Multiple sequence alignment - TraesCS3A01G251100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G251100 chr3A 100.000 5353 0 0 1 5353 470105880 470100528 0.000000e+00 9886.0
1 TraesCS3A01G251100 chr3B 94.019 4748 156 52 589 5271 450855201 450850517 0.000000e+00 7077.0
2 TraesCS3A01G251100 chr3B 81.557 244 35 10 127 366 793482187 793481950 5.470000e-45 193.0
3 TraesCS3A01G251100 chr3B 80.478 251 35 8 127 366 162480848 162481095 4.260000e-41 180.0
4 TraesCS3A01G251100 chr3B 80.080 251 36 8 127 366 458070536 458070289 1.980000e-39 174.0
5 TraesCS3A01G251100 chr3B 85.000 60 7 2 3735 3793 254193190 254193132 5.790000e-05 60.2
6 TraesCS3A01G251100 chr3D 97.241 2392 49 9 782 3160 352153678 352151291 0.000000e+00 4036.0
7 TraesCS3A01G251100 chr3D 91.757 1286 77 15 4016 5279 352150394 352149116 0.000000e+00 1760.0
8 TraesCS3A01G251100 chr3D 98.118 850 13 3 3162 4009 352151317 352150469 0.000000e+00 1478.0
9 TraesCS3A01G251100 chr3D 91.681 565 34 10 12 564 352155021 352154458 0.000000e+00 771.0
10 TraesCS3A01G251100 chr3D 92.647 272 16 3 560 830 352154313 352154045 6.500000e-104 388.0
11 TraesCS3A01G251100 chr3D 98.492 199 3 0 815 1013 352154033 352153835 8.530000e-93 351.0
12 TraesCS3A01G251100 chr3D 81.959 194 21 10 425 606 82947552 82947361 9.290000e-33 152.0
13 TraesCS3A01G251100 chr3D 98.246 57 1 0 3930 3986 352150447 352150391 3.410000e-17 100.0
14 TraesCS3A01G251100 chr3D 100.000 28 0 0 3387 3414 352150470 352150443 1.000000e-02 52.8
15 TraesCS3A01G251100 chr4D 78.061 392 70 12 129 517 351523510 351523888 3.220000e-57 233.0
16 TraesCS3A01G251100 chr4D 81.771 192 21 11 425 606 213200160 213199973 1.200000e-31 148.0
17 TraesCS3A01G251100 chr4D 91.379 58 5 0 3738 3795 433028046 433027989 4.440000e-11 80.5
18 TraesCS3A01G251100 chr4A 82.353 255 30 8 123 366 652760358 652760108 1.950000e-49 207.0
19 TraesCS3A01G251100 chrUn 81.961 255 31 8 123 366 142741912 142741662 9.090000e-48 202.0
20 TraesCS3A01G251100 chr5D 80.859 256 30 11 124 366 84218244 84218493 3.290000e-42 183.0
21 TraesCS3A01G251100 chr5D 79.200 250 40 7 127 366 376769757 376770004 4.290000e-36 163.0
22 TraesCS3A01G251100 chr5D 82.632 190 25 5 425 606 426449387 426449198 1.540000e-35 161.0
23 TraesCS3A01G251100 chr5D 78.947 190 38 2 238 427 289686510 289686697 1.560000e-25 128.0
24 TraesCS3A01G251100 chr5D 92.727 55 2 2 7 59 272363809 272363755 1.600000e-10 78.7
25 TraesCS3A01G251100 chr2D 80.077 261 36 10 116 366 134461665 134461919 4.260000e-41 180.0
26 TraesCS3A01G251100 chr2D 80.711 197 25 10 425 611 366956459 366956266 2.010000e-29 141.0
27 TraesCS3A01G251100 chr2D 80.000 200 28 8 425 614 356735730 356735533 2.600000e-28 137.0
28 TraesCS3A01G251100 chr2B 82.500 200 23 6 177 366 630885076 630884879 1.190000e-36 165.0
29 TraesCS3A01G251100 chr2B 80.423 189 28 7 425 606 435520277 435520091 9.350000e-28 135.0
30 TraesCS3A01G251100 chr2B 89.286 56 6 0 3740 3795 259028266 259028321 2.670000e-08 71.3
31 TraesCS3A01G251100 chr6A 80.729 192 28 5 429 611 449824322 449824513 2.010000e-29 141.0
32 TraesCS3A01G251100 chr1D 80.628 191 27 7 425 606 238649277 238649466 7.230000e-29 139.0
33 TraesCS3A01G251100 chr7D 77.714 175 29 9 3739 3906 201196375 201196204 1.230000e-16 99.0
34 TraesCS3A01G251100 chr7D 92.857 56 2 2 2 55 621883557 621883612 4.440000e-11 80.5
35 TraesCS3A01G251100 chr7A 96.078 51 0 2 7 55 205167814 205167764 1.240000e-11 82.4
36 TraesCS3A01G251100 chr7A 88.136 59 5 2 3927 3984 407985869 407985926 9.620000e-08 69.4
