Multiple sequence alignment - TraesCS3A01G250000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G250000 chr3A 100.000 2597 0 0 1 2597 468517963 468515367 0.000000e+00 4796.0
1 TraesCS3A01G250000 chr3A 93.017 716 40 6 896 1605 468251825 468251114 0.000000e+00 1037.0
2 TraesCS3A01G250000 chr3A 80.556 108 16 4 408 512 681192776 681192671 7.710000e-11 78.7
3 TraesCS3A01G250000 chr3D 94.432 916 39 7 703 1618 350793465 350792562 0.000000e+00 1399.0
4 TraesCS3A01G250000 chr3D 93.899 754 39 4 858 1605 349974575 349973823 0.000000e+00 1131.0
5 TraesCS3A01G250000 chr3D 89.240 697 67 6 1 695 350794127 350793437 0.000000e+00 865.0
6 TraesCS3A01G250000 chr3B 95.087 692 29 3 928 1618 449203706 449203019 0.000000e+00 1085.0
7 TraesCS3A01G250000 chr3B 90.837 753 52 3 858 1605 448864587 448863847 0.000000e+00 992.0
8 TraesCS3A01G250000 chr3B 87.662 616 52 10 1986 2588 449202941 449202337 0.000000e+00 695.0
9 TraesCS3A01G250000 chr3B 83.557 298 44 4 1685 1978 507303245 507303541 9.160000e-70 274.0
10 TraesCS3A01G250000 chr3B 76.908 511 91 19 3 501 27929799 27930294 5.510000e-67 265.0
11 TraesCS3A01G250000 chr3B 95.652 69 3 0 1617 1685 449202996 449202928 7.600000e-21 111.0
12 TraesCS3A01G250000 chr7A 75.633 632 142 10 64 687 157203324 157203951 1.170000e-78 303.0
13 TraesCS3A01G250000 chrUn 85.560 277 34 5 1704 1976 103367075 103366801 4.230000e-73 285.0
14 TraesCS3A01G250000 chrUn 85.567 97 9 4 408 501 29139507 29139413 2.130000e-16 97.1
15 TraesCS3A01G250000 chr5B 84.354 294 40 5 1687 1976 273303186 273302895 1.520000e-72 283.0
16 TraesCS3A01G250000 chr2B 83.893 298 46 1 1683 1978 719560292 719559995 1.520000e-72 283.0
17 TraesCS3A01G250000 chr2D 83.838 297 43 4 1684 1976 81244792 81245087 7.080000e-71 278.0
18 TraesCS3A01G250000 chr2D 84.321 287 40 4 1696 1978 618330395 618330110 2.550000e-70 276.0
19 TraesCS3A01G250000 chr2D 83.502 297 41 7 1686 1978 432767370 432767078 1.180000e-68 270.0
20 TraesCS3A01G250000 chr2D 81.373 102 15 4 398 497 318593595 318593496 2.140000e-11 80.5
21 TraesCS3A01G250000 chr5D 76.686 519 101 10 2 513 129495626 129496131 1.180000e-68 270.0
22 TraesCS3A01G250000 chr1D 83.390 295 46 2 1685 1976 15052320 15052026 1.180000e-68 270.0
23 TraesCS3A01G250000 chr5A 83.278 299 43 6 1684 1978 37402885 37403180 4.260000e-68 268.0
24 TraesCS3A01G250000 chr4D 74.292 424 94 11 85 500 373852154 373852570 5.750000e-37 165.0
25 TraesCS3A01G250000 chr4B 82.727 110 15 4 408 514 452724116 452724008 7.650000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G250000 chr3A 468515367 468517963 2596 True 4796.000000 4796 100.000000 1 2597 1 chr3A.!!$R2 2596
1 TraesCS3A01G250000 chr3A 468251114 468251825 711 True 1037.000000 1037 93.017000 896 1605 1 chr3A.!!$R1 709
2 TraesCS3A01G250000 chr3D 350792562 350794127 1565 True 1132.000000 1399 91.836000 1 1618 2 chr3D.!!$R2 1617
3 TraesCS3A01G250000 chr3D 349973823 349974575 752 True 1131.000000 1131 93.899000 858 1605 1 chr3D.!!$R1 747
4 TraesCS3A01G250000 chr3B 448863847 448864587 740 True 992.000000 992 90.837000 858 1605 1 chr3B.!!$R1 747
5 TraesCS3A01G250000 chr3B 449202337 449203706 1369 True 630.333333 1085 92.800333 928 2588 3 chr3B.!!$R2 1660
6 TraesCS3A01G250000 chr7A 157203324 157203951 627 False 303.000000 303 75.633000 64 687 1 chr7A.!!$F1 623
7 TraesCS3A01G250000 chr5D 129495626 129496131 505 False 270.000000 270 76.686000 2 513 1 chr5D.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 795 0.031585 CGAGTGTCTGTCCGTTTGGA 59.968 55.0 0.0 0.0 43.88 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 2439 0.102481 CGTGAGTGGTTATCTCCCCG 59.898 60.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 148 2.986728 AGTTGTTAGGGAGGTGGATGTT 59.013 45.455 0.00 0.00 0.00 2.71
190 192 2.187946 CCCAGTAGCGCTTCCAGG 59.812 66.667 18.68 15.60 0.00 4.45
230 232 2.251371 GTTTCGAGTGTTGGCCGC 59.749 61.111 0.00 0.00 0.00 6.53
249 251 2.897350 GGCGGGGCGATGAAGAAG 60.897 66.667 0.00 0.00 0.00 2.85
323 333 1.078848 GCCTCATGGTCGTGCTTCT 60.079 57.895 0.00 0.00 35.27 2.85
377 387 1.610554 CGATGGTAAGGACGGGGTGT 61.611 60.000 0.00 0.00 0.00 4.16
385 395 1.212934 AGGACGGGGTGTAGGAGAGA 61.213 60.000 0.00 0.00 0.00 3.10
399 409 3.589641 AGGAGAGAGGGTAGATCTACGA 58.410 50.000 23.35 0.00 36.94 3.43
429 439 0.242825 CTAGGGTTTGCTCGTGTCGA 59.757 55.000 0.00 0.00 0.00 4.20
501 511 3.254657 CCACGGCTTCCACATTAAAAAGA 59.745 43.478 0.00 0.00 0.00 2.52
506 516 6.071391 ACGGCTTCCACATTAAAAAGAATGAT 60.071 34.615 3.27 0.00 38.83 2.45
514 524 5.248020 ACATTAAAAAGAATGATGCCCCACA 59.752 36.000 3.27 0.00 38.83 4.17
520 530 2.244510 AGAATGATGCCCCACATGGTTA 59.755 45.455 0.00 0.00 39.84 2.85
524 534 0.258774 ATGCCCCACATGGTTAGGAC 59.741 55.000 0.00 0.00 37.70 3.85
532 542 3.007940 CCACATGGTTAGGACTCTGACAA 59.992 47.826 0.00 0.00 31.86 3.18
542 552 3.965539 CTCTGACAAGCGGGGGCTG 62.966 68.421 0.00 0.00 0.00 4.85
597 607 1.278302 TTAGGTGCCCAGCTGCCATA 61.278 55.000 8.66 0.00 39.78 2.74
605 615 1.533219 CAGCTGCCATATGTCCCCA 59.467 57.895 0.00 0.00 0.00 4.96
607 617 0.630673 AGCTGCCATATGTCCCCAAA 59.369 50.000 1.24 0.00 0.00 3.28
608 618 1.006998 AGCTGCCATATGTCCCCAAAA 59.993 47.619 1.24 0.00 0.00 2.44
610 620 2.738743 CTGCCATATGTCCCCAAAACT 58.261 47.619 1.24 0.00 0.00 2.66
614 624 3.696045 CCATATGTCCCCAAAACTGACA 58.304 45.455 1.24 0.00 0.00 3.58
619 629 3.702792 TGTCCCCAAAACTGACAAGAAA 58.297 40.909 0.00 0.00 0.00 2.52
631 642 3.351416 AAGAAACGGGCGCGTTCC 61.351 61.111 36.64 27.93 0.00 3.62
647 658 1.461091 TTCCTGTCCGTTCGCTGTCT 61.461 55.000 0.00 0.00 0.00 3.41
652 663 0.520404 GTCCGTTCGCTGTCTGTCTA 59.480 55.000 0.00 0.00 0.00 2.59
657 668 2.987149 CGTTCGCTGTCTGTCTAAACAT 59.013 45.455 0.00 0.00 34.13 2.71
661 672 6.183360 CGTTCGCTGTCTGTCTAAACATAAAT 60.183 38.462 0.00 0.00 34.13 1.40
664 675 6.531594 TCGCTGTCTGTCTAAACATAAATCAG 59.468 38.462 0.00 0.00 34.13 2.90
665 676 6.237942 CGCTGTCTGTCTAAACATAAATCAGG 60.238 42.308 0.00 0.00 34.13 3.86
666 677 6.818644 GCTGTCTGTCTAAACATAAATCAGGA 59.181 38.462 0.00 0.00 34.13 3.86
667 678 7.010923 GCTGTCTGTCTAAACATAAATCAGGAG 59.989 40.741 0.00 0.00 34.13 3.69
668 679 6.818644 TGTCTGTCTAAACATAAATCAGGAGC 59.181 38.462 0.00 0.00 34.13 4.70
669 680 6.818644 GTCTGTCTAAACATAAATCAGGAGCA 59.181 38.462 0.00 0.00 34.13 4.26
670 681 7.334421 GTCTGTCTAAACATAAATCAGGAGCAA 59.666 37.037 0.00 0.00 34.13 3.91
671 682 7.550551 TCTGTCTAAACATAAATCAGGAGCAAG 59.449 37.037 0.00 0.00 34.13 4.01
672 683 7.168219 TGTCTAAACATAAATCAGGAGCAAGT 58.832 34.615 0.00 0.00 0.00 3.16
673 684 7.665559 TGTCTAAACATAAATCAGGAGCAAGTT 59.334 33.333 0.00 0.00 0.00 2.66
674 685 8.515414 GTCTAAACATAAATCAGGAGCAAGTTT 58.485 33.333 0.00 0.00 0.00 2.66
675 686 9.733556 TCTAAACATAAATCAGGAGCAAGTTTA 57.266 29.630 0.00 0.00 0.00 2.01
676 687 9.774742 CTAAACATAAATCAGGAGCAAGTTTAC 57.225 33.333 0.00 0.00 0.00 2.01
