Multiple sequence alignment - TraesCS3A01G249900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G249900 chr3A 100.000 2597 0 0 1 2597 468252720 468250124 0.000000e+00 4796.0
1 TraesCS3A01G249900 chr3A 93.017 716 40 6 896 1607 468517068 468516359 0.000000e+00 1037.0
2 TraesCS3A01G249900 chr3D 93.508 801 44 5 882 1678 349974548 349973752 0.000000e+00 1184.0
3 TraesCS3A01G249900 chr3D 94.094 745 35 3 1856 2597 349973490 349972752 0.000000e+00 1123.0
4 TraesCS3A01G249900 chr3D 92.975 726 43 4 882 1607 350793292 350792575 0.000000e+00 1051.0
5 TraesCS3A01G249900 chr3D 87.755 49 6 0 1685 1733 261735815 261735767 1.000000e-04 58.4
6 TraesCS3A01G249900 chr3B 93.927 708 34 6 1838 2539 448863743 448863039 0.000000e+00 1061.0
7 TraesCS3A01G249900 chr3B 91.547 769 46 4 882 1646 448864560 448863807 0.000000e+00 1042.0
8 TraesCS3A01G249900 chr3B 93.805 678 37 2 930 1607 449203704 449203032 0.000000e+00 1014.0
9 TraesCS3A01G249900 chr3B 87.549 514 31 12 11 519 20449325 20449810 4.850000e-157 564.0
10 TraesCS3A01G249900 chr3B 96.393 305 11 0 571 875 766049401 766049705 1.070000e-138 503.0
11 TraesCS3A01G249900 chr3B 95.513 312 14 0 571 882 536900996 536901307 1.390000e-137 499.0
12 TraesCS3A01G249900 chr4D 89.662 532 42 7 1 521 201714719 201715248 0.000000e+00 665.0
13 TraesCS3A01G249900 chr4D 85.873 361 45 5 165 521 373212961 373212603 1.890000e-101 379.0
14 TraesCS3A01G249900 chr4D 91.057 246 19 3 277 521 201706628 201706871 1.930000e-86 329.0
15 TraesCS3A01G249900 chr4B 89.374 527 50 4 1 521 138471575 138472101 0.000000e+00 658.0
16 TraesCS3A01G249900 chr4B 96.393 305 11 0 571 875 40215228 40215532 1.070000e-138 503.0
17 TraesCS3A01G249900 chr1A 89.414 529 47 8 1 521 482221938 482222465 0.000000e+00 658.0
18 TraesCS3A01G249900 chr1A 84.310 529 63 12 11 521 504066194 504066720 1.390000e-137 499.0
19 TraesCS3A01G249900 chr1A 95.484 310 13 1 571 880 42225858 42226166 6.460000e-136 494.0
20 TraesCS3A01G249900 chr6A 88.213 526 49 11 1 521 558916890 558917407 1.320000e-172 616.0
21 TraesCS3A01G249900 chr5A 88.123 522 42 8 3 521 442539795 442539291 1.030000e-168 603.0
22 TraesCS3A01G249900 chr5A 95.513 312 14 0 571 882 139481191 139481502 1.390000e-137 499.0
23 TraesCS3A01G249900 chr5B 86.742 528 52 6 1 521 331825222 331825738 2.900000e-159 571.0
24 TraesCS3A01G249900 chr5B 89.389 311 29 4 1 307 659481765 659482075 3.130000e-104 388.0
25 TraesCS3A01G249900 chr7A 96.721 305 10 0 571 875 4784764 4785068 2.310000e-140 508.0
26 TraesCS3A01G249900 chr2B 95.820 311 13 0 566 876 531145266 531144956 1.070000e-138 503.0
27 TraesCS3A01G249900 chr2A 96.382 304 10 1 572 875 43004528 43004226 1.390000e-137 499.0
28 TraesCS3A01G249900 chr2A 91.304 276 13 8 257 522 149241769 149241495 1.470000e-97 366.0
29 TraesCS3A01G249900 chr1B 96.078 306 12 0 571 876 588322414 588322719 1.390000e-137 499.0
30 TraesCS3A01G249900 chr1D 91.740 339 24 3 190 525 417260277 417259940 3.910000e-128 468.0
31 TraesCS3A01G249900 chr1D 84.598 435 48 11 8 428 216720244 216720673 5.170000e-112 414.0
32 TraesCS3A01G249900 chr7D 97.368 38 0 1 1685 1722 526375646 526375610 2.160000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G249900 chr3A 468250124 468252720 2596 True 4796.0 4796 100.000 1 2597 1 chr3A.!!$R1 2596
1 TraesCS3A01G249900 chr3A 468516359 468517068 709 True 1037.0 1037 93.017 896 1607 1 chr3A.!!$R2 711
2 TraesCS3A01G249900 chr3D 349972752 349974548 1796 True 1153.5 1184 93.801 882 2597 2 chr3D.!!$R3 1715
3 TraesCS3A01G249900 chr3D 350792575 350793292 717 True 1051.0 1051 92.975 882 1607 1 chr3D.!!$R2 725
4 TraesCS3A01G249900 chr3B 448863039 448864560 1521 True 1051.5 1061 92.737 882 2539 2 chr3B.!!$R2 1657
5 TraesCS3A01G249900 chr3B 449203032 449203704 672 True 1014.0 1014 93.805 930 1607 1 chr3B.!!$R1 677
6 TraesCS3A01G249900 chr4D 201714719 201715248 529 False 665.0 665 89.662 1 521 1 chr4D.!!$F2 520
7 TraesCS3A01G249900 chr4B 138471575 138472101 526 False 658.0 658 89.374 1 521 1 chr4B.!!$F2 520
8 TraesCS3A01G249900 chr1A 482221938 482222465 527 False 658.0 658 89.414 1 521 1 chr1A.!!$F2 520
9 TraesCS3A01G249900 chr1A 504066194 504066720 526 False 499.0 499 84.310 11 521 1 chr1A.!!$F3 510
10 TraesCS3A01G249900 chr6A 558916890 558917407 517 False 616.0 616 88.213 1 521 1 chr6A.!!$F1 520
11 TraesCS3A01G249900 chr5A 442539291 442539795 504 True 603.0 603 88.123 3 521 1 chr5A.!!$R1 518
12 TraesCS3A01G249900 chr5B 331825222 331825738 516 False 571.0 571 86.742 1 521 1 chr5B.!!$F1 520


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 872 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2466 2671 0.670546 CGACATCGCCTCCAACAACT 60.671 55.0 0.0 0.0 0.0 3.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
275 297 2.431771 CGTCGAACGCCACCATCA 60.432 61.111 0.00 0.00 33.65 3.07
522 580 4.825679 GGGGAGGGAGGGAGGGTG 62.826 77.778 0.00 0.00 0.00 4.61
524 582 4.423209 GGAGGGAGGGAGGGTGCT 62.423 72.222 0.00 0.00 0.00 4.40
525 583 3.086600 GAGGGAGGGAGGGTGCTG 61.087 72.222 0.00 0.00 0.00 4.41
526 584 4.748798 AGGGAGGGAGGGTGCTGG 62.749 72.222 0.00 0.00 0.00 4.85
527 585 4.741239 GGGAGGGAGGGTGCTGGA 62.741 72.222 0.00 0.00 0.00 3.86
528 586 2.367512 GGAGGGAGGGTGCTGGAT 60.368 66.667 0.00 0.00 0.00 3.41
529 587 2.003548 GGAGGGAGGGTGCTGGATT 61.004 63.158 0.00 0.00 0.00 3.01
530 588 1.575447 GGAGGGAGGGTGCTGGATTT 61.575 60.000 0.00 0.00 0.00 2.17