37 TraesCS3A01G251100 chr6D 96.078 51 0 2 7 55 34019170 34019220 1.240000e-11 82.4
38 TraesCS3A01G251100 chr1A 96.000 50 2 0 7 56 251345833 251345882 1.240000e-11 82.4
39 TraesCS3A01G251100 chr1A 94.340 53 1 2 7 57 474641727 474641675 4.440000e-11 80.5
40 TraesCS3A01G251100 chr1A 90.164 61 4 2 2 60 584078829 584078889 1.600000e-10 78.7
41 TraesCS3A01G251100 chr5A 92.727 55 2 2 7 59 362176473 362176419 1.600000e-10 78.7
42 TraesCS3A01G251100 chr2A 100.000 29 0 0 3735 3763 307700547 307700575 3.000000e-03 54.7
43 TraesCS3A01G251100 chr4B 96.774 31 1 0 3739 3769 585962671 585962701 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G251100 chr3A 470100528 470105880 5352 True 9886.0 9886 100.00000 1 5353 1 chr3A.!!$R1 5352
1 TraesCS3A01G251100 chr3B 450850517 450855201 4684 True 7077.0 7077 94.01900 589 5271 1 chr3B.!!$R2 4682
2 TraesCS3A01G251100 chr3D 352149116 352155021 5905 True 1117.1 4036 96.02275 12 5279 8 chr3D.!!$R2 5267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 166 0.343372 TGCCCCTAGTTGGATCTCCT 59.657 55.000 0.00 0.00 38.35 3.69 F
162 167 1.274416 TGCCCCTAGTTGGATCTCCTT 60.274 52.381 0.00 0.00 38.35 3.36 F
1828 2409 0.961019 TTGGTTTGCAGGTGATCAGC 59.039 50.000 17.19 17.19 0.00 4.26 F
2827 3409 2.151502 TTTTGCTTTGGACCTCACCA 57.848 45.000 0.00 0.00 38.24 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1576 2156 1.337074 ACAAATGGCGCACAAATGGAG 60.337 47.619 10.83 0.0 0.00 3.86 R
2157 2739 2.355132 CAGCTGCATCCTTGAAGTCATC 59.645 50.000 0.00 0.0 30.22 2.92 R
3173 3773 0.105555 ATCAGGAGCAGGAGGGAGAG 60.106 60.000 0.00 0.0 0.00 3.20 R
4572 5265 1.600013 CGTCTAGTAGATGCAGTCGCT 59.400 52.381 6.45 0.0 39.64 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.631480 ACTAAGGTTAAGACACTTATTTTGGG 57.369 34.615 0.00 0.00 0.00 4.12
45 46 8.442374 ACTAAGGTTAAGACACTTATTTTGGGA 58.558 33.333 0.00 0.00 0.00 4.37
47 48 5.704053 AGGTTAAGACACTTATTTTGGGACG 59.296 40.000 0.00 0.00 0.00 4.79
109 113 6.922957 GTGATGCTCTAAGGATAGACTTCAAG 59.077 42.308 0.00 0.00 34.45 3.02
160 165 1.439543 ATGCCCCTAGTTGGATCTCC 58.560 55.000 0.00 0.00 38.35 3.71
161 166 0.343372 TGCCCCTAGTTGGATCTCCT 59.657 55.000 0.00 0.00 38.35 3.69
162 167 1.274416 TGCCCCTAGTTGGATCTCCTT 60.274 52.381 0.00 0.00 38.35 3.36
180 185 4.647611 TCCTTCGTTTGATTTGCTCCTAA 58.352 39.130 0.00 0.00 0.00 2.69
195 201 4.039852 TGCTCCTAATTTTGAAAACACCCC 59.960 41.667 0.00 0.00 0.00 4.95
215 221 3.495453 CCCGTTCTTCCCAAGTGAGTTTA 60.495 47.826 0.00 0.00 0.00 2.01
233 239 6.149474 TGAGTTTACTCCTCTTATGCTTTTGC 59.851 38.462 7.39 0.00 43.27 3.68
234 240 5.416013 AGTTTACTCCTCTTATGCTTTTGCC 59.584 40.000 0.00 0.00 46.87 4.52
236 242 2.310052 ACTCCTCTTATGCTTTTGCCCT 59.690 45.455 0.00 0.00 46.87 5.19
239 245 3.511146 TCCTCTTATGCTTTTGCCCTTTG 59.489 43.478 0.00 0.00 46.87 2.77
240 246 3.511146 CCTCTTATGCTTTTGCCCTTTGA 59.489 43.478 0.00 0.00 46.87 2.69
241 247 4.488879 CTCTTATGCTTTTGCCCTTTGAC 58.511 43.478 0.00 0.00 46.87 3.18
242 248 4.151883 TCTTATGCTTTTGCCCTTTGACT 58.848 39.130 0.00 0.00 46.87 3.41
244 250 1.484038 TGCTTTTGCCCTTTGACTGT 58.516 45.000 0.00 0.00 46.87 3.55
395 401 8.661352 AGCAACACAAGCTTATTAACATTTTT 57.339 26.923 0.00 0.00 39.87 1.94
475 481 8.284945 ACATGCACATATAAGTGATGTCTTTT 57.715 30.769 12.15 0.00 42.05 2.27
477 483 9.016623 CATGCACATATAAGTGATGTCTTTTTG 57.983 33.333 12.15 0.00 42.05 2.44
487 493 7.775397 AGTGATGTCTTTTTGAACATTTTGG 57.225 32.000 0.00 0.00 0.00 3.28
510 517 9.801873 TTGGTATCTTATTTGCATTTTCTAAGC 57.198 29.630 0.00 0.00 0.00 3.09
