Multiple sequence alignment - TraesCS3A01G251600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G251600 chr3A 100.000 6323 0 0 1 6323 471363996 471357674 0.000000e+00 11677.0
1 TraesCS3A01G251600 chr3B 92.003 5402 267 66 497 5800 451846410 451841076 0.000000e+00 7430.0
2 TraesCS3A01G251600 chr3B 86.376 367 30 9 1 363 451846788 451846438 3.580000e-102 383.0
3 TraesCS3A01G251600 chr3B 93.289 149 8 1 5928 6076 451840625 451840479 1.070000e-52 219.0
4 TraesCS3A01G251600 chr3B 94.382 89 5 0 6235 6323 451839897 451839809 3.070000e-28 137.0
5 TraesCS3A01G251600 chr3B 100.000 47 0 0 5849 5895 451840674 451840628 3.140000e-13 87.9
6 TraesCS3A01G251600 chr3D 91.022 4667 234 75 1 4574 352792575 352788001 0.000000e+00 6126.0
7 TraesCS3A01G251600 chr3D 91.246 1428 65 23 4694 6115 352787970 352786597 0.000000e+00 1890.0
8 TraesCS3A01G251600 chr3D 94.444 108 6 0 6216 6323 352786555 352786448 3.920000e-37 167.0
9 TraesCS3A01G251600 chr4B 89.478 1131 93 12 3071 4180 534069399 534070524 0.000000e+00 1406.0
10 TraesCS3A01G251600 chr4B 91.228 171 15 0 3181 3351 190887685 190887515 3.810000e-57 233.0
11 TraesCS3A01G251600 chr5B 90.271 627 46 6 3563 4180 195147441 195146821 0.000000e+00 806.0
12 TraesCS3A01G251600 chr7B 83.835 266 34 4 1676 1939 595840373 595840115 1.760000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G251600 chr3A 471357674 471363996 6322 True 11677.000000 11677 100.000000 1 6323 1 chr3A.!!$R1 6322
1 TraesCS3A01G251600 chr3B 451839809 451846788 6979 True 1651.380000 7430 93.210000 1 6323 5 chr3B.!!$R1 6322
2 TraesCS3A01G251600 chr3D 352786448 352792575 6127 True 2727.666667 6126 92.237333 1 6323 3 chr3D.!!$R1 6322
3 TraesCS3A01G251600 chr4B 534069399 534070524 1125 False 1406.000000 1406 89.478000 3071 4180 1 chr4B.!!$F1 1109
4 TraesCS3A01G251600 chr5B 195146821 195147441 620 True 806.000000 806 90.271000 3563 4180 1 chr5B.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 833 0.107165 CCCAAACCCTAGGTAGCAGC 60.107 60.0 8.29 0.00 33.12 5.25 F
1426 1466 0.035630 ATGCCGCTCTTCTCAAAGCT 60.036 50.0 0.00 0.00 36.35 3.74 F
2231 2291 0.035056 CCATCCCTTCTTGTCGCCTT 60.035 55.0 0.00 0.00 0.00 4.35 F
2233 2293 0.108138 ATCCCTTCTTGTCGCCTTCG 60.108 55.0 0.00 0.00 0.00 3.79 F
3915 4013 0.320073 TGTTGCGGTAAGTCCTTCCG 60.320 55.0 11.23 11.23 45.94 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 2272 0.035056 AAGGCGACAAGAAGGGATGG 60.035 55.000 0.00 0.00 0.00 3.51 R
3113 3198 0.947244 CAGGGCAAGGATTATGACGC 59.053 55.000 0.00 0.00 0.00 5.19 R
3915 4013 1.092921 TTGGTTGGTGAGTGCACGAC 61.093 55.000 12.01 12.16 46.09 4.34 R
4084 4198 3.259064 TGCCTGAAACAGTAATACTCGC 58.741 45.455 0.00 0.00 0.00 5.03 R
5511 5644 0.037975 CAATGGCAACTGGACAAGGC 60.038 55.000 0.00 0.00 38.69 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.126524 GCATAACCGTGGAGCCTC 57.873 61.111 0.00 0.00 0.00 4.70
18 19 1.883084 GCATAACCGTGGAGCCTCG 60.883 63.158 4.13 4.13 0.00 4.63
19 20 1.883084 CATAACCGTGGAGCCTCGC 60.883 63.158 5.52 0.00 0.00 5.03
20 21 2.355986 ATAACCGTGGAGCCTCGCA 61.356 57.895 5.52 0.00 0.00 5.10
21 22 2.573609 ATAACCGTGGAGCCTCGCAC 62.574 60.000 5.52 3.95 0.00 5.34
62 69 8.873144 AGAATATTGTGCAAATTAGCCCATAAT 58.127 29.630 0.00 0.00 35.51 1.28
134 142 5.324832 ACCACCTATTCCAATCCATAAGG 57.675 43.478 0.00 0.00 0.00 2.69
166 174 3.490759 GGCGTGCCGATGTCACAG 61.491 66.667 0.00 0.00 34.27 3.66
173 181 0.872021 GCCGATGTCACAGTCGATCC 60.872 60.000 10.16 0.00 40.11 3.36
176 184 1.799181 CGATGTCACAGTCGATCCACC 60.799 57.143 4.23 0.00 40.11 4.61
203 211 6.588348 GCCTTGCGATTTTAATTAAGCATT 57.412 33.333 9.79 0.00 34.44 3.56
204 212 7.692908 GCCTTGCGATTTTAATTAAGCATTA 57.307 32.000 9.79 0.00 34.44 1.90
205 213 7.555582 GCCTTGCGATTTTAATTAAGCATTAC 58.444 34.615 9.79 1.46 34.44 1.89
206 214 7.435192 GCCTTGCGATTTTAATTAAGCATTACT 59.565 33.333 9.79 0.00 34.44 2.24
264 272 2.737932 CTTTGGACACGCTTGCTGCC 62.738 60.000 0.00 0.00 38.78 4.85
337 346 3.077359 CCCTACCAAGAGAAAGCAACTG 58.923 50.000 0.00 0.00 0.00 3.16
343 352 1.542492 AGAGAAAGCAACTGGGCATG 58.458 50.000 0.00 0.00 35.83 4.06
348 357 3.368822 GCAACTGGGCATGCTTGA 58.631 55.556 18.92 0.44 39.46 3.02
352 361 1.546923 CAACTGGGCATGCTTGATTCA 59.453 47.619 18.92 6.02 0.00 2.57
359 372 3.492137 GGGCATGCTTGATTCAATCTTCC 60.492 47.826 18.92 0.51 0.00 3.46
362 375 5.041940 GCATGCTTGATTCAATCTTCCTTC 58.958 41.667 11.37 0.00 0.00 3.46
371 384 6.486657 TGATTCAATCTTCCTTCTTTGACGTT 59.513 34.615 0.00 0.00 0.00 3.99
372 385 5.673337 TCAATCTTCCTTCTTTGACGTTG 57.327 39.130 0.00 0.00 0.00 4.10
396 409 4.974645 TTTTCTCTAGTGCTTCCTTGGA 57.025 40.909 0.00 0.00 0.00 3.53
397 410 5.505181 TTTTCTCTAGTGCTTCCTTGGAT 57.495 39.130 0.00 0.00 0.00 3.41
398 411 4.744795 TTCTCTAGTGCTTCCTTGGATC 57.255 45.455 0.00 0.00 0.00 3.36
399 412 3.034635 TCTCTAGTGCTTCCTTGGATCC 58.965 50.000 4.20 4.20 0.00 3.36
400 413 2.768527 CTCTAGTGCTTCCTTGGATCCA 59.231 50.000 11.44 11.44 0.00 3.41
401 414 3.387962 TCTAGTGCTTCCTTGGATCCAT 58.612 45.455 17.06 0.00 0.00 3.41
403 416 5.158141 TCTAGTGCTTCCTTGGATCCATAT 58.842 41.667 17.06 0.00 0.00 1.78
405 418 5.912149 AGTGCTTCCTTGGATCCATATTA 57.088 39.130 17.06 0.00 0.00 0.98
406 419 5.625150 AGTGCTTCCTTGGATCCATATTAC 58.375 41.667 17.06 8.79 0.00 1.89
407 420 5.370880 AGTGCTTCCTTGGATCCATATTACT 59.629 40.000 17.06 10.84 0.00 2.24
409 422 7.072454 AGTGCTTCCTTGGATCCATATTACTTA 59.928 37.037 17.06 0.00 0.00 2.24
410 423 7.885399 GTGCTTCCTTGGATCCATATTACTTAT 59.115 37.037 17.06 0.00 0.00 1.73
411 424 8.103305 TGCTTCCTTGGATCCATATTACTTATC 58.897 37.037 17.06 0.00 0.00 1.75
412 425 7.278868 GCTTCCTTGGATCCATATTACTTATCG 59.721 40.741 17.06 0.00 0.00 2.92
413 426 6.640518 TCCTTGGATCCATATTACTTATCGC 58.359 40.000 17.06 0.00 0.00 4.58
414 427 6.212589 TCCTTGGATCCATATTACTTATCGCA 59.787 38.462 17.06 0.00 0.00 5.10
415 428 6.536582 CCTTGGATCCATATTACTTATCGCAG 59.463 42.308 17.06 4.27 0.00 5.18
