Multiple sequence alignment - TraesCS3A01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G249800 chr3A 100.000 4772 0 0 1 4772 468016325 468011554 0.000000e+00 8813.0
1 TraesCS3A01G249800 chr3A 93.443 61 4 0 2552 2612 332556162 332556222 1.830000e-14 91.6
2 TraesCS3A01G249800 chr3B 97.581 2356 40 6 271 2612 448791141 448788789 0.000000e+00 4019.0
3 TraesCS3A01G249800 chr3B 96.719 1463 26 13 3042 4499 448788675 448787230 0.000000e+00 2416.0
4 TraesCS3A01G249800 chr3B 98.354 243 3 1 1 242 448791376 448791134 4.410000e-115 425.0
5 TraesCS3A01G249800 chr3B 94.805 231 11 1 4542 4772 448786960 448786731 4.540000e-95 359.0
6 TraesCS3A01G249800 chr3B 82.308 130 22 1 293 421 631047316 631047445 1.400000e-20 111.0
7 TraesCS3A01G249800 chr3B 89.706 68 7 0 2545 2612 76508240 76508307 2.370000e-13 87.9
8 TraesCS3A01G249800 chr5B 97.964 393 8 0 2610 3002 517189963 517190355 0.000000e+00 682.0
9 TraesCS3A01G249800 chr5B 83.453 139 21 2 288 425 584110731 584110594 1.390000e-25 128.0
10 TraesCS3A01G249800 chr4A 97.710 393 9 0 2610 3002 212693695 212693303 0.000000e+00 676.0
11 TraesCS3A01G249800 chr4B 97.455 393 10 0 2610 3002 396387226 396386834 0.000000e+00 671.0
12 TraesCS3A01G249800 chr4B 91.304 46 4 0 3012 3057 539691361 539691316 3.990000e-06 63.9
13 TraesCS3A01G249800 chr4B 91.304 46 4 0 3012 3057 602511353 602511308 3.990000e-06 63.9
14 TraesCS3A01G249800 chr4B 91.304 46 4 0 3012 3057 614347620 614347575 3.990000e-06 63.9
15 TraesCS3A01G249800 chr4B 89.130 46 5 0 3012 3057 249741356 249741311 1.850000e-04 58.4
16 TraesCS3A01G249800 chr6A 97.000 400 9 3 2602 3001 503431392 503431788 0.000000e+00 669.0
17 TraesCS3A01G249800 chrUn 96.985 398 9 1 2608 3002 37940343 37939946 0.000000e+00 665.0
18 TraesCS3A01G249800 chrUn 100.000 32 0 0 3012 3043 27078851 27078882 5.160000e-05 60.2
19 TraesCS3A01G249800 chrUn 100.000 32 0 0 3012 3043 55009779 55009748 5.160000e-05 60.2
20 TraesCS3A01G249800 chrUn 100.000 32 0 0 3012 3043 73674317 73674348 5.160000e-05 60.2
21 TraesCS3A01G249800 chrUn 100.000 32 0 0 3012 3043 75424055 75424086 5.160000e-05 60.2
22 TraesCS3A01G249800 chrUn 100.000 32 0 0 3012 3043 310881968 310881999 5.160000e-05 60.2
23 TraesCS3A01G249800 chrUn 100.000 31 0 0 3012 3042 353852450 353852480 1.850000e-04 58.4
24 TraesCS3A01G249800 chrUn 100.000 31 0 0 3012 3042 362729123 362729153 1.850000e-04 58.4
25 TraesCS3A01G249800 chrUn 100.000 30 0 0 3014 3043 479534116 479534145 6.670000e-04 56.5
26 TraesCS3A01G249800 chr5A 97.201 393 11 0 2610 3002 409819140 409819532 0.000000e+00 665.0
27 TraesCS3A01G249800 chr7B 96.742 399 12 1 2602 3000 540160806 540160409 0.000000e+00 664.0
28 TraesCS3A01G249800 chr7B 90.196 51 5 0 369 419 124237586 124237536 3.080000e-07 67.6
29 TraesCS3A01G249800 chr7A 96.954 394 12 0 2607 3000 707104131 707103738 0.000000e+00 662.0
30 TraesCS3A01G249800 chr2B 96.482 398 14 0 2605 3002 435373545 435373942 0.000000e+00 658.0
31 TraesCS3A01G249800 chr5D 92.308 65 5 0 2548 2612 107745565 107745501 5.080000e-15 93.5
32 TraesCS3A01G249800 chr5D 88.732 71 6 2 2542 2612 241844216 241844148 8.510000e-13 86.1
33 TraesCS3A01G249800 chr5D 83.951 81 12 1 379 458 414229889 414229969 5.120000e-10 76.8
34 TraesCS3A01G249800 chr5D 97.222 36 1 0 3012 3047 21047928 21047893 1.430000e-05 62.1
35 TraesCS3A01G249800 chr1A 94.915 59 3 0 2554 2612 218528339 218528397 5.080000e-15 93.5
36 TraesCS3A01G249800 chr3D 93.443 61 4 0 2552 2612 251316142 251316082 1.830000e-14 91.6
37 TraesCS3A01G249800 chr3D 95.122 41 2 0 3012 3052 359514756 359514716 1.110000e-06 65.8
38 TraesCS3A01G249800 chr3D 100.000 32 0 0 3012 3043 4990854 4990885 5.160000e-05 60.2
39 TraesCS3A01G249800 chr3D 100.000 32 0 0 3012 3043 59854379 59854410 5.160000e-05 60.2
40 TraesCS3A01G249800 chr2D 92.188 64 4 1 2549 2612 23736147 23736085 6.580000e-14 89.8
41 TraesCS3A01G249800 chr6D 90.909 66 4 2 2549 2614 344165837 344165900 2.370000e-13 87.9
42 TraesCS3A01G249800 chr6D 100.000 33 0 0 3012 3044 81770422 81770454 1.430000e-05 62.1
43 TraesCS3A01G249800 chr6D 100.000 32 0 0 3012 3043 40221693 40221662 5.160000e-05 60.2