677 688 8.409358 AAACATAAATCAGGAGCAAGTTTACT 57.591 30.769 0.00 0.00 0.00 2.24
678 689 7.617041 ACATAAATCAGGAGCAAGTTTACTC 57.383 36.000 0.00 0.00 0.00 2.59
687 698 4.727475 GAGCAAGTTTACTCCTGAAATGC 58.273 43.478 0.00 0.00 0.00 3.56
688 699 4.144297 AGCAAGTTTACTCCTGAAATGCA 58.856 39.130 0.00 0.00 33.89 3.96
689 700 4.584325 AGCAAGTTTACTCCTGAAATGCAA 59.416 37.500 0.00 0.00 33.89 4.08
690 701 4.681483 GCAAGTTTACTCCTGAAATGCAAC 59.319 41.667 0.00 0.00 0.00 4.17
691 702 4.749245 AGTTTACTCCTGAAATGCAACG 57.251 40.909 0.00 0.00 0.00 4.10
692 703 3.502211 AGTTTACTCCTGAAATGCAACGG 59.498 43.478 0.00 0.00 0.00 4.44
693 704 2.107950 TACTCCTGAAATGCAACGGG 57.892 50.000 9.56 9.56 0.00 5.28
694 705 1.244019 ACTCCTGAAATGCAACGGGC 61.244 55.000 10.62 0.00 45.13 6.13
726 737 3.375782 AGTTTGCTCCTGAAATGCAAC 57.624 42.857 0.00 0.00 44.81 4.17
750 761 2.411806 GCCGAACGCGAAACAGATAAAA 60.412 45.455 15.93 0.00 40.82 1.52
754 765 6.016718 CCGAACGCGAAACAGATAAAATTTA 58.983 36.000 15.93 0.00 40.82 1.40
755 766 6.192137 CCGAACGCGAAACAGATAAAATTTAG 59.808 38.462 15.93 0.00 40.82 1.85
764 775 5.690865 ACAGATAAAATTTAGGGATGCGGA 58.309 37.500 0.00 0.00 0.00 5.54
765 776 5.531287 ACAGATAAAATTTAGGGATGCGGAC 59.469 40.000 0.00 0.00 0.00 4.79
767 778 2.702592 AAATTTAGGGATGCGGACGA 57.297 45.000 0.00 0.00 0.00 4.20
782 793 1.129326 GACGAGTGTCTGTCCGTTTG 58.871 55.000 0.00 0.00 42.08 2.93
783 794 0.249322 ACGAGTGTCTGTCCGTTTGG 60.249 55.000 0.00 0.00 30.41 3.28
784 795 0.031585 CGAGTGTCTGTCCGTTTGGA 59.968 55.000 0.00 0.00 43.88 3.53
797 808 1.153127 TTTGGACCGTTTGGCTCGT 60.153 52.632 0.00 0.00 39.70 4.18
820 831 1.374252 GACACACGCGGACCAGATT 60.374 57.895 12.47 0.00 0.00 2.40
831 842 3.555917 GGACCAGATTAGGTACGATCG 57.444 52.381 14.88 14.88 43.38 3.69
884 895 1.143969 AGCACGTAACGGAATAGCGC 61.144 55.000 0.00 0.00 0.00 5.92
1026 1043 2.610859 AAGGACCATGGAGGCGGT 60.611 61.111 21.47 0.00 43.14 5.68
1053 1070 0.382515 GGGAAGACGGATCTGACGAG 59.617 60.000 9.00 0.00 34.48 4.18
1117 1137 0.393537 GTCCTTCTGGCTGGTCATGG 60.394 60.000 0.00 0.00 0.00 3.66
1194 1214 1.375523 ATCCAACGACGACAAGCCC 60.376 57.895 0.00 0.00 0.00 5.19
1308 1340 2.202703 GACAACGGCCGCGTCTAT 60.203 61.111 30.84 9.32 0.00 1.98
1436 1468 4.955774 GGTGAACGTGACGGGCGT 62.956 66.667 10.66 0.00 45.07 5.68
1621 1677 4.693566 ACGTTTTGTTTTGTCTCAGTCTCA 59.306 37.500 0.00 0.00 0.00 3.27
1643 1699 6.004574 TCAGTAGATTCATATGGAGCTACGT 58.995 40.000 26.29 15.86 38.86 3.57
1674 1730 9.507329 ACACACAAGAATTACACAATAGATTCT 57.493 29.630 0.00 0.00 39.75 2.40
1675 1731 9.979270 CACACAAGAATTACACAATAGATTCTC 57.021 33.333 0.00 0.00 37.75 2.87
1676 1732 8.873830 ACACAAGAATTACACAATAGATTCTCG 58.126 33.333 0.00 0.00 37.75 4.04
1677 1733 8.873830 CACAAGAATTACACAATAGATTCTCGT 58.126 33.333 0.00 0.00 37.75 4.18
1678 1734 9.436957 ACAAGAATTACACAATAGATTCTCGTT 57.563 29.630 0.00 0.00 37.75 3.85
1681 1737 9.653287 AGAATTACACAATAGATTCTCGTTTGA 57.347 29.630 9.59 0.00 34.65 2.69
1682 1738 9.907576 GAATTACACAATAGATTCTCGTTTGAG 57.092 33.333 9.59 5.78 43.99 3.02
1683 1739 9.436957 AATTACACAATAGATTCTCGTTTGAGT 57.563 29.630 9.59 9.77 43.09 3.41
1684 1740 6.712241 ACACAATAGATTCTCGTTTGAGTG 57.288 37.500 9.59 0.00 43.09 3.51
1685 1741 5.120830 ACACAATAGATTCTCGTTTGAGTGC 59.879 40.000 9.59 0.00 43.09 4.40
1686 1742 4.327357 ACAATAGATTCTCGTTTGAGTGCG 59.673 41.667 9.59 0.00 43.09 5.34
1687 1743 2.724977 AGATTCTCGTTTGAGTGCGA 57.275 45.000 0.00 0.00 43.09 5.10
1688 1744 3.026630 AGATTCTCGTTTGAGTGCGAA 57.973 42.857 0.00 0.00 43.09 4.70
1689 1745 2.731976 AGATTCTCGTTTGAGTGCGAAC 59.268 45.455 0.00 0.00 43.09 3.95
1690 1746 1.214367 TTCTCGTTTGAGTGCGAACC 58.786 50.000 0.00 0.00 43.09 3.62
1691 1747 0.103390 TCTCGTTTGAGTGCGAACCA 59.897 50.000 0.00 0.00 43.09 3.67
1692 1748 0.934496 CTCGTTTGAGTGCGAACCAA 59.066 50.000 0.00 0.00 37.46 3.67
1693 1749 1.329292 CTCGTTTGAGTGCGAACCAAA 59.671 47.619 6.19 6.19 37.46 3.28
1694 1750 1.944024 TCGTTTGAGTGCGAACCAAAT 59.056 42.857 11.75 0.00 35.38 2.32
1695 1751 2.356382 TCGTTTGAGTGCGAACCAAATT 59.644 40.909 11.75 0.00 35.38 1.82
1696 1752 2.467305 CGTTTGAGTGCGAACCAAATTG 59.533 45.455 11.75 6.11 35.38 2.32
1697 1753 3.443976 GTTTGAGTGCGAACCAAATTGT 58.556 40.909 11.75 0.00 33.14 2.71
1698 1754 2.772568 TGAGTGCGAACCAAATTGTG 57.227 45.000 0.00 0.00 0.00 3.33
1699 1755 2.293170 TGAGTGCGAACCAAATTGTGA 58.707 42.857 0.00 0.00 0.00 3.58
1700 1756 2.884012 TGAGTGCGAACCAAATTGTGAT 59.116 40.909 0.00 0.00 0.00 3.06
1701 1757 3.317711 TGAGTGCGAACCAAATTGTGATT 59.682 39.130 0.00 0.00 0.00 2.57
1702 1758 4.202101 TGAGTGCGAACCAAATTGTGATTT 60.202 37.500 0.00 0.00 35.90 2.17
1716 1772 8.868522 AAATTGTGATTTGATGGTTAGAGAGA 57.131 30.769 0.00 0.00 34.26 3.10
1717 1773 7.856145 ATTGTGATTTGATGGTTAGAGAGAC 57.144 36.000 0.00 0.00 0.00 3.36
1718 1774 6.611613 TGTGATTTGATGGTTAGAGAGACT 57.388 37.500 0.00 0.00 0.00 3.24
1719 1775 6.401394 TGTGATTTGATGGTTAGAGAGACTG 58.599 40.000 0.00 0.00 0.00 3.51
1720 1776 6.014242 TGTGATTTGATGGTTAGAGAGACTGT 60.014 38.462 0.00 0.00 0.00 3.55
1721 1777 6.312426 GTGATTTGATGGTTAGAGAGACTGTG 59.688 42.308 0.00 0.00 0.00 3.66
1722 1778 4.808414 TTGATGGTTAGAGAGACTGTGG 57.192 45.455 0.00 0.00 0.00 4.17
1723 1779 3.779444 TGATGGTTAGAGAGACTGTGGT 58.221 45.455 0.00 0.00 0.00 4.16
1724 1780 4.930696 TGATGGTTAGAGAGACTGTGGTA 58.069 43.478 0.00 0.00 0.00 3.25
1725 1781 5.519808 TGATGGTTAGAGAGACTGTGGTAT 58.480 41.667 0.00 0.00 0.00 2.73
1726 1782 5.594725 TGATGGTTAGAGAGACTGTGGTATC 59.405 44.000 0.00 0.00 34.24 2.24
1727 1783 4.930696 TGGTTAGAGAGACTGTGGTATCA 58.069 43.478 0.00 0.00 36.27 2.15
1728 1784 4.705507 TGGTTAGAGAGACTGTGGTATCAC 59.294 45.833 0.00 0.00 43.87 3.06
1729 1785 4.951094 GGTTAGAGAGACTGTGGTATCACT 59.049 45.833 7.81 0.00 43.94 3.41
1730 1786 6.120905 GGTTAGAGAGACTGTGGTATCACTA 58.879 44.000 7.81 0.00 43.94 2.74
1731 1787 6.261381 GGTTAGAGAGACTGTGGTATCACTAG 59.739 46.154 7.81 5.92 43.94 2.57
1732 1788 4.204012 AGAGAGACTGTGGTATCACTAGC 58.796 47.826 7.81 0.00 43.94 3.42
1733 1789 3.292460 AGAGACTGTGGTATCACTAGCC 58.708 50.000 7.81 0.00 43.94 3.93
1734 1790 2.362717 GAGACTGTGGTATCACTAGCCC 59.637 54.545 7.81 0.33 43.94 5.19
1735 1791 2.108168 GACTGTGGTATCACTAGCCCA 58.892 52.381 7.81 0.00 43.94 5.36
1736 1792 2.700897 GACTGTGGTATCACTAGCCCAT 59.299 50.000 7.81 0.00 43.94 4.00
1737 1793 2.700897 ACTGTGGTATCACTAGCCCATC 59.299 50.000 7.81 0.00 43.94 3.51
1738 1794 2.700371 CTGTGGTATCACTAGCCCATCA 59.300 50.000 7.81 0.00 43.94 3.07
1739 1795 3.111484 TGTGGTATCACTAGCCCATCAA 58.889 45.455 7.81 0.00 43.94 2.57
1740 1796 3.134623 TGTGGTATCACTAGCCCATCAAG 59.865 47.826 7.81 0.00 43.94 3.02
1741 1797 2.705658 TGGTATCACTAGCCCATCAAGG 59.294 50.000 0.00 0.00 37.03 3.61
1742 1798 2.706190 GGTATCACTAGCCCATCAAGGT 59.294 50.000 0.00 0.00 34.66 3.50
1743 1799 3.136626 GGTATCACTAGCCCATCAAGGTT 59.863 47.826 0.00 0.00 34.66 3.50
