	TCGAGCCCTATCCAGTTCTAT	57.472	47.619	0.00	0.00	0.00	1.98
923	943	3.845860	TCGAGCCCTATCCAGTTCTATT	58.154	45.455	0.00	0.00	0.00	1.73
924	944	4.223953	TCGAGCCCTATCCAGTTCTATTT	58.776	43.478	0.00	0.00	0.00	1.40
925	945	4.654262	TCGAGCCCTATCCAGTTCTATTTT	59.346	41.667	0.00	0.00	0.00	1.82
926	946	4.991687	CGAGCCCTATCCAGTTCTATTTTC	59.008	45.833	0.00	0.00	0.00	2.29
927	947	5.221541	CGAGCCCTATCCAGTTCTATTTTCT	60.222	44.000	0.00	0.00	0.00	2.52
928	948	6.015350	CGAGCCCTATCCAGTTCTATTTTCTA	60.015	42.308	0.00	0.00	0.00	2.10
929	949	7.310113	CGAGCCCTATCCAGTTCTATTTTCTAT	60.310	40.741	0.00	0.00	0.00	1.98
930	950	8.974292	AGCCCTATCCAGTTCTATTTTCTATA	57.026	34.615	0.00	0.00	0.00	1.31
931	951	8.817876	AGCCCTATCCAGTTCTATTTTCTATAC	58.182	37.037	0.00	0.00	0.00	1.47
932	952	8.594550	GCCCTATCCAGTTCTATTTTCTATACA	58.405	37.037	0.00	0.00	0.00	2.29
933	953	9.930693	CCCTATCCAGTTCTATTTTCTATACAC	57.069	37.037	0.00	0.00	0.00	2.90
939	959	9.239002	CCAGTTCTATTTTCTATACACTTCTCG	57.761	37.037	0.00	0.00	0.00	4.04
942	962	8.960075	GTTCTATTTTCTATACACTTCTCGAGC	58.040	37.037	7.81	0.00	0.00	5.03
943	963	7.649973	TCTATTTTCTATACACTTCTCGAGCC	58.350	38.462	7.81	0.00	0.00	4.70
944	964	4.650754	TTTCTATACACTTCTCGAGCCC	57.349	45.455	7.81	0.00	0.00	5.19
945	965	2.584236	TCTATACACTTCTCGAGCCCC	58.416	52.381	7.81	0.00	0.00	5.80
946	966	2.092049	TCTATACACTTCTCGAGCCCCA	60.092	50.000	7.81	0.00	0.00	4.96
947	967	1.794714	ATACACTTCTCGAGCCCCAT	58.205	50.000	7.81	0.00	0.00	4.00
948	968	1.112113	TACACTTCTCGAGCCCCATC	58.888	55.000	7.81	0.00	0.00	3.51
949	969	1.144936	CACTTCTCGAGCCCCATCC	59.855	63.158	7.81	0.00	0.00	3.51
950	970	1.306141	ACTTCTCGAGCCCCATCCA	60.306	57.895	7.81	0.00	0.00	3.41
951	971	1.333636	ACTTCTCGAGCCCCATCCAG	61.334	60.000	7.81	0.00	0.00	3.86
952	972	1.306141	TTCTCGAGCCCCATCCAGT	60.306	57.895	7.81	0.00	0.00	4.00
976	996	3.754530	TTCGTGCCGCTCGATCCA	61.755	61.111	17.39	1.26	37.18	3.41
1359	1379	1.001641	CCACCAAGGAGAAGGGCTG	60.002	63.158	0.00	0.00	41.22	4.85
1375	1395	2.032528	TGCGAGGCCAAGGACAAG	59.967	61.111	5.01	0.00	0.00	3.16
1512	1532	1.101635	CAGACCGGGAGCTACATCGA	61.102	60.000	6.32	0.00	0.00	3.59
1634	1654	6.567701	CGTGCAGGTACATTGTTACATTCTTT	60.568	38.462	0.00	0.00	0.00	2.52