44 TraesCS3A01G249800 chr6D 100.000 32 0 0 3012 3043 79382319 79382350 5.160000e-05 60.2
45 TraesCS3A01G249800 chr6D 100.000 32 0 0 3012 3043 110786214 110786183 5.160000e-05 60.2
46 TraesCS3A01G249800 chr1D 93.333 45 3 0 3012 3056 314984192 314984148 3.080000e-07 67.6
47 TraesCS3A01G249800 chr4D 91.111 45 4 0 3012 3056 182003598 182003554 1.430000e-05 62.1
48 TraesCS3A01G249800 chr1B 91.111 45 4 0 3013 3057 433102764 433102720 1.430000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G249800 chr3A 468011554 468016325 4771 True 8813.00 8813 100.00000 1 4772 1 chr3A.!!$R1 4771
1 TraesCS3A01G249800 chr3B 448786731 448791376 4645 True 1804.75 4019 96.86475 1 4772 4 chr3B.!!$R1 4771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 306 1.003696 TGGTCCTGAACACACACAACA 59.996 47.619 0.00 0.0 0.00 3.33 F
522 524 1.444836 TAAATGGTTCGACCTTGGCG 58.555 50.000 5.77 0.0 39.58 5.69 F
1300 1302 2.912956 TGTCCCTTGGCTATCTTTCACT 59.087 45.455 0.00 0.0 0.00 3.41 F
2630 2645 0.105709 AGGGGGTGTTTGTTTCCAGG 60.106 55.000 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1432 1434 0.734889 GCATCAGTTCGTGGATTGGG 59.265 55.000 0.00 0.0 0.00 4.12 R
1617 1619 3.833559 ACCCCAGAATTCCAAGTCATT 57.166 42.857 0.65 0.0 0.00 2.57 R
2785 2800 0.031917 ATTGAATGCATGGAGGGGCA 60.032 50.000 0.00 0.0 45.23 5.36 R
4522 4615 0.259938 CCAAAATGAGAGGGGGAGGG 59.740 60.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 6.823689 AGTATTCATTTGTGGATAGTGGACAC 59.176 38.462 0.00 0.00 35.75 3.67
210 212 9.345517 GTAAAAGTGTCATCGTGTTAGTGTATA 57.654 33.333 0.00 0.00 0.00 1.47
244 246 9.409918 ACACACTAACATCTACTATATCACTGT 57.590 33.333 0.00 0.00 0.00 3.55
304 306 1.003696 TGGTCCTGAACACACACAACA 59.996 47.619 0.00 0.00 0.00 3.33
307 309 3.006940 GTCCTGAACACACACAACAAGA 58.993 45.455 0.00 0.00 0.00 3.02
324 326 6.071391 ACAACAAGAGATGAAAACACCAAACT 60.071 34.615 0.00 0.00 0.00 2.66
432 434 8.419442 ACCTCTAACCGTAATAACCTGAATAAG 58.581 37.037 0.00 0.00 0.00 1.73
444 446 6.859112 AACCTGAATAAGAGACTTAGCTCA 57.141 37.500 0.00 0.00 37.37 4.26
507 509 8.145122 TCCGTTTGCATTTACCTTCTTTTAAAT 58.855 29.630 0.00 0.00 0.00 1.40
512 514 8.825667 TGCATTTACCTTCTTTTAAATGGTTC 57.174 30.769 13.29 1.79 42.33 3.62
522 524 1.444836 TAAATGGTTCGACCTTGGCG 58.555 50.000 5.77 0.00 39.58 5.69
540 542 7.988599 ACCTTGGCGTAACTTGTGAATATATAA 59.011 33.333 0.00 0.00 0.00 0.98
547 549 9.241317 CGTAACTTGTGAATATATAACCGAAGT 57.759 33.333 0.00 0.00 0.00 3.01
738 740 6.084326 AGCCTACATTTTTGTGGTAAGTTG 57.916 37.500 0.00 0.00 0.00 3.16
755 757 3.775654 GCTCCAGTCCCACCCTCG 61.776 72.222 0.00 0.00 0.00 4.63
864 866 8.547173 GGATGAAGATGAGGTCCATTAGATAAT 58.453 37.037 0.00 0.00 35.17 1.28
886 888 5.369685 TCGAATGCAAATTTGACTGCTTA 57.630 34.783 22.31 0.00 39.38 3.09
1300 1302 2.912956 TGTCCCTTGGCTATCTTTCACT 59.087 45.455 0.00 0.00 0.00 3.41
1432 1434 4.398247 CTTGCGTATCAAAGAGTTGAAGC 58.602 43.478 0.00 1.61 46.66 3.86
1617 1619 9.719355 CTGATCTTCTCTCTTATAGCTACAGTA 57.281 37.037 0.00 0.00 0.00 2.74
1968 1970 2.403259 GGAACAAATTTGAAGTGCCCG 58.597 47.619 24.64 0.00 0.00 6.13
1976 1978 2.047179 GAAGTGCCCGTGGTCTCC 60.047 66.667 0.00 0.00 0.00 3.71
2050 2052 6.918569 TGTTAACGGTTTTACATCATGTTTGG 59.081 34.615 0.00 0.00 0.00 3.28
2108 2110 2.863809 ACCACTCATTTTCAGGTGTCC 58.136 47.619 0.00 0.00 0.00 4.02
2123 2125 5.534654 TCAGGTGTCCAATTTTCTTACAAGG 59.465 40.000 0.00 0.00 0.00 3.61
2159 2161 1.198178 GATTTTTACCGTGCTGCCGAA 59.802 47.619 11.24 0.00 0.00 4.30
2175 2177 2.675317 GCCGAATACTGTGCTCTTGACT 60.675 50.000 0.00 0.00 0.00 3.41
2389 2393 7.569639 TGCTACGATTCTAGTGTTATCTCTT 57.430 36.000 0.00 0.00 0.00 2.85
2561 2576 7.501844 TGGACAACACGGAATCATATATTACA 58.498 34.615 0.00 0.00 0.00 2.41
2617 2632 2.789323 ACGGATGTATCTAAGGGGGT 57.211 50.000 0.00 0.00 0.00 4.95
2618 2633 2.326428 ACGGATGTATCTAAGGGGGTG 58.674 52.381 0.00 0.00 0.00 4.61
2619 2634 2.326428 CGGATGTATCTAAGGGGGTGT 58.674 52.381 0.00 0.00 0.00 4.16
2620 2635 2.704065 CGGATGTATCTAAGGGGGTGTT 59.296 50.000 0.00 0.00 0.00 3.32
2621 2636 3.135895 CGGATGTATCTAAGGGGGTGTTT 59.864 47.826 0.00 0.00 0.00 2.83
2622 2637 4.461198 GGATGTATCTAAGGGGGTGTTTG 58.539 47.826 0.00 0.00 0.00 2.93