567 728 6.426587 AGGATAAAAGCATAAGAGGAGCAAA 58.573 36.000 0.00 0.00 0.00 3.68
570 731 5.990120 AAAAGCATAAGAGGAGCAAACAT 57.010 34.783 0.00 0.00 0.00 2.71
596 757 2.163613 GGGCATAACTGAAGGTTTTCCG 59.836 50.000 0.00 0.00 46.35 4.30
617 778 4.517453 CCGAAACTAGGGACAAATCAAACA 59.483 41.667 0.00 0.00 0.00 2.83
621 782 7.333423 CGAAACTAGGGACAAATCAAACAGATA 59.667 37.037 0.00 0.00 35.39 1.98
626 787 6.735556 AGGGACAAATCAAACAGATAGGATT 58.264 36.000 0.00 0.00 35.39 3.01
707 869 3.118847 GGAGTAGGTAACCCGAGAAAAGG 60.119 52.174 0.00 0.00 35.12 3.11
735 898 6.183359 CGAAGTGTGAGATTAACTAACGAACC 60.183 42.308 0.00 0.00 32.75 3.62
1331 1909 1.691219 GCCCAACCTCCTGATTCCA 59.309 57.895 0.00 0.00 0.00 3.53
1450 2028 8.296713 TGGTTCTTAGAGCAATTTAATCACAAC 58.703 33.333 0.00 0.00 0.00 3.32
1576 2156 3.970640 AGATATCAGGTGAGGGTTCTTCC 59.029 47.826 5.32 0.00 0.00 3.46
1608 2189 4.023279 TGCGCCATTTGTATCATACCATTC 60.023 41.667 4.18 0.00 0.00 2.67
1615 2196 7.121759 CCATTTGTATCATACCATTCCTCATCC 59.878 40.741 0.00 0.00 0.00 3.51
1616 2197 6.762077 TTGTATCATACCATTCCTCATCCA 57.238 37.500 0.00 0.00 0.00 3.41
1624 2205 3.117512 ACCATTCCTCATCCATTGGGTAC 60.118 47.826 2.09 0.00 34.93 3.34
1625 2206 3.139025 CCATTCCTCATCCATTGGGTACT 59.861 47.826 2.09 0.00 34.93 2.73
1626 2207 3.931907 TTCCTCATCCATTGGGTACTG 57.068 47.619 2.09 0.00 34.93 2.74
1643 2224 4.160626 GGTACTGTGAGTTTCCTCTATGCT 59.839 45.833 0.00 0.00 38.61 3.79
1648 2229 6.820656 ACTGTGAGTTTCCTCTATGCTAATTG 59.179 38.462 0.00 0.00 38.61 2.32
1652 2233 4.811557 AGTTTCCTCTATGCTAATTGCGAC 59.188 41.667 0.00 0.00 46.63 5.19
1682 2263 2.727392 TAGGGACGCCGGTGGATTG 61.727 63.158 21.14 0.00 0.00 2.67
1782 2363 8.776061 TTAGGGGAAAAGGTGGATTTATTATG 57.224 34.615 0.00 0.00 0.00 1.90
1828 2409 0.961019 TTGGTTTGCAGGTGATCAGC 59.039 50.000 17.19 17.19 0.00 4.26
2062 2643 8.522830 CACATTAAAACTGTGTCCCAAATCTAT 58.477 33.333 0.39 0.00 39.30 1.98
2157 2739 4.083271 GGAAGAAGGATGAAACCAAAGACG 60.083 45.833 0.00 0.00 0.00 4.18
2302 2884 8.096414 AGCTGCAAATAAGGTTATTTTGTGAAT 58.904 29.630 1.02 0.00 40.37 2.57
2438 3020 5.418524 ACCATGCTATTGCTATTGTTTGTGA 59.581 36.000 0.00 0.00 40.48 3.58
2617 3199 2.880890 AGTGTCTGTCCATTTGAAGCAC 59.119 45.455 0.00 0.00 0.00 4.40
2827 3409 2.151502 TTTTGCTTTGGACCTCACCA 57.848 45.000 0.00 0.00 38.24 4.17
3048 3640 6.550854 TCAGGTCATTTTGGAATCTTCTGTTT 59.449 34.615 0.00 0.00 0.00 2.83
3154 3754 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
3155 3755 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
3156 3756 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3157 3757 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3158 3758 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3159 3759 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3160 3760 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3161 3761 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3162 3762 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3163 3763 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3164 3764 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3165 3765 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3166 3766 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3167 3767 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3168 3768 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3169 3769 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3170 3770 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3171 3771 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3172 3772 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3173 3773 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3174 3774 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3175 3775 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3176 3776 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3177 3777 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3178 3778 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