1635	1655	7.145323	GTGCAGGTACATTGTTACATTCTTTT	58.855	34.615	0.00	0.00	0.00	2.27
1636	1656	7.326063	GTGCAGGTACATTGTTACATTCTTTTC	59.674	37.037	0.00	0.00	0.00	2.29
1637	1657	7.230510	TGCAGGTACATTGTTACATTCTTTTCT	59.769	33.333	0.00	0.00	0.00	2.52
1638	1658	8.082242	GCAGGTACATTGTTACATTCTTTTCTT	58.918	33.333	0.00	0.00	0.00	2.52
1639	1659	9.612620	CAGGTACATTGTTACATTCTTTTCTTC	57.387	33.333	0.00	0.00	0.00	2.87
1640	1660	9.574516	AGGTACATTGTTACATTCTTTTCTTCT	57.425	29.630	0.00	0.00	0.00	2.85
1645	1665	9.846248	CATTGTTACATTCTTTTCTTCTTAGGG	57.154	33.333	0.00	0.00	0.00	3.53
1646	1666	7.996098	TGTTACATTCTTTTCTTCTTAGGGG	57.004	36.000	0.00	0.00	0.00	4.79
1649	1669	9.074576	GTTACATTCTTTTCTTCTTAGGGGAAA	57.925	33.333	0.00	0.00	0.00	3.13
1650	1670	7.767250	ACATTCTTTTCTTCTTAGGGGAAAG	57.233	36.000	0.00	0.00	31.88	2.62
1653	1673	8.681806	CATTCTTTTCTTCTTAGGGGAAAGATC	58.318	37.037	9.16	0.00	35.48	2.75
1656	1676	7.459444	TCTTTTCTTCTTAGGGGAAAGATCTCT	59.541	37.037	0.00	0.00	35.48	3.10
1657	1677	7.575499	TTTCTTCTTAGGGGAAAGATCTCTT	57.425	36.000	0.00	0.00	35.48	2.85
1658	1678	6.552445	TCTTCTTAGGGGAAAGATCTCTTG	57.448	41.667	0.00	0.00	35.48	3.02
1659	1679	6.026186	TCTTCTTAGGGGAAAGATCTCTTGT	58.974	40.000	0.00	0.00	35.48	3.16
1660	1680	5.941555	TCTTAGGGGAAAGATCTCTTGTC	57.058	43.478	0.00	0.00	36.12	3.18
1661	1681	5.342017	TCTTAGGGGAAAGATCTCTTGTCA	58.658	41.667	0.00	0.00	36.12	3.58
1662	1682	3.990959	AGGGGAAAGATCTCTTGTCAC	57.009	47.619	0.00	0.00	36.12	3.67
1663	1683	3.251484	AGGGGAAAGATCTCTTGTCACA	58.749	45.455	0.00	0.00	36.12	3.58
1664	1684	3.848975	AGGGGAAAGATCTCTTGTCACAT	59.151	43.478	0.00	0.00	36.12	3.21
1672	1692	4.936411	AGATCTCTTGTCACATTCTTGCAG	59.064	41.667	0.00	0.00	0.00	4.41
1691	1711	3.061429	GCAGCAGACGTTCTAAAGATGAC	59.939	47.826	0.00	0.00	0.00	3.06
1860	1882	2.029290	CGGGACCAGGGATTACTAATCG	60.029	54.545	0.00	0.00	38.82	3.34
1861	1883	2.970640	GGGACCAGGGATTACTAATCGT	59.029	50.000	0.00	0.00	38.82	3.73
2004	2034	4.016444	GACCTAGACAAATGCCCAATGAA	58.984	43.478	0.00	0.00	0.00	2.57
2050	2082	3.119316	TGCTTGTTTCCGTGTTCACAATT	60.119	39.130	3.87	0.00	0.00	2.32
2079	2117	5.669164	AGTTGGAATCCTAGTGTCTCTTC	57.331	43.478	0.00	0.00	0.00	2.87
2089	2127	7.209340	TCCTAGTGTCTCTTCTGTAATCCTA	57.791	40.000	0.00	0.00	0.00	2.94