2623 2638 4.079958 GGATGTATCTAAGGGGGTGTTTGT 60.080 45.833 0.00 0.00 0.00 2.83
2624 2639 5.506708 GATGTATCTAAGGGGGTGTTTGTT 58.493 41.667 0.00 0.00 0.00 2.83
2625 2640 5.327737 TGTATCTAAGGGGGTGTTTGTTT 57.672 39.130 0.00 0.00 0.00 2.83
2626 2641 5.318630 TGTATCTAAGGGGGTGTTTGTTTC 58.681 41.667 0.00 0.00 0.00 2.78
2627 2642 3.232720 TCTAAGGGGGTGTTTGTTTCC 57.767 47.619 0.00 0.00 0.00 3.13
2628 2643 2.514582 TCTAAGGGGGTGTTTGTTTCCA 59.485 45.455 0.00 0.00 0.00 3.53
2629 2644 1.788229 AAGGGGGTGTTTGTTTCCAG 58.212 50.000 0.00 0.00 0.00 3.86
2630 2645 0.105709 AGGGGGTGTTTGTTTCCAGG 60.106 55.000 0.00 0.00 0.00 4.45
2631 2646 1.118965 GGGGGTGTTTGTTTCCAGGG 61.119 60.000 0.00 0.00 0.00 4.45
2632 2647 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
2633 2648 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
2634 2649 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
2635 2650 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
2636 2651 2.764010 GGTGTTTGTTTCCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
2637 2652 3.196901 GGTGTTTGTTTCCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
2638 2653 4.323180 GGTGTTTGTTTCCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
2660 2675 7.797038 TTTTGTGTAGGGACTAGAAAAAGTC 57.203 36.000 0.00 0.00 41.46 3.01
2671 2686 7.706100 GACTAGAAAAAGTCCCTCTTAGAGA 57.294 40.000 11.32 0.00 40.06 3.10
2672 2687 8.301252 GACTAGAAAAAGTCCCTCTTAGAGAT 57.699 38.462 11.32 0.00 40.06 2.75
2673 2688 8.673456 ACTAGAAAAAGTCCCTCTTAGAGATT 57.327 34.615 11.32 0.00 35.02 2.40
2674 2689 9.106977 ACTAGAAAAAGTCCCTCTTAGAGATTT 57.893 33.333 11.32 3.75 35.02 2.17
2675 2690 9.952030 CTAGAAAAAGTCCCTCTTAGAGATTTT 57.048 33.333 11.32 9.12 35.02 1.82
2694 2709 2.275134 TTTTACCAAACGGGAGGGAC 57.725 50.000 0.00 0.00 41.15 4.46
2696 2711 1.437397 TTACCAAACGGGAGGGACTT 58.563 50.000 0.00 0.00 41.55 3.01
2697 2712 1.437397 TACCAAACGGGAGGGACTTT 58.563 50.000 0.00 0.00 41.55 2.66
2698 2713 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
2699 2714 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
2700 2715 2.175284 ACCAAACGGGAGGGACTTTTTA 59.825 45.455 0.00 0.00 41.55 1.52
2701 2716 2.817844 CCAAACGGGAGGGACTTTTTAG 59.182 50.000 0.00 0.00 41.55 1.85
2702 2717 2.817844 CAAACGGGAGGGACTTTTTAGG 59.182 50.000 0.00 0.00 41.55 2.69
2703 2718 0.989602 ACGGGAGGGACTTTTTAGGG 59.010 55.000 0.00 0.00 41.55 3.53
2704 2719 1.282382 CGGGAGGGACTTTTTAGGGA 58.718 55.000 0.00 0.00 41.55 4.20
2705 2720 1.065636 CGGGAGGGACTTTTTAGGGAC 60.066 57.143 0.00 0.00 41.55 4.46
2706 2721 2.276391 GGGAGGGACTTTTTAGGGACT 58.724 52.381 0.00 0.00 41.55 3.85
2707 2722 3.457836 GGGAGGGACTTTTTAGGGACTA 58.542 50.000 0.00 0.00 41.55 2.59
2708 2723 3.848377 GGGAGGGACTTTTTAGGGACTAA 59.152 47.826 0.00 0.00 45.97 2.24
2721 2736 4.236527 AGGGACTAAACTAGGCATTTGG 57.763 45.455 0.00 0.00 36.02 3.28
2722 2737 3.053619 AGGGACTAAACTAGGCATTTGGG 60.054 47.826 0.00 0.00 36.02 4.12
2723 2738 3.053917 GGGACTAAACTAGGCATTTGGGA 60.054 47.826 0.00 0.00 34.70 4.37
2724 2739 3.945921 GGACTAAACTAGGCATTTGGGAC 59.054 47.826 0.00 0.00 34.70 4.46
2725 2740 4.324331 GGACTAAACTAGGCATTTGGGACT 60.324 45.833 0.00 0.00 34.70 3.85
2726 2741 5.104652 GGACTAAACTAGGCATTTGGGACTA 60.105 44.000 0.00 0.00 34.70 2.59
2727 2742 6.382919 ACTAAACTAGGCATTTGGGACTAA 57.617 37.500 0.00 0.00 0.00 2.24
2728 2743 6.786122 ACTAAACTAGGCATTTGGGACTAAA 58.214 36.000 0.00 0.00 0.00 1.85
2729 2744 7.410991 ACTAAACTAGGCATTTGGGACTAAAT 58.589 34.615 0.00 0.00 0.00 1.40
2730 2745 6.530019 AAACTAGGCATTTGGGACTAAATG 57.470 37.500 14.45 14.45 46.03 2.32
2731 2746 5.450818 ACTAGGCATTTGGGACTAAATGA 57.549 39.130 20.68 3.88 46.13 2.57
2732 2747 5.826643 ACTAGGCATTTGGGACTAAATGAA 58.173 37.500 20.68 7.74 46.13 2.57
2733 2748 5.888161 ACTAGGCATTTGGGACTAAATGAAG 59.112 40.000 20.68 16.00 46.13 3.02
2734 2749 4.934356 AGGCATTTGGGACTAAATGAAGA 58.066 39.130 20.68 0.00 46.13 2.87
2735 2750 5.332743 AGGCATTTGGGACTAAATGAAGAA 58.667 37.500 20.68 0.00 46.13 2.52
2736 2751 5.420104 AGGCATTTGGGACTAAATGAAGAAG 59.580 40.000 20.68 0.00 46.13 2.85
2737 2752 5.418840 GGCATTTGGGACTAAATGAAGAAGA 59.581 40.000 20.68 0.00 46.13 2.87