416 429 6.850752 TGGATCCATATTACTTATCGCAGA 57.149 37.500 11.44 0.00 45.75 4.26
417 430 7.423844 TGGATCCATATTACTTATCGCAGAT 57.576 36.000 11.44 0.00 45.12 2.90
418 431 7.851228 TGGATCCATATTACTTATCGCAGATT 58.149 34.615 11.44 0.00 45.12 2.40
419 432 8.321353 TGGATCCATATTACTTATCGCAGATTT 58.679 33.333 11.44 0.00 45.12 2.17
420 433 8.607459 GGATCCATATTACTTATCGCAGATTTG 58.393 37.037 6.95 0.00 45.12 2.32
421 434 9.155975 GATCCATATTACTTATCGCAGATTTGT 57.844 33.333 0.00 0.77 45.12 2.83
422 435 8.310406 TCCATATTACTTATCGCAGATTTGTG 57.690 34.615 0.00 0.00 45.12 3.33
423 436 8.147704 TCCATATTACTTATCGCAGATTTGTGA 58.852 33.333 1.53 1.53 46.94 3.58
429 442 1.358877 TCGCAGATTTGTGATGGTCG 58.641 50.000 0.00 0.00 38.84 4.79
430 443 1.078709 CGCAGATTTGTGATGGTCGT 58.921 50.000 0.00 0.00 36.95 4.34
431 444 2.094442 TCGCAGATTTGTGATGGTCGTA 60.094 45.455 0.00 0.00 38.84 3.43
432 445 2.029244 CGCAGATTTGTGATGGTCGTAC 59.971 50.000 0.00 0.00 36.95 3.67
439 452 0.737219 GTGATGGTCGTACTAGGCGT 59.263 55.000 8.45 0.00 0.00 5.68
441 454 2.355756 GTGATGGTCGTACTAGGCGTTA 59.644 50.000 8.45 0.00 0.00 3.18
460 473 4.443457 CGTTACCATCTCATCCAGTCCAAT 60.443 45.833 0.00 0.00 0.00 3.16
461 474 5.221441 CGTTACCATCTCATCCAGTCCAATA 60.221 44.000 0.00 0.00 0.00 1.90
462 475 6.591935 GTTACCATCTCATCCAGTCCAATAA 58.408 40.000 0.00 0.00 0.00 1.40
471 484 8.163408 TCTCATCCAGTCCAATAAAAAGAAGAA 58.837 33.333 0.00 0.00 0.00 2.52
472 485 8.340618 TCATCCAGTCCAATAAAAAGAAGAAG 57.659 34.615 0.00 0.00 0.00 2.85
473 486 8.163408 TCATCCAGTCCAATAAAAAGAAGAAGA 58.837 33.333 0.00 0.00 0.00 2.87
492 505 5.131809 AGAAGATAATGCTAAGCAAGAGGGT 59.868 40.000 0.00 0.00 43.62 4.34
493 506 5.379706 AGATAATGCTAAGCAAGAGGGTT 57.620 39.130 0.00 0.00 43.62 4.11
494 507 6.500589 AGATAATGCTAAGCAAGAGGGTTA 57.499 37.500 0.00 0.00 43.62 2.85
495 508 6.292150 AGATAATGCTAAGCAAGAGGGTTAC 58.708 40.000 0.00 0.00 43.62 2.50
496 509 2.380084 TGCTAAGCAAGAGGGTTACG 57.620 50.000 0.00 0.00 38.39 3.18
497 510 1.066430 TGCTAAGCAAGAGGGTTACGG 60.066 52.381 0.00 0.00 38.39 4.02
498 511 1.742750 GCTAAGCAAGAGGGTTACGGG 60.743 57.143 0.00 0.00 38.39 5.28
499 512 0.251073 TAAGCAAGAGGGTTACGGGC 59.749 55.000 0.00 0.00 38.39 6.13
542 559 3.893326 ACCCCAAGCAATATTCAAAGC 57.107 42.857 0.00 0.00 0.00 3.51
547 564 4.141892 CCCAAGCAATATTCAAAGCATCCA 60.142 41.667 0.00 0.00 0.00 3.41
594 620 2.491693 CGAGGGCTAAAATGCAAAAGGA 59.508 45.455 0.00 0.00 34.04 3.36
595 621 3.056891 CGAGGGCTAAAATGCAAAAGGAA 60.057 43.478 0.00 0.00 34.04 3.36
596 622 4.560513 CGAGGGCTAAAATGCAAAAGGAAA 60.561 41.667 0.00 0.00 34.04 3.13
597 623 4.898320 AGGGCTAAAATGCAAAAGGAAAG 58.102 39.130 0.00 0.00 34.04 2.62
598 624 4.592778 AGGGCTAAAATGCAAAAGGAAAGA 59.407 37.500 0.00 0.00 34.04 2.52
599 625 5.071653 AGGGCTAAAATGCAAAAGGAAAGAA 59.928 36.000 0.00 0.00 34.04 2.52
600 626 5.409520 GGGCTAAAATGCAAAAGGAAAGAAG 59.590 40.000 0.00 0.00 34.04 2.85
601 627 5.409520 GGCTAAAATGCAAAAGGAAAGAAGG 59.590 40.000 0.00 0.00 34.04 3.46
602 628 6.223120 GCTAAAATGCAAAAGGAAAGAAGGA 58.777 36.000 0.00 0.00 0.00 3.36
687 713 2.513026 TTTCCTCCTGCGCTCTGCTC 62.513 60.000 9.73 0.00 46.63 4.26
805 832 0.546598 CCCCAAACCCTAGGTAGCAG 59.453 60.000 8.29 0.00 33.12 4.24
806 833 0.107165 CCCAAACCCTAGGTAGCAGC 60.107 60.000 8.29 0.00 33.12 5.25
808 835 1.679032 CCAAACCCTAGGTAGCAGCAC 60.679 57.143 8.29 0.00 33.12 4.40
809 836 0.618981 AAACCCTAGGTAGCAGCACC 59.381 55.000 8.29 0.02 33.12 5.01
810 837 0.546747 AACCCTAGGTAGCAGCACCA 60.547 55.000 8.29 2.87 41.40 4.17
811 838 0.326618 ACCCTAGGTAGCAGCACCAT 60.327 55.000 8.29 4.77 41.40 3.55
812 839 0.394565 CCCTAGGTAGCAGCACCATC 59.605 60.000 8.29 0.00 41.40 3.51
813 840 1.123077 CCTAGGTAGCAGCACCATCA 58.877 55.000 14.26 1.65 41.40 3.07
814 841 1.202580 CCTAGGTAGCAGCACCATCAC 60.203 57.143 14.26 0.00 41.40 3.06
817 844 1.026718 GGTAGCAGCACCATCACCAC 61.027 60.000 8.64 0.00 38.55 4.16
820 847 2.629656 GCAGCACCATCACCACCAC 61.630 63.158 0.00 0.00 0.00 4.16
822 849 2.115052 GCACCATCACCACCACCA 59.885 61.111 0.00 0.00 0.00 4.17
856 883 4.154347 GCCTCGCAGGTCCCTGAG 62.154 72.222 17.49 13.86 46.30 3.35
857 884 4.154347 CCTCGCAGGTCCCTGAGC 62.154 72.222 17.49 1.54 46.30 4.26
946 974 3.479255 GCCTTTGTCTTTTCGGCTG 57.521 52.632 0.00 0.00 37.76 4.85
991 1019 2.900273 CGGAGCATTTCTCGGGGA 59.100 61.111 0.00 0.00 42.82 4.81
1032 1060 3.015516 TGGGAACAAGTTTCGGCTC 57.984 52.632 0.00 0.00 37.44 4.70
1130 1158 1.859302 TCGGATTCCATTTTTGGGGG 58.141 50.000 3.09 0.00 0.00 5.40
1172 1200 0.730265 TTTGACGCGCTTCTGTTTGT 59.270 45.000 15.44 0.00 0.00 2.83
1174 1202 0.730265 TGACGCGCTTCTGTTTGTTT 59.270 45.000 15.44 0.00 0.00 2.83
1175 1203 1.112459 GACGCGCTTCTGTTTGTTTG 58.888 50.000 5.73 0.00 0.00 2.93
1176 1204 0.450184 ACGCGCTTCTGTTTGTTTGT 59.550 45.000 5.73 0.00 0.00 2.83
1177 1205 1.112459 CGCGCTTCTGTTTGTTTGTC 58.888 50.000 5.56 0.00 0.00 3.18
1228 1256 1.185618 TCCAGACCAACGAGGAGGTG 61.186 60.000 5.70 0.71 41.22 4.00
1266 1294 2.510012 TCCTGCTGCTGCGATTCG 60.510 61.111 11.21 0.62 43.34 3.34
1290 1318 2.134346 GCTCGGATCTTTCTGATGCTC 58.866 52.381 0.00 0.00 40.74 4.26
1298 1326 2.690497 TCTTTCTGATGCTCCCGAGTAG 59.310 50.000 0.00 0.00 0.00 2.57
1372 1400 3.194719 GCTCATGCTTGGTGCTCC 58.805 61.111 0.00 0.00 43.37 4.70
1373 1401 1.378250 GCTCATGCTTGGTGCTCCT 60.378 57.895 6.34 0.00 43.37 3.69
1374 1402 1.654954 GCTCATGCTTGGTGCTCCTG 61.655 60.000 6.34 0.46 43.37 3.86
1375 1403 0.035725 CTCATGCTTGGTGCTCCTGA 60.036 55.000 6.34 0.14 43.37 3.86
1376 1404 0.035725 TCATGCTTGGTGCTCCTGAG 60.036 55.000 6.34 5.50 43.37 3.35
1378 1406 1.065926 CATGCTTGGTGCTCCTGAGTA 60.066 52.381 6.34 4.43 43.37 2.59
1381 1409 1.825474 GCTTGGTGCTCCTGAGTAGTA 59.175 52.381 6.34 0.00 38.95 1.82
1382 1410 2.417515 GCTTGGTGCTCCTGAGTAGTAC 60.418 54.545 6.34 0.00 38.95 2.73
1383 1411 2.901338 TGGTGCTCCTGAGTAGTACT 57.099 50.000 1.37 1.37 31.13 2.73