531 589 0.332972 GAGGGAGGGTGCTGGATTTT 59.667 55.000 0.00 0.00 0.00 1.82
532 590 0.786435 AGGGAGGGTGCTGGATTTTT 59.214 50.000 0.00 0.00 0.00 1.94
533 591 2.000048 AGGGAGGGTGCTGGATTTTTA 59.000 47.619 0.00 0.00 0.00 1.52
534 592 2.381961 AGGGAGGGTGCTGGATTTTTAA 59.618 45.455 0.00 0.00 0.00 1.52
535 593 3.012844 AGGGAGGGTGCTGGATTTTTAAT 59.987 43.478 0.00 0.00 0.00 1.40
536 594 3.774766 GGGAGGGTGCTGGATTTTTAATT 59.225 43.478 0.00 0.00 0.00 1.40
537 595 4.225042 GGGAGGGTGCTGGATTTTTAATTT 59.775 41.667 0.00 0.00 0.00 1.82
538 596 5.419542 GGAGGGTGCTGGATTTTTAATTTC 58.580 41.667 0.00 0.00 0.00 2.17
539 597 5.046663 GGAGGGTGCTGGATTTTTAATTTCA 60.047 40.000 0.00 0.00 0.00 2.69
540 598 6.041423 AGGGTGCTGGATTTTTAATTTCAG 57.959 37.500 0.00 0.00 0.00 3.02
541 599 5.779771 AGGGTGCTGGATTTTTAATTTCAGA 59.220 36.000 0.00 0.00 0.00 3.27
542 600 6.071165 AGGGTGCTGGATTTTTAATTTCAGAG 60.071 38.462 0.00 0.00 0.00 3.35
543 601 5.578336 GGTGCTGGATTTTTAATTTCAGAGC 59.422 40.000 0.00 0.00 0.00 4.09
544 602 6.158598 GTGCTGGATTTTTAATTTCAGAGCA 58.841 36.000 0.00 0.00 0.00 4.26
545 603 6.815142 GTGCTGGATTTTTAATTTCAGAGCAT 59.185 34.615 0.00 0.00 35.37 3.79
546 604 7.975616 GTGCTGGATTTTTAATTTCAGAGCATA 59.024 33.333 0.00 0.00 35.37 3.14
547 605 8.698210 TGCTGGATTTTTAATTTCAGAGCATAT 58.302 29.630 0.00 0.00 0.00 1.78
548 606 9.189723 GCTGGATTTTTAATTTCAGAGCATATC 57.810 33.333 0.00 0.00 0.00 1.63
551 609 9.173939 GGATTTTTAATTTCAGAGCATATCACG 57.826 33.333 0.00 0.00 0.00 4.35
552 610 9.722056 GATTTTTAATTTCAGAGCATATCACGT 57.278 29.630 0.00 0.00 0.00 4.49
555 613 9.982291 TTTTAATTTCAGAGCATATCACGTAAC 57.018 29.630 0.00 0.00 0.00 2.50
556 614 5.890110 ATTTCAGAGCATATCACGTAACG 57.110 39.130 0.00 0.00 0.00 3.18
557 615 3.349488 TCAGAGCATATCACGTAACGG 57.651 47.619 0.00 0.00 0.00 4.44
558 616 2.946990 TCAGAGCATATCACGTAACGGA 59.053 45.455 0.00 0.00 0.00 4.69
559 617 3.379057 TCAGAGCATATCACGTAACGGAA 59.621 43.478 0.00 0.00 0.00 4.30
560 618 4.037565 TCAGAGCATATCACGTAACGGAAT 59.962 41.667 0.00 0.00 0.00 3.01
561 619 5.239963 TCAGAGCATATCACGTAACGGAATA 59.760 40.000 0.00 0.00 0.00 1.75
562 620 5.569441 CAGAGCATATCACGTAACGGAATAG 59.431 44.000 0.00 0.00 0.00 1.73
563 621 4.806330 AGCATATCACGTAACGGAATAGG 58.194 43.478 0.00 0.00 0.00 2.57
564 622 3.367025 GCATATCACGTAACGGAATAGGC 59.633 47.826 0.00 0.00 32.10 3.93
565 623 2.521105 ATCACGTAACGGAATAGGCC 57.479 50.000 0.00 0.00 0.00 5.19
566 624 0.461135 TCACGTAACGGAATAGGCCC 59.539 55.000 0.00 0.00 0.00 5.80
567 625 0.176219 CACGTAACGGAATAGGCCCA 59.824 55.000 0.00 0.00 0.00 5.36
568 626 0.176449 ACGTAACGGAATAGGCCCAC 59.824 55.000 0.00 0.00 0.00 4.61
569 627 0.531311 CGTAACGGAATAGGCCCACC 60.531 60.000 0.00 0.00 0.00 4.61
597 655 7.561021 TTTTTGAGCATAAGTACAGACACAA 57.439 32.000 0.00 0.00 0.00 3.33
598 656 6.785488 TTTGAGCATAAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
599 657 4.245660 TGAGCATAAGTACAGACACAAGC 58.754 43.478 0.00 0.00 0.00 4.01
600 658 3.254060 AGCATAAGTACAGACACAAGCG 58.746 45.455 0.00 0.00 0.00 4.68
601 659 2.222819 GCATAAGTACAGACACAAGCGC 60.223 50.000 0.00 0.00 0.00 5.92
602 660 3.254060 CATAAGTACAGACACAAGCGCT 58.746 45.455 2.64 2.64 0.00 5.92
603 661 1.784525 AAGTACAGACACAAGCGCTC 58.215 50.000 12.06 0.00 0.00 5.03
604 662 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
605 663 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
606 664 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
607 665 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
608 666 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
609 667 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
610 668 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
611 669 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
612 670 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
616 674 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
617 675 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
618 676 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
619 677 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
620 678 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
621 679 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
622 680 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
623 681 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
624 682 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
625 683 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
626 684 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
627 685 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
628 686 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
629 687 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
630 688 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
631 689 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
632 690 2.341257 GCGCATACACTCATCCCTATG 58.659 52.381 0.30 0.00 0.00 2.23
633 691 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
634 692 3.554960 GCGCATACACTCATCCCTATGAA 60.555 47.826 0.30 0.00 41.57 2.57
635 693 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
636 694 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
637 695 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
638 696 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
639 697 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
640 698 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