3179 3779 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
3180 3780 3.051803 TCTCTCTCTCTCTCTCTCTCCCT 60.052 52.174 0.00 0.00 0.00 4.20
3181 3781 3.309296 TCTCTCTCTCTCTCTCTCCCTC 58.691 54.545 0.00 0.00 0.00 4.30
3320 3920 3.766545 TCAAAGCCTTGGTATTCAGCTT 58.233 40.909 0.00 0.00 45.28 3.74
3454 4054 1.518133 GAGCTGCACGCAGAGGTAG 60.518 63.158 22.81 0.00 46.30 3.18
3689 4289 6.827727 TGGAGATTGTAAATAGCCTAAGGTC 58.172 40.000 0.00 0.00 0.00 3.85
3830 4431 8.413229 ACATAGTGAATTATATGGTTGTTTGGC 58.587 33.333 8.74 0.00 34.36 4.52
3974 4576 7.518188 TCCTCCAAAATTCATCTAGAATACCC 58.482 38.462 0.00 0.00 46.09 3.69
3991 4593 7.118723 AGAATACCCTTGAATCAAGCATGTTA 58.881 34.615 17.03 4.13 39.85 2.41
4011 4613 9.117145 CATGTTAGTAAGCACATTTAAACACAG 57.883 33.333 0.00 0.00 30.90 3.66
4355 5047 4.504132 GCTCCAGCGACCTAACAG 57.496 61.111 0.00 0.00 0.00 3.16
4499 5191 7.559897 AGTCTTTATTTTTGTTGGTCTTCTCCA 59.440 33.333 0.00 0.00 35.49 3.86
4572 5265 6.811665 CCTACAGTTTCGAAGTGATCATGTAA 59.188 38.462 14.59 0.00 35.76 2.41
4615 5308 0.912486 ACTGCCACTCCCCACTATTC 59.088 55.000 0.00 0.00 0.00 1.75
4768 5462 7.707104 ACAATTAAGTTTGTTGGTCTCTCTTG 58.293 34.615 5.32 0.00 36.43 3.02
4782 5476 0.720027 CTCTTGACATGCTGTGAGCG 59.280 55.000 0.00 0.00 46.26 5.03
4869 5567 2.799126 TCCACCGTGGATGCTTAAAT 57.201 45.000 16.73 0.00 42.67 1.40
4872 5570 1.405105 CACCGTGGATGCTTAAATGGG 59.595 52.381 0.00 0.00 0.00 4.00
4879 5577 0.687427 ATGCTTAAATGGGCGCCCTT 60.687 50.000 43.34 35.66 36.94 3.95
4888 5586 2.125326 GGGCGCCCTTAAATGTCCC 61.125 63.158 38.76 6.70 0.00 4.46
4908 5606 3.118738 CCCTTGACACGTTAAGGCTATCT 60.119 47.826 13.79 0.00 42.90 1.98
5000 5711 9.840427 ATTTAACGGAATTCAACTAGTTTGATG 57.160 29.630 5.07 0.00 43.99 3.07
5082 5816 1.411977 CCTGAACACCATGGTTTTGCA 59.588 47.619 20.84 15.69 0.00 4.08
5150 5884 4.496336 GAGCCCGGCCATGAGCTT 62.496 66.667 5.55 0.00 43.05 3.74
5156 5891 0.393537 CCGGCCATGAGCTTCTCTTT 60.394 55.000 2.24 0.00 43.05 2.52
5167 5902 1.932511 GCTTCTCTTTGCTCATCCTCG 59.067 52.381 0.00 0.00 0.00 4.63
5177 5912 1.186200 CTCATCCTCGGTGGTCTGAA 58.814 55.000 0.00 0.00 37.07 3.02
5186 5921 1.596934 GTGGTCTGAAGCCATCGGA 59.403 57.895 0.00 0.00 41.25 4.55
5197 5932 1.144936 CCATCGGAGCCTCCTTGTC 59.855 63.158 9.52 0.00 33.30 3.18
5202 5937 2.579738 GAGCCTCCTTGTCCGACC 59.420 66.667 0.00 0.00 0.00 4.79
5224 5960 4.035102 GGCCGCCTCTTCCCAGTT 62.035 66.667 0.71 0.00 0.00 3.16
5225 5961 2.666098 GGCCGCCTCTTCCCAGTTA 61.666 63.158 0.71 0.00 0.00 2.24
5252 5990 3.760035 GCGGGCTCCTCTTGACGA 61.760 66.667 0.00 0.00 0.00 4.20
5279 6017 0.798776 GGCGACCAAGTCTTGTGATG 59.201 55.000 11.61 0.00 0.00 3.07
5280 6018 1.608025 GGCGACCAAGTCTTGTGATGA 60.608 52.381 11.61 0.00 0.00 2.92
5281 6019 2.350522 GCGACCAAGTCTTGTGATGAT 58.649 47.619 11.61 0.00 0.00 2.45
5282 6020 2.349886 GCGACCAAGTCTTGTGATGATC 59.650 50.000 11.61 0.00 0.00 2.92
5283 6021 3.854666 CGACCAAGTCTTGTGATGATCT 58.145 45.455 11.61 0.00 0.00 2.75
5284 6022 4.678044 GCGACCAAGTCTTGTGATGATCTA 60.678 45.833 11.61 0.00 0.00 1.98
5285 6023 5.039984 CGACCAAGTCTTGTGATGATCTAG 58.960 45.833 11.61 0.00 0.00 2.43