1384 1412 2.447443 TGGTGCTCCTGAGTAGTACTG 58.553 52.381 7.76 0.00 31.13 2.74
1406 1446 2.550606 CTCCTGTAGGATAGCTCGTGAC 59.449 54.545 0.22 0.00 44.46 3.67
1426 1466 0.035630 ATGCCGCTCTTCTCAAAGCT 60.036 50.000 0.00 0.00 36.35 3.74
1427 1467 0.250467 TGCCGCTCTTCTCAAAGCTT 60.250 50.000 0.00 0.00 36.35 3.74
1428 1468 0.167689 GCCGCTCTTCTCAAAGCTTG 59.832 55.000 0.00 0.00 36.35 4.01
1429 1469 1.800805 CCGCTCTTCTCAAAGCTTGA 58.199 50.000 0.00 0.00 36.35 3.02
1474 1529 3.007506 TCGTTGGCAGATTTAGTTCTCCA 59.992 43.478 0.00 0.00 0.00 3.86
1475 1530 3.941483 CGTTGGCAGATTTAGTTCTCCAT 59.059 43.478 0.00 0.00 0.00 3.41
1476 1531 4.201851 CGTTGGCAGATTTAGTTCTCCATG 60.202 45.833 0.00 0.00 0.00 3.66
1477 1532 3.889815 TGGCAGATTTAGTTCTCCATGG 58.110 45.455 4.97 4.97 0.00 3.66
1532 1587 1.177401 GTTCCTGGGAATTGACTGGC 58.823 55.000 5.30 0.00 36.45 4.85
1544 1599 0.531974 TGACTGGCGTGGTTGACTTC 60.532 55.000 0.00 0.00 0.00 3.01
1552 1607 1.805120 CGTGGTTGACTTCGTTGGACT 60.805 52.381 0.00 0.00 0.00 3.85
1564 1619 5.531287 ACTTCGTTGGACTTGAGCTTTTTAT 59.469 36.000 0.00 0.00 0.00 1.40
1566 1621 3.914364 CGTTGGACTTGAGCTTTTTATGC 59.086 43.478 0.00 0.00 0.00 3.14
1604 1659 2.995939 TGCAGATTGACAACTAAGCTCG 59.004 45.455 0.00 0.00 0.00 5.03
1631 1688 4.194640 GCCGAGCATTGGATGATGTATAT 58.805 43.478 0.00 0.00 45.05 0.86
1632 1689 5.104982 TGCCGAGCATTGGATGATGTATATA 60.105 40.000 0.00 0.00 45.05 0.86
1715 1772 5.066375 TGTGAAACATATTGCTGCATACTCC 59.934 40.000 1.84 0.00 45.67 3.85
1839 1896 2.927553 ATTTCGTCTTGATTGCCTGC 57.072 45.000 0.00 0.00 0.00 4.85
1995 2052 6.374333 ACATCGTGCATAATTTTGTAGGACTT 59.626 34.615 10.46 0.75 30.79 3.01
1996 2053 6.417191 TCGTGCATAATTTTGTAGGACTTC 57.583 37.500 5.54 0.00 0.00 3.01
2199 2259 4.945543 TCAGATGGTACGTACACATACACT 59.054 41.667 26.02 15.87 0.00 3.55
2212 2272 7.793888 CGTACACATACACTAATCATTTGATGC 59.206 37.037 0.00 0.00 34.49 3.91
2216 2276 7.806487 CACATACACTAATCATTTGATGCCATC 59.194 37.037 0.00 0.00 34.49 3.51
2231 2291 0.035056 CCATCCCTTCTTGTCGCCTT 60.035 55.000 0.00 0.00 0.00 4.35
2233 2293 0.108138 ATCCCTTCTTGTCGCCTTCG 60.108 55.000 0.00 0.00 0.00 3.79
2281 2341 5.874810 CAGCAAGCAATTAACTCTGTACCTA 59.125 40.000 0.00 0.00 0.00 3.08
2320 2382 1.210478 GGACCTCAGCTCCATTTGCTA 59.790 52.381 0.00 0.00 38.92 3.49
2326 2388 0.622665 AGCTCCATTTGCTAGCCACT 59.377 50.000 13.29 0.00 39.21 4.00
2328 2390 1.407989 GCTCCATTTGCTAGCCACTCT 60.408 52.381 13.29 0.00 0.00 3.24
2334 2396 0.606096 TTGCTAGCCACTCTAACGCA 59.394 50.000 13.29 0.00 29.74 5.24
2337 2418 1.471676 GCTAGCCACTCTAACGCACAT 60.472 52.381 2.29 0.00 0.00 3.21
2342 2423 2.225491 GCCACTCTAACGCACATTTTCA 59.775 45.455 0.00 0.00 0.00 2.69
2345 2426 4.024048 CCACTCTAACGCACATTTTCACTT 60.024 41.667 0.00 0.00 0.00 3.16
2406 2488 5.221880 TGATTTTGCTCCTCATTTTTGTCG 58.778 37.500 0.00 0.00 0.00 4.35
2416 2498 5.640357 TCCTCATTTTTGTCGTATGTGTACC 59.360 40.000 0.00 0.00 0.00 3.34
2419 2501 4.970472 TTTTTGTCGTATGTGTACCGTC 57.030 40.909 0.00 0.00 0.00 4.79
2465 2549 3.449528 TGAGCTGTATCTGATCTGCAC 57.550 47.619 0.00 11.87 0.00 4.57
2466 2550 3.029570 TGAGCTGTATCTGATCTGCACT 58.970 45.455 0.00 2.43 0.00 4.40
2560 2644 6.604795 CAGATAATTTTCTCATGGGTCTTGGT 59.395 38.462 0.00 0.00 0.00 3.67
2636 2720 9.109393 GATCTGCTGTATTATTTCCTTGTGTTA 57.891 33.333 0.00 0.00 0.00 2.41
2669 2753 9.174166 ACCACTTTATTCGTGCTCTTATATTTT 57.826 29.630 0.00 0.00 0.00 1.82
2750 2835 4.405680 TCAACACATCCCATACAGGTAGAG 59.594 45.833 0.00 0.00 34.66 2.43
2829 2914 5.494724 ACATCATACAGAAATGACACTGCT 58.505 37.500 0.00 0.00 38.65 4.24
2842 2927 5.576447 TGACACTGCTAGATTATGTCGAA 57.424 39.130 0.00 0.00 42.09 3.71
2931 3016 5.091261 TCTTTCTGATCTACTTTGGCTCC 57.909 43.478 0.00 0.00 0.00 4.70
2959 3044 7.993183 CCCTGTGTTCTTACTTGATGGTAATAT 59.007 37.037 0.00 0.00 32.25 1.28
3113 3198 2.756840 TCATCCTGCTGTCAGTTGAG 57.243 50.000 0.93 0.00 38.66 3.02
3114 3199 1.085091 CATCCTGCTGTCAGTTGAGC 58.915 55.000 0.93 0.00 38.66 4.26
3121 3206 2.288763 TGCTGTCAGTTGAGCGTCATAA 60.289 45.455 0.93 0.00 38.09 1.90
3151 3236 4.578105 CCCTGCATATCTTCTTTTCTGACC 59.422 45.833 0.00 0.00 0.00 4.02
3222 3310 6.962182 TGACTTGGAATCTCTTGGATATGTT 58.038 36.000 0.00 0.00 33.71 2.71
3281 3369 2.746904 TGGATTCTTATTGTGTGCCACG 59.253 45.455 0.00 0.00 37.14 4.94
3289 3377 5.808540 TCTTATTGTGTGCCACGTAAGATAC 59.191 40.000 18.24 0.00 38.26 2.24
3365 3456 1.517242 AAGCAGGAACGAAGAAGCAG 58.483 50.000 0.00 0.00 0.00 4.24
3377 3468 5.784177 ACGAAGAAGCAGAAGTATGAGAAA 58.216 37.500 0.00 0.00 0.00 2.52
3423 3514 7.490657 ACATCAATTGAGGTACTTGGTAGTA 57.509 36.000 23.29 0.00 41.55 1.82
3442 3533 9.478238 TGGTAGTAATAATGTCTGTACTGGTTA 57.522 33.333 0.00 0.00 0.00 2.85
3632 3730 6.183360 CCTCTTTATCCGTGAAGGTTTGATTC 60.183 42.308 0.00 0.00 41.99 2.52
3743 3841 4.213564 TGGAAACCTGTTGCATTTTGTT 57.786 36.364 0.00 0.00 0.00 2.83
3790 3888 1.465187 CGCTTTAAAGGTTACAGGCGC 60.465 52.381 16.78 0.00 35.34 6.53
3795 3893 1.595093 AAAGGTTACAGGCGCATGGC 61.595 55.000 27.21 15.20 42.51 4.40
3910 4008 1.012486 CCTCGTGTTGCGGTAAGTCC 61.012 60.000 0.00 0.00 41.72 3.85
3912 4010 0.390124 TCGTGTTGCGGTAAGTCCTT 59.610 50.000 0.00 0.00 41.72 3.36
3913 4011 0.788391 CGTGTTGCGGTAAGTCCTTC 59.212 55.000 0.00 0.00 36.85 3.46
3914 4012 1.154197 GTGTTGCGGTAAGTCCTTCC 58.846 55.000 0.00 0.00 0.00 3.46
3915 4013 0.320073 TGTTGCGGTAAGTCCTTCCG 60.320 55.000 11.23 11.23 45.94 4.30
3981 4081 4.024133 TCCATGTGAAATTGTGACGTCTTG 60.024 41.667 17.92 0.00 0.00 3.02
4096 4210 5.580691 TGATTGTTCCTTGCGAGTATTACTG 59.419 40.000 0.00 0.00 0.00 2.74
4123 4244 8.750515 TTCAGGCAATATTGATGAGTAATTGA 57.249 30.769 19.73 5.64 30.77 2.57
4180 4301 7.445402 GCTTCTATGGCTAATTTGAACCAGATA 59.555 37.037 0.00 0.00 35.20 1.98
4181 4302 9.512588 CTTCTATGGCTAATTTGAACCAGATAT 57.487 33.333 0.00 0.00 35.20 1.63
4226 4347 7.394016 TGAATTGTCTGACTTTCTTAGCCATA 58.606 34.615 18.24 1.56 0.00 2.74