2138	2176	4.381185	CCATTTGTCATCCTGGTGAACATG	60.381	45.833	0.00	0.00	0.00	3.21
2332	2385	2.135664	ACGAATACGGATACTGCAGC	57.864	50.000	15.27	0.00	44.46	5.25
2540	2593	4.147322	GCCATGAACACGGCGTCG	62.147	66.667	10.85	8.42	38.82	5.12
2645	2698	2.027625	GTTGGTCGCCGAGGTGAAG	61.028	63.158	6.99	0.00	36.33	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
383	388	4.035208	GCTAGTTTATGTGCCGCTACATTT	59.965	41.667	11.88	0.00	41.31	2.32
532	537	0.804364	GCTGTGAATTCGCCACATCA	59.196	50.000	16.14	0.00	42.79	3.07
547	552	0.519961	GGTCATTTTTACGCGGCTGT	59.480	50.000	12.47	0.32	0.00	4.40
561	566	0.469917	GTGGTGATGGGATCGGTCAT	59.530	55.000	0.00	0.00	0.00	3.06
563	568	1.146263	GGTGGTGATGGGATCGGTC	59.854	63.158	0.00	0.00	0.00	4.79
565	570	0.183492	AATGGTGGTGATGGGATCGG	59.817	55.000	0.00	0.00	0.00	4.18
569	574	1.991813	TCTTGAATGGTGGTGATGGGA	59.008	47.619	0.00	0.00	0.00	4.37
602	621	3.886044	TCGTGCATCGAAGTGAGTT	57.114	47.368	8.59	0.00	45.98	3.01
640	659	1.871039	CGAAAAGCACGAAGGAAGGAA	59.129	47.619	0.00	0.00	0.00	3.36
654	673	3.914364	CGGGAGAAAAGAATTGCGAAAAG	59.086	43.478	0.00	0.00	0.00	2.27
691	711	3.372730	TGTCCGCATTTGCCTGGC	61.373	61.111	12.87	12.87	37.91	4.85
788	808	1.630126	TTGAGCTGGGAGAGATGCCC	61.630	60.000	0.00	0.00	46.22	5.36
841	861	1.337703	TGGATGCTTTGCTGTTGTGAC	59.662	47.619	0.00	0.00	0.00	3.67
919	939	6.864165	GGGCTCGAGAAGTGTATAGAAAATAG	59.136	42.308	18.75	0.00	0.00	1.73
920	940	6.239232	GGGGCTCGAGAAGTGTATAGAAAATA	60.239	42.308	18.75	0.00	0.00	1.40
921	941	5.453480	GGGGCTCGAGAAGTGTATAGAAAAT	60.453	44.000	18.75	0.00	0.00	1.82
922	942	4.142004	GGGGCTCGAGAAGTGTATAGAAAA	60.142	45.833	18.75	0.00	0.00	2.29
923	943	3.383825	GGGGCTCGAGAAGTGTATAGAAA	59.616	47.826	18.75	0.00	0.00	2.52
924	944	2.957006	GGGGCTCGAGAAGTGTATAGAA	59.043	50.000	18.75	0.00	0.00	2.10
925	945	2.092049	TGGGGCTCGAGAAGTGTATAGA	60.092	50.000	18.75	0.00	0.00	1.98
926	946	2.307768	TGGGGCTCGAGAAGTGTATAG	58.692	52.381	18.75	0.00	0.00	1.31
927	947	2.447408	TGGGGCTCGAGAAGTGTATA	57.553	50.000	18.75	0.00	0.00	1.47
928	948	1.689273	GATGGGGCTCGAGAAGTGTAT	59.311	52.381	18.75	1.75	0.00	2.29
929	949	1.112113	GATGGGGCTCGAGAAGTGTA	58.888	55.000	18.75	0.00	0.00	2.90