2738 2753 6.325596 GCATTTGGGACTAAATGAAGAAGAC 58.674 40.000 20.68 2.40 46.13 3.01
2739 2754 6.151817 GCATTTGGGACTAAATGAAGAAGACT 59.848 38.462 20.68 0.00 46.13 3.24
2740 2755 7.627300 GCATTTGGGACTAAATGAAGAAGACTC 60.627 40.741 20.68 1.26 46.13 3.36
2741 2756 6.688073 TTGGGACTAAATGAAGAAGACTCT 57.312 37.500 0.00 0.00 0.00 3.24
2742 2757 6.287589 TGGGACTAAATGAAGAAGACTCTC 57.712 41.667 0.00 0.00 0.00 3.20
2743 2758 5.780282 TGGGACTAAATGAAGAAGACTCTCA 59.220 40.000 0.00 0.00 0.00 3.27
2744 2759 6.270000 TGGGACTAAATGAAGAAGACTCTCAA 59.730 38.462 0.00 0.00 0.00 3.02
2745 2760 6.816140 GGGACTAAATGAAGAAGACTCTCAAG 59.184 42.308 0.00 0.00 0.00 3.02
2746 2761 6.816140 GGACTAAATGAAGAAGACTCTCAAGG 59.184 42.308 0.00 0.00 0.00 3.61
2747 2762 7.310113 GGACTAAATGAAGAAGACTCTCAAGGA 60.310 40.741 0.00 0.00 0.00 3.36
2748 2763 7.610865 ACTAAATGAAGAAGACTCTCAAGGAG 58.389 38.462 0.00 0.00 46.87 3.69
2749 2764 6.678568 AAATGAAGAAGACTCTCAAGGAGA 57.321 37.500 0.00 0.00 44.45 3.71
2778 2793 7.397892 TTTTTGGGACTTTTTGGGATTTTTC 57.602 32.000 0.00 0.00 0.00 2.29
2779 2794 4.698201 TGGGACTTTTTGGGATTTTTCC 57.302 40.909 0.00 0.00 0.00 3.13
2780 2795 4.040755 TGGGACTTTTTGGGATTTTTCCA 58.959 39.130 0.00 0.00 0.00 3.53
2781 2796 4.475016 TGGGACTTTTTGGGATTTTTCCAA 59.525 37.500 0.00 0.00 41.97 3.53
2782 2797 4.819630 GGGACTTTTTGGGATTTTTCCAAC 59.180 41.667 0.00 0.00 43.20 3.77
2783 2798 5.432645 GGACTTTTTGGGATTTTTCCAACA 58.567 37.500 0.00 0.00 43.20 3.33
2784 2799 5.883115 GGACTTTTTGGGATTTTTCCAACAA 59.117 36.000 0.00 0.00 43.20 2.83
2785 2800 6.545666 GGACTTTTTGGGATTTTTCCAACAAT 59.454 34.615 0.00 0.00 43.20 2.71
2786 2801 7.332213 ACTTTTTGGGATTTTTCCAACAATG 57.668 32.000 0.00 0.00 43.20 2.82
2787 2802 5.764487 TTTTGGGATTTTTCCAACAATGC 57.236 34.783 0.00 0.00 43.20 3.56
2788 2803 3.415457 TGGGATTTTTCCAACAATGCC 57.585 42.857 2.60 2.60 40.42 4.40
2789 2804 2.039613 TGGGATTTTTCCAACAATGCCC 59.960 45.455 6.34 0.00 39.53 5.36
2790 2805 2.617788 GGGATTTTTCCAACAATGCCCC 60.618 50.000 0.00 0.00 35.40 5.80
2791 2806 2.305635 GGATTTTTCCAACAATGCCCCT 59.694 45.455 0.00 0.00 0.00 4.79
2792 2807 3.599343 GATTTTTCCAACAATGCCCCTC 58.401 45.455 0.00 0.00 0.00 4.30
2793 2808 1.347062 TTTTCCAACAATGCCCCTCC 58.653 50.000 0.00 0.00 0.00 4.30
2794 2809 0.189574 TTTCCAACAATGCCCCTCCA 59.810 50.000 0.00 0.00 0.00 3.86
2795 2810 0.413037 TTCCAACAATGCCCCTCCAT 59.587 50.000 0.00 0.00 0.00 3.41
2796 2811 0.324552 TCCAACAATGCCCCTCCATG 60.325 55.000 0.00 0.00 0.00 3.66
2797 2812 1.518774 CAACAATGCCCCTCCATGC 59.481 57.895 0.00 0.00 0.00 4.06
2798 2813 1.078891 AACAATGCCCCTCCATGCA 59.921 52.632 0.00 0.00 42.52 3.96
2801 2816 4.613143 ATGCCCCTCCATGCATTC 57.387 55.556 0.00 0.00 45.52 2.67
2802 2817 1.621938 ATGCCCCTCCATGCATTCA 59.378 52.632 0.00 0.00 45.52 2.57
2803 2818 0.031917 ATGCCCCTCCATGCATTCAA 60.032 50.000 0.00 0.00 45.52 2.69
2804 2819 0.031917 TGCCCCTCCATGCATTCAAT 60.032 50.000 0.00 0.00 31.31 2.57
2805 2820 0.391597 GCCCCTCCATGCATTCAATG 59.608 55.000 0.00 0.00 0.00 2.82
2806 2821 1.045407 CCCCTCCATGCATTCAATGG 58.955 55.000 0.00 0.00 36.82 3.16
2807 2822 0.391597 CCCTCCATGCATTCAATGGC 59.608 55.000 0.00 0.00 35.51 4.40
2808 2823 0.391597 CCTCCATGCATTCAATGGCC 59.608 55.000 0.00 0.00 35.51 5.36
2809 2824 0.391597 CTCCATGCATTCAATGGCCC 59.608 55.000 0.00 0.00 35.51 5.80
2810 2825 1.068417 CCATGCATTCAATGGCCCG 59.932 57.895 0.00 0.00 0.00 6.13
2811 2826 1.593209 CATGCATTCAATGGCCCGC 60.593 57.895 0.00 0.00 0.00 6.13
2812 2827 2.799452 ATGCATTCAATGGCCCGCC 61.799 57.895 0.00 0.00 0.00 6.13
2830 2845 2.747396 CCATCCCATGGTGTTGTTTG 57.253 50.000 11.73 0.00 45.54 2.93
2831 2846 2.246469 CCATCCCATGGTGTTGTTTGA 58.754 47.619 11.73 0.00 45.54 2.69
2832 2847 2.833338 CCATCCCATGGTGTTGTTTGAT 59.167 45.455 11.73 0.27 45.54 2.57
2833 2848 3.261390 CCATCCCATGGTGTTGTTTGATT 59.739 43.478 11.73 0.00 45.54 2.57
2834 2849 4.247258 CATCCCATGGTGTTGTTTGATTG 58.753 43.478 11.73 0.00 0.00 2.67
2835 2850 3.303938 TCCCATGGTGTTGTTTGATTGT 58.696 40.909 11.73 0.00 0.00 2.71
2836 2851 3.708631 TCCCATGGTGTTGTTTGATTGTT 59.291 39.130 11.73 0.00 0.00 2.83