641 699 2.205074 CTCATCCCTATGAACGCACAC 58.795 52.381 0.00 0.00 41.57 3.82
642 700 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
643 701 1.665679 CATCCCTATGAACGCACACAC 59.334 52.381 0.00 0.00 34.84 3.82
644 702 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
645 703 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
646 704 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
647 705 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
648 706 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
649 707 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
650 708 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
653 711 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
654 712 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
655 713 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
656 714 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
657 715 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
658 716 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
659 717 1.198759 ACACGCACACCCTATCCCTT 61.199 55.000 0.00 0.00 0.00 3.95
660 718 0.035439 CACGCACACCCTATCCCTTT 60.035 55.000 0.00 0.00 0.00 3.11
661 719 0.035439 ACGCACACCCTATCCCTTTG 60.035 55.000 0.00 0.00 0.00 2.77
662 720 0.251916 CGCACACCCTATCCCTTTGA 59.748 55.000 0.00 0.00 0.00 2.69
663 721 1.743772 CGCACACCCTATCCCTTTGAG 60.744 57.143 0.00 0.00 0.00 3.02
664 722 2.019156 GCACACCCTATCCCTTTGAGC 61.019 57.143 0.00 0.00 0.00 4.26
665 723 1.281867 CACACCCTATCCCTTTGAGCA 59.718 52.381 0.00 0.00 0.00 4.26
666 724 1.282157 ACACCCTATCCCTTTGAGCAC 59.718 52.381 0.00 0.00 0.00 4.40
667 725 0.919710 ACCCTATCCCTTTGAGCACC 59.080 55.000 0.00 0.00 0.00 5.01
668 726 1.216990 CCCTATCCCTTTGAGCACCT 58.783 55.000 0.00 0.00 0.00 4.00
669 727 1.141858 CCCTATCCCTTTGAGCACCTC 59.858 57.143 0.00 0.00 0.00 3.85
670 728 1.141858 CCTATCCCTTTGAGCACCTCC 59.858 57.143 0.00 0.00 0.00 4.30
671 729 0.830648 TATCCCTTTGAGCACCTCCG 59.169 55.000 0.00 0.00 0.00 4.63
672 730 0.909610 ATCCCTTTGAGCACCTCCGA 60.910 55.000 0.00 0.00 0.00 4.55
673 731 1.078848 CCCTTTGAGCACCTCCGAG 60.079 63.158 0.00 0.00 0.00 4.63
674 732 1.544825 CCCTTTGAGCACCTCCGAGA 61.545 60.000 0.00 0.00 0.00 4.04
675 733 0.108424 CCTTTGAGCACCTCCGAGAG 60.108 60.000 0.00 0.00 0.00 3.20
676 734 0.891373 CTTTGAGCACCTCCGAGAGA 59.109 55.000 0.00 0.00 0.00 3.10
677 735 0.603569 TTTGAGCACCTCCGAGAGAC 59.396 55.000 0.00 0.00 0.00 3.36
678 736 0.251386 TTGAGCACCTCCGAGAGACT 60.251 55.000 0.00 0.00 0.00 3.24
679 737 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
680 738 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
681 739 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
682 740 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
683 741 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
684 742 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
685 743 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
686 744 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
687 745 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
688 746 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
689 747 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
690 748 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
691 749 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
692 750 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
693 751 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
694 752 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
695 753 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
696 754 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
697 755 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
698 756 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
699 757 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
700 758 1.002888 AGCCGGCATATCATCTTGAGG 59.997 52.381 31.54 0.00 0.00 3.86
701 759 1.271054 GCCGGCATATCATCTTGAGGT 60.271 52.381 24.80 0.00 0.00 3.85
702 760 2.811873 GCCGGCATATCATCTTGAGGTT 60.812 50.000 24.80 0.00 0.00 3.50
703 761 3.480470 CCGGCATATCATCTTGAGGTTT 58.520 45.455 0.00 0.00 0.00 3.27
704 762 4.641396 CCGGCATATCATCTTGAGGTTTA 58.359 43.478 0.00 0.00 0.00 2.01
705 763 4.452455 CCGGCATATCATCTTGAGGTTTAC 59.548 45.833 0.00 0.00 0.00 2.01
706 764 4.150627 CGGCATATCATCTTGAGGTTTACG 59.849 45.833 0.00 0.00 0.00 3.18
707 765 5.297547 GGCATATCATCTTGAGGTTTACGA 58.702 41.667 0.00 0.00 0.00 3.43
708 766 5.758296 GGCATATCATCTTGAGGTTTACGAA 59.242 40.000 0.00 0.00 0.00 3.85
709 767 6.073548 GGCATATCATCTTGAGGTTTACGAAG 60.074 42.308 0.00 0.00 0.00 3.79
711 769 7.306866 GCATATCATCTTGAGGTTTACGAAGTC 60.307 40.741 0.00 0.00 43.93 3.01
712 770 5.462530 TCATCTTGAGGTTTACGAAGTCA 57.537 39.130 0.00 0.00 43.93 3.41
713 771 5.227908 TCATCTTGAGGTTTACGAAGTCAC 58.772 41.667 0.00 0.00 43.93 3.67
714 772 3.986277 TCTTGAGGTTTACGAAGTCACC 58.014 45.455 0.00 0.00 43.93 4.02
715 773 2.427232 TGAGGTTTACGAAGTCACCG 57.573 50.000 0.00 0.00 45.66 4.94
716 774 1.682854 TGAGGTTTACGAAGTCACCGT 59.317 47.619 0.00 0.00 45.66 4.83
717 775 2.884012 TGAGGTTTACGAAGTCACCGTA 59.116 45.455 0.00 0.00 45.66 4.02
718 776 3.058016 TGAGGTTTACGAAGTCACCGTAG 60.058 47.826 0.00 0.00 45.66 3.51
731 789 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
732 790 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