930	950	1.617947	GGATGGGGCTCGAGAAGTGT	61.618	60.000	18.75	0.00	0.00	3.55
931	951	1.144936	GGATGGGGCTCGAGAAGTG	59.855	63.158	18.75	0.00	0.00	3.16
932	952	1.306141	TGGATGGGGCTCGAGAAGT	60.306	57.895	18.75	0.00	0.00	3.01
933	953	1.333636	ACTGGATGGGGCTCGAGAAG	61.334	60.000	18.75	2.30	0.00	2.85
934	954	0.909610	AACTGGATGGGGCTCGAGAA	60.910	55.000	18.75	0.00	0.00	2.87
935	955	0.909610	AAACTGGATGGGGCTCGAGA	60.910	55.000	18.75	0.00	0.00	4.04
936	956	0.035056	AAAACTGGATGGGGCTCGAG	60.035	55.000	8.45	8.45	0.00	4.04
937	957	0.322456	CAAAACTGGATGGGGCTCGA	60.322	55.000	0.00	0.00	0.00	4.04
938	958	1.937546	GCAAAACTGGATGGGGCTCG	61.938	60.000	0.00	0.00	0.00	5.03
939	959	1.893062	GCAAAACTGGATGGGGCTC	59.107	57.895	0.00	0.00	0.00	4.70
940	960	1.978617	CGCAAAACTGGATGGGGCT	60.979	57.895	0.00	0.00	0.00	5.19
941	961	1.815817	AACGCAAAACTGGATGGGGC	61.816	55.000	0.00	0.00	34.14	5.80
942	962	0.243636	GAACGCAAAACTGGATGGGG	59.756	55.000	0.00	0.00	34.14	4.96
943	963	0.109781	CGAACGCAAAACTGGATGGG	60.110	55.000	0.00	0.00	35.78	4.00
944	964	0.591170	ACGAACGCAAAACTGGATGG	59.409	50.000	0.00	0.00	0.00	3.51
945	965	1.673760	CACGAACGCAAAACTGGATG	58.326	50.000	0.00	0.00	0.00	3.51
946	966	0.040425	GCACGAACGCAAAACTGGAT	60.040	50.000	0.00	0.00	0.00	3.41
947	967	1.353804	GCACGAACGCAAAACTGGA	59.646	52.632	0.00	0.00	0.00	3.86
948	968	1.657181	GGCACGAACGCAAAACTGG	60.657	57.895	0.00	0.00	0.00	4.00
949	969	3.902234	GGCACGAACGCAAAACTG	58.098	55.556	0.00	0.00	0.00	3.16
976	996	3.451178	TCTTCGCAAGCTAAGGTAGGATT	59.549	43.478	6.50	0.00	37.18	3.01
1108	1128	3.275143	CACCAAAACCACAGTGTGAGTA	58.725	45.455	24.99	0.00	35.23	2.59
1359	1379	2.747855	CCTTGTCCTTGGCCTCGC	60.748	66.667	3.32	0.00	0.00	5.03
1634	1654	6.502158	ACAAGAGATCTTTCCCCTAAGAAGAA	59.498	38.462	0.00	0.00	37.66	2.52
1635	1655	6.026186	ACAAGAGATCTTTCCCCTAAGAAGA	58.974	40.000	0.00	0.00	37.66	2.87
1636	1656	6.070538	TGACAAGAGATCTTTCCCCTAAGAAG	60.071	42.308	0.00	0.00	37.66	2.85
1637	1657	5.785423	TGACAAGAGATCTTTCCCCTAAGAA	59.215	40.000	0.00	0.00	37.66	2.52
1638	1658	5.187967	GTGACAAGAGATCTTTCCCCTAAGA	59.812	44.000	0.00	0.00	38.43	2.10
1639	1659	5.046304	TGTGACAAGAGATCTTTCCCCTAAG	60.046	44.000	0.00	0.00	33.11	2.18