2837 2852 4.895889 TCCCATGGTGTTGTTTGATTGTTA 59.104 37.500 11.73 0.00 0.00 2.41
2838 2853 5.541868 TCCCATGGTGTTGTTTGATTGTTAT 59.458 36.000 11.73 0.00 0.00 1.89
2839 2854 6.042552 TCCCATGGTGTTGTTTGATTGTTATT 59.957 34.615 11.73 0.00 0.00 1.40
2840 2855 6.709846 CCCATGGTGTTGTTTGATTGTTATTT 59.290 34.615 11.73 0.00 0.00 1.40
2841 2856 7.228308 CCCATGGTGTTGTTTGATTGTTATTTT 59.772 33.333 11.73 0.00 0.00 1.82
2842 2857 8.619546 CCATGGTGTTGTTTGATTGTTATTTTT 58.380 29.630 2.57 0.00 0.00 1.94
2843 2858 9.649024 CATGGTGTTGTTTGATTGTTATTTTTC 57.351 29.630 0.00 0.00 0.00 2.29
2844 2859 9.612066 ATGGTGTTGTTTGATTGTTATTTTTCT 57.388 25.926 0.00 0.00 0.00 2.52
2863 2878 8.918202 TTTTTCTATATACTAGGGGCAACATG 57.082 34.615 0.00 0.00 39.74 3.21
2864 2879 6.620877 TTCTATATACTAGGGGCAACATGG 57.379 41.667 0.00 0.00 39.74 3.66
2865 2880 5.661565 TCTATATACTAGGGGCAACATGGT 58.338 41.667 0.00 0.00 39.74 3.55
2866 2881 4.910458 ATATACTAGGGGCAACATGGTC 57.090 45.455 0.00 0.00 39.74 4.02
2867 2882 1.959710 TACTAGGGGCAACATGGTCA 58.040 50.000 0.00 0.00 39.74 4.02
2868 2883 1.298953 ACTAGGGGCAACATGGTCAT 58.701 50.000 0.00 0.00 39.74 3.06
2869 2884 1.640670 ACTAGGGGCAACATGGTCATT 59.359 47.619 0.00 0.00 39.74 2.57
2870 2885 2.042979 ACTAGGGGCAACATGGTCATTT 59.957 45.455 0.00 0.00 39.74 2.32
2871 2886 2.917713 AGGGGCAACATGGTCATTTA 57.082 45.000 0.00 0.00 39.74 1.40
2872 2887 3.182887 AGGGGCAACATGGTCATTTAA 57.817 42.857 0.00 0.00 39.74 1.52
2873 2888 3.723325 AGGGGCAACATGGTCATTTAAT 58.277 40.909 0.00 0.00 39.74 1.40
2874 2889 4.877773 AGGGGCAACATGGTCATTTAATA 58.122 39.130 0.00 0.00 39.74 0.98
2875 2890 5.276440 AGGGGCAACATGGTCATTTAATAA 58.724 37.500 0.00 0.00 39.74 1.40
2876 2891 5.128663 AGGGGCAACATGGTCATTTAATAAC 59.871 40.000 0.00 0.00 39.74 1.89
2877 2892 5.356426 GGGCAACATGGTCATTTAATAACC 58.644 41.667 0.00 0.00 39.74 2.85
2878 2893 5.128663 GGGCAACATGGTCATTTAATAACCT 59.871 40.000 0.00 0.00 39.74 3.50
2879 2894 6.273071 GGCAACATGGTCATTTAATAACCTC 58.727 40.000 0.00 0.00 34.05 3.85
2880 2895 6.096846 GGCAACATGGTCATTTAATAACCTCT 59.903 38.462 0.00 0.00 34.05 3.69
2881 2896 7.284489 GGCAACATGGTCATTTAATAACCTCTA 59.716 37.037 0.00 0.00 34.05 2.43
2882 2897 8.345565 GCAACATGGTCATTTAATAACCTCTAG 58.654 37.037 0.00 0.00 34.05 2.43
2883 2898 8.840321 CAACATGGTCATTTAATAACCTCTAGG 58.160 37.037 0.00 0.00 42.17 3.02
2884 2899 8.331931 ACATGGTCATTTAATAACCTCTAGGA 57.668 34.615 2.23 0.00 38.94 2.94
2885 2900 8.778059 ACATGGTCATTTAATAACCTCTAGGAA 58.222 33.333 2.23 0.00 38.94 3.36
2886 2901 9.277783 CATGGTCATTTAATAACCTCTAGGAAG 57.722 37.037 2.23 0.00 38.94 3.46
2887 2902 7.802117 TGGTCATTTAATAACCTCTAGGAAGG 58.198 38.462 2.23 0.00 42.55 3.46
2888 2903 7.147373 TGGTCATTTAATAACCTCTAGGAAGGG 60.147 40.741 2.23 0.00 41.04 3.95
2889 2904 7.072076 GGTCATTTAATAACCTCTAGGAAGGGA 59.928 40.741 2.23 0.00 41.04 4.20
2890 2905 7.932491 GTCATTTAATAACCTCTAGGAAGGGAC 59.068 40.741 2.23 0.00 41.04 4.46
2891 2906 7.849904 TCATTTAATAACCTCTAGGAAGGGACT 59.150 37.037 2.23 0.00 41.04 3.85
2892 2907 9.155785 CATTTAATAACCTCTAGGAAGGGACTA 57.844 37.037 2.23 0.00 41.04 2.59
2893 2908 8.779096 TTTAATAACCTCTAGGAAGGGACTAG 57.221 38.462 2.23 0.00 41.04 2.57
2894 2909 3.691698 AACCTCTAGGAAGGGACTAGG 57.308 52.381 2.23 0.00 41.04 3.02
2895 2910 1.860906 ACCTCTAGGAAGGGACTAGGG 59.139 57.143 2.23 0.00 41.04 3.53
2896 2911 2.145298 CCTCTAGGAAGGGACTAGGGA 58.855 57.143 1.08 0.00 40.69 4.20
2897 2912 2.158430 CCTCTAGGAAGGGACTAGGGAC 60.158 59.091 1.08 0.00 40.69 4.46
2898 2913 2.787035 CTCTAGGAAGGGACTAGGGACT 59.213 54.545 0.00 0.00 40.69 3.85
2899 2914 3.205733 CTCTAGGAAGGGACTAGGGACTT 59.794 52.174 0.00 0.00 40.69 3.01
2900 2915 3.601537 TCTAGGAAGGGACTAGGGACTTT 59.398 47.826 0.00 0.00 38.49 2.66
2901 2916 3.293215 AGGAAGGGACTAGGGACTTTT 57.707 47.619 0.00 0.00 38.49 2.27
2902 2917 3.610260 AGGAAGGGACTAGGGACTTTTT 58.390 45.455 0.00 0.00 38.49 1.94
2903 2918 4.771338 AGGAAGGGACTAGGGACTTTTTA 58.229 43.478 0.00 0.00 38.49 1.52
2904 2919 4.783763 AGGAAGGGACTAGGGACTTTTTAG 59.216 45.833 0.00 0.00 38.49 1.85
2905 2920 4.535294 GGAAGGGACTAGGGACTTTTTAGT 59.465 45.833 0.00 0.00 38.49 2.24
2906 2921 5.338219 GGAAGGGACTAGGGACTTTTTAGTC 60.338 48.000 0.00 3.01 38.49 2.59