1744 1800 4.385310 GGTATCACTAGCCCATCAAGGTTT 60.385 45.833 0.00 0.00 34.66 3.27
1745 1801 5.163237 GGTATCACTAGCCCATCAAGGTTTA 60.163 44.000 0.00 0.00 34.66 2.01
1746 1802 4.919774 TCACTAGCCCATCAAGGTTTAA 57.080 40.909 0.00 0.00 34.66 1.52
1747 1803 4.843728 TCACTAGCCCATCAAGGTTTAAG 58.156 43.478 0.00 0.00 34.66 1.85
1748 1804 4.288626 TCACTAGCCCATCAAGGTTTAAGT 59.711 41.667 0.00 0.00 34.66 2.24
1749 1805 4.636206 CACTAGCCCATCAAGGTTTAAGTC 59.364 45.833 0.00 0.00 34.66 3.01
1750 1806 3.087370 AGCCCATCAAGGTTTAAGTCC 57.913 47.619 0.00 0.00 34.66 3.85
1751 1807 2.649816 AGCCCATCAAGGTTTAAGTCCT 59.350 45.455 0.00 0.00 36.81 3.85
1752 1808 3.850173 AGCCCATCAAGGTTTAAGTCCTA 59.150 43.478 2.43 0.00 34.56 2.94
1753 1809 4.080299 AGCCCATCAAGGTTTAAGTCCTAG 60.080 45.833 2.43 0.00 34.56 3.02
1754 1810 4.324331 GCCCATCAAGGTTTAAGTCCTAGT 60.324 45.833 2.43 0.00 34.56 2.57
1755 1811 5.186198 CCCATCAAGGTTTAAGTCCTAGTG 58.814 45.833 2.43 0.00 34.56 2.74
1756 1812 4.636206 CCATCAAGGTTTAAGTCCTAGTGC 59.364 45.833 2.43 0.00 34.56 4.40
1757 1813 5.491982 CATCAAGGTTTAAGTCCTAGTGCT 58.508 41.667 2.43 0.00 34.56 4.40
1758 1814 5.148651 TCAAGGTTTAAGTCCTAGTGCTC 57.851 43.478 2.43 0.00 34.56 4.26
1759 1815 3.870633 AGGTTTAAGTCCTAGTGCTCG 57.129 47.619 0.29 0.00 33.04 5.03
1760 1816 2.094130 AGGTTTAAGTCCTAGTGCTCGC 60.094 50.000 0.29 0.00 33.04 5.03
1761 1817 2.353406 GGTTTAAGTCCTAGTGCTCGCA 60.353 50.000 0.00 0.00 0.00 5.10
1762 1818 3.522553 GTTTAAGTCCTAGTGCTCGCAT 58.477 45.455 0.00 0.00 0.00 4.73
1763 1819 4.441079 GGTTTAAGTCCTAGTGCTCGCATA 60.441 45.833 0.00 0.00 0.00 3.14
1764 1820 5.290386 GTTTAAGTCCTAGTGCTCGCATAT 58.710 41.667 0.00 0.00 0.00 1.78
1765 1821 5.531122 TTAAGTCCTAGTGCTCGCATATT 57.469 39.130 0.00 0.00 0.00 1.28
1766 1822 4.408182 AAGTCCTAGTGCTCGCATATTT 57.592 40.909 0.00 0.00 0.00 1.40
1767 1823 3.983741 AGTCCTAGTGCTCGCATATTTC 58.016 45.455 0.00 0.00 0.00 2.17
1768 1824 3.639094 AGTCCTAGTGCTCGCATATTTCT 59.361 43.478 0.00 0.00 0.00 2.52
1769 1825 4.827835 AGTCCTAGTGCTCGCATATTTCTA 59.172 41.667 0.00 0.00 0.00 2.10
1770 1826 5.048364 AGTCCTAGTGCTCGCATATTTCTAG 60.048 44.000 0.00 1.18 0.00 2.43
1771 1827 5.048643 GTCCTAGTGCTCGCATATTTCTAGA 60.049 44.000 12.40 0.00 0.00 2.43
1772 1828 5.535030 TCCTAGTGCTCGCATATTTCTAGAA 59.465 40.000 0.00 0.00 0.00 2.10
1773 1829 6.209589 TCCTAGTGCTCGCATATTTCTAGAAT 59.790 38.462 5.89 0.00 0.00 2.40
1774 1830 6.870965 CCTAGTGCTCGCATATTTCTAGAATT 59.129 38.462 5.89 5.55 0.00 2.17
1775 1831 7.386299 CCTAGTGCTCGCATATTTCTAGAATTT 59.614 37.037 5.89 0.00 0.00 1.82
1776 1832 7.559590 AGTGCTCGCATATTTCTAGAATTTT 57.440 32.000 5.89 0.00 0.00 1.82
1777 1833 7.989826 AGTGCTCGCATATTTCTAGAATTTTT 58.010 30.769 5.89 0.00 0.00 1.94
1797 1853 3.368321 TTCAGAATTTTCGACGATGCG 57.632 42.857 0.00 0.00 0.00 4.73
1798 1854 1.060553 TCAGAATTTTCGACGATGCGC 59.939 47.619 0.00 0.00 0.00 6.09
1799 1855 1.075542 AGAATTTTCGACGATGCGCA 58.924 45.000 14.96 14.96 0.00 6.09
1800 1856 1.665679 AGAATTTTCGACGATGCGCAT 59.334 42.857 25.66 25.66 0.00 4.73
1801 1857 2.029815 GAATTTTCGACGATGCGCATC 58.970 47.619 35.20 35.20 34.56 3.91
1802 1858 0.304705 ATTTTCGACGATGCGCATCC 59.695 50.000 37.37 25.83 34.40 3.51
1803 1859 1.016653 TTTTCGACGATGCGCATCCA 61.017 50.000 37.37 20.25 34.40 3.41
1804 1860 1.420641 TTTCGACGATGCGCATCCAG 61.421 55.000 37.37 28.31 34.40 3.86
1805 1861 2.557059 TTCGACGATGCGCATCCAGT 62.557 55.000 37.37 30.96 34.40 4.00
1806 1862 2.863853 CGACGATGCGCATCCAGTG 61.864 63.158 37.37 27.35 34.40 3.66
1807 1863 2.512286 ACGATGCGCATCCAGTGG 60.512 61.111 37.37 27.02 34.40 4.00
1808 1864 3.274586 CGATGCGCATCCAGTGGG 61.275 66.667 37.37 22.27 43.21 4.61
1818 1874 3.815717 TCCAGTGGGAGGAGACATT 57.184 52.632 9.92 0.00 38.64 2.71
1819 1875 1.573108 TCCAGTGGGAGGAGACATTC 58.427 55.000 9.92 0.00 38.64 2.67
1820 1876 1.079490 TCCAGTGGGAGGAGACATTCT 59.921 52.381 9.92 0.00 38.64 2.40
1821 1877 1.484240 CCAGTGGGAGGAGACATTCTC 59.516 57.143 0.00 0.00 38.51 2.87
1822 1878 1.135915 CAGTGGGAGGAGACATTCTCG 59.864 57.143 0.00 0.00 44.28 4.04
1823 1879 1.187087 GTGGGAGGAGACATTCTCGT 58.813 55.000 0.00 0.00 44.28 4.18
1828 1884 2.993545 GAGGAGACATTCTCGTCGATG 58.006 52.381 9.46 0.00 44.90 3.84
1829 1885 2.614520 GAGGAGACATTCTCGTCGATGA 59.385 50.000 7.21 7.21 44.90 2.92
1830 1886 2.356382 AGGAGACATTCTCGTCGATGAC 59.644 50.000 2.39 0.00 44.28 3.06
1842 1898 2.997485 TCGATGACGAGATGCCTATG 57.003 50.000 0.00 0.00 43.81 2.23
1843 1899 2.504367 TCGATGACGAGATGCCTATGA 58.496 47.619 0.00 0.00 43.81 2.15
1844 1900 3.084786 TCGATGACGAGATGCCTATGAT 58.915 45.455 0.00 0.00 43.81 2.45
1845 1901 3.119708 TCGATGACGAGATGCCTATGATG 60.120 47.826 0.00 0.00 43.81 3.07
1846 1902 3.119708 CGATGACGAGATGCCTATGATGA 60.120 47.826 0.00 0.00 42.66 2.92
1847 1903 3.650070 TGACGAGATGCCTATGATGAC 57.350 47.619 0.00 0.00 0.00 3.06
1848 1904 3.225940 TGACGAGATGCCTATGATGACT 58.774 45.455 0.00 0.00 0.00 3.41
1849 1905 3.638627 TGACGAGATGCCTATGATGACTT 59.361 43.478 0.00 0.00 0.00 3.01
1850 1906 4.233789 GACGAGATGCCTATGATGACTTC 58.766 47.826 0.00 0.00 0.00 3.01
1851 1907 3.240884 CGAGATGCCTATGATGACTTCG 58.759 50.000 0.00 0.00 0.00 3.79
1852 1908 3.304996 CGAGATGCCTATGATGACTTCGT 60.305 47.826 0.00 0.00 0.00 3.85
1853 1909 4.083271 CGAGATGCCTATGATGACTTCGTA 60.083 45.833 0.00 0.00 0.00 3.43
1854 1910 5.562890 CGAGATGCCTATGATGACTTCGTAA 60.563 44.000 0.00 0.00 0.00 3.18
1855 1911 6.161855 AGATGCCTATGATGACTTCGTAAA 57.838 37.500 0.00 0.00 0.00 2.01
1856 1912 6.763355 AGATGCCTATGATGACTTCGTAAAT 58.237 36.000 0.00 0.00 0.00 1.40
1857 1913 7.220030 AGATGCCTATGATGACTTCGTAAATT 58.780 34.615 0.00 0.00 0.00 1.82
1858 1914 7.716998 AGATGCCTATGATGACTTCGTAAATTT 59.283 33.333 0.00 0.00 0.00 1.82
1859 1915 7.624360 TGCCTATGATGACTTCGTAAATTTT 57.376 32.000 0.00 0.00 0.00 1.82
1860 1916 8.725405 TGCCTATGATGACTTCGTAAATTTTA 57.275 30.769 0.00 0.00 0.00 1.52
1861 1917 9.168451 TGCCTATGATGACTTCGTAAATTTTAA 57.832 29.630 0.00 0.00 0.00 1.52
1862 1918 9.651718 GCCTATGATGACTTCGTAAATTTTAAG 57.348 33.333 0.00 1.31 0.00 1.85
1880 1936 9.624373 AATTTTAAGATGATATGCTGACTCAGT 57.376 29.630 7.89 0.00 33.43 3.41
1881 1937 8.654230 TTTTAAGATGATATGCTGACTCAGTC 57.346 34.615 7.89 0.00 33.43 3.51
1882 1938 7.594351 TTAAGATGATATGCTGACTCAGTCT 57.406 36.000 6.33 0.00 33.43 3.24
1883 1939 6.482898 AAGATGATATGCTGACTCAGTCTT 57.517 37.500 6.33 4.38 33.43 3.01
1884 1940 6.482898 AGATGATATGCTGACTCAGTCTTT 57.517 37.500 6.33 0.00 33.43 2.52
1885 1941 6.514947 AGATGATATGCTGACTCAGTCTTTC 58.485 40.000 6.33 0.00 33.43 2.62
1886 1942 4.676546 TGATATGCTGACTCAGTCTTTCG 58.323 43.478 6.33 0.00 33.43 3.46
1887 1943 4.399303 TGATATGCTGACTCAGTCTTTCGA 59.601 41.667 6.33 0.00 33.43 3.71
1888 1944 3.667497 ATGCTGACTCAGTCTTTCGAA 57.333 42.857 6.33 0.00 33.43 3.71
1889 1945 3.018598 TGCTGACTCAGTCTTTCGAAG 57.981 47.619 6.33 0.00 33.43 3.79