4413 4538 1.134491 GTGTACTCTCCCCATTTCCCG 60.134 57.143 0.00 0.00 0.00 5.14
4418 4543 0.774908 TCTCCCCATTTCCCGTTGTT 59.225 50.000 0.00 0.00 0.00 2.83
4419 4544 1.173913 CTCCCCATTTCCCGTTGTTC 58.826 55.000 0.00 0.00 0.00 3.18
4420 4545 0.606944 TCCCCATTTCCCGTTGTTCG 60.607 55.000 0.00 0.00 39.52 3.95
4421 4546 0.891904 CCCCATTTCCCGTTGTTCGT 60.892 55.000 0.00 0.00 37.94 3.85
4422 4547 1.611148 CCCCATTTCCCGTTGTTCGTA 60.611 52.381 0.00 0.00 37.94 3.43
4467 4595 4.985538 TGGAAGATTAAAGCCAGACACTT 58.014 39.130 0.00 0.00 0.00 3.16
4525 4653 7.173218 TGTGCTCACTAGTCAAATTTTCTTAGG 59.827 37.037 0.00 0.00 0.00 2.69
4529 4657 8.635765 TCACTAGTCAAATTTTCTTAGGCAAT 57.364 30.769 0.00 0.00 0.00 3.56
4559 4687 7.360946 GCGTCCATGACTTGTTCTTATAAACTT 60.361 37.037 0.00 0.00 0.00 2.66
4567 4695 8.089115 ACTTGTTCTTATAAACTTGTGCTCTC 57.911 34.615 0.00 0.00 0.00 3.20
4582 4710 3.365820 GTGCTCTCATTTGCCAAAATTCG 59.634 43.478 0.00 0.00 33.59 3.34
4608 4736 4.516698 CCACATAGGTCATCATAAACTGCC 59.483 45.833 0.00 0.00 0.00 4.85
4613 4741 5.841957 AGGTCATCATAAACTGCCATTTC 57.158 39.130 0.00 0.00 0.00 2.17
4614 4742 4.646492 AGGTCATCATAAACTGCCATTTCC 59.354 41.667 0.00 0.00 0.00 3.13
4618 4746 2.760092 TCATAAACTGCCATTTCCCAGC 59.240 45.455 0.00 0.00 32.37 4.85
4623 4751 2.221906 CTGCCATTTCCCAGCTGTGC 62.222 60.000 13.81 4.14 0.00 4.57
4639 4767 1.133823 TGTGCAACCCTGATCAGTGTT 60.134 47.619 21.11 18.87 34.36 3.32
4640 4768 1.956477 GTGCAACCCTGATCAGTGTTT 59.044 47.619 19.40 7.70 26.42 2.83
4681 4809 1.473258 TCCAGCTTTGTGCAAGTGTT 58.527 45.000 0.00 0.00 45.94 3.32
4682 4810 1.134753 TCCAGCTTTGTGCAAGTGTTG 59.865 47.619 0.00 0.00 45.94 3.33
4683 4811 1.563111 CAGCTTTGTGCAAGTGTTGG 58.437 50.000 0.00 0.00 45.94 3.77
4684 4812 1.135024 CAGCTTTGTGCAAGTGTTGGT 60.135 47.619 0.00 0.00 45.94 3.67
4685 4813 1.135024 AGCTTTGTGCAAGTGTTGGTG 60.135 47.619 0.00 0.00 45.94 4.17
4686 4814 1.404047 GCTTTGTGCAAGTGTTGGTGT 60.404 47.619 0.00 0.00 42.31 4.16
4687 4815 2.930455 GCTTTGTGCAAGTGTTGGTGTT 60.930 45.455 0.00 0.00 42.31 3.32
4688 4816 3.324993 CTTTGTGCAAGTGTTGGTGTTT 58.675 40.909 0.00 0.00 0.00 2.83
4689 4817 3.393089 TTGTGCAAGTGTTGGTGTTTT 57.607 38.095 0.00 0.00 0.00 2.43
4690 4818 3.393089 TGTGCAAGTGTTGGTGTTTTT 57.607 38.095 0.00 0.00 0.00 1.94
4770 4898 4.035091 TGTGAATGTTCTGTTTTCCTCGTG 59.965 41.667 0.00 0.00 0.00 4.35
4773 4901 3.485463 TGTTCTGTTTTCCTCGTGGAT 57.515 42.857 7.11 0.00 42.81 3.41
4849 4977 8.947055 AATCTGCAATATGGAAATTAAACACC 57.053 30.769 0.00 0.00 0.00 4.16
4850 4978 7.473735 TCTGCAATATGGAAATTAAACACCA 57.526 32.000 0.00 0.00 36.83 4.17
4851 4979 7.546358 TCTGCAATATGGAAATTAAACACCAG 58.454 34.615 0.00 0.00 35.84 4.00
4852 4980 6.105333 TGCAATATGGAAATTAAACACCAGC 58.895 36.000 0.00 0.00 35.84 4.85
4855 4983 7.412891 GCAATATGGAAATTAAACACCAGCAAC 60.413 37.037 0.00 0.00 35.84 4.17
4857 4985 5.543507 TGGAAATTAAACACCAGCAACAT 57.456 34.783 0.00 0.00 0.00 2.71
4858 4986 5.923204 TGGAAATTAAACACCAGCAACATT 58.077 33.333 0.00 0.00 0.00 2.71
4859 4987 7.055667 TGGAAATTAAACACCAGCAACATTA 57.944 32.000 0.00 0.00 0.00 1.90
4860 4988 6.926272 TGGAAATTAAACACCAGCAACATTAC 59.074 34.615 0.00 0.00 0.00 1.89
4861 4989 7.151976 GGAAATTAAACACCAGCAACATTACT 58.848 34.615 0.00 0.00 0.00 2.24
4895 5028 2.739379 GCTTCTTACTCTGGCTGTTGTC 59.261 50.000 0.00 0.00 0.00 3.18
4905 5038 0.317020 GGCTGTTGTCGCTGTTGTTC 60.317 55.000 0.00 0.00 0.00 3.18
4913 5046 4.456280 TGTCGCTGTTGTTCAGATATCT 57.544 40.909 0.00 0.00 46.27 1.98
4918 5051 3.944015 GCTGTTGTTCAGATATCTGGCTT 59.056 43.478 28.30 0.00 46.27 4.35
5114 5247 2.815647 CAGCGTTCCTCTTCGGCC 60.816 66.667 0.00 0.00 0.00 6.13
5231 5364 5.163943 GCACTGAGAAAACGATTCTACTTCC 60.164 44.000 7.94 0.00 0.00 3.46
5306 5439 3.350833 AGTTTTGGATCACAGGAGATGC 58.649 45.455 0.00 0.00 36.94 3.91
5429 5562 6.815089 TCATAATTTAATGTGATTGGGGTGC 58.185 36.000 0.00 0.00 0.00 5.01
5481 5614 0.037697 TATGTGGCGCTTGTCGAGTT 60.038 50.000 7.64 0.00 41.67 3.01
5511 5644 6.780706 ATTATTTCTATTCCTTACGGTGCG 57.219 37.500 0.00 0.00 0.00 5.34
5619 5752 2.137129 TTTCGTCGGTTCATCGAACA 57.863 45.000 8.95 0.00 43.54 3.18
5620 5753 2.137129 TTCGTCGGTTCATCGAACAA 57.863 45.000 8.95 0.00 43.54 2.83
5621 5754 2.137129 TCGTCGGTTCATCGAACAAA 57.863 45.000 8.95 0.00 43.54 2.83
5622 5755 2.679450 TCGTCGGTTCATCGAACAAAT 58.321 42.857 8.95 0.00 43.54 2.32
5623 5756 3.061322 TCGTCGGTTCATCGAACAAATT 58.939 40.909 8.95 0.00 43.54 1.82
5642 5775 7.275920 ACAAATTACAAATTTGGCTGGTAACA 58.724 30.769 21.74 0.00 42.96 2.41
5672 5805 6.115446 TGACTATTAATGTGCCTTTGAGGAG 58.885 40.000 0.00 0.00 37.67 3.69
5695 5829 4.466828 CAATGTCGTGTGGCTTTTTAGAG 58.533 43.478 0.00 0.00 0.00 2.43
5704 5838 5.915196 GTGTGGCTTTTTAGAGATGTGTTTC 59.085 40.000 0.00 0.00 0.00 2.78
5709 5843 7.012515 TGGCTTTTTAGAGATGTGTTTCGTAAA 59.987 33.333 0.00 0.00 0.00 2.01
5713 5847 7.416154 TTTAGAGATGTGTTTCGTAAAGTGG 57.584 36.000 0.00 0.00 0.00 4.00
5714 5848 3.746492 AGAGATGTGTTTCGTAAAGTGGC 59.254 43.478 0.00 0.00 0.00 5.01
5717 5853 3.889196 TGTGTTTCGTAAAGTGGCATC 57.111 42.857 0.00 0.00 0.00 3.91
5758 5894 1.786579 GCATGTTTTTGCACTTCGGTC 59.213 47.619 0.00 0.00 42.31 4.79
5763 5899 3.003275 TGTTTTTGCACTTCGGTCTGATC 59.997 43.478 0.00 0.00 0.00 2.92
5793 5938 7.160726 ACCTATGTTGTTATTTGCAATTTGCT 58.839 30.769 21.19 5.00 45.31 3.91
5808 6325 7.170128 GCAATTTGCTTAGCACAAGTATGCG 62.170 44.000 6.34 0.00 44.76 4.73
5839 6356 0.413037 TGGCCTGTTTGGGATGGAAT 59.587 50.000 3.32 0.00 36.00 3.01
5840 6357 1.203288 TGGCCTGTTTGGGATGGAATT 60.203 47.619 3.32 0.00 36.00 2.17
5901 6418 5.843673 TCTTTGGAACTGTTGTATTGCAA 57.156 34.783 0.00 0.00 34.77 4.08
5905 6422 3.701542 TGGAACTGTTGTATTGCAAACCA 59.298 39.130 1.71 0.00 39.03 3.67
5907 6424 3.347958 ACTGTTGTATTGCAAACCACG 57.652 42.857 1.71 5.17 39.03 4.94
5951 6468 5.335661 GGTGATGTGTCCTAATTGACCAAAC 60.336 44.000 0.00 0.00 34.25 2.93
6083 6600 1.073025 AGGAAACGCATGCCTGACA 59.927 52.632 13.15 0.00 0.00 3.58