753 811 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
754 812 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
755 813 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
756 814 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
757 815 1.420430 AACGTCTCCTCCCACTGAAA 58.580 50.000 0.00 0.00 0.00 2.69
758 816 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
759 817 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
760 818 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
761 819 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
762 820 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
763 821 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
764 822 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
765 823 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
776 834 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
777 835 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
778 836 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
779 837 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
780 838 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
781 839 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
782 840 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
783 841 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
784 842 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
785 843 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
786 844 4.642885 TCGCCGGAAATCCTGAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
787 845 4.976116 CGCCGGAAATCCTGAAATAAATTC 59.024 41.667 5.05 0.00 38.60 2.17
788 846 5.449862 CGCCGGAAATCCTGAAATAAATTCA 60.450 40.000 5.05 0.00 45.71 2.57
802 860 7.862372 TGAAATAAATTCAGGAATAATGCGAGC 59.138 33.333 0.00 0.00 43.08 5.03
803 861 6.882610 ATAAATTCAGGAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
804 862 4.558538 AATTCAGGAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
805 863 1.953559 TCAGGAATAATGCGAGCACC 58.046 50.000 0.00 0.00 0.00 5.01
806 864 1.209261 TCAGGAATAATGCGAGCACCA 59.791 47.619 0.00 0.00 0.00 4.17
807 865 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
808 866 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
809 867 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
810 868 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
811 869 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
812 870 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
813 871 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
814 872 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
815 873 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
816 874 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
817 875 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
818 876 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
819 877 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
824 882 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
834 892 2.041301 CCTGGTGGGTCGGGGATA 60.041 66.667 0.00 0.00 0.00 2.59
835 893 2.440817 CCTGGTGGGTCGGGGATAC 61.441 68.421 0.00 0.00 0.00 2.24
851 909 3.816994 GGATACCATTGTCCACCTAACC 58.183 50.000 0.00 0.00 33.15 2.85
852 910 3.201266 GGATACCATTGTCCACCTAACCA 59.799 47.826 0.00 0.00 33.15 3.67
853 911 4.141251 GGATACCATTGTCCACCTAACCAT 60.141 45.833 0.00 0.00 33.15 3.55
854 912 3.366052 ACCATTGTCCACCTAACCATC 57.634 47.619 0.00 0.00 0.00 3.51
855 913 2.919602 ACCATTGTCCACCTAACCATCT 59.080 45.455 0.00 0.00 0.00 2.90
856 914 3.054361 ACCATTGTCCACCTAACCATCTC 60.054 47.826 0.00 0.00 0.00 2.75
857 915 3.054434 CCATTGTCCACCTAACCATCTCA 60.054 47.826 0.00 0.00 0.00 3.27
858 916 4.567537 CCATTGTCCACCTAACCATCTCAA 60.568 45.833 0.00 0.00 0.00 3.02
859 917 3.695830 TGTCCACCTAACCATCTCAAC 57.304 47.619 0.00 0.00 0.00 3.18
860 918 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
861 919 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
862 920 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
863 921 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
864 922 3.338249 CACCTAACCATCTCAACCACAG 58.662 50.000 0.00 0.00 0.00 3.66
865 923 2.305927 ACCTAACCATCTCAACCACAGG 59.694 50.000 0.00 0.00 0.00 4.00
866 924 2.305927 CCTAACCATCTCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
874 932 3.432186 AACCACAGGTTGCTTCGC 58.568 55.556 0.00 0.00 45.07 4.70
875 933 2.193536 AACCACAGGTTGCTTCGCC 61.194 57.895 0.00 0.00 45.07 5.54
876 934 3.726517 CCACAGGTTGCTTCGCCG 61.727 66.667 0.00 0.00 0.00 6.46
877 935 3.726517 CACAGGTTGCTTCGCCGG 61.727 66.667 0.00 0.00 0.00 6.13
878 936 3.936203 ACAGGTTGCTTCGCCGGA 61.936 61.111 5.05 0.00 0.00 5.14
879 937 2.668212 CAGGTTGCTTCGCCGGAA 60.668 61.111 5.05 0.00 0.00 4.30
880 938 2.040544 CAGGTTGCTTCGCCGGAAT 61.041 57.895 5.05 0.00 0.00 3.01
887 945 3.976701 CTTCGCCGGAATGCCCACT 62.977 63.158 5.05 0.00 34.14 4.00
913 971 1.065854 CCTCCTCCTCGCACAAAAGAT 60.066 52.381 0.00 0.00 0.00 2.40
1053 1117 1.642215 CGACGACGGATCTGACGAT 59.358 57.895 28.60 15.10 35.72 3.73
1117 1184 1.211212 CCTTCTGGCTGGTCATGATGA 59.789 52.381 0.00 0.00 0.00 2.92
1155 1222 3.987954 TTCCTTGCCCGGGATTCGC 62.988 63.158 29.31 9.06 37.59 4.70
1196 1263 1.741770 GCAACGAGGACAAGCCGAT 60.742 57.895 0.00 0.00 43.43 4.18
1519 1586 0.749049 CCAGCTGGAGATCGACATGA 59.251 55.000 29.88 0.00 37.39 3.07
1586 1653 3.550992 CGGCGTATCACCGTGCAC 61.551 66.667 6.82 6.82 45.70 4.57