1890 1946 2.362397 TGCTGACTCAGTCTTTCGAAGT 59.638 45.455 6.33 0.00 33.43 3.01
1891 1947 2.728839 GCTGACTCAGTCTTTCGAAGTG 59.271 50.000 6.33 0.00 33.43 3.16
1892 1948 2.728839 CTGACTCAGTCTTTCGAAGTGC 59.271 50.000 6.33 0.00 33.15 4.40
1893 1949 2.362397 TGACTCAGTCTTTCGAAGTGCT 59.638 45.455 6.33 0.00 33.15 4.40
1894 1950 2.983803 GACTCAGTCTTTCGAAGTGCTC 59.016 50.000 0.00 0.00 0.00 4.26
1895 1951 2.362397 ACTCAGTCTTTCGAAGTGCTCA 59.638 45.455 0.00 0.00 0.00 4.26
1896 1952 3.006323 ACTCAGTCTTTCGAAGTGCTCAT 59.994 43.478 0.00 0.00 0.00 2.90
1897 1953 4.218635 ACTCAGTCTTTCGAAGTGCTCATA 59.781 41.667 0.00 0.00 0.00 2.15
1898 1954 4.738124 TCAGTCTTTCGAAGTGCTCATAG 58.262 43.478 0.00 0.00 0.00 2.23
1899 1955 4.459337 TCAGTCTTTCGAAGTGCTCATAGA 59.541 41.667 0.00 0.00 0.00 1.98
1900 1956 4.797868 CAGTCTTTCGAAGTGCTCATAGAG 59.202 45.833 0.00 0.00 0.00 2.43
1901 1957 4.702612 AGTCTTTCGAAGTGCTCATAGAGA 59.297 41.667 0.00 0.00 0.00 3.10
1902 1958 5.359576 AGTCTTTCGAAGTGCTCATAGAGAT 59.640 40.000 0.00 0.00 0.00 2.75
1903 1959 6.544197 AGTCTTTCGAAGTGCTCATAGAGATA 59.456 38.462 0.00 0.00 0.00 1.98
1904 1960 6.855914 GTCTTTCGAAGTGCTCATAGAGATAG 59.144 42.308 0.00 0.00 0.00 2.08
1905 1961 5.697473 TTCGAAGTGCTCATAGAGATAGG 57.303 43.478 0.00 0.00 0.00 2.57
1906 1962 4.974399 TCGAAGTGCTCATAGAGATAGGA 58.026 43.478 0.00 0.00 0.00 2.94
1907 1963 5.565509 TCGAAGTGCTCATAGAGATAGGAT 58.434 41.667 0.00 0.00 0.00 3.24
1908 1964 6.007076 TCGAAGTGCTCATAGAGATAGGATT 58.993 40.000 0.00 0.00 0.00 3.01
1909 1965 6.491745 TCGAAGTGCTCATAGAGATAGGATTT 59.508 38.462 0.00 0.00 0.00 2.17
1910 1966 6.585702 CGAAGTGCTCATAGAGATAGGATTTG 59.414 42.308 0.00 0.00 0.00 2.32
1911 1967 5.792741 AGTGCTCATAGAGATAGGATTTGC 58.207 41.667 0.00 0.00 0.00 3.68
1912 1968 4.624882 GTGCTCATAGAGATAGGATTTGCG 59.375 45.833 0.00 0.00 0.00 4.85
1913 1969 4.281941 TGCTCATAGAGATAGGATTTGCGT 59.718 41.667 0.00 0.00 0.00 5.24
1914 1970 4.624882 GCTCATAGAGATAGGATTTGCGTG 59.375 45.833 0.00 0.00 0.00 5.34
1915 1971 5.777802 CTCATAGAGATAGGATTTGCGTGT 58.222 41.667 0.00 0.00 0.00 4.49
1916 1972 5.532557 TCATAGAGATAGGATTTGCGTGTG 58.467 41.667 0.00 0.00 0.00 3.82
1917 1973 3.895232 AGAGATAGGATTTGCGTGTGT 57.105 42.857 0.00 0.00 0.00 3.72
1918 1974 6.264518 TCATAGAGATAGGATTTGCGTGTGTA 59.735 38.462 0.00 0.00 0.00 2.90
1919 1975 4.683832 AGAGATAGGATTTGCGTGTGTAC 58.316 43.478 0.00 0.00 0.00 2.90
1929 1985 3.005823 CGTGTGTACGTTCGTAGGG 57.994 57.895 5.29 0.00 44.99 3.53
1930 1986 0.516877 CGTGTGTACGTTCGTAGGGA 59.483 55.000 5.29 0.00 44.99 4.20
1931 1987 1.131126 CGTGTGTACGTTCGTAGGGAT 59.869 52.381 5.29 0.00 44.99 3.85
1932 1988 2.523015 GTGTGTACGTTCGTAGGGATG 58.477 52.381 5.29 0.00 0.00 3.51
1933 1989 2.162208 GTGTGTACGTTCGTAGGGATGA 59.838 50.000 5.29 0.00 0.00 2.92
1934 1990 2.421073 TGTGTACGTTCGTAGGGATGAG 59.579 50.000 5.29 0.00 0.00 2.90
1935 1991 2.421424 GTGTACGTTCGTAGGGATGAGT 59.579 50.000 5.29 0.00 0.00 3.41
1936 1992 2.421073 TGTACGTTCGTAGGGATGAGTG 59.579 50.000 5.29 0.00 0.00 3.51
1937 1993 0.172803 ACGTTCGTAGGGATGAGTGC 59.827 55.000 0.00 0.00 0.00 4.40
1938 1994 0.172578 CGTTCGTAGGGATGAGTGCA 59.827 55.000 0.00 0.00 0.00 4.57
1939 1995 1.202417 CGTTCGTAGGGATGAGTGCAT 60.202 52.381 0.00 0.00 37.47 3.96
1940 1996 2.205074 GTTCGTAGGGATGAGTGCATG 58.795 52.381 0.00 0.00 34.11 4.06
1941 1997 0.104855 TCGTAGGGATGAGTGCATGC 59.895 55.000 11.82 11.82 41.60 4.06
1942 1998 0.179076 CGTAGGGATGAGTGCATGCA 60.179 55.000 18.46 18.46 43.84 3.96
1943 1999 1.303309 GTAGGGATGAGTGCATGCAC 58.697 55.000 37.87 37.87 43.84 4.57
1954 2010 3.510251 GTGCATGCACGTGTATATGAG 57.490 47.619 33.20 7.98 37.19 2.90
1955 2011 1.866601 TGCATGCACGTGTATATGAGC 59.133 47.619 18.46 17.44 0.00 4.26
1956 2012 1.866601 GCATGCACGTGTATATGAGCA 59.133 47.619 19.02 7.12 42.26 4.26
1957 2013 2.348872 GCATGCACGTGTATATGAGCAC 60.349 50.000 19.02 4.51 41.17 4.40
1958 2014 2.959507 TGCACGTGTATATGAGCACT 57.040 45.000 18.38 0.00 35.03 4.40
1959 2015 3.245518 TGCACGTGTATATGAGCACTT 57.754 42.857 18.38 0.00 35.03 3.16
1960 2016 2.929398 TGCACGTGTATATGAGCACTTG 59.071 45.455 18.38 8.15 35.03 3.16
1961 2017 3.575858 CACGTGTATATGAGCACTTGC 57.424 47.619 7.58 0.00 42.49 4.01
1962 2018 5.635599 GCACGTGTATATGAGCACTTGCG 62.636 52.174 18.38 0.00 45.75 4.85
1974 2030 2.607187 GCACTTGCGTCTATACTGTGT 58.393 47.619 0.00 0.00 0.00 3.72
1975 2031 2.993899 GCACTTGCGTCTATACTGTGTT 59.006 45.455 0.00 0.00 0.00 3.32
1976 2032 4.171005 GCACTTGCGTCTATACTGTGTTA 58.829 43.478 0.00 0.00 0.00 2.41
1977 2033 4.624024 GCACTTGCGTCTATACTGTGTTAA 59.376 41.667 0.00 0.00 0.00 2.01
1978 2034 5.291128 GCACTTGCGTCTATACTGTGTTAAT 59.709 40.000 0.00 0.00 0.00 1.40
1979 2035 6.183360 GCACTTGCGTCTATACTGTGTTAATT 60.183 38.462 0.00 0.00 0.00 1.40
1980 2036 7.623506 GCACTTGCGTCTATACTGTGTTAATTT 60.624 37.037 0.00 0.00 0.00 1.82
1981 2037 8.227791 CACTTGCGTCTATACTGTGTTAATTTT 58.772 33.333 0.00 0.00 0.00 1.82
1982 2038 8.780249 ACTTGCGTCTATACTGTGTTAATTTTT 58.220 29.630 0.00 0.00 0.00 1.94
2014 2070 2.731451 TGAGTGTTTCAAATCGAGCTCG 59.269 45.455 30.03 30.03 34.99 5.03
2050 2110 8.740123 TTTCTACATTGTCTGTTTTGAGGTTA 57.260 30.769 0.00 0.00 39.39 2.85
2056 2116 9.097257 ACATTGTCTGTTTTGAGGTTATTTTTG 57.903 29.630 0.00 0.00 32.90 2.44
2057 2117 9.097257 CATTGTCTGTTTTGAGGTTATTTTTGT 57.903 29.630 0.00 0.00 0.00 2.83
2058 2118 9.665719 ATTGTCTGTTTTGAGGTTATTTTTGTT 57.334 25.926 0.00 0.00 0.00 2.83
2059 2119 9.495572 TTGTCTGTTTTGAGGTTATTTTTGTTT 57.504 25.926 0.00 0.00 0.00 2.83
2060 2120 9.495572 TGTCTGTTTTGAGGTTATTTTTGTTTT 57.504 25.926 0.00 0.00 0.00 2.43
2086 2146 1.408969 GGAAAACACCCCAGCTCAAA 58.591 50.000 0.00 0.00 0.00 2.69
2112 2172 8.810990 AAATAAGGATAACCGGTGATAAACAA 57.189 30.769 8.52 0.00 41.83 2.83
2113 2173 7.797038 ATAAGGATAACCGGTGATAAACAAC 57.203 36.000 8.52 0.00 41.83 3.32
2126 2186 4.642437 TGATAAACAACACACACACCACAT 59.358 37.500 0.00 0.00 0.00 3.21
2139 2199 6.038985 CACACACCACATGTTGAAAATTACA 58.961 36.000 3.55 0.00 40.64 2.41
2145 2205 5.229423 CACATGTTGAAAATTACACCCAGG 58.771 41.667 0.00 0.00 0.00 4.45
2170 2230 0.251341 GAGGAGCCAACCCAACACAT 60.251 55.000 0.00 0.00 0.00 3.21
2215 2275 4.430765 CCGCCGCCACTCTTACGT 62.431 66.667 0.00 0.00 0.00 3.57
2241 2301 1.278238 GGCGTGACCTTGTTATCTCG 58.722 55.000 0.00 0.00 35.51 4.04
2242 2302 1.135199 GGCGTGACCTTGTTATCTCGA 60.135 52.381 0.00 0.00 34.60 4.04
2253 2321 2.552743 TGTTATCTCGAGGCAGGATACG 59.447 50.000 13.56 0.00 46.39 3.06
2280 2348 2.296752 TCGACAACTTTGGTCCATACGA 59.703 45.455 0.00 0.00 31.55 3.43
2286 2354 5.181245 ACAACTTTGGTCCATACGAATCAAG 59.819 40.000 0.00 0.00 0.00 3.02
2287 2355 5.160607 ACTTTGGTCCATACGAATCAAGA 57.839 39.130 0.00 0.00 0.00 3.02
2290 2358 1.859080 GGTCCATACGAATCAAGACGC 59.141 52.381 0.00 0.00 0.00 5.19
2292 2360 1.478916 TCCATACGAATCAAGACGCCA 59.521 47.619 0.00 0.00 0.00 5.69