6138 6909 2.933287 TGGCTCCCGGACCACATT 60.933 61.111 0.73 0.00 0.00 2.71
6144 6915 2.819595 CCGGACCACATTGAGCCG 60.820 66.667 0.00 0.00 41.53 5.52
6158 6933 4.899239 GCCGATGTGGAGAGCCCG 62.899 72.222 0.00 0.00 42.00 6.13
6170 6945 4.715130 AGCCCGGACTACCAGCCA 62.715 66.667 0.73 0.00 36.22 4.75
6191 6966 2.361104 TGAGGCGGCCATGGTTTC 60.361 61.111 23.09 9.31 0.00 2.78
6193 6968 2.044946 AGGCGGCCATGGTTTCTC 60.045 61.111 23.09 0.00 0.00 2.87
6211 6986 4.100279 TCTCCCTTCTTCCTTTTTGACC 57.900 45.455 0.00 0.00 0.00 4.02
6212 6987 3.722101 TCTCCCTTCTTCCTTTTTGACCT 59.278 43.478 0.00 0.00 0.00 3.85
6213 6988 3.823304 CTCCCTTCTTCCTTTTTGACCTG 59.177 47.826 0.00 0.00 0.00 4.00
6214 6989 3.461831 TCCCTTCTTCCTTTTTGACCTGA 59.538 43.478 0.00 0.00 0.00 3.86
6229 7023 1.171308 CCTGAGGTTGAACATGCCAG 58.829 55.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.233123 TCTCCCAATAATAGTACGTGCG 57.767 45.455 0.00 0.00 0.00 5.34
18 19 8.656849 CAATATTCTCCCAATAATAGTACGTGC 58.343 37.037 0.00 0.00 0.00 5.34
19 20 9.706691 ACAATATTCTCCCAATAATAGTACGTG 57.293 33.333 0.00 0.00 0.00 4.49
20 21 9.706691 CACAATATTCTCCCAATAATAGTACGT 57.293 33.333 0.00 0.00 0.00 3.57
21 22 8.656849 GCACAATATTCTCCCAATAATAGTACG 58.343 37.037 0.00 0.00 0.00 3.67
62 69 7.360861 CCATTTTTCGCTATCTCGGCATATTTA 60.361 37.037 0.00 0.00 0.00 1.40
63 70 6.373779 CATTTTTCGCTATCTCGGCATATTT 58.626 36.000 0.00 0.00 0.00 1.40
64 71 5.106555 CCATTTTTCGCTATCTCGGCATATT 60.107 40.000 0.00 0.00 0.00 1.28
134 142 2.027625 CGCCGTTTCAGTCTGGGTC 61.028 63.158 0.00 0.00 0.00 4.46
201 209 6.708676 GCCACGCGTACTTTTTAATAGTAAT 58.291 36.000 13.44 0.00 30.42 1.89
202 210 6.093532 GCCACGCGTACTTTTTAATAGTAA 57.906 37.500 13.44 0.00 30.42 2.24
203 211 5.701029 GCCACGCGTACTTTTTAATAGTA 57.299 39.130 13.44 0.00 0.00 1.82
204 212 4.588805 GCCACGCGTACTTTTTAATAGT 57.411 40.909 13.44 0.00 0.00 2.12
226 234 6.659242 TCCAAAGATAATGTTTCTCCCAACTC 59.341 38.462 0.00 0.00 0.00 3.01
264 272 0.807667 CTACACGGCAGCAGGCTTAG 60.808 60.000 0.22 0.00 44.01 2.18
337 346 3.492137 GGAAGATTGAATCAAGCATGCCC 60.492 47.826 15.66 4.99 31.66 5.36
343 352 6.805760 GTCAAAGAAGGAAGATTGAATCAAGC 59.194 38.462 8.03 2.61 33.93 4.01
346 355 5.997746 ACGTCAAAGAAGGAAGATTGAATCA 59.002 36.000 8.03 0.00 33.93 2.57
348 357 6.263168 ACAACGTCAAAGAAGGAAGATTGAAT 59.737 34.615 0.00 0.00 33.93 2.57
352 361 6.451064 AAACAACGTCAAAGAAGGAAGATT 57.549 33.333 0.00 0.00 0.00 2.40
379 392 2.768527 TGGATCCAAGGAAGCACTAGAG 59.231 50.000 13.46 0.00 0.00 2.43
380 393 2.832838 TGGATCCAAGGAAGCACTAGA 58.167 47.619 13.46 0.00 0.00 2.43
381 394 3.853355 ATGGATCCAAGGAAGCACTAG 57.147 47.619 20.67 0.00 0.00 2.57
382 395 5.912149 AATATGGATCCAAGGAAGCACTA 57.088 39.130 20.67 3.24 0.00 2.74
384 397 5.625150 AGTAATATGGATCCAAGGAAGCAC 58.375 41.667 20.67 10.34 0.00 4.40
386 399 7.278868 CGATAAGTAATATGGATCCAAGGAAGC 59.721 40.741 20.67 7.92 0.00 3.86
387 400 7.278868 GCGATAAGTAATATGGATCCAAGGAAG 59.721 40.741 20.67 2.85 0.00 3.46
388 401 7.103641 GCGATAAGTAATATGGATCCAAGGAA 58.896 38.462 20.67 5.19 0.00 3.36
389 402 6.212589 TGCGATAAGTAATATGGATCCAAGGA 59.787 38.462 20.67 7.73 0.00 3.36
390 403 6.406370 TGCGATAAGTAATATGGATCCAAGG 58.594 40.000 20.67 0.00 0.00 3.61
391 404 7.323420 TCTGCGATAAGTAATATGGATCCAAG 58.677 38.462 20.67 6.25 0.00 3.61
393 406 6.850752 TCTGCGATAAGTAATATGGATCCA 57.149 37.500 18.88 18.88 0.00 3.41
395 408 9.155975 ACAAATCTGCGATAAGTAATATGGATC 57.844 33.333 0.00 0.00 0.00 3.36
396 409 8.939929 CACAAATCTGCGATAAGTAATATGGAT 58.060 33.333 0.00 0.00 0.00 3.41
397 410 8.147704 TCACAAATCTGCGATAAGTAATATGGA 58.852 33.333 0.00 0.00 0.00 3.41
398 411 8.310406 TCACAAATCTGCGATAAGTAATATGG 57.690 34.615 0.00 0.00 0.00 2.74
399 412 9.750882 CATCACAAATCTGCGATAAGTAATATG 57.249 33.333 0.00 0.00 0.00 1.78
400 413 8.939929 CCATCACAAATCTGCGATAAGTAATAT 58.060 33.333 0.00 0.00 0.00 1.28
401 414 7.931407 ACCATCACAAATCTGCGATAAGTAATA 59.069 33.333 0.00 0.00 0.00 0.98
403 416 6.112734 ACCATCACAAATCTGCGATAAGTAA 58.887 36.000 0.00 0.00 0.00 2.24
405 418 4.517285 ACCATCACAAATCTGCGATAAGT 58.483 39.130 0.00 0.00 0.00 2.24
406 419 4.318333 CGACCATCACAAATCTGCGATAAG 60.318 45.833 0.00 0.00 0.00 1.73
407 420 3.555547 CGACCATCACAAATCTGCGATAA 59.444 43.478 0.00 0.00 0.00 1.75
409 422 1.935873 CGACCATCACAAATCTGCGAT 59.064 47.619 0.00 0.00 0.00 4.58
410 423 1.337728 ACGACCATCACAAATCTGCGA 60.338 47.619 0.00 0.00 0.00 5.10
411 424 1.078709 ACGACCATCACAAATCTGCG 58.921 50.000 0.00 0.00 0.00 5.18
412 425 3.262420 AGTACGACCATCACAAATCTGC 58.738 45.455 0.00 0.00 0.00 4.26
413 426 5.043903 CCTAGTACGACCATCACAAATCTG 58.956 45.833 0.00 0.00 0.00 2.90
414 427 4.441634 GCCTAGTACGACCATCACAAATCT 60.442 45.833 0.00 0.00 0.00 2.40
415 428 3.802685 GCCTAGTACGACCATCACAAATC 59.197 47.826 0.00 0.00 0.00 2.17
416 429 3.737047 CGCCTAGTACGACCATCACAAAT 60.737 47.826 0.00 0.00 0.00 2.32
417 430 2.416296 CGCCTAGTACGACCATCACAAA 60.416 50.000 0.00 0.00 0.00 2.83
418 431 1.133598 CGCCTAGTACGACCATCACAA 59.866 52.381 0.00 0.00 0.00 3.33
419 432 0.736636 CGCCTAGTACGACCATCACA 59.263 55.000 0.00 0.00 0.00 3.58
420 433 0.737219 ACGCCTAGTACGACCATCAC 59.263 55.000 9.17 0.00 0.00 3.06
421 434 1.466856 AACGCCTAGTACGACCATCA 58.533 50.000 9.17 0.00 0.00 3.07
422 435 2.287248 GGTAACGCCTAGTACGACCATC 60.287 54.545 9.17 0.00 33.09 3.51
423 436 1.678101 GGTAACGCCTAGTACGACCAT 59.322 52.381 9.17 0.00 33.09 3.55
424 437 1.094785 GGTAACGCCTAGTACGACCA 58.905 55.000 9.17 0.00 33.09 4.02
425 438 1.094785 TGGTAACGCCTAGTACGACC 58.905 55.000 9.17 7.61 42.51 4.79
426 439 2.615912 AGATGGTAACGCCTAGTACGAC 59.384 50.000 9.17 0.00 42.51 4.34
427 440 2.874701 GAGATGGTAACGCCTAGTACGA 59.125 50.000 9.17 0.00 42.51 3.43
428 441 2.615447 TGAGATGGTAACGCCTAGTACG 59.385 50.000 1.20 1.20 42.51 3.67
429 442 4.321082 GGATGAGATGGTAACGCCTAGTAC 60.321 50.000 0.00 0.00 42.51 2.73
430 443 3.825014 GGATGAGATGGTAACGCCTAGTA 59.175 47.826 0.00 0.00 42.51 1.82