1597 1664 0.736325 ACCGTGCACGCTAGCTTAAG 60.736 55.000 33.17 18.13 38.18 1.85
1727 1794 9.753674 ATTGAGTCATTTATTTTAGGACCAAGA 57.246 29.630 0.00 0.00 0.00 3.02
1730 1797 9.449719 GAGTCATTTATTTTAGGACCAAGAGAA 57.550 33.333 0.00 0.00 0.00 2.87
1816 1883 8.840321 CCAGAGGGAATGTGTTATAAACATTAG 58.160 37.037 18.04 9.58 45.81 1.73
1841 1908 8.035394 AGATAGGTATTTATATGCAACTCCACG 58.965 37.037 0.00 0.00 0.00 4.94
2024 2222 8.617290 ACAAGAGATTAACTTACGAAAACCAT 57.383 30.769 0.00 0.00 0.00 3.55
2109 2307 1.474143 GCACATGGGCTAGGAGAGAAC 60.474 57.143 14.19 0.00 0.00 3.01
2117 2315 4.957954 TGGGCTAGGAGAGAACGTTATTAA 59.042 41.667 0.00 0.00 0.00 1.40
2119 2317 6.157904 GGGCTAGGAGAGAACGTTATTAATC 58.842 44.000 0.00 0.00 0.00 1.75
2336 2539 5.611374 TCAGTCAACTTAAGCAAGCTACTT 58.389 37.500 1.29 7.07 34.94 2.24
2378 2583 1.068083 CGACATAGGTGATGCCGCT 59.932 57.895 0.00 0.00 43.70 5.52
2444 2649 1.063792 AGGCATGTGATGTATTGGGCA 60.064 47.619 0.00 0.00 0.00 5.36
2484 2689 0.798776 CAGTTGTTGGAGGCGATGTC 59.201 55.000 0.00 0.00 0.00 3.06
2551 2756 1.725931 GCGACAATGAAAGCAAGGACG 60.726 52.381 0.00 0.00 0.00 4.79
2571 2776 2.358737 AAAGCAAGAGACCGGCCG 60.359 61.111 21.04 21.04 0.00 6.13
2582 2787 1.161843 GACCGGCCGAAGAATTTTCA 58.838 50.000 30.73 0.00 0.00 2.69
2584 2789 0.179200 CCGGCCGAAGAATTTTCACG 60.179 55.000 30.73 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 250 3.589542 CATGGTGGTGGTGGGGGT 61.590 66.667 0.00 0.00 0.00 4.95
324 364 2.429494 GGGCCAGATCTAGCAGCC 59.571 66.667 15.20 14.53 43.09 4.85
429 469 4.465446 CTCCCTCCTCCGCCCTCA 62.465 72.222 0.00 0.00 0.00 3.86
521 579 6.343716 TGCTCTGAAATTAAAAATCCAGCA 57.656 33.333 0.00 0.00 0.00 4.41
522 580 9.189723 GATATGCTCTGAAATTAAAAATCCAGC 57.810 33.333 0.00 0.00 0.00 4.85
525 583 9.173939 CGTGATATGCTCTGAAATTAAAAATCC 57.826 33.333 0.00 0.00 0.00 3.01
526 584 9.722056 ACGTGATATGCTCTGAAATTAAAAATC 57.278 29.630 0.00 0.00 0.00 2.17
529 587 9.982291 GTTACGTGATATGCTCTGAAATTAAAA 57.018 29.630 0.00 0.00 0.00 1.52
530 588 8.325282 CGTTACGTGATATGCTCTGAAATTAAA 58.675 33.333 0.00 0.00 0.00 1.52
531 589 7.042992 CCGTTACGTGATATGCTCTGAAATTAA 60.043 37.037 3.52 0.00 0.00 1.40
532 590 6.419710 CCGTTACGTGATATGCTCTGAAATTA 59.580 38.462 3.52 0.00 0.00 1.40
533 591 5.234329 CCGTTACGTGATATGCTCTGAAATT 59.766 40.000 3.52 0.00 0.00 1.82
534 592 4.745125 CCGTTACGTGATATGCTCTGAAAT 59.255 41.667 3.52 0.00 0.00 2.17
535 593 4.109766 CCGTTACGTGATATGCTCTGAAA 58.890 43.478 3.52 0.00 0.00 2.69
536 594 3.379057 TCCGTTACGTGATATGCTCTGAA 59.621 43.478 3.52 0.00 0.00 3.02
537 595 2.946990 TCCGTTACGTGATATGCTCTGA 59.053 45.455 3.52 0.00 0.00 3.27
538 596 3.349488 TCCGTTACGTGATATGCTCTG 57.651 47.619 3.52 0.00 0.00 3.35
539 597 4.585955 ATTCCGTTACGTGATATGCTCT 57.414 40.909 3.52 0.00 0.00 4.09
540 598 4.857588 CCTATTCCGTTACGTGATATGCTC 59.142 45.833 3.52 0.00 0.00 4.26
541 599 4.806330 CCTATTCCGTTACGTGATATGCT 58.194 43.478 3.52 0.00 0.00 3.79
542 600 3.367025 GCCTATTCCGTTACGTGATATGC 59.633 47.826 3.52 6.58 0.00 3.14
543 601 3.924686 GGCCTATTCCGTTACGTGATATG 59.075 47.826 3.52 0.66 0.00 1.78
544 602 3.056322 GGGCCTATTCCGTTACGTGATAT 60.056 47.826 0.84 1.46 0.00 1.63
545 603 2.297033 GGGCCTATTCCGTTACGTGATA 59.703 50.000 0.84 0.96 0.00 2.15
546 604 1.069668 GGGCCTATTCCGTTACGTGAT 59.930 52.381 0.84 0.00 0.00 3.06
547 605 0.461135 GGGCCTATTCCGTTACGTGA 59.539 55.000 0.84 0.00 0.00 4.35
548 606 0.176219 TGGGCCTATTCCGTTACGTG 59.824 55.000 4.53 0.00 0.00 4.49
549 607 0.176449 GTGGGCCTATTCCGTTACGT 59.824 55.000 4.53 0.00 0.00 3.57
550 608 0.531311 GGTGGGCCTATTCCGTTACG 60.531 60.000 4.53 0.00 0.00 3.18
551 609 0.835276 AGGTGGGCCTATTCCGTTAC 59.165 55.000 4.53 0.00 44.90 2.50
552 610 1.587066 AAGGTGGGCCTATTCCGTTA 58.413 50.000 4.53 0.00 46.33 3.18
553 611 0.702316 AAAGGTGGGCCTATTCCGTT 59.298 50.000 4.53 0.00 46.33 4.44
554 612 0.702316 AAAAGGTGGGCCTATTCCGT 59.298 50.000 4.53 0.00 46.33 4.69
555 613 1.847328 AAAAAGGTGGGCCTATTCCG 58.153 50.000 4.53 0.00 46.33 4.30
573 631 7.561021 TTGTGTCTGTACTTATGCTCAAAAA 57.439 32.000 0.00 0.00 0.00 1.94
574 632 6.293407 GCTTGTGTCTGTACTTATGCTCAAAA 60.293 38.462 0.00 0.00 0.00 2.44
575 633 5.179368 GCTTGTGTCTGTACTTATGCTCAAA 59.821 40.000 0.00 0.00 0.00 2.69
576 634 4.690748 GCTTGTGTCTGTACTTATGCTCAA 59.309 41.667 0.00 0.00 0.00 3.02
577 635 4.245660 GCTTGTGTCTGTACTTATGCTCA 58.754 43.478 0.00 0.00 0.00 4.26
578 636 3.304559 CGCTTGTGTCTGTACTTATGCTC 59.695 47.826 0.00 0.00 0.00 4.26
579 637 3.254060 CGCTTGTGTCTGTACTTATGCT 58.746 45.455 0.00 0.00 0.00 3.79
580 638 2.222819 GCGCTTGTGTCTGTACTTATGC 60.223 50.000 0.00 0.00 0.00 3.14
581 639 3.254060 AGCGCTTGTGTCTGTACTTATG 58.746 45.455 2.64 0.00 0.00 1.90
582 640 3.056821 TGAGCGCTTGTGTCTGTACTTAT 60.057 43.478 13.26 0.00 0.00 1.73
583 641 2.295070 TGAGCGCTTGTGTCTGTACTTA 59.705 45.455 13.26 0.00 0.00 2.24
584 642 1.068588 TGAGCGCTTGTGTCTGTACTT 59.931 47.619 13.26 0.00 0.00 2.24
585 643 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
586 644 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
587 645 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
588 646 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
589 647 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
590 648 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
591 649 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
592 650 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