2315 2383 4.018597 AGAGAAGCATTGGATTGGAGAACT 60.019 41.667 0.00 0.00 0.00 3.01
2341 2409 4.579869 GGTTTGAAAGCATCACCTCTCTA 58.420 43.478 1.74 0.00 37.92 2.43
2365 2433 3.121738 GGTGACGGGAGAGAAGAAAAA 57.878 47.619 0.00 0.00 0.00 1.94
2367 2435 3.685272 GGTGACGGGAGAGAAGAAAAATC 59.315 47.826 0.00 0.00 0.00 2.17
2368 2436 4.563786 GGTGACGGGAGAGAAGAAAAATCT 60.564 45.833 0.00 0.00 0.00 2.40
2370 2438 3.935828 GACGGGAGAGAAGAAAAATCTGG 59.064 47.826 0.00 0.00 0.00 3.86
2371 2439 2.680339 CGGGAGAGAAGAAAAATCTGGC 59.320 50.000 0.00 0.00 0.00 4.85
2372 2440 2.680339 GGGAGAGAAGAAAAATCTGGCG 59.320 50.000 0.00 0.00 0.00 5.69
2374 2442 2.680339 GAGAGAAGAAAAATCTGGCGGG 59.320 50.000 0.00 0.00 0.00 6.13
2375 2443 1.745653 GAGAAGAAAAATCTGGCGGGG 59.254 52.381 0.00 0.00 0.00 5.73
2377 2445 1.745653 GAAGAAAAATCTGGCGGGGAG 59.254 52.381 0.00 0.00 0.00 4.30
2386 2454 1.306654 TGGCGGGGAGATAACCACT 60.307 57.895 0.00 0.00 0.00 4.00
2435 2503 1.678101 GGCGCAATGCTCCTCTAAAAT 59.322 47.619 10.83 0.00 45.43 1.82
2451 2519 0.393537 AAATCTCCAAGGCTCCGCAG 60.394 55.000 0.00 0.00 0.00 5.18
2475 2543 4.512961 ATGAGCACGCATCGCCGA 62.513 61.111 0.00 0.00 0.00 5.54
2504 2572 1.742071 GCACAAAACCAACCACAAGGG 60.742 52.381 0.00 0.00 44.81 3.95
2507 2575 1.681486 AAAACCAACCACAAGGGCGG 61.681 55.000 0.00 0.00 42.05 6.13
2551 2620 3.007635 GGAAACCTTAGATCCACCAACG 58.992 50.000 0.00 0.00 33.30 4.10
2554 2623 2.537143 ACCTTAGATCCACCAACGACT 58.463 47.619 0.00 0.00 0.00 4.18
2556 2625 2.271800 CTTAGATCCACCAACGACTGC 58.728 52.381 0.00 0.00 0.00 4.40
2557 2626 0.535335 TAGATCCACCAACGACTGCC 59.465 55.000 0.00 0.00 0.00 4.85
2576 2645 1.666599 CCGCACACCACATTTCACATG 60.667 52.381 0.00 0.00 0.00 3.21
2588 2657 6.128309 CCACATTTCACATGTTAATCACGAGA 60.128 38.462 0.00 0.00 0.00 4.04
2589 2658 7.414429 CCACATTTCACATGTTAATCACGAGAT 60.414 37.037 0.00 0.00 35.53 2.75
2590 2659 7.427318 CACATTTCACATGTTAATCACGAGATG 59.573 37.037 0.00 2.50 33.90 2.90
2591 2660 7.334171 ACATTTCACATGTTAATCACGAGATGA 59.666 33.333 13.95 0.00 43.13 2.92
2592 2661 6.647212 TTCACATGTTAATCACGAGATGAC 57.353 37.500 0.00 0.00 41.24 3.06
2593 2662 5.965922 TCACATGTTAATCACGAGATGACT 58.034 37.500 0.00 0.00 41.24 3.41
2594 2663 6.398095 TCACATGTTAATCACGAGATGACTT 58.602 36.000 0.00 0.00 41.24 3.01
2595 2664 6.531594 TCACATGTTAATCACGAGATGACTTC 59.468 38.462 0.00 0.00 41.24 3.01
2596 2665 6.533012 CACATGTTAATCACGAGATGACTTCT 59.467 38.462 0.00 0.00 41.24 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 2.824489 TCGCGACGAGATCCAGCT 60.824 61.111 3.71 0.00 0.00 4.24
112 114 1.555967 AACAACTGGCACTTGTTGGT 58.444 45.000 19.87 12.43 43.43 3.67
115 117 2.092103 TCCCTAACAACTGGCACTTGTT 60.092 45.455 22.70 22.70 42.94 2.83
190 192 1.562575 CCGTACGTGAAGGCCAACAC 61.563 60.000 15.21 18.31 0.00 3.32
230 232 3.680620 TTCTTCATCGCCCCGCCAG 62.681 63.158 0.00 0.00 0.00 4.85
292 302 4.809513 GAGGCTGGGTCCTCCTTA 57.190 61.111 0.00 0.00 45.40 2.69
365 375 0.324460 CTCTCCTACACCCCGTCCTT 60.324 60.000 0.00 0.00 0.00 3.36
377 387 4.527816 GTCGTAGATCTACCCTCTCTCCTA 59.472 50.000 24.01 0.00 40.67 2.94
385 395 2.092753 TCGGTTGTCGTAGATCTACCCT 60.093 50.000 24.01 0.00 40.67 4.34
399 409 0.696501 AAACCCTAGCCATCGGTTGT 59.303 50.000 1.64 0.00 39.80 3.32
429 439 3.677190 CGATCCCTACCTTCTCGATACT 58.323 50.000 0.00 0.00 0.00 2.12
432 442 1.249407 GCGATCCCTACCTTCTCGAT 58.751 55.000 0.00 0.00 0.00 3.59
447 457 4.162690 GCTTCCACTCCCGGCGAT 62.163 66.667 9.30 0.00 0.00 4.58
501 511 2.669781 CTAACCATGTGGGGCATCATT 58.330 47.619 3.77 0.00 42.91 2.57
506 516 0.844661 AGTCCTAACCATGTGGGGCA 60.845 55.000 3.77 0.00 42.91 5.36
514 524 2.093973 CGCTTGTCAGAGTCCTAACCAT 60.094 50.000 0.00 0.00 0.00 3.55
520 530 2.286523 CCCCGCTTGTCAGAGTCCT 61.287 63.158 0.00 0.00 0.00 3.85
524 534 3.710722 AGCCCCCGCTTGTCAGAG 61.711 66.667 0.00 0.00 45.55 3.35
542 552 0.457681 AAAAATGCGTATGTGCGGGC 60.458 50.000 0.00 0.00 37.81 6.13
597 607 3.593442 TCTTGTCAGTTTTGGGGACAT 57.407 42.857 0.00 0.00 40.84 3.06
605 615 1.064952 CGCCCGTTTCTTGTCAGTTTT 59.935 47.619 0.00 0.00 0.00 2.43
607 617 1.782028 GCGCCCGTTTCTTGTCAGTT 61.782 55.000 0.00 0.00 0.00 3.16
608 618 2.251642 GCGCCCGTTTCTTGTCAGT 61.252 57.895 0.00 0.00 0.00 3.41
610 620 3.342627 CGCGCCCGTTTCTTGTCA 61.343 61.111 0.00 0.00 0.00 3.58
631 642 1.004277 GACAGACAGCGAACGGACAG 61.004 60.000 0.00 0.00 0.00 3.51
647 658 7.168219 ACTTGCTCCTGATTTATGTTTAGACA 58.832 34.615 0.00 0.00 40.71 3.41
652 663 8.409358 AGTAAACTTGCTCCTGATTTATGTTT 57.591 30.769 0.00 0.00 0.00 2.83
665 676 4.216257 TGCATTTCAGGAGTAAACTTGCTC 59.784 41.667 0.00 0.00 38.91 4.26
666 677 4.144297 TGCATTTCAGGAGTAAACTTGCT 58.856 39.130 0.00 0.00 0.00 3.91
667 678 4.503741 TGCATTTCAGGAGTAAACTTGC 57.496 40.909 0.00 0.00 0.00 4.01
668 679 4.911610 CGTTGCATTTCAGGAGTAAACTTG 59.088 41.667 0.00 0.00 0.00 3.16
669 680 4.023193 CCGTTGCATTTCAGGAGTAAACTT 60.023 41.667 0.00 0.00 0.00 2.66
670 681 3.502211 CCGTTGCATTTCAGGAGTAAACT 59.498 43.478 0.00 0.00 0.00 2.66
671 682 3.365969 CCCGTTGCATTTCAGGAGTAAAC 60.366 47.826 0.00 0.00 0.00 2.01
672 683 2.817258 CCCGTTGCATTTCAGGAGTAAA 59.183 45.455 0.00 0.00 0.00 2.01
673 684 2.432444 CCCGTTGCATTTCAGGAGTAA 58.568 47.619 0.00 0.00 0.00 2.24
674 685 1.948611 GCCCGTTGCATTTCAGGAGTA 60.949 52.381 0.00 0.00 40.77 2.59
675 686 1.244019 GCCCGTTGCATTTCAGGAGT 61.244 55.000 0.00 0.00 40.77 3.85
676 687 1.508088 GCCCGTTGCATTTCAGGAG 59.492 57.895 0.00 0.00 40.77 3.69
677 688 3.680156 GCCCGTTGCATTTCAGGA 58.320 55.556 0.00 0.00 40.77 3.86
686 697 3.056313 GCTCCTGATTGCCCGTTGC 62.056 63.158 0.00 0.00 41.77 4.17
687 698 1.243342 TTGCTCCTGATTGCCCGTTG 61.243 55.000 0.00 0.00 0.00 4.10
688 699 0.962356 CTTGCTCCTGATTGCCCGTT 60.962 55.000 0.00 0.00 0.00 4.44
689 700 1.377725 CTTGCTCCTGATTGCCCGT 60.378 57.895 0.00 0.00 0.00 5.28
690 701 0.962356 AACTTGCTCCTGATTGCCCG 60.962 55.000 0.00 0.00 0.00 6.13
691 702 1.067354 CAAACTTGCTCCTGATTGCCC 60.067 52.381 0.00 0.00 0.00 5.36
692 703 2.358939 CAAACTTGCTCCTGATTGCC 57.641 50.000 0.00 0.00 0.00 4.52
716 727 1.899054 TTCGGCCCGTTGCATTTCA 60.899 52.632 1.63 0.00 43.89 2.69
750 761 1.120530 ACTCGTCCGCATCCCTAAAT 58.879 50.000 0.00 0.00 0.00 1.40
754 765 2.680352 ACACTCGTCCGCATCCCT 60.680 61.111 0.00 0.00 0.00 4.20
755 766 2.202756 GACACTCGTCCGCATCCC 60.203 66.667 0.00 0.00 36.02 3.85
764 775 0.249322 CCAAACGGACAGACACTCGT 60.249 55.000 0.00 0.00 37.45 4.18
765 776 0.031585 TCCAAACGGACAGACACTCG 59.968 55.000 0.00 0.00 0.00 4.18
782 793 1.620413 CGTTACGAGCCAAACGGTCC 61.620 60.000 0.00 0.00 43.52 4.46
783 794 1.777199 CGTTACGAGCCAAACGGTC 59.223 57.895 0.00 0.00 43.52 4.79
784 795 3.941035 CGTTACGAGCCAAACGGT 58.059 55.556 0.00 0.00 43.52 4.83
786 797 0.940519 TGTCCGTTACGAGCCAAACG 60.941 55.000 6.24 0.00 46.05 3.60
787 798 0.509929 GTGTCCGTTACGAGCCAAAC 59.490 55.000 6.24 0.00 0.00 2.93