431 444 2.628657 GGATGAGATGGTAACGCCTAGT 59.371 50.000 0.00 0.00 42.51 2.57
432 445 2.628178 TGGATGAGATGGTAACGCCTAG 59.372 50.000 0.00 0.00 42.51 3.02
439 452 6.823286 TTATTGGACTGGATGAGATGGTAA 57.177 37.500 0.00 0.00 0.00 2.85
441 454 5.715439 TTTATTGGACTGGATGAGATGGT 57.285 39.130 0.00 0.00 0.00 3.55
461 474 9.852091 CTTGCTTAGCATTATCTTCTTCTTTTT 57.148 29.630 8.05 0.00 38.76 1.94
462 475 9.236006 TCTTGCTTAGCATTATCTTCTTCTTTT 57.764 29.630 8.05 0.00 38.76 2.27
471 484 5.379706 AACCCTCTTGCTTAGCATTATCT 57.620 39.130 8.05 0.00 38.76 1.98
472 485 5.177696 CGTAACCCTCTTGCTTAGCATTATC 59.822 44.000 8.05 0.00 38.76 1.75
473 486 5.057149 CGTAACCCTCTTGCTTAGCATTAT 58.943 41.667 8.05 0.00 38.76 1.28
483 496 0.251073 TAAGCCCGTAACCCTCTTGC 59.749 55.000 0.00 0.00 0.00 4.01
492 505 1.252904 ACTCTGCCGTAAGCCCGTAA 61.253 55.000 0.00 0.00 42.71 3.18
493 506 0.394216 TACTCTGCCGTAAGCCCGTA 60.394 55.000 0.00 0.00 42.71 4.02
494 507 1.679977 TACTCTGCCGTAAGCCCGT 60.680 57.895 0.00 0.00 42.71 5.28
495 508 1.226888 GTACTCTGCCGTAAGCCCG 60.227 63.158 0.00 0.00 42.71 6.13
496 509 0.179108 CTGTACTCTGCCGTAAGCCC 60.179 60.000 0.00 0.00 42.71 5.19
497 510 0.531200 ACTGTACTCTGCCGTAAGCC 59.469 55.000 0.00 0.00 42.71 4.35
498 511 2.223525 CCTACTGTACTCTGCCGTAAGC 60.224 54.545 0.00 0.00 44.14 3.09
499 512 2.358267 CCCTACTGTACTCTGCCGTAAG 59.642 54.545 0.00 0.00 0.00 2.34
527 544 4.467082 TGGTGGATGCTTTGAATATTGCTT 59.533 37.500 0.00 0.00 0.00 3.91
542 559 1.750399 CGCTTTCCCCTGGTGGATG 60.750 63.158 4.97 3.60 35.39 3.51
547 564 1.603739 GCTTTCGCTTTCCCCTGGT 60.604 57.895 0.00 0.00 0.00 4.00
594 620 6.351456 CCCGTATCTTCTTCTTCTCCTTCTTT 60.351 42.308 0.00 0.00 0.00 2.52
595 621 5.128008 CCCGTATCTTCTTCTTCTCCTTCTT 59.872 44.000 0.00 0.00 0.00 2.52
596 622 4.647399 CCCGTATCTTCTTCTTCTCCTTCT 59.353 45.833 0.00 0.00 0.00 2.85
597 623 4.202172 CCCCGTATCTTCTTCTTCTCCTTC 60.202 50.000 0.00 0.00 0.00 3.46
598 624 3.707102 CCCCGTATCTTCTTCTTCTCCTT 59.293 47.826 0.00 0.00 0.00 3.36
599 625 3.052793 TCCCCGTATCTTCTTCTTCTCCT 60.053 47.826 0.00 0.00 0.00 3.69
600 626 3.297736 TCCCCGTATCTTCTTCTTCTCC 58.702 50.000 0.00 0.00 0.00 3.71
601 627 5.293560 CATTCCCCGTATCTTCTTCTTCTC 58.706 45.833 0.00 0.00 0.00 2.87
602 628 4.101741 CCATTCCCCGTATCTTCTTCTTCT 59.898 45.833 0.00 0.00 0.00 2.85
664 690 0.687354 AGAGCGCAGGAGGAAAAAGA 59.313 50.000 11.47 0.00 0.00 2.52
665 691 0.801251 CAGAGCGCAGGAGGAAAAAG 59.199 55.000 11.47 0.00 0.00 2.27
679 705 0.109689 CAAGCAAAGCAGAGCAGAGC 60.110 55.000 0.00 0.00 0.00 4.09
687 713 0.672342 AGACCAAGCAAGCAAAGCAG 59.328 50.000 0.00 0.00 0.00 4.24
767 794 4.825679 GGGAGGGGAGGAGGGGTG 62.826 77.778 0.00 0.00 0.00 4.61
785 812 0.119561 TGCTACCTAGGGTTTGGGGA 59.880 55.000 14.81 0.00 37.09 4.81
805 832 2.115052 TGGTGGTGGTGATGGTGC 59.885 61.111 0.00 0.00 0.00 5.01
806 833 1.603455 GGTGGTGGTGGTGATGGTG 60.603 63.158 0.00 0.00 0.00 4.17
808 835 2.359850 CGGTGGTGGTGGTGATGG 60.360 66.667 0.00 0.00 0.00 3.51
809 836 3.055719 GCGGTGGTGGTGGTGATG 61.056 66.667 0.00 0.00 0.00 3.07
810 837 4.697756 CGCGGTGGTGGTGGTGAT 62.698 66.667 0.00 0.00 0.00 3.06
846 873 2.040278 CTGGAGGCTCAGGGACCT 59.960 66.667 17.69 0.00 39.65 3.85
924 952 3.636282 GCCGAAAAGACAAAGGCTAAA 57.364 42.857 0.00 0.00 44.06 1.85
946 974 2.047179 GGAGTTCCCACCGAGCAC 60.047 66.667 0.00 0.00 34.14 4.40
1130 1158 7.701809 AAAATCGATCGAGGACTAGAAAATC 57.298 36.000 23.84 0.00 0.00 2.17
1172 1200 0.106918 ACGCAAAGGGGACAGACAAA 60.107 50.000 0.00 0.00 0.00 2.83
1174 1202 1.227823 CACGCAAAGGGGACAGACA 60.228 57.895 0.00 0.00 0.00 3.41
1175 1203 2.617274 GCACGCAAAGGGGACAGAC 61.617 63.158 0.00 0.00 0.00 3.51
1176 1204 2.281484 GCACGCAAAGGGGACAGA 60.281 61.111 0.00 0.00 0.00 3.41
1177 1205 3.726517 CGCACGCAAAGGGGACAG 61.727 66.667 0.00 0.00 0.00 3.51
1204 1232 3.134804 CCTCCTCGTTGGTCTGGATATTT 59.865 47.826 0.00 0.00 37.07 1.40
1228 1256 0.928229 CACGTACCAGCTTAATCGCC 59.072 55.000 0.00 0.00 0.00 5.54
1266 1294 2.949451 TCAGAAAGATCCGAGCAGTC 57.051 50.000 0.00 0.00 0.00 3.51
1290 1318 0.101399 CAGCAGCAGTACTACTCGGG 59.899 60.000 0.00 0.00 0.00 5.14
1368 1396 1.679153 GGAGCAGTACTACTCAGGAGC 59.321 57.143 21.94 7.36 34.48 4.70
1370 1398 2.309162 ACAGGAGCAGTACTACTCAGGA 59.691 50.000 21.94 0.00 37.53 3.86
1371 1399 2.729194 ACAGGAGCAGTACTACTCAGG 58.271 52.381 21.94 15.69 37.53 3.86
1372 1400 3.880490 CCTACAGGAGCAGTACTACTCAG 59.120 52.174 21.94 16.25 37.53 3.35
1373 1401 3.522343 TCCTACAGGAGCAGTACTACTCA 59.478 47.826 21.94 3.55 37.53 3.41
1374 1402 4.153673 TCCTACAGGAGCAGTACTACTC 57.846 50.000 13.92 13.92 37.53 2.59
1406 1446 0.098376 GCTTTGAGAAGAGCGGCATG 59.902 55.000 1.45 0.00 34.71 4.06
1426 1466 1.210538 AGCATCCATCCAGAGCTCAA 58.789 50.000 17.77 0.69 0.00 3.02
1427 1467 2.926539 AGCATCCATCCAGAGCTCA 58.073 52.632 17.77 0.00 0.00 4.26
1428 1468 3.610637 GAGCATCCATCCAGAGCTC 57.389 57.895 5.27 5.27 43.95 4.09
1429 1469 0.759959 CAGAGCATCCATCCAGAGCT 59.240 55.000 0.00 0.00 38.43 4.09
1474 1529 5.274822 AGTCCAAATTGTTCATCCATCCAT 58.725 37.500 0.00 0.00 0.00 3.41
1475 1530 4.676109 AGTCCAAATTGTTCATCCATCCA 58.324 39.130 0.00 0.00 0.00 3.41
1476 1531 5.888161 ACTAGTCCAAATTGTTCATCCATCC 59.112 40.000 0.00 0.00 0.00 3.51
1477 1532 7.121168 TCAACTAGTCCAAATTGTTCATCCATC 59.879 37.037 0.00 0.00 0.00 3.51
1532 1587 0.580104 GTCCAACGAAGTCAACCACG 59.420 55.000 0.00 0.00 45.00 4.94
1544 1599 3.914364 GCATAAAAAGCTCAAGTCCAACG 59.086 43.478 0.00 0.00 0.00 4.10
1552 1607 3.233578 CGAAAGCGCATAAAAAGCTCAA 58.766 40.909 11.47 0.00 40.78 3.02
1564 1619 2.286833 GCATAGATTAACCGAAAGCGCA 59.713 45.455 11.47 0.00 35.83 6.09
1566 1621 3.802139 TCTGCATAGATTAACCGAAAGCG 59.198 43.478 0.00 0.00 37.24 4.68
1632 1689 9.772973 TGTATCTGCCGTTCATATTTTATTACT 57.227 29.630 0.00 0.00 0.00 2.24
1659 1716 5.422214 TTCTCATTCCTCTCCTGGTTTAC 57.578 43.478 0.00 0.00 0.00 2.01