5286 6024 5.393569 CGACCAAGTCTTGTGATGATCTAGT 60.394 44.000 11.61 0.00 0.00 2.57
5287 6025 6.183360 CGACCAAGTCTTGTGATGATCTAGTA 60.183 42.308 11.61 0.00 0.00 1.82
5288 6026 6.868622 ACCAAGTCTTGTGATGATCTAGTAC 58.131 40.000 11.61 0.00 0.00 2.73
5289 6027 6.437477 ACCAAGTCTTGTGATGATCTAGTACA 59.563 38.462 11.61 0.00 0.00 2.90
5290 6028 7.124901 ACCAAGTCTTGTGATGATCTAGTACAT 59.875 37.037 11.61 4.63 0.00 2.29
5291 6029 7.651304 CCAAGTCTTGTGATGATCTAGTACATC 59.349 40.741 11.61 17.97 41.94 3.06
5292 6030 8.412456 CAAGTCTTGTGATGATCTAGTACATCT 58.588 37.037 22.02 7.23 42.05 2.90
5293 6031 9.634021 AAGTCTTGTGATGATCTAGTACATCTA 57.366 33.333 22.02 13.89 42.05 1.98
5294 6032 9.806448 AGTCTTGTGATGATCTAGTACATCTAT 57.194 33.333 22.02 4.90 42.05 1.98
5299 6037 9.579932 TGTGATGATCTAGTACATCTATTCACT 57.420 33.333 22.02 0.00 42.05 3.41
5314 6052 9.186323 CATCTATTCACTAAGTCATTTCCTACG 57.814 37.037 0.00 0.00 0.00 3.51
5315 6053 7.713750 TCTATTCACTAAGTCATTTCCTACGG 58.286 38.462 0.00 0.00 0.00 4.02
5316 6054 5.733620 TTCACTAAGTCATTTCCTACGGT 57.266 39.130 0.00 0.00 0.00 4.83
5317 6055 5.320549 TCACTAAGTCATTTCCTACGGTC 57.679 43.478 0.00 0.00 0.00 4.79
5318 6056 4.768448 TCACTAAGTCATTTCCTACGGTCA 59.232 41.667 0.00 0.00 0.00 4.02
5319 6057 4.863131 CACTAAGTCATTTCCTACGGTCAC 59.137 45.833 0.00 0.00 0.00 3.67
5320 6058 4.525487 ACTAAGTCATTTCCTACGGTCACA 59.475 41.667 0.00 0.00 0.00 3.58
5321 6059 3.314541 AGTCATTTCCTACGGTCACAC 57.685 47.619 0.00 0.00 0.00 3.82
5322 6060 2.897969 AGTCATTTCCTACGGTCACACT 59.102 45.455 0.00 0.00 0.00 3.55
5323 6061 2.993899 GTCATTTCCTACGGTCACACTG 59.006 50.000 0.00 0.00 0.00 3.66
5324 6062 2.028476 TCATTTCCTACGGTCACACTGG 60.028 50.000 0.00 0.00 0.00 4.00
5325 6063 0.682852 TTTCCTACGGTCACACTGGG 59.317 55.000 0.00 0.00 0.00 4.45
5326 6064 0.178955 TTCCTACGGTCACACTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
5327 6065 0.611062 TCCTACGGTCACACTGGGAG 60.611 60.000 0.00 0.00 0.00 4.30
5328 6066 0.611062 CCTACGGTCACACTGGGAGA 60.611 60.000 0.00 0.00 0.00 3.71
5329 6067 1.475403 CTACGGTCACACTGGGAGAT 58.525 55.000 0.00 0.00 0.00 2.75
5330 6068 1.405821 CTACGGTCACACTGGGAGATC 59.594 57.143 0.00 0.00 0.00 2.75
5331 6069 0.541998 ACGGTCACACTGGGAGATCA 60.542 55.000 0.00 0.00 0.00 2.92
5332 6070 0.174389 CGGTCACACTGGGAGATCAG 59.826 60.000 0.00 0.00 40.40 2.90
5334 6072 1.205893 GGTCACACTGGGAGATCAGTC 59.794 57.143 0.00 0.00 45.24 3.51
5335 6073 1.205893 GTCACACTGGGAGATCAGTCC 59.794 57.143 0.00 0.00 45.24 3.85
5336 6074 1.203174 TCACACTGGGAGATCAGTCCA 60.203 52.381 3.60 3.00 45.24 4.02
5337 6075 1.625315 CACACTGGGAGATCAGTCCAA 59.375 52.381 3.60 0.00 45.24 3.53
5338 6076 1.905215 ACACTGGGAGATCAGTCCAAG 59.095 52.381 4.20 4.20 45.24 3.61
5339 6077 0.908198 ACTGGGAGATCAGTCCAAGC 59.092 55.000 5.47 0.00 43.82 4.01
5340 6078 0.907486 CTGGGAGATCAGTCCAAGCA 59.093 55.000 3.60 0.00 38.52 3.91
5341 6079 1.280133 CTGGGAGATCAGTCCAAGCAA 59.720 52.381 3.60 0.00 38.52 3.91
5342 6080 1.918262 TGGGAGATCAGTCCAAGCAAT 59.082 47.619 3.60 0.00 38.52 3.56
5343 6081 2.309755 TGGGAGATCAGTCCAAGCAATT 59.690 45.455 3.60 0.00 38.52 2.32
5344 6082 2.686915 GGGAGATCAGTCCAAGCAATTG 59.313 50.000 0.00 0.00 38.52 2.32
5345 6083 2.686915 GGAGATCAGTCCAAGCAATTGG 59.313 50.000 7.72 0.39 43.40 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.863086 ACCTTAGTACAACTTTATACTGACACA 58.137 33.333 0.00 0.00 33.65 3.72
1 2 9.702494 AACCTTAGTACAACTTTATACTGACAC 57.298 33.333 0.00 0.00 33.65 3.67
44 45 3.959449 ACTCTTCCTAAATACCCCTCGTC 59.041 47.826 0.00 0.00 0.00 4.20