788 799 0.104487 TGTGTCCGTTACGAGCCAAA 59.896 50.000 6.24 0.00 0.00 3.28
789 800 0.598158 GTGTGTCCGTTACGAGCCAA 60.598 55.000 6.24 0.00 0.00 4.52
790 801 1.007038 GTGTGTCCGTTACGAGCCA 60.007 57.895 6.24 0.00 0.00 4.75
797 808 2.050168 GTCCGCGTGTGTCCGTTA 60.050 61.111 4.92 0.00 0.00 3.18
820 831 1.672363 ACAACGCATCGATCGTACCTA 59.328 47.619 15.94 0.00 39.48 3.08
1026 1043 2.856039 ATCCGTCTTCCCGAGGAGCA 62.856 60.000 0.00 0.00 36.08 4.26
1117 1137 2.824041 CATGGGCGGCAGGTACAC 60.824 66.667 12.47 0.00 0.00 2.90
1178 1198 2.280524 TGGGCTTGTCGTCGTTGG 60.281 61.111 0.00 0.00 0.00 3.77
1301 1333 1.153568 TGGCACAGCTCATAGACGC 60.154 57.895 0.00 0.00 0.00 5.19
1393 1425 2.125269 CCCCGTAGTCTTTGCCGG 60.125 66.667 0.00 0.00 40.12 6.13
1398 1430 2.660802 CACCGCCCCGTAGTCTTT 59.339 61.111 0.00 0.00 0.00 2.52
1621 1677 7.883833 TCTTACGTAGCTCCATATGAATCTACT 59.116 37.037 3.65 5.34 31.75 2.57
1674 1730 1.370609 TTTGGTTCGCACTCAAACGA 58.629 45.000 0.00 0.00 36.32 3.85
1675 1731 2.399396 ATTTGGTTCGCACTCAAACG 57.601 45.000 4.58 0.00 33.91 3.60
1676 1732 3.242712 CACAATTTGGTTCGCACTCAAAC 59.757 43.478 0.78 0.00 33.91 2.93
1677 1733 3.129462 TCACAATTTGGTTCGCACTCAAA 59.871 39.130 0.78 4.86 35.30 2.69
1678 1734 2.685388 TCACAATTTGGTTCGCACTCAA 59.315 40.909 0.78 0.00 0.00 3.02
1679 1735 2.293170 TCACAATTTGGTTCGCACTCA 58.707 42.857 0.78 0.00 0.00 3.41
1680 1736 3.559238 ATCACAATTTGGTTCGCACTC 57.441 42.857 0.78 0.00 0.00 3.51
1681 1737 4.050553 CAAATCACAATTTGGTTCGCACT 58.949 39.130 0.78 0.00 45.30 4.40
1682 1738 4.373532 CAAATCACAATTTGGTTCGCAC 57.626 40.909 0.78 0.00 45.30 5.34
1691 1747 8.734386 GTCTCTCTAACCATCAAATCACAATTT 58.266 33.333 0.00 0.00 35.43 1.82
1692 1748 8.105829 AGTCTCTCTAACCATCAAATCACAATT 58.894 33.333 0.00 0.00 0.00 2.32
1693 1749 7.551974 CAGTCTCTCTAACCATCAAATCACAAT 59.448 37.037 0.00 0.00 0.00 2.71
1694 1750 6.875726 CAGTCTCTCTAACCATCAAATCACAA 59.124 38.462 0.00 0.00 0.00 3.33
1695 1751 6.014242 ACAGTCTCTCTAACCATCAAATCACA 60.014 38.462 0.00 0.00 0.00 3.58
1696 1752 6.312426 CACAGTCTCTCTAACCATCAAATCAC 59.688 42.308 0.00 0.00 0.00 3.06
1697 1753 6.401394 CACAGTCTCTCTAACCATCAAATCA 58.599 40.000 0.00 0.00 0.00 2.57
1698 1754 5.814705 CCACAGTCTCTCTAACCATCAAATC 59.185 44.000 0.00 0.00 0.00 2.17
1699 1755 5.249393 ACCACAGTCTCTCTAACCATCAAAT 59.751 40.000 0.00 0.00 0.00 2.32
1700 1756 4.593206 ACCACAGTCTCTCTAACCATCAAA 59.407 41.667 0.00 0.00 0.00 2.69
1701 1757 4.160329 ACCACAGTCTCTCTAACCATCAA 58.840 43.478 0.00 0.00 0.00 2.57
1702 1758 3.779444 ACCACAGTCTCTCTAACCATCA 58.221 45.455 0.00 0.00 0.00 3.07
1703 1759 5.594725 TGATACCACAGTCTCTCTAACCATC 59.405 44.000 0.00 0.00 0.00 3.51
1704 1760 5.361285 GTGATACCACAGTCTCTCTAACCAT 59.639 44.000 0.00 0.00 42.72 3.55
1705 1761 4.705507 GTGATACCACAGTCTCTCTAACCA 59.294 45.833 0.00 0.00 42.72 3.67
1706 1762 4.951094 AGTGATACCACAGTCTCTCTAACC 59.049 45.833 0.00 0.00 45.54 2.85
1707 1763 6.238538 GCTAGTGATACCACAGTCTCTCTAAC 60.239 46.154 0.00 0.00 45.54 2.34
1708 1764 5.823570 GCTAGTGATACCACAGTCTCTCTAA 59.176 44.000 0.00 0.00 45.54 2.10
1709 1765 5.369833 GCTAGTGATACCACAGTCTCTCTA 58.630 45.833 0.00 0.00 45.54 2.43
1710 1766 4.204012 GCTAGTGATACCACAGTCTCTCT 58.796 47.826 0.00 0.00 45.54 3.10
1711 1767 3.316868 GGCTAGTGATACCACAGTCTCTC 59.683 52.174 0.00 0.00 45.54 3.20
1712 1768 3.292460 GGCTAGTGATACCACAGTCTCT 58.708 50.000 0.00 0.00 45.54 3.10
1713 1769 2.362717 GGGCTAGTGATACCACAGTCTC 59.637 54.545 0.00 0.00 45.54 3.36
1714 1770 2.292257 TGGGCTAGTGATACCACAGTCT 60.292 50.000 0.00 0.00 45.54 3.24
1715 1771 2.108168 TGGGCTAGTGATACCACAGTC 58.892 52.381 0.00 0.00 45.54 3.51
1716 1772 2.247699 TGGGCTAGTGATACCACAGT 57.752 50.000 0.00 0.00 45.54 3.55
1717 1773 2.700371 TGATGGGCTAGTGATACCACAG 59.300 50.000 0.00 0.00 45.54 3.66
1718 1774 2.758130 TGATGGGCTAGTGATACCACA 58.242 47.619 0.00 0.00 45.54 4.17
1719 1775 3.495100 CCTTGATGGGCTAGTGATACCAC 60.495 52.174 0.00 0.00 43.50 4.16
1720 1776 2.705658 CCTTGATGGGCTAGTGATACCA 59.294 50.000 0.00 0.00 37.41 3.25
1721 1777 2.706190 ACCTTGATGGGCTAGTGATACC 59.294 50.000 0.00 0.00 41.11 2.73
1722 1778 4.423625 AACCTTGATGGGCTAGTGATAC 57.576 45.455 0.00 0.00 41.11 2.24
1723 1779 6.157994 ACTTAAACCTTGATGGGCTAGTGATA 59.842 38.462 0.00 0.00 41.11 2.15
1724 1780 5.044846 ACTTAAACCTTGATGGGCTAGTGAT 60.045 40.000 0.00 0.00 41.11 3.06
1725 1781 4.288626 ACTTAAACCTTGATGGGCTAGTGA 59.711 41.667 0.00 0.00 41.11 3.41
1726 1782 4.589908 ACTTAAACCTTGATGGGCTAGTG 58.410 43.478 0.00 0.00 41.11 2.74
1727 1783 4.324331 GGACTTAAACCTTGATGGGCTAGT 60.324 45.833 0.00 0.00 41.11 2.57
1728 1784 4.080299 AGGACTTAAACCTTGATGGGCTAG 60.080 45.833 0.00 0.00 41.11 3.42
1729 1785 3.850173 AGGACTTAAACCTTGATGGGCTA 59.150 43.478 0.00 0.00 41.11 3.93
1730 1786 2.649816 AGGACTTAAACCTTGATGGGCT 59.350 45.455 0.00 0.00 41.11 5.19
1731 1787 3.087370 AGGACTTAAACCTTGATGGGC 57.913 47.619 0.00 0.00 41.11 5.36
1732 1788 5.186198 CACTAGGACTTAAACCTTGATGGG 58.814 45.833 13.52 0.00 41.11 4.00
1733 1789 4.636206 GCACTAGGACTTAAACCTTGATGG 59.364 45.833 13.52 0.00 38.76 3.51
1734 1790 5.491982 AGCACTAGGACTTAAACCTTGATG 58.508 41.667 13.52 10.03 38.76 3.07
1735 1791 5.624738 CGAGCACTAGGACTTAAACCTTGAT 60.625 44.000 13.52 4.49 38.76 2.57
1736 1792 4.321750 CGAGCACTAGGACTTAAACCTTGA 60.322 45.833 13.52 0.00 38.76 3.02
1737 1793 3.927142 CGAGCACTAGGACTTAAACCTTG 59.073 47.826 6.25 7.08 38.76 3.61
1738 1794 3.616802 GCGAGCACTAGGACTTAAACCTT 60.617 47.826 6.25 0.00 38.76 3.50
1739 1795 2.094130 GCGAGCACTAGGACTTAAACCT 60.094 50.000 0.00 6.21 41.05 3.50
1740 1796 2.269172 GCGAGCACTAGGACTTAAACC 58.731 52.381 0.00 0.00 0.00 3.27
1741 1797 2.955614 TGCGAGCACTAGGACTTAAAC 58.044 47.619 0.00 0.00 0.00 2.01
1742 1798 3.887621 ATGCGAGCACTAGGACTTAAA 57.112 42.857 0.00 0.00 0.00 1.52
1743 1799 5.531122 AATATGCGAGCACTAGGACTTAA 57.469 39.130 0.00 0.00 0.00 1.85
1744 1800 5.302059 AGAAATATGCGAGCACTAGGACTTA 59.698 40.000 0.00 0.00 0.00 2.24
1745 1801 4.100189 AGAAATATGCGAGCACTAGGACTT 59.900 41.667 0.00 0.00 0.00 3.01
1746 1802 3.639094 AGAAATATGCGAGCACTAGGACT 59.361 43.478 0.00 0.00 0.00 3.85
1747 1803 3.983741 AGAAATATGCGAGCACTAGGAC 58.016 45.455 0.00 0.00 0.00 3.85
1748 1804 5.070685 TCTAGAAATATGCGAGCACTAGGA 58.929 41.667 15.15 4.81 0.00 2.94
1749 1805 5.378292 TCTAGAAATATGCGAGCACTAGG 57.622 43.478 15.15 3.20 0.00 3.02
1750 1806 7.881643 AATTCTAGAAATATGCGAGCACTAG 57.118 36.000 9.71 6.63 0.00 2.57
1751 1807 8.662781 AAAATTCTAGAAATATGCGAGCACTA 57.337 30.769 9.71 0.00 0.00 2.74
1752 1808 7.559590 AAAATTCTAGAAATATGCGAGCACT 57.440 32.000 9.71 0.00 0.00 4.40
1774 1830 4.610951 CGCATCGTCGAAAATTCTGAAAAA 59.389 37.500 0.00 0.00 0.00 1.94
1775 1831 4.148166 CGCATCGTCGAAAATTCTGAAAA 58.852 39.130 0.00 0.00 0.00 2.29
1776 1832 3.731855 CGCATCGTCGAAAATTCTGAAA 58.268 40.909 0.00 0.00 0.00 2.69
1777 1833 2.473868 GCGCATCGTCGAAAATTCTGAA 60.474 45.455 0.30 0.00 0.00 3.02