1715 1772 2.267681 GACTGTCACTCCGGGCTACG 62.268 65.000 0.00 0.00 43.80 3.51
1869 1926 5.596836 TTTTCCTGCATGAACAAGAAAGT 57.403 34.783 3.69 0.00 32.96 2.66
1995 2052 5.970317 TGTCAAACCACTAGTTCTATCGA 57.030 39.130 0.00 0.00 37.88 3.59
1996 2053 7.036220 AGATTGTCAAACCACTAGTTCTATCG 58.964 38.462 0.00 0.00 37.88 2.92
2199 2259 5.708544 AGAAGGGATGGCATCAAATGATTA 58.291 37.500 27.39 0.00 31.21 1.75
2212 2272 0.035056 AAGGCGACAAGAAGGGATGG 60.035 55.000 0.00 0.00 0.00 3.51
2216 2276 1.004918 ACGAAGGCGACAAGAAGGG 60.005 57.895 0.00 0.00 41.64 3.95
2281 2341 8.281531 TGAGGTCCATGTAAATTAATCAAGGAT 58.718 33.333 3.71 0.00 32.87 3.24
2320 2382 2.185004 AAATGTGCGTTAGAGTGGCT 57.815 45.000 0.00 0.00 0.00 4.75
2326 2388 5.298276 AGGAAAAGTGAAAATGTGCGTTAGA 59.702 36.000 0.00 0.00 0.00 2.10
2328 2390 5.508200 AGGAAAAGTGAAAATGTGCGTTA 57.492 34.783 0.00 0.00 0.00 3.18
2334 2396 5.759763 GCAATGGAAGGAAAAGTGAAAATGT 59.240 36.000 0.00 0.00 0.00 2.71
2337 2418 5.612725 AGCAATGGAAGGAAAAGTGAAAA 57.387 34.783 0.00 0.00 0.00 2.29
2367 2448 9.831737 GAGCAAAATCATAATGTATGTATGACC 57.168 33.333 0.00 0.00 40.00 4.02
2389 2471 4.154015 CACATACGACAAAAATGAGGAGCA 59.846 41.667 0.00 0.00 0.00 4.26
2406 2488 6.951643 ACAAAGAAAAAGACGGTACACATAC 58.048 36.000 0.00 0.00 0.00 2.39
2416 2498 8.290325 AGCTAGGAATAAACAAAGAAAAAGACG 58.710 33.333 0.00 0.00 0.00 4.18
2455 2539 1.193323 AGTGGGAGAGTGCAGATCAG 58.807 55.000 0.00 0.00 0.00 2.90
2457 2541 1.277557 ACAAGTGGGAGAGTGCAGATC 59.722 52.381 0.00 0.00 0.00 2.75
2465 2549 6.039941 ACTCGATTTATCTACAAGTGGGAGAG 59.960 42.308 0.00 0.00 0.00 3.20
2466 2550 5.892119 ACTCGATTTATCTACAAGTGGGAGA 59.108 40.000 0.00 0.00 0.00 3.71
2503 2587 3.673902 TCGATGCAGAAATGACTTGGAA 58.326 40.909 0.00 0.00 0.00 3.53
2560 2644 1.407656 CCACCTGATTAGCCCGCCTA 61.408 60.000 0.00 0.00 0.00 3.93
2669 2753 9.832445 GACCAAAATCTATAACATAGACCTGAA 57.168 33.333 0.00 0.00 0.00 3.02
2670 2754 9.213777 AGACCAAAATCTATAACATAGACCTGA 57.786 33.333 0.00 0.00 0.00 3.86
2709 2793 4.080919 TGTTGATGAGTTGAGGTATCCCTG 60.081 45.833 0.00 0.00 42.86 4.45
2721 2805 5.178096 TGTATGGGATGTGTTGATGAGTT 57.822 39.130 0.00 0.00 0.00 3.01
2730 2814 3.309296 CCTCTACCTGTATGGGATGTGT 58.691 50.000 0.00 0.00 41.11 3.72
2931 3016 2.163818 TCAAGTAAGAACACAGGGCG 57.836 50.000 0.00 0.00 0.00 6.13
2959 3044 5.415701 AGTCAAGTTTTTGTTCTCTCTGCAA 59.584 36.000 0.00 0.00 35.73 4.08
3004 3089 2.636647 TGCCAAGATGAGTGTTCACA 57.363 45.000 5.74 0.00 35.83 3.58
3061 3146 7.558444 ACAGGTGGAAGTTACAATGTAAAAGAA 59.442 33.333 7.48 0.00 0.00 2.52
3063 3148 7.272037 ACAGGTGGAAGTTACAATGTAAAAG 57.728 36.000 7.48 0.00 0.00 2.27
3113 3198 0.947244 CAGGGCAAGGATTATGACGC 59.053 55.000 0.00 0.00 0.00 5.19
3114 3199 0.947244 GCAGGGCAAGGATTATGACG 59.053 55.000 0.00 0.00 0.00 4.35
3121 3206 2.715336 AGAAGATATGCAGGGCAAGGAT 59.285 45.455 0.00 0.00 43.62 3.24
3164 3250 8.776376 ACTTTGTTCTGATCAACAACAAAAAT 57.224 26.923 28.46 21.87 44.19 1.82
3165 3251 7.061673 CGACTTTGTTCTGATCAACAACAAAAA 59.938 33.333 28.46 17.57 44.19 1.94
3170 3258 5.403897 TCGACTTTGTTCTGATCAACAAC 57.596 39.130 11.62 10.44 44.19 3.32
3171 3259 5.815222 TCTTCGACTTTGTTCTGATCAACAA 59.185 36.000 8.57 8.57 43.10 2.83
3248 3336 9.289303 CACAATAAGAATCCAGAAAATAAACCG 57.711 33.333 0.00 0.00 0.00 4.44
3289 3377 9.773328 AACAACGTTACATCTGATTCATTAATG 57.227 29.630 9.29 9.29 0.00 1.90
3310 3401 5.011090 AGGAAGGCTGAAAAGAAAACAAC 57.989 39.130 0.00 0.00 0.00 3.32
3423 3514 7.067008 GTGCCAATAACCAGTACAGACATTATT 59.933 37.037 0.00 0.00 0.00 1.40
3632 3730 8.457261 CCTAATCCTCTTCAAGAATGAAAACAG 58.543 37.037 0.00 0.00 44.64 3.16
3687 3785 5.013599 AGGAGGGAAGTTAATATCTCATGGC 59.986 44.000 0.00 0.00 0.00 4.40
3689 3787 6.270927 TGGAGGAGGGAAGTTAATATCTCATG 59.729 42.308 0.00 0.00 0.00 3.07
3770 3868 1.465187 GCGCCTGTAACCTTTAAAGCG 60.465 52.381 9.86 9.44 44.76 4.68
3790 3888 7.876936 AGGCATTATTCTAATATGAGCCATG 57.123 36.000 16.34 0.00 36.09 3.66
3910 4008 2.022129 GGTGAGTGCACGACGGAAG 61.022 63.158 12.01 0.00 46.09 3.46
3912 4010 2.787567 TTGGTGAGTGCACGACGGA 61.788 57.895 12.01 1.97 46.09 4.69
3913 4011 2.279851 TTGGTGAGTGCACGACGG 60.280 61.111 12.01 0.00 46.09 4.79
3914 4012 2.594962 GGTTGGTGAGTGCACGACG 61.595 63.158 12.01 0.00 46.09 5.12
3915 4013 1.092921 TTGGTTGGTGAGTGCACGAC 61.093 55.000 12.01 12.16 46.09 4.34
3981 4081 4.772100 ACCATGGCCCTGTAAAATATATGC 59.228 41.667 13.04 0.00 0.00 3.14
4076 4176 4.530710 ACAGTAATACTCGCAAGGAACA 57.469 40.909 0.00 0.00 38.47 3.18
4084 4198 3.259064 TGCCTGAAACAGTAATACTCGC 58.741 45.455 0.00 0.00 0.00 5.03
4096 4210 9.241317 CAATTACTCATCAATATTGCCTGAAAC 57.759 33.333 10.76 0.00 0.00 2.78
4312 4433 2.990967 CCCACGCTTGCAATGGGT 60.991 61.111 23.32 17.05 46.99 4.51
4413 4538 9.962783 AATATCAAGTCCTATACTACGAACAAC 57.037 33.333 0.00 0.00 37.50 3.32
4418 4543 8.913487 TCACAATATCAAGTCCTATACTACGA 57.087 34.615 0.00 0.00 37.50 3.43
4422 4547 9.159254 TCCAATCACAATATCAAGTCCTATACT 57.841 33.333 0.00 0.00 41.49 2.12
4477 4605 6.820656 CACATAGTTCCTCTTTTGCACTAGAT 59.179 38.462 0.00 0.00 0.00 1.98
4488 4616 5.020132 ACTAGTGAGCACATAGTTCCTCTT 58.980 41.667 0.00 0.00 0.00 2.85
4497 4625 8.621532 AAGAAAATTTGACTAGTGAGCACATA 57.378 30.769 0.00 0.00 0.00 2.29
4529 4657 2.143122 GAACAAGTCATGGACGCAAGA 58.857 47.619 0.00 0.00 43.62 3.02
4537 4665 7.538678 GCACAAGTTTATAAGAACAAGTCATGG 59.461 37.037 0.00 0.00 31.94 3.66
4559 4687 4.309099 GAATTTTGGCAAATGAGAGCACA 58.691 39.130 14.29 0.00 32.57 4.57
4567 4695 2.736192 GTGGGTCGAATTTTGGCAAATG 59.264 45.455 14.29 4.74 32.57 2.32
4601 4729 0.971386 CAGCTGGGAAATGGCAGTTT 59.029 50.000 5.57 0.00 0.00 2.66
4603 4731 0.896940 CACAGCTGGGAAATGGCAGT 60.897 55.000 19.93 0.00 0.00 4.40
4608 4736 0.037975 GGTTGCACAGCTGGGAAATG 60.038 55.000 23.23 8.70 0.00 2.32
4613 4741 2.776370 ATCAGGGTTGCACAGCTGGG 62.776 60.000 19.93 16.72 0.00 4.45
4614 4742 1.303888 ATCAGGGTTGCACAGCTGG 60.304 57.895 19.93 8.27 0.00 4.85