2907 2922 5.026093 AGGGACTAGGGACTTTTTAGTCT 57.974 43.478 9.84 0.00 41.77 3.24
2908 2923 5.024785 AGGGACTAGGGACTTTTTAGTCTC 58.975 45.833 9.84 6.72 42.56 3.36
2912 2927 5.652324 ACTAGGGACTTTTTAGTCTCTGGA 58.348 41.667 20.87 2.39 46.69 3.86
2913 2928 6.082707 ACTAGGGACTTTTTAGTCTCTGGAA 58.917 40.000 20.87 1.77 46.69 3.53
2914 2929 5.906772 AGGGACTTTTTAGTCTCTGGAAA 57.093 39.130 6.89 0.00 46.88 3.13
2915 2930 5.622180 AGGGACTTTTTAGTCTCTGGAAAC 58.378 41.667 6.89 0.00 46.88 2.78
2916 2931 5.132144 AGGGACTTTTTAGTCTCTGGAAACA 59.868 40.000 6.89 0.00 46.88 2.83
2917 2932 5.826208 GGGACTTTTTAGTCTCTGGAAACAA 59.174 40.000 5.40 0.00 38.28 2.83
2918 2933 6.320418 GGGACTTTTTAGTCTCTGGAAACAAA 59.680 38.462 5.40 0.00 38.28 2.83
2919 2934 7.194278 GGACTTTTTAGTCTCTGGAAACAAAC 58.806 38.462 5.40 0.00 38.28 2.93
2920 2935 7.148137 GGACTTTTTAGTCTCTGGAAACAAACA 60.148 37.037 5.40 0.00 38.28 2.83
2921 2936 7.762382 ACTTTTTAGTCTCTGGAAACAAACAG 58.238 34.615 0.00 0.00 42.06 3.16
2922 2937 6.693315 TTTTAGTCTCTGGAAACAAACAGG 57.307 37.500 0.00 0.00 42.06 4.00
2923 2938 5.623956 TTAGTCTCTGGAAACAAACAGGA 57.376 39.130 0.00 0.00 42.06 3.86
2924 2939 4.503714 AGTCTCTGGAAACAAACAGGAA 57.496 40.909 0.00 0.00 42.06 3.36
2925 2940 4.455606 AGTCTCTGGAAACAAACAGGAAG 58.544 43.478 0.00 0.00 42.06 3.46
2926 2941 3.565902 GTCTCTGGAAACAAACAGGAAGG 59.434 47.826 0.00 0.00 42.06 3.46
2927 2942 2.887152 CTCTGGAAACAAACAGGAAGGG 59.113 50.000 0.00 0.00 42.06 3.95
2928 2943 2.512056 TCTGGAAACAAACAGGAAGGGA 59.488 45.455 0.00 0.00 42.06 4.20
2929 2944 2.623416 CTGGAAACAAACAGGAAGGGAC 59.377 50.000 0.00 0.00 42.06 4.46
2930 2945 2.243736 TGGAAACAAACAGGAAGGGACT 59.756 45.455 0.00 0.00 37.83 3.85
2932 2947 4.816264 TGGAAACAAACAGGAAGGGACTTT 60.816 41.667 0.00 0.00 45.15 2.66
2933 2948 6.282034 TGGAAACAAACAGGAAGGGACTTTT 61.282 40.000 0.00 0.00 45.15 2.27
2934 2949 7.711634 TGGAAACAAACAGGAAGGGACTTTTT 61.712 38.462 0.00 0.00 45.15 1.94
2935 2950 8.457149 TGGAAACAAACAGGAAGGGACTTTTTA 61.457 37.037 0.00 0.00 45.15 1.52
2946 2961 5.286760 AGGGACTTTTTAGGGACTAGAGA 57.713 43.478 0.00 0.00 37.71 3.10
2947 2962 5.024785 AGGGACTTTTTAGGGACTAGAGAC 58.975 45.833 0.00 0.00 37.71 3.36
2948 2963 5.024785 GGGACTTTTTAGGGACTAGAGACT 58.975 45.833 0.00 0.00 44.25 3.24
2949 2964 5.484644 GGGACTTTTTAGGGACTAGAGACTT 59.515 44.000 0.00 0.00 44.25 3.01
2950 2965 6.013553 GGGACTTTTTAGGGACTAGAGACTTT 60.014 42.308 0.00 0.00 44.25 2.66
2951 2966 7.451732 GGACTTTTTAGGGACTAGAGACTTTT 58.548 38.462 0.00 0.00 44.25 2.27
2952 2967 7.937942 GGACTTTTTAGGGACTAGAGACTTTTT 59.062 37.037 0.00 0.00 44.25 1.94
2953 2968 9.993454 GACTTTTTAGGGACTAGAGACTTTTTA 57.007 33.333 0.00 0.00 44.25 1.52
2954 2969 9.999660 ACTTTTTAGGGACTAGAGACTTTTTAG 57.000 33.333 0.00 0.00 44.25 1.85
2955 2970 9.999660 CTTTTTAGGGACTAGAGACTTTTTAGT 57.000 33.333 0.00 0.00 44.25 2.24
2957 2972 9.774413 TTTTAGGGACTAGAGACTTTTTAGTTG 57.226 33.333 0.00 0.00 44.25 3.16
2958 2973 6.361768 AGGGACTAGAGACTTTTTAGTTGG 57.638 41.667 0.00 0.00 36.02 3.77
2959 2974 5.248705 AGGGACTAGAGACTTTTTAGTTGGG 59.751 44.000 0.00 0.00 36.02 4.12
2960 2975 5.247792 GGGACTAGAGACTTTTTAGTTGGGA 59.752 44.000 0.00 0.00 0.00 4.37
2961 2976 6.164876 GGACTAGAGACTTTTTAGTTGGGAC 58.835 44.000 0.00 0.00 0.00 4.46
2962 2977 6.014413 GGACTAGAGACTTTTTAGTTGGGACT 60.014 42.308 0.00 0.00 39.97 3.85
2963 2978 7.178097 GGACTAGAGACTTTTTAGTTGGGACTA 59.822 40.741 0.00 0.00 37.33 2.59
2964 2979 8.124808 ACTAGAGACTTTTTAGTTGGGACTAG 57.875 38.462 0.00 0.00 39.43 2.57
2965 2980 7.949006 ACTAGAGACTTTTTAGTTGGGACTAGA 59.051 37.037 0.00 0.00 39.43 2.43
2966 2981 7.613551 AGAGACTTTTTAGTTGGGACTAGAA 57.386 36.000 0.00 0.00 39.43 2.10
2967 2982 8.030913 AGAGACTTTTTAGTTGGGACTAGAAA 57.969 34.615 0.00 3.34 39.04 2.52
2968 2983 8.491958 AGAGACTTTTTAGTTGGGACTAGAAAA 58.508 33.333 0.00 5.68 40.10 2.29
2969 2984 9.117183 GAGACTTTTTAGTTGGGACTAGAAAAA 57.883 33.333 0.00 0.00 40.10 1.94
2970 2985 9.121658 AGACTTTTTAGTTGGGACTAGAAAAAG 57.878 33.333 17.36 17.36 45.76 2.27
2971 2986 8.818622 ACTTTTTAGTTGGGACTAGAAAAAGT 57.181 30.769 18.18 18.18 46.80 2.66