45 46 3.991683 ACTCTTCCTAAATACCCCTCGT 58.008 45.455 0.00 0.00 0.00 4.18
72 74 2.512896 AGAGCATCACCAATCATTCCCT 59.487 45.455 0.00 0.00 37.82 4.20
73 75 2.941480 AGAGCATCACCAATCATTCCC 58.059 47.619 0.00 0.00 37.82 3.97
76 78 5.378230 TCCTTAGAGCATCACCAATCATT 57.622 39.130 0.00 0.00 37.82 2.57
77 79 5.579753 ATCCTTAGAGCATCACCAATCAT 57.420 39.130 0.00 0.00 37.82 2.45
78 80 5.840693 TCTATCCTTAGAGCATCACCAATCA 59.159 40.000 0.00 0.00 37.82 2.57
79 81 6.014669 AGTCTATCCTTAGAGCATCACCAATC 60.015 42.308 0.00 0.00 37.82 2.67
80 82 5.843421 AGTCTATCCTTAGAGCATCACCAAT 59.157 40.000 0.00 0.00 37.82 3.16
124 129 4.017130 GGGGCATAGATTGAATTATCCCCT 60.017 45.833 5.31 0.00 45.64 4.79
160 165 7.594758 TCAAAATTAGGAGCAAATCAAACGAAG 59.405 33.333 0.00 0.00 0.00 3.79
161 166 7.429633 TCAAAATTAGGAGCAAATCAAACGAA 58.570 30.769 0.00 0.00 0.00 3.85
162 167 6.976088 TCAAAATTAGGAGCAAATCAAACGA 58.024 32.000 0.00 0.00 0.00 3.85
180 185 4.442332 GGAAGAACGGGGTGTTTTCAAAAT 60.442 41.667 0.00 0.00 42.09 1.82
195 201 4.377897 AGTAAACTCACTTGGGAAGAACG 58.622 43.478 0.00 0.00 0.00 3.95
215 221 2.310052 AGGGCAAAAGCATAAGAGGAGT 59.690 45.455 0.00 0.00 0.00 3.85
233 239 6.863275 AGTTTTCAAAGTAACAGTCAAAGGG 58.137 36.000 0.00 0.00 0.00 3.95
234 240 7.218204 CGAAGTTTTCAAAGTAACAGTCAAAGG 59.782 37.037 0.00 0.00 0.00 3.11
236 242 7.586747 ACGAAGTTTTCAAAGTAACAGTCAAA 58.413 30.769 0.00 0.00 37.78 2.69
239 245 8.170553 TGTTACGAAGTTTTCAAAGTAACAGTC 58.829 33.333 12.95 0.00 44.73 3.51
240 246 8.031848 TGTTACGAAGTTTTCAAAGTAACAGT 57.968 30.769 12.95 0.00 44.73 3.55
242 248 9.843334 ATTTGTTACGAAGTTTTCAAAGTAACA 57.157 25.926 12.95 12.95 46.54 2.41
315 321 9.002600 TGACATGCACATATAGGTGATATTTTC 57.997 33.333 21.10 11.95 41.32 2.29
321 327 6.774170 ACAAATGACATGCACATATAGGTGAT 59.226 34.615 21.10 8.79 41.32 3.06
332 338 4.788100 GTCGTGAATACAAATGACATGCAC 59.212 41.667 0.00 0.00 0.00 4.57
463 469 7.330262 ACCAAAATGTTCAAAAAGACATCACT 58.670 30.769 0.00 0.00 0.00 3.41
475 481 9.941325 ATGCAAATAAGATACCAAAATGTTCAA 57.059 25.926 0.00 0.00 0.00 2.69
545 557 7.088589 TGTTTGCTCCTCTTATGCTTTTATC 57.911 36.000 0.00 0.00 0.00 1.75
546 558 7.486647 CATGTTTGCTCCTCTTATGCTTTTAT 58.513 34.615 0.00 0.00 0.00 1.40
552 564 3.075866 GCATGTTTGCTCCTCTTATGC 57.924 47.619 0.00 0.00 45.77 3.14
570 731 4.007462 AAACCTTCAGTTATGCCCAAGCA 61.007 43.478 0.00 0.00 46.60 3.91
583 744 3.751698 CCCTAGTTTCGGAAAACCTTCAG 59.248 47.826 4.46 0.00 44.87 3.02
587 748 2.707257 TGTCCCTAGTTTCGGAAAACCT 59.293 45.455 4.46 1.98 44.87 3.50
596 757 6.877611 TCTGTTTGATTTGTCCCTAGTTTC 57.122 37.500 0.00 0.00 0.00 2.78
656 818 7.647907 TCTTCAATTGTAAACTTCCGACTAC 57.352 36.000 5.13 0.00 0.00 2.73
657 819 7.274904 CGATCTTCAATTGTAAACTTCCGACTA 59.725 37.037 5.13 0.00 0.00 2.59
675 837 3.698040 GGTTACCTACTCCACGATCTTCA 59.302 47.826 0.00 0.00 0.00 3.02
707 869 5.285607 CGTTAGTTAATCTCACACTTCGTCC 59.714 44.000 0.00 0.00 0.00 4.79
735 898 6.853872 CCAAAATTGCTTTGTCAATTGTCATG 59.146 34.615 6.21 4.48 43.56 3.07
1331 1909 8.378172 TGAATCTCAAGAGAAAAATGTAACGT 57.622 30.769 3.59 0.00 41.36 3.99
1450 2028 7.118245 GGCTTGTCCCTTCAAATTAAGAAAATG 59.882 37.037 0.00 0.00 0.00 2.32
1456 2034 4.524328 ACAGGCTTGTCCCTTCAAATTAAG 59.476 41.667 0.00 0.00 29.46 1.85
1576 2156 1.337074 ACAAATGGCGCACAAATGGAG 60.337 47.619 10.83 0.00 0.00 3.86
1608 2189 2.505407 TCACAGTACCCAATGGATGAGG 59.495 50.000 0.00 0.00 34.81 3.86
1615 2196 4.021102 AGGAAACTCACAGTACCCAATG 57.979 45.455 0.00 0.00 32.90 2.82