4618 4746 1.162698 CACTGATCAGGGTTGCACAG 58.837 55.000 26.08 0.00 35.19 3.66
4639 4767 4.081406 AGTATTTCTGCAAGCCACATGAA 58.919 39.130 0.00 0.00 0.00 2.57
4640 4768 3.689347 AGTATTTCTGCAAGCCACATGA 58.311 40.909 0.00 0.00 0.00 3.07
4689 4817 8.946085 CAGAGTGATAATACAAGCCTACAAAAA 58.054 33.333 0.00 0.00 0.00 1.94
4690 4818 8.100791 ACAGAGTGATAATACAAGCCTACAAAA 58.899 33.333 0.00 0.00 0.00 2.44
4691 4819 7.620880 ACAGAGTGATAATACAAGCCTACAAA 58.379 34.615 0.00 0.00 0.00 2.83
4692 4820 7.182817 ACAGAGTGATAATACAAGCCTACAA 57.817 36.000 0.00 0.00 0.00 2.41
4741 4869 8.062065 AGGAAAACAGAACATTCACAACTAAA 57.938 30.769 0.00 0.00 0.00 1.85
4744 4872 5.220854 CGAGGAAAACAGAACATTCACAACT 60.221 40.000 0.00 0.00 0.00 3.16
4796 4924 9.440773 TGAATCATGATGCCTATATACAAGAAC 57.559 33.333 9.46 0.00 0.00 3.01
4806 4934 7.116736 TGCAGATTATGAATCATGATGCCTAT 58.883 34.615 9.46 0.13 40.42 2.57
4808 4936 5.321927 TGCAGATTATGAATCATGATGCCT 58.678 37.500 9.46 2.47 40.42 4.75
4843 4971 3.561143 TGGAGTAATGTTGCTGGTGTTT 58.439 40.909 0.00 0.00 0.00 2.83
4846 4974 3.507233 ACAATGGAGTAATGTTGCTGGTG 59.493 43.478 0.00 0.00 0.00 4.17
4849 4977 5.771469 TGAAACAATGGAGTAATGTTGCTG 58.229 37.500 0.00 0.00 37.36 4.41
4850 4978 6.403866 TTGAAACAATGGAGTAATGTTGCT 57.596 33.333 0.00 0.00 37.36 3.91
4851 4979 5.119125 GCTTGAAACAATGGAGTAATGTTGC 59.881 40.000 0.00 0.00 37.36 4.17
4852 4980 6.449698 AGCTTGAAACAATGGAGTAATGTTG 58.550 36.000 0.00 0.00 37.36 3.33
4855 4983 6.917533 AGAAGCTTGAAACAATGGAGTAATG 58.082 36.000 2.10 0.00 0.00 1.90
4857 4985 6.959639 AAGAAGCTTGAAACAATGGAGTAA 57.040 33.333 2.10 0.00 0.00 2.24
4858 4986 7.224297 AGTAAGAAGCTTGAAACAATGGAGTA 58.776 34.615 2.10 0.00 0.00 2.59
4859 4987 6.064717 AGTAAGAAGCTTGAAACAATGGAGT 58.935 36.000 2.10 0.00 0.00 3.85
4860 4988 6.429385 AGAGTAAGAAGCTTGAAACAATGGAG 59.571 38.462 2.10 0.00 0.00 3.86
4861 4989 6.205464 CAGAGTAAGAAGCTTGAAACAATGGA 59.795 38.462 2.10 0.00 0.00 3.41
4895 5028 2.286294 GCCAGATATCTGAACAACAGCG 59.714 50.000 30.40 13.43 46.59 5.18
4991 5124 1.070577 CGTGAAGGCTCAAAAGTGTCG 60.071 52.381 0.00 0.00 31.88 4.35
5114 5247 1.227263 CGGGTTAGATGAGTGCCGG 60.227 63.158 0.00 0.00 0.00 6.13
5120 5253 4.334759 TCGTAGTTCTTCGGGTTAGATGAG 59.665 45.833 0.00 0.00 0.00 2.90
5177 5310 1.752358 GAGCCCTCTCATCGCCATCA 61.752 60.000 0.00 0.00 39.16 3.07
5231 5364 9.580916 GATTATAATTTATACACAGCACACGTG 57.419 33.333 15.48 15.48 40.32 4.49
5306 5439 2.480416 GCACTTCACATCCTCCTCGTAG 60.480 54.545 0.00 0.00 0.00 3.51
5344 5477 0.250338 GTGTCCAGAAGACCACCACC 60.250 60.000 0.00 0.00 45.68 4.61
5345 5478 0.600255 CGTGTCCAGAAGACCACCAC 60.600 60.000 0.00 0.00 45.68 4.16
5460 5593 0.458543 CTCGACAAGCGCCACATAGT 60.459 55.000 2.29 0.00 40.61 2.12
5461 5594 0.458543 ACTCGACAAGCGCCACATAG 60.459 55.000 2.29 0.00 40.61 2.23
5511 5644 0.037975 CAATGGCAACTGGACAAGGC 60.038 55.000 0.00 0.00 38.69 4.35
5607 5740 8.220434 CCAAATTTGTAATTTGTTCGATGAACC 58.780 33.333 16.73 0.00 41.35 3.62
5619 5752 8.916628 AATGTTACCAGCCAAATTTGTAATTT 57.083 26.923 16.73 1.41 0.00 1.82
5620 5753 8.916628 AAATGTTACCAGCCAAATTTGTAATT 57.083 26.923 16.73 0.42 0.00 1.40
5621 5754 7.606073 GGAAATGTTACCAGCCAAATTTGTAAT 59.394 33.333 16.73 0.00 0.00 1.89
5622 5755 6.931840 GGAAATGTTACCAGCCAAATTTGTAA 59.068 34.615 16.73 5.87 0.00 2.41
5623 5756 6.268847 AGGAAATGTTACCAGCCAAATTTGTA 59.731 34.615 16.73 0.00 0.00 2.41
5642 5775 7.615365 TCAAAGGCACATTAATAGTCAGGAAAT 59.385 33.333 0.00 0.00 0.00 2.17
5672 5805 1.851658 AAAAAGCCACACGACATTGC 58.148 45.000 0.00 0.00 0.00 3.56
5695 5829 3.889196 TGCCACTTTACGAAACACATC 57.111 42.857 0.00 0.00 0.00 3.06
5704 5838 5.107220 ACGTTAAAAGAGATGCCACTTTACG 60.107 40.000 0.00 0.00 40.59 3.18
5709 5843 3.997021 CAGACGTTAAAAGAGATGCCACT 59.003 43.478 0.00 0.00 0.00 4.00
5713 5847 3.424962 GGCACAGACGTTAAAAGAGATGC 60.425 47.826 0.00 0.00 0.00 3.91
5714 5848 3.181530 CGGCACAGACGTTAAAAGAGATG 60.182 47.826 0.00 0.00 0.00 2.90
5717 5853 2.856091 CGGCACAGACGTTAAAAGAG 57.144 50.000 0.00 0.00 0.00 2.85
5758 5894 4.685169 AACAACATAGGTTTGCGATCAG 57.315 40.909 0.00 0.00 34.21 2.90
5763 5899 5.434514 GCAAATAACAACATAGGTTTGCG 57.565 39.130 5.09 0.00 41.01 4.85
5793 5938 6.489127 AATAAACACGCATACTTGTGCTAA 57.511 33.333 0.00 0.00 42.88 3.09
5901 6418 1.834188 CTAAATGAAGGGCCGTGGTT 58.166 50.000 0.00 0.00 0.00 3.67
5905 6422 1.173913 GTTGCTAAATGAAGGGCCGT 58.826 50.000 0.00 0.00 0.00 5.68
5907 6424 0.179137 GCGTTGCTAAATGAAGGGCC 60.179 55.000 0.00 0.00 0.00 5.80
6116 6887 4.097361 GGTCCGGGAGCCACTTCC 62.097 72.222 15.31 0.00 36.46 3.46
6117 6888 3.319198 TGGTCCGGGAGCCACTTC 61.319 66.667 22.54 0.00 0.00 3.01
6121 6892 2.933287 AATGTGGTCCGGGAGCCA 60.933 61.111 22.54 18.96 0.00 4.75
6122 6893 2.438434 CAATGTGGTCCGGGAGCC 60.438 66.667 22.54 14.80 0.00 4.70
6123 6894 1.450312 CTCAATGTGGTCCGGGAGC 60.450 63.158 19.10 19.10 0.00 4.70
6124 6895 1.450312 GCTCAATGTGGTCCGGGAG 60.450 63.158 0.00 0.00 0.00 4.30
6125 6896 2.668632 GCTCAATGTGGTCCGGGA 59.331 61.111 0.00 0.00 0.00 5.14
6138 6909 2.725312 GGCTCTCCACATCGGCTCA 61.725 63.158 0.00 0.00 33.14 4.26
6144 6915 0.755698 TAGTCCGGGCTCTCCACATC 60.756 60.000 14.54 0.00 34.36 3.06
6170 6945 4.809496 CCATGGCCGCCTCAGCTT 62.809 66.667 11.61 0.00 36.60 3.74
6189 6964 4.168088 AGGTCAAAAAGGAAGAAGGGAGAA 59.832 41.667 0.00 0.00 0.00 2.87
6191 6966 3.823304 CAGGTCAAAAAGGAAGAAGGGAG 59.177 47.826 0.00 0.00 0.00 4.30
6193 6968 3.823304 CTCAGGTCAAAAAGGAAGAAGGG 59.177 47.826 0.00 0.00 0.00 3.95
6211 6986 1.901591 ACTGGCATGTTCAACCTCAG 58.098 50.000 0.00 0.00 0.00 3.35
6212 6987 3.719268 ATACTGGCATGTTCAACCTCA 57.281 42.857 0.00 0.00 0.00 3.86
6213 6988 4.009675 TCAATACTGGCATGTTCAACCTC 58.990 43.478 0.00 0.00 0.00 3.85
6214 6989 3.758554 GTCAATACTGGCATGTTCAACCT 59.241 43.478 0.00 0.00 0.00 3.50
6229 7023 6.206634 TCCTTTCACAACCATCTTGTCAATAC 59.793 38.462 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.