2993 3008 5.801380 GTCCTAGGACTTATGAACCAAACA 58.199 41.667 31.12 0.00 41.57 2.83
2994 3009 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
2995 3010 5.045869 TCCTAGGACTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
2996 3011 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
2997 3012 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
2998 3013 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
2999 3014 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
3038 3076 9.093458 ACAAATCTAAGACAAGAATTTTGGGAT 57.907 29.630 0.00 0.00 33.04 3.85
3163 3252 9.683069 GTGAAATTTTGAGTCACATAGTGATTT 57.317 29.630 2.90 0.00 44.63 2.17
3246 3335 6.917477 TGTTTTTCACTTGAATGCACTATGAC 59.083 34.615 0.00 0.00 33.54 3.06
3273 3362 7.886338 ACAGACCATTCCTGTTTTATTTCTTC 58.114 34.615 0.00 0.00 41.68 2.87
3327 3417 2.393768 CGTGGAGCACTGTGGCATC 61.394 63.158 10.21 0.00 35.83 3.91
3347 3437 6.646653 GGCATCGAACTAAACATATCATCTCA 59.353 38.462 0.00 0.00 0.00 3.27
3389 3479 4.924305 ACTACGCCAAGATTAATCGGTA 57.076 40.909 9.78 7.66 0.00 4.02
3619 3709 8.397575 TGCTTCAAATATGTTGGTAAGTAACA 57.602 30.769 0.00 0.00 41.72 2.41
3688 3778 8.267183 ACATGTTATCTCCACAGAATTATGTCA 58.733 33.333 1.93 0.00 30.24 3.58
3714 3804 1.276989 TCCTTGATGGTAACCGGTGAC 59.723 52.381 14.40 14.40 37.07 3.67
3825 3915 4.216902 TCACTGGATCAATGTGCAAGAAAG 59.783 41.667 0.00 0.00 0.00 2.62
3894 3984 7.464710 CGGAATCACAAATAAGCTGAGTTAGAC 60.465 40.741 0.00 0.00 0.00 2.59
3895 3985 7.334421 GGAATCACAAATAAGCTGAGTTAGACA 59.666 37.037 0.00 0.00 0.00 3.41
3896 3986 7.602517 ATCACAAATAAGCTGAGTTAGACAC 57.397 36.000 0.00 0.00 0.00 3.67
3905 3995 1.337728 TGAGTTAGACACGTGGCATGG 60.338 52.381 26.11 2.73 0.00 3.66
3958 4048 2.290641 ACCGCTTCATGGGTACAATGAA 60.291 45.455 17.47 17.47 33.95 2.57
4009 4101 4.218417 GCAGTGACTAAAACAATCATGGGT 59.782 41.667 0.00 0.00 0.00 4.51
4086 4178 2.030457 GGCACATGGAAGAAATACGACG 59.970 50.000 0.00 0.00 0.00 5.12
4115 4207 3.073274 ACGATTGGGAAAGAAGGAAGG 57.927 47.619 0.00 0.00 0.00 3.46
4159 4251 0.995024 AGGAGTGAAATCACCCCCAG 59.005 55.000 18.70 0.00 44.77 4.45
4160 4252 1.770218 AGGAGTGAAATCACCCCCAGT 60.770 52.381 18.70 0.00 44.77 4.00
4262 4355 6.874288 ATTAGCTTGACCTTATGAATCTGC 57.126 37.500 0.00 0.00 0.00 4.26
4278 4371 7.060600 TGAATCTGCTTCATGTTTACTTACG 57.939 36.000 0.00 0.00 38.97 3.18
4301 4394 8.833231 ACGTGTTATAATAATCAGGAATCAGG 57.167 34.615 0.00 0.00 0.00 3.86
4302 4395 8.647796 ACGTGTTATAATAATCAGGAATCAGGA 58.352 33.333 0.00 0.00 0.00 3.86
4303 4396 9.489084 CGTGTTATAATAATCAGGAATCAGGAA 57.511 33.333 0.00 0.00 0.00 3.36
4391 4484 5.163447 CCTCCACATGCTGATTCATCAAAAT 60.163 40.000 0.00 0.00 36.18 1.82
4453 4546 7.912056 TTTCTCCATCTGATTAGTTGTCAAG 57.088 36.000 0.00 0.00 0.00 3.02
4495 4588 6.824305 ATTCTCCACCATTAACTCTGTTTG 57.176 37.500 0.00 0.00 0.00 2.93
4496 4589 5.560722 TCTCCACCATTAACTCTGTTTGA 57.439 39.130 0.00 0.00 0.00 2.69
4497 4590 6.126863 TCTCCACCATTAACTCTGTTTGAT 57.873 37.500 0.00 0.00 0.00 2.57
4498 4591 5.939883 TCTCCACCATTAACTCTGTTTGATG 59.060 40.000 0.00 0.00 0.00 3.07
4499 4592 5.875224 TCCACCATTAACTCTGTTTGATGA 58.125 37.500 0.00 0.00 0.00 2.92
4500 4593 5.939883 TCCACCATTAACTCTGTTTGATGAG 59.060 40.000 0.00 0.00 36.47 2.90
4501 4594 5.124457 CCACCATTAACTCTGTTTGATGAGG 59.876 44.000 0.00 0.00 34.84 3.86
4502 4595 5.124457 CACCATTAACTCTGTTTGATGAGGG 59.876 44.000 0.00 0.00 34.84 4.30
4503 4596 4.096984 CCATTAACTCTGTTTGATGAGGGC 59.903 45.833 0.00 0.00 34.84 5.19
4504 4597 4.640771 TTAACTCTGTTTGATGAGGGCT 57.359 40.909 0.00 0.00 34.84 5.19
4505 4598 3.515602 AACTCTGTTTGATGAGGGCTT 57.484 42.857 0.00 0.00 34.84 4.35
4506 4599 4.640771 AACTCTGTTTGATGAGGGCTTA 57.359 40.909 0.00 0.00 34.84 3.09
4507 4600 4.640771 ACTCTGTTTGATGAGGGCTTAA 57.359 40.909 0.00 0.00 34.84 1.85
4508 4601 4.985538 ACTCTGTTTGATGAGGGCTTAAA 58.014 39.130 0.00 0.00 34.84 1.52
4509 4602 5.385198 ACTCTGTTTGATGAGGGCTTAAAA 58.615 37.500 0.00 0.00 34.84 1.52
4510 4603 5.241728 ACTCTGTTTGATGAGGGCTTAAAAC 59.758 40.000 0.00 0.00 34.84 2.43
4511 4604 5.136828 TCTGTTTGATGAGGGCTTAAAACA 58.863 37.500 0.00 0.00 36.43 2.83
4512 4605 5.774690 TCTGTTTGATGAGGGCTTAAAACAT 59.225 36.000 0.00 0.00 37.03 2.71