1643 2224 5.975344 CCTACATTAAGAGTCGTCGCAATTA 59.025 40.000 0.00 0.00 0.00 1.40
1648 2229 2.357009 TCCCTACATTAAGAGTCGTCGC 59.643 50.000 0.00 0.00 0.00 5.19
1652 2233 2.543238 GGCGTCCCTACATTAAGAGTCG 60.543 54.545 0.00 0.00 0.00 4.18
1682 2263 5.809001 TCCCAGATAATGCCAATGAGATAC 58.191 41.667 0.00 0.00 0.00 2.24
1782 2363 5.221009 GGAATCATCCTCTCAATGACAAAGC 60.221 44.000 0.00 0.00 42.93 3.51
1828 2409 2.616842 GTTTGGCCCAGTATTGATACCG 59.383 50.000 0.00 0.00 33.79 4.02
2157 2739 2.355132 CAGCTGCATCCTTGAAGTCATC 59.645 50.000 0.00 0.00 30.22 2.92
2468 3050 9.093458 TGATGCTCTGAAGTTGAGGATATAATA 57.907 33.333 0.00 0.00 41.51 0.98
2603 3185 2.855180 CATCACGTGCTTCAAATGGAC 58.145 47.619 11.67 0.00 0.00 4.02
2717 3299 1.371758 CCACTGGAGACACGACACG 60.372 63.158 0.00 0.00 35.60 4.49
2827 3409 4.290093 TGAGTTATGACCATGCTACTCCT 58.710 43.478 13.81 0.00 32.96 3.69
3154 3754 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3155 3755 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
3156 3756 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
3157 3757 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
3158 3758 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
3159 3759 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
3160 3760 3.309296 GAGGGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
3161 3761 2.370189 GGAGGGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
3162 3762 2.022035 AGGAGGGAGAGAGAGAGAGAGA 60.022 54.545 0.00 0.00 0.00 3.10
3163 3763 2.105477 CAGGAGGGAGAGAGAGAGAGAG 59.895 59.091 0.00 0.00 0.00 3.20
3164 3764 2.126882 CAGGAGGGAGAGAGAGAGAGA 58.873 57.143 0.00 0.00 0.00 3.10
3165 3765 1.477558 GCAGGAGGGAGAGAGAGAGAG 60.478 61.905 0.00 0.00 0.00 3.20
3166 3766 0.550914 GCAGGAGGGAGAGAGAGAGA 59.449 60.000 0.00 0.00 0.00 3.10
3167 3767 0.552848 AGCAGGAGGGAGAGAGAGAG 59.447 60.000 0.00 0.00 0.00 3.20
3168 3768 0.550914 GAGCAGGAGGGAGAGAGAGA 59.449 60.000 0.00 0.00 0.00 3.10
3169 3769 0.468029 GGAGCAGGAGGGAGAGAGAG 60.468 65.000 0.00 0.00 0.00 3.20
3170 3770 0.923729 AGGAGCAGGAGGGAGAGAGA 60.924 60.000 0.00 0.00 0.00 3.10
3171 3771 0.756442 CAGGAGCAGGAGGGAGAGAG 60.756 65.000 0.00 0.00 0.00 3.20
3172 3772 1.217747 TCAGGAGCAGGAGGGAGAGA 61.218 60.000 0.00 0.00 0.00 3.10
3173 3773 0.105555 ATCAGGAGCAGGAGGGAGAG 60.106 60.000 0.00 0.00 0.00 3.20
3174 3774 0.398239 CATCAGGAGCAGGAGGGAGA 60.398 60.000 0.00 0.00 0.00 3.71
3175 3775 2.042404 GCATCAGGAGCAGGAGGGAG 62.042 65.000 0.00 0.00 0.00 4.30
3176 3776 2.068821 GCATCAGGAGCAGGAGGGA 61.069 63.158 0.00 0.00 0.00 4.20
3177 3777 2.509916 GCATCAGGAGCAGGAGGG 59.490 66.667 0.00 0.00 0.00 4.30
3178 3778 2.326773 CTGGCATCAGGAGCAGGAGG 62.327 65.000 0.00 0.00 37.36 4.30
3179 3779 1.146485 CTGGCATCAGGAGCAGGAG 59.854 63.158 0.00 0.00 37.36 3.69
3180 3780 3.317109 CTGGCATCAGGAGCAGGA 58.683 61.111 0.00 0.00 37.36 3.86
3320 3920 0.609957 CATCCTTCCCAAGCTGTGCA 60.610 55.000 0.00 0.00 0.00 4.57
3454 4054 2.030185 TCAACTGTCTTCCGCTGAGTAC 60.030 50.000 0.00 0.00 0.00 2.73
3642 4242 9.886337 TCCATATGACCATAAGTACCTAGTTTA 57.114 33.333 3.65 0.00 0.00 2.01
3830 4431 7.951530 AATTTTATCTTTTTCCTGTGCACAG 57.048 32.000 35.15 35.15 43.40 3.66
3925 4526 8.398206 GGATTCTCATCCTTAGGAAATTTCCCC 61.398 44.444 29.69 16.22 45.69 4.81
3974 4576 6.744537 GTGCTTACTAACATGCTTGATTCAAG 59.255 38.462 19.92 19.92 43.57 3.02
3991 4593 6.935741 TGACTGTGTTTAAATGTGCTTACT 57.064 33.333 0.00 0.00 0.00 2.24
4011 4613 1.611043 GATGCGCAGAAAGCTTTGAC 58.389 50.000 18.30 2.73 42.61 3.18
4355 5047 2.800544 ACAGTGTACATTTCTGCGTGTC 59.199 45.455 10.92 0.00 33.12 3.67