593 651 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
594 652 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
595 653 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
596 654 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
597 655 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
600 658 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
601 659 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
602 660 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
603 661 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
604 662 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
605 663 3.561503 GATGAGTGTATGCGCGTGTATA 58.438 45.455 13.61 2.40 0.00 1.47
606 664 2.394708 GATGAGTGTATGCGCGTGTAT 58.605 47.619 13.61 4.63 0.00 2.29
607 665 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
608 666 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
609 667 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
610 668 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
611 669 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
612 670 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
613 671 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
614 672 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
615 673 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
616 674 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
617 675 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
618 676 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
619 677 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
620 678 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
621 679 2.205074 GTGTGCGTTCATAGGGATGAG 58.795 52.381 0.00 0.00 43.03 2.90
622 680 1.552792 TGTGTGCGTTCATAGGGATGA 59.447 47.619 0.00 0.00 40.45 2.92
623 681 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
624 682 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
625 683 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
626 684 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
627 685 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
628 686 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
629 687 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
630 688 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
631 689 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
632 690 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
633 691 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
636 694 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
637 695 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
638 696 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
639 697 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
640 698 1.198759 AAGGGATAGGGTGTGCGTGT 61.199 55.000 0.00 0.00 0.00 4.49
641 699 0.035439 AAAGGGATAGGGTGTGCGTG 60.035 55.000 0.00 0.00 0.00 5.34
642 700 0.035439 CAAAGGGATAGGGTGTGCGT 60.035 55.000 0.00 0.00 0.00 5.24
643 701 0.251916 TCAAAGGGATAGGGTGTGCG 59.748 55.000 0.00 0.00 0.00 5.34
644 702 2.019156 GCTCAAAGGGATAGGGTGTGC 61.019 57.143 0.00 0.00 0.00 4.57
645 703 1.281867 TGCTCAAAGGGATAGGGTGTG 59.718 52.381 0.00 0.00 0.00 3.82
646 704 1.282157 GTGCTCAAAGGGATAGGGTGT 59.718 52.381 0.00 0.00 0.00 4.16
647 705 1.408822 GGTGCTCAAAGGGATAGGGTG 60.409 57.143 0.00 0.00 0.00 4.61
648 706 0.919710 GGTGCTCAAAGGGATAGGGT 59.080 55.000 0.00 0.00 0.00 4.34
649 707 1.141858 GAGGTGCTCAAAGGGATAGGG 59.858 57.143 0.00 0.00 0.00 3.53
650 708 1.141858 GGAGGTGCTCAAAGGGATAGG 59.858 57.143 0.00 0.00 31.08 2.57
651 709 1.202580 CGGAGGTGCTCAAAGGGATAG 60.203 57.143 0.00 0.00 31.08 2.08
652 710 0.830648 CGGAGGTGCTCAAAGGGATA 59.169 55.000 0.00 0.00 31.08 2.59
653 711 0.909610 TCGGAGGTGCTCAAAGGGAT 60.910 55.000 0.00 0.00 31.08 3.85
654 712 1.535444 TCGGAGGTGCTCAAAGGGA 60.535 57.895 0.00 0.00 31.08 4.20
655 713 1.078848 CTCGGAGGTGCTCAAAGGG 60.079 63.158 0.00 0.00 31.08 3.95
656 714 0.108424 CTCTCGGAGGTGCTCAAAGG 60.108 60.000 4.96 0.00 31.08 3.11
657 715 0.891373 TCTCTCGGAGGTGCTCAAAG 59.109 55.000 4.96 0.00 31.08 2.77
658 716 0.603569 GTCTCTCGGAGGTGCTCAAA 59.396 55.000 4.96 0.00 31.08 2.69
659 717 0.251386 AGTCTCTCGGAGGTGCTCAA 60.251 55.000 4.96 0.00 31.08 3.02
660 718 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
661 719 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
662 720 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
663 721 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
664 722 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
665 723 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
666 724 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
667 725 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
668 726 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
669 727 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
670 728 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
671 729 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
672 730 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
673 731 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
674 732 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
675 733 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
676 734 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
677 735 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