1778 1834 1.060553 GCGCATCGTCGAAAATTCTGA 59.939 47.619 0.30 0.00 0.00 3.27
1779 1835 1.201910 TGCGCATCGTCGAAAATTCTG 60.202 47.619 5.66 0.00 0.00 3.02
1780 1836 1.075542 TGCGCATCGTCGAAAATTCT 58.924 45.000 5.66 0.00 0.00 2.40
1781 1837 2.029815 GATGCGCATCGTCGAAAATTC 58.970 47.619 32.60 9.06 0.00 2.17
1782 1838 1.268032 GGATGCGCATCGTCGAAAATT 60.268 47.619 36.56 7.91 38.69 1.82
1783 1839 0.304705 GGATGCGCATCGTCGAAAAT 59.695 50.000 36.56 8.48 38.69 1.82
1784 1840 1.016653 TGGATGCGCATCGTCGAAAA 61.017 50.000 36.56 17.29 38.69 2.29
1785 1841 1.420641 CTGGATGCGCATCGTCGAAA 61.421 55.000 36.56 19.78 38.69 3.46
1786 1842 1.878069 CTGGATGCGCATCGTCGAA 60.878 57.895 36.56 21.28 38.69 3.71
1787 1843 2.278792 CTGGATGCGCATCGTCGA 60.279 61.111 36.56 22.17 38.69 4.20
1788 1844 2.583319 ACTGGATGCGCATCGTCG 60.583 61.111 36.56 28.86 38.69 5.12
1789 1845 2.528743 CCACTGGATGCGCATCGTC 61.529 63.158 36.56 26.61 38.69 4.20
1790 1846 2.512286 CCACTGGATGCGCATCGT 60.512 61.111 36.56 28.57 38.69 3.73
1791 1847 3.274586 CCCACTGGATGCGCATCG 61.275 66.667 36.56 27.97 38.69 3.84
1792 1848 1.890979 CTCCCACTGGATGCGCATC 60.891 63.158 36.71 36.71 40.80 3.91
1793 1849 2.191375 CTCCCACTGGATGCGCAT 59.809 61.111 25.66 25.66 40.80 4.73
1794 1850 4.100084 CCTCCCACTGGATGCGCA 62.100 66.667 14.96 14.96 40.80 6.09
1795 1851 3.746949 CTCCTCCCACTGGATGCGC 62.747 68.421 0.00 0.00 40.80 6.09
1796 1852 2.060383 TCTCCTCCCACTGGATGCG 61.060 63.158 0.00 0.00 40.80 4.73
1797 1853 1.267574 TGTCTCCTCCCACTGGATGC 61.268 60.000 0.00 0.00 40.80 3.91
1798 1854 1.504912 ATGTCTCCTCCCACTGGATG 58.495 55.000 0.00 0.00 40.80 3.51
1799 1855 2.122768 GAATGTCTCCTCCCACTGGAT 58.877 52.381 0.00 0.00 40.80 3.41
1800 1856 1.079490 AGAATGTCTCCTCCCACTGGA 59.921 52.381 0.00 0.00 38.75 3.86
1801 1857 1.484240 GAGAATGTCTCCTCCCACTGG 59.516 57.143 0.00 0.00 37.55 4.00
1802 1858 1.135915 CGAGAATGTCTCCTCCCACTG 59.864 57.143 0.00 0.00 40.34 3.66
1803 1859 1.272760 ACGAGAATGTCTCCTCCCACT 60.273 52.381 0.00 0.00 40.34 4.00
1804 1860 1.135333 GACGAGAATGTCTCCTCCCAC 59.865 57.143 0.00 0.00 40.34 4.61
1805 1861 1.475403 GACGAGAATGTCTCCTCCCA 58.525 55.000 0.00 0.00 40.34 4.37
1806 1862 0.382515 CGACGAGAATGTCTCCTCCC 59.617 60.000 0.00 0.00 40.34 4.30
1807 1863 1.380524 TCGACGAGAATGTCTCCTCC 58.619 55.000 0.00 0.00 40.34 4.30
1808 1864 2.614520 TCATCGACGAGAATGTCTCCTC 59.385 50.000 3.01 0.00 40.34 3.71
1809 1865 2.356382 GTCATCGACGAGAATGTCTCCT 59.644 50.000 3.01 0.00 40.34 3.69
1810 1866 2.722071 GTCATCGACGAGAATGTCTCC 58.278 52.381 3.01 0.00 40.34 3.71
1822 1878 2.226674 TCATAGGCATCTCGTCATCGAC 59.773 50.000 0.00 0.00 41.35 4.20
1823 1879 2.504367 TCATAGGCATCTCGTCATCGA 58.496 47.619 0.00 0.00 44.12 3.59
1824 1880 2.997485 TCATAGGCATCTCGTCATCG 57.003 50.000 0.00 0.00 38.55 3.84
1825 1881 4.082300 AGTCATCATAGGCATCTCGTCATC 60.082 45.833 0.00 0.00 0.00 2.92
1826 1882 3.831333 AGTCATCATAGGCATCTCGTCAT 59.169 43.478 0.00 0.00 0.00 3.06
1827 1883 3.225940 AGTCATCATAGGCATCTCGTCA 58.774 45.455 0.00 0.00 0.00 4.35
1828 1884 3.932545 AGTCATCATAGGCATCTCGTC 57.067 47.619 0.00 0.00 0.00 4.20
1829 1885 3.304996 CGAAGTCATCATAGGCATCTCGT 60.305 47.826 0.00 0.00 0.00 4.18
1830 1886 3.240884 CGAAGTCATCATAGGCATCTCG 58.759 50.000 0.00 0.00 0.00 4.04
1831 1887 4.250116 ACGAAGTCATCATAGGCATCTC 57.750 45.455 0.00 0.00 29.74 2.75
1832 1888 5.791336 TTACGAAGTCATCATAGGCATCT 57.209 39.130 0.00 0.00 43.93 2.90
1833 1889 7.426929 AATTTACGAAGTCATCATAGGCATC 57.573 36.000 0.00 0.00 43.93 3.91
1834 1890 7.807977 AAATTTACGAAGTCATCATAGGCAT 57.192 32.000 0.00 0.00 43.93 4.40
1835 1891 7.624360 AAAATTTACGAAGTCATCATAGGCA 57.376 32.000 0.00 0.00 43.93 4.75
1836 1892 9.651718 CTTAAAATTTACGAAGTCATCATAGGC 57.348 33.333 0.00 0.00 43.93 3.93
1854 1910 9.624373 ACTGAGTCAGCATATCATCTTAAAATT 57.376 29.630 20.31 0.00 34.37 1.82
1855 1911 9.270640 GACTGAGTCAGCATATCATCTTAAAAT 57.729 33.333 20.31 0.00 34.37 1.82
1856 1912 8.481314 AGACTGAGTCAGCATATCATCTTAAAA 58.519 33.333 20.31 0.00 34.37 1.52
1857 1913 8.016301 AGACTGAGTCAGCATATCATCTTAAA 57.984 34.615 20.31 0.00 34.37 1.52
1858 1914 7.594351 AGACTGAGTCAGCATATCATCTTAA 57.406 36.000 20.31 0.00 34.37 1.85
1859 1915 7.594351 AAGACTGAGTCAGCATATCATCTTA 57.406 36.000 20.31 0.00 34.37 2.10
1860 1916 6.482898 AAGACTGAGTCAGCATATCATCTT 57.517 37.500 20.31 15.41 34.37 2.40
1861 1917 6.482898 AAAGACTGAGTCAGCATATCATCT 57.517 37.500 20.31 10.36 34.37 2.90
1862 1918 5.401972 CGAAAGACTGAGTCAGCATATCATC 59.598 44.000 20.31 8.19 34.37 2.92
1863 1919 5.068329 TCGAAAGACTGAGTCAGCATATCAT 59.932 40.000 20.31 0.27 34.37 2.45
1864 1920 4.399303 TCGAAAGACTGAGTCAGCATATCA 59.601 41.667 20.31 0.00 34.37 2.15
1865 1921 4.926244 TCGAAAGACTGAGTCAGCATATC 58.074 43.478 20.31 9.99 34.37 1.63
1866 1922 4.991153 TCGAAAGACTGAGTCAGCATAT 57.009 40.909 20.31 4.47 34.37 1.78
1867 1923 4.218635 ACTTCGAAAGACTGAGTCAGCATA 59.781 41.667 20.31 0.00 41.84 3.14
1868 1924 3.006323 ACTTCGAAAGACTGAGTCAGCAT 59.994 43.478 20.31 5.95 41.84 3.79
1869 1925 2.362397 ACTTCGAAAGACTGAGTCAGCA 59.638 45.455 20.31 0.00 41.84 4.41
1870 1926 2.728839 CACTTCGAAAGACTGAGTCAGC 59.271 50.000 20.31 12.59 41.84 4.26
1871 1927 2.728839 GCACTTCGAAAGACTGAGTCAG 59.271 50.000 18.83 18.83 41.84 3.51
1872 1928 2.362397 AGCACTTCGAAAGACTGAGTCA 59.638 45.455 15.86 0.00 41.84 3.41
1873 1929 2.983803 GAGCACTTCGAAAGACTGAGTC 59.016 50.000 3.98 3.98 41.84 3.36
1874 1930 2.362397 TGAGCACTTCGAAAGACTGAGT 59.638 45.455 0.00 0.00 41.84 3.41
1875 1931 3.018598 TGAGCACTTCGAAAGACTGAG 57.981 47.619 0.00 0.00 41.84 3.35
1876 1932 3.667497 ATGAGCACTTCGAAAGACTGA 57.333 42.857 0.00 0.00 41.84 3.41
1877 1933 4.738124 TCTATGAGCACTTCGAAAGACTG 58.262 43.478 0.00 0.00 41.84 3.51
1878 1934 4.702612 TCTCTATGAGCACTTCGAAAGACT 59.297 41.667 0.00 0.00 41.84 3.24
1879 1935 4.987832 TCTCTATGAGCACTTCGAAAGAC 58.012 43.478 0.00 0.00 41.84 3.01
1880 1936 5.843673 ATCTCTATGAGCACTTCGAAAGA 57.156 39.130 0.00 0.00 39.20 2.52
1881 1937 6.016693 TCCTATCTCTATGAGCACTTCGAAAG 60.017 42.308 0.00 0.00 0.00 2.62
1882 1938 5.828328 TCCTATCTCTATGAGCACTTCGAAA 59.172 40.000 0.00 0.00 0.00 3.46
1883 1939 5.377478 TCCTATCTCTATGAGCACTTCGAA 58.623 41.667 0.00 0.00 0.00 3.71
1884 1940 4.974399 TCCTATCTCTATGAGCACTTCGA 58.026 43.478 0.00 0.00 0.00 3.71
1885 1941 5.895636 ATCCTATCTCTATGAGCACTTCG 57.104 43.478 0.00 0.00 0.00 3.79
1886 1942 6.368516 GCAAATCCTATCTCTATGAGCACTTC 59.631 42.308 0.00 0.00 0.00 3.01
1887 1943 6.229733 GCAAATCCTATCTCTATGAGCACTT 58.770 40.000 0.00 0.00 0.00 3.16
1888 1944 5.566429 CGCAAATCCTATCTCTATGAGCACT 60.566 44.000 0.00 0.00 0.00 4.40
1889 1945 4.624882 CGCAAATCCTATCTCTATGAGCAC 59.375 45.833 0.00 0.00 0.00 4.40
1890 1946 4.281941 ACGCAAATCCTATCTCTATGAGCA 59.718 41.667 0.00 0.00 0.00 4.26
1891 1947 4.624882 CACGCAAATCCTATCTCTATGAGC 59.375 45.833 0.00 0.00 0.00 4.26