1640	1660	4.844085	TGTGACAAGAGATCTTTCCCCTAA	59.156	41.667	0.00	0.00	33.11	2.69
1641	1661	4.425772	TGTGACAAGAGATCTTTCCCCTA	58.574	43.478	0.00	0.00	33.11	3.53
1642	1662	3.251484	TGTGACAAGAGATCTTTCCCCT	58.749	45.455	0.00	0.00	33.11	4.79
1643	1663	3.703001	TGTGACAAGAGATCTTTCCCC	57.297	47.619	0.00	0.00	33.11	4.81
1644	1664	5.495640	AGAATGTGACAAGAGATCTTTCCC	58.504	41.667	0.00	0.00	33.11	3.97
1645	1665	6.622462	GCAAGAATGTGACAAGAGATCTTTCC	60.622	42.308	0.00	0.00	33.11	3.13
1646	1666	6.072838	TGCAAGAATGTGACAAGAGATCTTTC	60.073	38.462	0.00	0.00	33.11	2.62
1649	1669	4.903054	TGCAAGAATGTGACAAGAGATCT	58.097	39.130	0.00	0.00	0.00	2.75
1650	1670	4.437121	GCTGCAAGAATGTGACAAGAGATC	60.437	45.833	0.00	0.00	34.07	2.75
1653	1673	2.551032	TGCTGCAAGAATGTGACAAGAG	59.449	45.455	0.00	0.00	34.07	2.85
1656	1676	2.291465	GTCTGCTGCAAGAATGTGACAA	59.709	45.455	3.02	0.00	34.07	3.18
1657	1677	1.875514	GTCTGCTGCAAGAATGTGACA	59.124	47.619	3.02	0.00	34.07	3.58
1658	1678	1.136141	CGTCTGCTGCAAGAATGTGAC	60.136	52.381	3.02	4.87	34.07	3.67
1659	1679	1.150827	CGTCTGCTGCAAGAATGTGA	58.849	50.000	3.02	0.00	34.07	3.58
1660	1680	0.870393	ACGTCTGCTGCAAGAATGTG	59.130	50.000	3.02	0.00	34.07	3.21
1661	1681	1.532868	GAACGTCTGCTGCAAGAATGT	59.467	47.619	3.02	1.18	34.07	2.71
1662	1682	1.802960	AGAACGTCTGCTGCAAGAATG	59.197	47.619	3.02	0.53	34.07	2.67
1663	1683	2.175878	AGAACGTCTGCTGCAAGAAT	57.824	45.000	3.02	0.00	34.07	2.40
1664	1684	2.812358	TAGAACGTCTGCTGCAAGAA	57.188	45.000	3.02	0.00	34.07	2.52
1672	1692	2.930682	GGGTCATCTTTAGAACGTCTGC	59.069	50.000	0.00	0.00	0.00	4.26
1691	1711	1.738700	GCACACAAAAACCACACAGGG	60.739	52.381	0.00	0.00	43.89	4.45
2004	2034	0.043940	AGGGAGGAGTCAGGAATGCT	59.956	55.000	0.00	0.00	0.00	3.79
2009	2039	0.719015	ATGGAAGGGAGGAGTCAGGA	59.281	55.000	0.00	0.00	0.00	3.86
2050	2082	9.886132	GAGACACTAGGATTCCAACTTTATTAA	57.114	33.333	5.29	0.00	0.00	1.40
2109	2147	1.203052	CAGGATGACAAATGGGTGCAC	59.797	52.381	8.80	8.80	39.69	4.57
2122	2160	1.984424	TGACCATGTTCACCAGGATGA	59.016	47.619	0.00	0.00	39.69	2.92
2138	2176	1.271379	TGTGTCTCCGTGTACATGACC	59.729	52.381	16.87	8.84	0.00	4.02
2540	2593	4.025401	CTCAACGTTGGCACCGGC	62.025	66.667	27.02	0.00	40.13	6.13

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.