678 736 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
679 737 2.344950 CTCAAGATGATATGCCGGCTC 58.655 52.381 29.70 17.89 0.00 4.70
680 738 1.002888 CCTCAAGATGATATGCCGGCT 59.997 52.381 29.70 15.76 0.00 5.52
681 739 1.271054 ACCTCAAGATGATATGCCGGC 60.271 52.381 22.73 22.73 0.00 6.13
682 740 2.847327 ACCTCAAGATGATATGCCGG 57.153 50.000 0.00 0.00 0.00 6.13
683 741 4.150627 CGTAAACCTCAAGATGATATGCCG 59.849 45.833 0.00 0.00 0.00 5.69
684 742 5.297547 TCGTAAACCTCAAGATGATATGCC 58.702 41.667 0.00 0.00 0.00 4.40
685 743 6.480320 ACTTCGTAAACCTCAAGATGATATGC 59.520 38.462 0.00 0.00 0.00 3.14
686 744 7.706607 TGACTTCGTAAACCTCAAGATGATATG 59.293 37.037 0.00 0.00 0.00 1.78
687 745 7.707035 GTGACTTCGTAAACCTCAAGATGATAT 59.293 37.037 0.00 0.00 0.00 1.63
688 746 7.033791 GTGACTTCGTAAACCTCAAGATGATA 58.966 38.462 0.00 0.00 0.00 2.15
689 747 5.869888 GTGACTTCGTAAACCTCAAGATGAT 59.130 40.000 0.00 0.00 0.00 2.45
690 748 5.227908 GTGACTTCGTAAACCTCAAGATGA 58.772 41.667 0.00 0.00 0.00 2.92
691 749 4.389077 GGTGACTTCGTAAACCTCAAGATG 59.611 45.833 0.00 0.00 0.00 2.90
692 750 4.566987 GGTGACTTCGTAAACCTCAAGAT 58.433 43.478 0.00 0.00 0.00 2.40
693 751 3.551454 CGGTGACTTCGTAAACCTCAAGA 60.551 47.826 0.00 0.00 0.00 3.02
694 752 2.729882 CGGTGACTTCGTAAACCTCAAG 59.270 50.000 0.00 0.00 0.00 3.02
695 753 2.101249 ACGGTGACTTCGTAAACCTCAA 59.899 45.455 0.00 0.00 39.22 3.02
696 754 1.682854 ACGGTGACTTCGTAAACCTCA 59.317 47.619 0.00 0.00 39.22 3.86
697 755 2.428888 ACGGTGACTTCGTAAACCTC 57.571 50.000 0.00 0.00 39.22 3.85
698 756 2.229784 CCTACGGTGACTTCGTAAACCT 59.770 50.000 0.00 0.00 41.62 3.50
699 757 2.599659 CCTACGGTGACTTCGTAAACC 58.400 52.381 0.00 0.00 41.62 3.27
700 758 1.988467 GCCTACGGTGACTTCGTAAAC 59.012 52.381 0.00 0.00 41.62 2.01
701 759 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
702 760 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
703 761 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
704 762 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
705 763 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
706 764 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
709 767 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
711 769 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
714 772 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
734 792 1.080025 GTGGGAGGAGACGTTTCCG 60.080 63.158 18.59 0.00 42.29 4.30
735 793 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
736 794 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
737 795 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
738 796 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
739 797 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
740 798 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
741 799 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
742 800 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
743 801 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
744 802 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
745 803 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
746 804 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
747 805 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
748 806 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
759 817 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
760 818 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
761 819 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
762 820 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
763 821 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
764 822 4.568152 ATTTATTTCAGGATTTCCGGCG 57.432 40.909 0.00 0.00 42.08 6.46
765 823 5.901552 TGAATTTATTTCAGGATTTCCGGC 58.098 37.500 0.00 0.00 39.44 6.13
776 834 7.862372 GCTCGCATTATTCCTGAATTTATTTCA 59.138 33.333 0.00 0.00 42.09 2.69
777 835 7.862372 TGCTCGCATTATTCCTGAATTTATTTC 59.138 33.333 0.00 0.00 34.72 2.17
778 836 7.649306 GTGCTCGCATTATTCCTGAATTTATTT 59.351 33.333 0.00 0.00 32.50 1.40
779 837 7.141363 GTGCTCGCATTATTCCTGAATTTATT 58.859 34.615 0.00 0.00 32.50 1.40
780 838 6.294176 GGTGCTCGCATTATTCCTGAATTTAT 60.294 38.462 0.00 0.00 32.50 1.40
781 839 5.008613 GGTGCTCGCATTATTCCTGAATTTA 59.991 40.000 0.00 0.00 32.50 1.40
782 840 4.202050 GGTGCTCGCATTATTCCTGAATTT 60.202 41.667 0.00 0.00 32.50 1.82
783 841 3.316308 GGTGCTCGCATTATTCCTGAATT 59.684 43.478 0.00 0.00 32.50 2.17
784 842 2.880890 GGTGCTCGCATTATTCCTGAAT 59.119 45.455 0.00 0.00 34.93 2.57
785 843 2.288666 GGTGCTCGCATTATTCCTGAA 58.711 47.619 0.00 0.00 0.00 3.02
786 844 1.209261 TGGTGCTCGCATTATTCCTGA 59.791 47.619 0.00 0.00 0.00 3.86
787 845 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
788 846 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
789 847 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
790 848 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
791 849 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
792 850 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
793 851 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
794 852 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
795 853 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
796 854 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
797 855 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
798 856 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