1892 1948 5.632764 CACACGCAAATCCTATCTCTATGAG 59.367 44.000 0.00 0.00 0.00 2.90
1893 1949 5.069119 ACACACGCAAATCCTATCTCTATGA 59.931 40.000 0.00 0.00 0.00 2.15
1894 1950 5.292765 ACACACGCAAATCCTATCTCTATG 58.707 41.667 0.00 0.00 0.00 2.23
1895 1951 5.537300 ACACACGCAAATCCTATCTCTAT 57.463 39.130 0.00 0.00 0.00 1.98
1896 1952 5.505159 CGTACACACGCAAATCCTATCTCTA 60.505 44.000 0.00 0.00 42.05 2.43
1897 1953 3.895232 ACACACGCAAATCCTATCTCT 57.105 42.857 0.00 0.00 0.00 3.10
1898 1954 3.486108 CGTACACACGCAAATCCTATCTC 59.514 47.826 0.00 0.00 42.05 2.75
1899 1955 3.444916 CGTACACACGCAAATCCTATCT 58.555 45.455 0.00 0.00 42.05 1.98
1900 1956 3.836229 CGTACACACGCAAATCCTATC 57.164 47.619 0.00 0.00 42.05 2.08
1912 1968 2.162208 TCATCCCTACGAACGTACACAC 59.838 50.000 2.89 0.00 0.00 3.82
1913 1969 2.421073 CTCATCCCTACGAACGTACACA 59.579 50.000 2.89 0.00 0.00 3.72
1914 1970 2.421424 ACTCATCCCTACGAACGTACAC 59.579 50.000 2.89 0.00 0.00 2.90
1915 1971 2.421073 CACTCATCCCTACGAACGTACA 59.579 50.000 2.89 0.00 0.00 2.90
1916 1972 2.793933 GCACTCATCCCTACGAACGTAC 60.794 54.545 2.89 0.00 0.00 3.67
1917 1973 1.402968 GCACTCATCCCTACGAACGTA 59.597 52.381 6.87 6.87 0.00 3.57
1918 1974 0.172803 GCACTCATCCCTACGAACGT 59.827 55.000 5.03 5.03 0.00 3.99
1919 1975 0.172578 TGCACTCATCCCTACGAACG 59.827 55.000 0.00 0.00 0.00 3.95
1920 1976 2.205074 CATGCACTCATCCCTACGAAC 58.795 52.381 0.00 0.00 0.00 3.95
1921 1977 1.473257 GCATGCACTCATCCCTACGAA 60.473 52.381 14.21 0.00 0.00 3.85
1922 1978 0.104855 GCATGCACTCATCCCTACGA 59.895 55.000 14.21 0.00 0.00 3.43
1923 1979 0.179076 TGCATGCACTCATCCCTACG 60.179 55.000 18.46 0.00 0.00 3.51
1924 1980 1.303309 GTGCATGCACTCATCCCTAC 58.697 55.000 37.48 12.32 43.12 3.18
1925 1981 0.179076 CGTGCATGCACTCATCCCTA 60.179 55.000 39.46 6.09 44.16 3.53
1926 1982 1.450848 CGTGCATGCACTCATCCCT 60.451 57.895 39.46 0.00 44.16 4.20
1927 1983 1.746615 ACGTGCATGCACTCATCCC 60.747 57.895 39.46 18.74 44.16 3.85
1928 1984 1.300971 ACACGTGCATGCACTCATCC 61.301 55.000 39.46 19.43 44.16 3.51
1929 1985 1.358877 TACACGTGCATGCACTCATC 58.641 50.000 39.46 20.11 44.16 2.92
1930 1986 2.028420 ATACACGTGCATGCACTCAT 57.972 45.000 39.46 28.19 44.16 2.90
1931 1987 2.663826 TATACACGTGCATGCACTCA 57.336 45.000 39.46 25.06 44.16 3.41
1932 1988 3.123050 TCATATACACGTGCATGCACTC 58.877 45.455 39.46 21.51 44.16 3.51
1933 1989 3.126073 CTCATATACACGTGCATGCACT 58.874 45.455 39.46 27.45 44.16 4.40
1934 1990 2.348872 GCTCATATACACGTGCATGCAC 60.349 50.000 35.76 35.76 43.01 4.57
1935 1991 1.866601 GCTCATATACACGTGCATGCA 59.133 47.619 18.46 18.46 0.00 3.96
1936 1992 1.866601 TGCTCATATACACGTGCATGC 59.133 47.619 17.22 11.82 0.00 4.06
1937 1993 3.126073 AGTGCTCATATACACGTGCATG 58.874 45.455 17.22 16.19 41.72 4.06
1938 1994 3.459232 AGTGCTCATATACACGTGCAT 57.541 42.857 17.22 11.52 41.72 3.96
1939 1995 2.929398 CAAGTGCTCATATACACGTGCA 59.071 45.455 17.22 2.06 38.93 4.57
1940 1996 3.575858 CAAGTGCTCATATACACGTGC 57.424 47.619 17.22 0.00 38.93 5.34
1941 1997 2.034591 CGCAAGTGCTCATATACACGTG 60.035 50.000 15.48 15.48 45.33 4.49
1942 1998 2.193447 CGCAAGTGCTCATATACACGT 58.807 47.619 1.21 0.00 41.72 4.49
1943 1999 2.910987 CGCAAGTGCTCATATACACG 57.089 50.000 1.21 0.00 41.72 4.49
2028 2088 9.965824 AAAATAACCTCAAAACAGACAATGTAG 57.034 29.630 0.00 0.00 43.00 2.74
2060 2120 0.902531 TGGGGTGTTTTCCGCAAAAA 59.097 45.000 0.16 0.00 45.16 1.94
2061 2121 0.461961 CTGGGGTGTTTTCCGCAAAA 59.538 50.000 4.25 0.00 46.81 2.44
2062 2122 2.022240 GCTGGGGTGTTTTCCGCAAA 62.022 55.000 4.25 0.00 46.81 3.68
2086 2146 8.810990 TGTTTATCACCGGTTATCCTTATTTT 57.189 30.769 2.97 0.00 0.00 1.82
2103 2163 4.010349 TGTGGTGTGTGTGTTGTTTATCA 58.990 39.130 0.00 0.00 0.00 2.15
2105 2165 4.400884 ACATGTGGTGTGTGTGTTGTTTAT 59.599 37.500 0.00 0.00 40.28 1.40
2108 2168 2.166829 ACATGTGGTGTGTGTGTTGTT 58.833 42.857 0.00 0.00 40.28 2.83
2112 2172 2.121291 TCAACATGTGGTGTGTGTGT 57.879 45.000 0.00 0.00 41.14 3.72
2113 2173 3.500558 TTTCAACATGTGGTGTGTGTG 57.499 42.857 0.00 0.00 41.14 3.82
2126 2186 3.892588 GGACCTGGGTGTAATTTTCAACA 59.107 43.478 0.00 0.00 0.00 3.33
2139 2199 2.452114 CTCCTCAGGGACCTGGGT 59.548 66.667 16.63 0.00 42.73 4.51
2145 2205 2.671682 GGTTGGCTCCTCAGGGAC 59.328 66.667 0.00 0.00 36.57 4.46
2210 2270 4.728102 CACGCCGGCTCCACGTAA 62.728 66.667 26.68 0.00 38.09 3.18
2241 2301 0.389757 GACTTCCCGTATCCTGCCTC 59.610 60.000 0.00 0.00 0.00 4.70
2242 2302 1.392710 CGACTTCCCGTATCCTGCCT 61.393 60.000 0.00 0.00 0.00 4.75
2272 2340 1.478916 TGGCGTCTTGATTCGTATGGA 59.521 47.619 0.00 0.00 0.00 3.41
2280 2348 1.002430 TGCTTCTCTGGCGTCTTGATT 59.998 47.619 0.00 0.00 0.00 2.57
2286 2354 0.391661 TCCAATGCTTCTCTGGCGTC 60.392 55.000 0.00 0.00 0.00 5.19
2287 2355 0.254178 ATCCAATGCTTCTCTGGCGT 59.746 50.000 0.00 0.00 0.00 5.68
2290 2358 2.950309 CTCCAATCCAATGCTTCTCTGG 59.050 50.000 0.00 0.00 0.00 3.86
2292 2360 4.018597 AGTTCTCCAATCCAATGCTTCTCT 60.019 41.667 0.00 0.00 0.00 3.10
2315 2383 2.156098 GGTGATGCTTTCAAACCGGTA 58.844 47.619 8.00 0.00 35.70 4.02
2359 2427 0.991920 TCTCCCCGCCAGATTTTTCT 59.008 50.000 0.00 0.00 0.00 2.52
2365 2433 0.399949 TGGTTATCTCCCCGCCAGAT 60.400 55.000 0.00 0.00 34.80 2.90
2367 2435 1.146263 GTGGTTATCTCCCCGCCAG 59.854 63.158 0.00 0.00 0.00 4.85
2368 2436 1.306654 AGTGGTTATCTCCCCGCCA 60.307 57.895 0.00 0.00 31.41 5.69
2370 2438 0.179081 GTGAGTGGTTATCTCCCCGC 60.179 60.000 0.00 0.00 0.00 6.13
2371 2439 0.102481 CGTGAGTGGTTATCTCCCCG 59.898 60.000 0.00 0.00 0.00 5.73
2372 2440 1.409427 CTCGTGAGTGGTTATCTCCCC 59.591 57.143 0.00 0.00 0.00 4.81
2374 2442 4.822896 AGATACTCGTGAGTGGTTATCTCC 59.177 45.833 12.66 0.00 42.52 3.71
2375 2443 5.753744 CAGATACTCGTGAGTGGTTATCTC 58.246 45.833 12.66 0.00 42.52 2.75
2377 2445 4.202020 TGCAGATACTCGTGAGTGGTTATC 60.202 45.833 12.66 7.45 42.52 1.75
2386 2454 2.498807 GCATCTGCAGATACTCGTGA 57.501 50.000 28.27 0.00 41.59 4.35
2454 2522 2.022346 CGATGCGTGCTCATGTGC 59.978 61.111 12.78 12.78 0.00 4.57
2456 2524 3.197790 GGCGATGCGTGCTCATGT 61.198 61.111 0.00 0.00 0.00 3.21
2464 2532 0.812811 TCTAGTAGTCGGCGATGCGT 60.813 55.000 14.79 1.04 0.00 5.24
2475 2543 4.141574 TGGTTGGTTTTGTGCTCTAGTAGT 60.142 41.667 0.00 0.00 0.00 2.73
2519 2587 0.404040 AAGGTTTCCCAATCGAGGCA 59.596 50.000 0.00 0.00 0.00 4.75
2537 2606 1.066430 GGCAGTCGTTGGTGGATCTAA 60.066 52.381 0.00 0.00 0.00 2.10
2547 2616 4.012895 GGTGTGCGGCAGTCGTTG 62.013 66.667 1.18 0.00 41.72 4.10
2551 2620 1.795170 AAATGTGGTGTGCGGCAGTC 61.795 55.000 1.18 0.00 0.00 3.51
2554 2623 1.825622 TGAAATGTGGTGTGCGGCA 60.826 52.632 0.00 0.00 0.00 5.69
2556 2625 0.597568 ATGTGAAATGTGGTGTGCGG 59.402 50.000 0.00 0.00 0.00 5.69
2557 2626 1.001487 ACATGTGAAATGTGGTGTGCG 60.001 47.619 0.00 0.00 0.00 5.34
2566 2635 7.637519 GTCATCTCGTGATTAACATGTGAAATG 59.362 37.037 10.54 3.93 40.04 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.