4464 5156 7.043192 CCAACAAAAATAAAGACTGCACTGAAG 60.043 37.037 0.00 0.00 0.00 3.02
4499 5191 2.616842 ACGAAGAAAATCGGCAACTGTT 59.383 40.909 1.59 0.00 46.82 3.16
4572 5265 1.600013 CGTCTAGTAGATGCAGTCGCT 59.400 52.381 6.45 0.00 39.64 4.93
4615 5308 3.694072 TCTGGAACAAACCACACTGAAAG 59.306 43.478 0.00 0.00 38.70 2.62
4654 5347 4.222336 TCAAAAACCAATCACACCCATCT 58.778 39.130 0.00 0.00 0.00 2.90
4669 5362 6.183360 TGGTCCAGAAGGTACAAATCAAAAAC 60.183 38.462 0.00 0.00 35.89 2.43
4749 5443 4.843728 TGTCAAGAGAGACCAACAAACTT 58.156 39.130 0.00 0.00 37.73 2.66
4782 5476 3.942130 AAGCAAGTTAATTCTGGCACC 57.058 42.857 0.00 0.00 36.88 5.01
4811 5507 4.923871 GCACGAGAATGAACTGAAGAACTA 59.076 41.667 0.00 0.00 0.00 2.24
4820 5516 3.944055 ACACTAGCACGAGAATGAACT 57.056 42.857 0.00 0.00 0.00 3.01
4822 5518 4.381612 CCCTAACACTAGCACGAGAATGAA 60.382 45.833 0.00 0.00 0.00 2.57
4861 5559 0.033991 TAAGGGCGCCCATTTAAGCA 60.034 50.000 45.13 16.94 38.92 3.91
4869 5567 1.379309 GGACATTTAAGGGCGCCCA 60.379 57.895 45.13 27.20 38.92 5.36
4872 5570 0.455815 CAAGGGACATTTAAGGGCGC 59.544 55.000 0.00 0.00 0.00 6.53
4888 5586 4.744570 TGAGATAGCCTTAACGTGTCAAG 58.255 43.478 0.00 0.00 0.00 3.02
4908 5606 8.539770 TTGCAAGTTTGAAATGTTTAAACTGA 57.460 26.923 18.72 0.31 42.11 3.41
5116 5850 1.737363 GCTCTGTGCGTCCCTCTTAAG 60.737 57.143 0.00 0.00 0.00 1.85
5117 5851 0.246635 GCTCTGTGCGTCCCTCTTAA 59.753 55.000 0.00 0.00 0.00 1.85
5118 5852 1.605058 GGCTCTGTGCGTCCCTCTTA 61.605 60.000 0.00 0.00 44.05 2.10
5119 5853 2.659610 GCTCTGTGCGTCCCTCTT 59.340 61.111 0.00 0.00 0.00 2.85
5120 5854 3.386237 GGCTCTGTGCGTCCCTCT 61.386 66.667 0.00 0.00 44.05 3.69
5150 5884 1.205655 CACCGAGGATGAGCAAAGAGA 59.794 52.381 0.00 0.00 0.00 3.10
5156 5891 1.305297 AGACCACCGAGGATGAGCA 60.305 57.895 0.00 0.00 41.22 4.26
5167 5902 1.450312 CCGATGGCTTCAGACCACC 60.450 63.158 1.08 0.00 40.82 4.61
5177 5912 2.366167 AAGGAGGCTCCGATGGCT 60.366 61.111 27.11 6.39 42.75 4.75
5186 5921 2.203788 TGGTCGGACAAGGAGGCT 60.204 61.111 10.76 0.00 0.00 4.58
5202 5937 4.821589 GGAAGAGGCGGCCGAGTG 62.822 72.222 33.48 0.00 0.00 3.51
5224 5960 4.889112 AGCCCGCCTCCGACGATA 62.889 66.667 0.00 0.00 36.29 2.92
5242 5978 1.608717 CCCCCTCAGTCGTCAAGAGG 61.609 65.000 12.09 12.09 46.71 3.69
5244 5980 2.283529 GCCCCCTCAGTCGTCAAGA 61.284 63.158 0.00 0.00 0.00 3.02
5252 5990 3.322466 CTTGGTCGCCCCCTCAGT 61.322 66.667 0.00 0.00 0.00 3.41
5288 6026 9.186323 CGTAGGAAATGACTTAGTGAATAGATG 57.814 37.037 0.00 0.00 0.00 2.90
5310 6048 1.405821 GATCTCCCAGTGTGACCGTAG 59.594 57.143 0.00 0.00 0.00 3.51
5311 6049 1.272258 TGATCTCCCAGTGTGACCGTA 60.272 52.381 0.00 0.00 0.00 4.02
5312 6050 0.541998 TGATCTCCCAGTGTGACCGT 60.542 55.000 0.00 0.00 0.00 4.83
5313 6051 0.174389 CTGATCTCCCAGTGTGACCG 59.826 60.000 0.00 0.00 0.00 4.79
5314 6052 1.205893 GACTGATCTCCCAGTGTGACC 59.794 57.143 0.88 0.00 46.45 4.02
5315 6053 1.205893 GGACTGATCTCCCAGTGTGAC 59.794 57.143 0.88 0.00 46.45 3.67
5316 6054 1.203174 TGGACTGATCTCCCAGTGTGA 60.203 52.381 0.88 0.00 46.45 3.58
5317 6055 1.269958 TGGACTGATCTCCCAGTGTG 58.730 55.000 0.88 0.00 46.45 3.82
5318 6056 1.905215 CTTGGACTGATCTCCCAGTGT 59.095 52.381 0.88 0.00 46.45 3.55
5319 6057 1.406614 GCTTGGACTGATCTCCCAGTG 60.407 57.143 0.88 0.00 46.45 3.66
5321 6059 0.907486 TGCTTGGACTGATCTCCCAG 59.093 55.000 0.00 0.00 39.93 4.45
5322 6060 1.361204 TTGCTTGGACTGATCTCCCA 58.639 50.000 0.00 0.00 0.00 4.37
5323 6061 2.686915 CAATTGCTTGGACTGATCTCCC 59.313 50.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.