799 857 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
800 858 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
801 859 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
817 875 2.041301 TATCCCCGACCCACCAGG 60.041 66.667 0.00 0.00 43.78 4.45
818 876 2.440817 GGTATCCCCGACCCACCAG 61.441 68.421 0.00 0.00 0.00 4.00
819 877 2.365901 GGTATCCCCGACCCACCA 60.366 66.667 0.00 0.00 0.00 4.17
820 878 1.350310 AATGGTATCCCCGACCCACC 61.350 60.000 0.00 0.00 35.99 4.61
821 879 0.179029 CAATGGTATCCCCGACCCAC 60.179 60.000 0.00 0.00 35.99 4.61
822 880 0.622154 ACAATGGTATCCCCGACCCA 60.622 55.000 0.00 0.00 35.99 4.51
823 881 0.108019 GACAATGGTATCCCCGACCC 59.892 60.000 0.00 0.00 35.99 4.46
824 882 0.108019 GGACAATGGTATCCCCGACC 59.892 60.000 0.00 0.00 37.49 4.79
825 883 0.834612 TGGACAATGGTATCCCCGAC 59.165 55.000 0.00 0.00 33.69 4.79
826 884 0.834612 GTGGACAATGGTATCCCCGA 59.165 55.000 0.00 0.00 33.69 5.14
827 885 0.179029 GGTGGACAATGGTATCCCCG 60.179 60.000 0.00 0.00 33.69 5.73
828 886 1.222567 AGGTGGACAATGGTATCCCC 58.777 55.000 0.00 0.00 33.69 4.81
829 887 3.434596 GGTTAGGTGGACAATGGTATCCC 60.435 52.174 0.00 0.00 33.69 3.85
830 888 3.201266 TGGTTAGGTGGACAATGGTATCC 59.799 47.826 0.00 0.00 35.37 2.59
831 889 4.497291 TGGTTAGGTGGACAATGGTATC 57.503 45.455 0.00 0.00 0.00 2.24
832 890 4.726825 AGATGGTTAGGTGGACAATGGTAT 59.273 41.667 0.00 0.00 0.00 2.73
833 891 4.108570 AGATGGTTAGGTGGACAATGGTA 58.891 43.478 0.00 0.00 0.00 3.25
834 892 2.919602 AGATGGTTAGGTGGACAATGGT 59.080 45.455 0.00 0.00 0.00 3.55
835 893 3.054434 TGAGATGGTTAGGTGGACAATGG 60.054 47.826 0.00 0.00 0.00 3.16
836 894 4.220693 TGAGATGGTTAGGTGGACAATG 57.779 45.455 0.00 0.00 0.00 2.82
837 895 4.567747 GGTTGAGATGGTTAGGTGGACAAT 60.568 45.833 0.00 0.00 0.00 2.71
838 896 3.244770 GGTTGAGATGGTTAGGTGGACAA 60.245 47.826 0.00 0.00 0.00 3.18
839 897 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
840 898 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
841 899 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
842 900 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
843 901 3.338249 CTGTGGTTGAGATGGTTAGGTG 58.662 50.000 0.00 0.00 0.00 4.00
844 902 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
845 903 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
846 904 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
869 927 3.508840 GTGGGCATTCCGGCGAAG 61.509 66.667 9.30 0.00 42.43 3.79
870 928 3.561120 AAGTGGGCATTCCGGCGAA 62.561 57.895 9.30 0.58 42.43 4.70
871 929 4.028490 AAGTGGGCATTCCGGCGA 62.028 61.111 9.30 0.00 42.43 5.54
872 930 3.814268 CAAGTGGGCATTCCGGCG 61.814 66.667 0.00 0.00 42.43 6.46
873 931 3.451894 CCAAGTGGGCATTCCGGC 61.452 66.667 0.00 0.00 38.76 6.13
874 932 1.076777 ATCCAAGTGGGCATTCCGG 60.077 57.895 0.00 0.00 38.76 5.14
875 933 1.103398 GGATCCAAGTGGGCATTCCG 61.103 60.000 6.95 0.00 38.76 4.30
876 934 0.259938 AGGATCCAAGTGGGCATTCC 59.740 55.000 15.82 0.25 36.21 3.01
877 935 1.685148 GAGGATCCAAGTGGGCATTC 58.315 55.000 15.82 0.00 36.21 2.67
878 936 3.911719 GAGGATCCAAGTGGGCATT 57.088 52.632 15.82 0.00 36.21 3.56
1035 1093 0.027716 AATCGTCAGATCCGTCGTCG 59.972 55.000 0.00 0.00 35.74 5.12
1038 1096 1.532343 CGCAATCGTCAGATCCGTCG 61.532 60.000 0.00 0.00 35.74 5.12
1117 1184 2.108976 CATCGGCGGCAGGTACAT 59.891 61.111 10.53 0.00 0.00 2.29
1185 1252 2.740714 GCACGTGATCGGCTTGTCC 61.741 63.158 22.23 0.00 41.85 4.02
1455 1522 2.736719 CGTCATGAGGCGAGACAAATCT 60.737 50.000 1.88 0.00 38.15 2.40
1586 1653 4.855388 TCTAAAACGTGTCTTAAGCTAGCG 59.145 41.667 9.55 2.66 0.00 4.26
1701 1768 9.753674 TCTTGGTCCTAAAATAAATGACTCAAT 57.246 29.630 0.00 0.00 0.00 2.57
1702 1769 9.231297 CTCTTGGTCCTAAAATAAATGACTCAA 57.769 33.333 0.00 0.00 0.00 3.02
1703 1770 8.602424 TCTCTTGGTCCTAAAATAAATGACTCA 58.398 33.333 0.00 0.00 0.00 3.41
1704 1771 9.449719 TTCTCTTGGTCCTAAAATAAATGACTC 57.550 33.333 0.00 0.00 0.00 3.36
1705 1772 9.981460 ATTCTCTTGGTCCTAAAATAAATGACT 57.019 29.630 0.00 0.00 0.00 3.41
1754 1821 9.744468 AAAAACTTACATTTAGAAACGAAGCAT 57.256 25.926 0.00 0.00 0.00 3.79
1790 1857 7.645058 AATGTTTATAACACATTCCCTCTGG 57.355 36.000 14.81 0.00 45.50 3.86
1816 1883 8.033038 TCGTGGAGTTGCATATAAATACCTATC 58.967 37.037 0.00 0.00 0.00 2.08
1820 1887 6.854496 TTCGTGGAGTTGCATATAAATACC 57.146 37.500 0.00 0.00 0.00 2.73
2067 2265 9.394767 TGTGCTCAATTATACTGTTATGAACAT 57.605 29.630 0.00 0.00 41.26 2.71
2089 2287 0.833287 TTCTCTCCTAGCCCATGTGC 59.167 55.000 0.00 0.00 0.00 4.57
2117 2315 7.646526 CGAACATGATTGCAATCTATGTTTGAT 59.353 33.333 38.10 28.85 42.21 2.57
2119 2317 6.748658 ACGAACATGATTGCAATCTATGTTTG 59.251 34.615 38.42 38.42 43.29 2.93
2127 2327 4.201851 ACTGCTACGAACATGATTGCAATC 60.202 41.667 28.83 28.83 35.97 2.67
2249 2451 6.172136 TGGATTTGATTGAACCAAACATGT 57.828 33.333 0.00 0.00 36.48 3.21
2336 2539 3.790988 TATAATGCTGCAGCGGTGGCA 62.791 52.381 32.11 18.46 45.83 4.92
2378 2583 1.134068 TGTCAAATTGACCACCGGTGA 60.134 47.619 36.07 16.63 46.40 4.02
2465 2670 0.798776 GACATCGCCTCCAACAACTG 59.201 55.000 0.00 0.00 0.00 3.16
2466 2671 0.670546 CGACATCGCCTCCAACAACT 60.671 55.000 0.00 0.00 0.00 3.16
2484 2689 3.626680 TTCTCGCCTCAAGTCGCCG 62.627 63.158 0.00 0.00 0.00 6.46
2551 2756 2.041115 GCCGGTCTCTTGCTTTCCC 61.041 63.158 1.90 0.00 0.00 3.97
2571 2776 3.128764 GGATCCCCACGTGAAAATTCTTC 59.871 47.826 19.30 2.74 0.00 2.87



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.