4513 4606 6.267471 TCTGTTTGATGAGGGCTTAAAACATT 59.733 34.615 0.00 0.00 37.03 2.71
4514 4607 7.450014 TCTGTTTGATGAGGGCTTAAAACATTA 59.550 33.333 0.00 0.00 37.03 1.90
4515 4608 7.601856 TGTTTGATGAGGGCTTAAAACATTAG 58.398 34.615 0.00 0.00 33.80 1.73
4516 4609 5.835113 TGATGAGGGCTTAAAACATTAGC 57.165 39.130 0.00 0.00 0.00 3.09
4517 4610 5.509498 TGATGAGGGCTTAAAACATTAGCT 58.491 37.500 0.00 0.00 35.30 3.32
4518 4611 5.951747 TGATGAGGGCTTAAAACATTAGCTT 59.048 36.000 0.00 0.00 35.30 3.74
4519 4612 5.897377 TGAGGGCTTAAAACATTAGCTTC 57.103 39.130 0.00 0.00 35.30 3.86
4520 4613 4.705023 TGAGGGCTTAAAACATTAGCTTCC 59.295 41.667 0.00 0.00 35.30 3.46
4521 4614 4.935578 AGGGCTTAAAACATTAGCTTCCT 58.064 39.130 0.00 0.00 35.30 3.36
4522 4615 4.950475 AGGGCTTAAAACATTAGCTTCCTC 59.050 41.667 0.00 0.00 35.30 3.71
4523 4616 4.098044 GGGCTTAAAACATTAGCTTCCTCC 59.902 45.833 0.00 0.00 35.30 4.30
4524 4617 4.098044 GGCTTAAAACATTAGCTTCCTCCC 59.902 45.833 0.00 0.00 35.30 4.30
4525 4618 4.950475 GCTTAAAACATTAGCTTCCTCCCT 59.050 41.667 0.00 0.00 32.26 4.20
4526 4619 5.066634 GCTTAAAACATTAGCTTCCTCCCTC 59.933 44.000 0.00 0.00 32.26 4.30
4527 4620 3.653835 AAACATTAGCTTCCTCCCTCC 57.346 47.619 0.00 0.00 0.00 4.30
4528 4621 1.512735 ACATTAGCTTCCTCCCTCCC 58.487 55.000 0.00 0.00 0.00 4.30
4529 4622 0.767998 CATTAGCTTCCTCCCTCCCC 59.232 60.000 0.00 0.00 0.00 4.81
4530 4623 0.402126 ATTAGCTTCCTCCCTCCCCC 60.402 60.000 0.00 0.00 0.00 5.40
4531 4624 1.537478 TTAGCTTCCTCCCTCCCCCT 61.537 60.000 0.00 0.00 0.00 4.79
4532 4625 1.962570 TAGCTTCCTCCCTCCCCCTC 61.963 65.000 0.00 0.00 0.00 4.30
4533 4626 3.124088 CTTCCTCCCTCCCCCTCT 58.876 66.667 0.00 0.00 0.00 3.69
4534 4627 1.074850 CTTCCTCCCTCCCCCTCTC 60.075 68.421 0.00 0.00 0.00 3.20
4535 4628 1.866997 TTCCTCCCTCCCCCTCTCA 60.867 63.158 0.00 0.00 0.00 3.27
4536 4629 1.238896 TTCCTCCCTCCCCCTCTCAT 61.239 60.000 0.00 0.00 0.00 2.90
4537 4630 1.238896 TCCTCCCTCCCCCTCTCATT 61.239 60.000 0.00 0.00 0.00 2.57
4538 4631 0.327964 CCTCCCTCCCCCTCTCATTT 60.328 60.000 0.00 0.00 0.00 2.32
4539 4632 1.601248 CTCCCTCCCCCTCTCATTTT 58.399 55.000 0.00 0.00 0.00 1.82
4540 4633 1.213926 CTCCCTCCCCCTCTCATTTTG 59.786 57.143 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 9.334947 CACTATCCACAAATGAATACTCTCATT 57.665 33.333 0.00 0.00 45.82 2.57
67 69 7.548097 ACTCTGCCATGTTATATAGATAACCG 58.452 38.462 15.75 8.29 44.71 4.44
259 261 9.736023 CATCGCTAGTTGTATATTCTGCATATA 57.264 33.333 0.00 0.00 30.09 0.86
260 262 7.708322 CCATCGCTAGTTGTATATTCTGCATAT 59.292 37.037 0.00 0.00 32.38 1.78
261 263 7.035612 CCATCGCTAGTTGTATATTCTGCATA 58.964 38.462 0.00 0.00 0.00 3.14
262 264 5.871524 CCATCGCTAGTTGTATATTCTGCAT 59.128 40.000 0.00 0.00 0.00 3.96
263 265 5.221441 ACCATCGCTAGTTGTATATTCTGCA 60.221 40.000 0.00 0.00 0.00 4.41
264 266 5.230942 ACCATCGCTAGTTGTATATTCTGC 58.769 41.667 0.00 0.00 0.00 4.26
265 267 5.864474 GGACCATCGCTAGTTGTATATTCTG 59.136 44.000 0.00 0.00 0.00 3.02
266 268 5.775701 AGGACCATCGCTAGTTGTATATTCT 59.224 40.000 0.00 0.00 0.00 2.40
267 269 5.864474 CAGGACCATCGCTAGTTGTATATTC 59.136 44.000 0.00 0.00 0.00 1.75
268 270 5.538813 TCAGGACCATCGCTAGTTGTATATT 59.461 40.000 0.00 0.00 0.00 1.28
269 271 5.077564 TCAGGACCATCGCTAGTTGTATAT 58.922 41.667 0.00 0.00 0.00 0.86
270 272 4.466827 TCAGGACCATCGCTAGTTGTATA 58.533 43.478 0.00 0.00 0.00 1.47
271 273 3.296854 TCAGGACCATCGCTAGTTGTAT 58.703 45.455 0.00 0.00 0.00 2.29
272 274 2.730382 TCAGGACCATCGCTAGTTGTA 58.270 47.619 0.00 0.00 0.00 2.41
273 275 1.557099 TCAGGACCATCGCTAGTTGT 58.443 50.000 0.00 0.00 0.00 3.32
274 276 2.271800 GTTCAGGACCATCGCTAGTTG 58.728 52.381 0.00 0.00 0.00 3.16
275 277 1.899814 TGTTCAGGACCATCGCTAGTT 59.100 47.619 0.00 0.00 0.00 2.24
276 278 1.204941 GTGTTCAGGACCATCGCTAGT 59.795 52.381 0.00 0.00 0.00 2.57
304 306 6.152661 TGTTCAGTTTGGTGTTTTCATCTCTT 59.847 34.615 0.00 0.00 0.00 2.85
307 309 5.913137 TGTTCAGTTTGGTGTTTTCATCT 57.087 34.783 0.00 0.00 0.00 2.90
324 326 7.148154 CCTGGTTTATTCGGTTTATGATGTTCA 60.148 37.037 0.00 0.00 0.00 3.18
432 434 3.940221 TCTTCGGTAGTGAGCTAAGTCTC 59.060 47.826 0.00 0.00 30.17 3.36
467 469 1.593296 AACGGACTAGAGGGTGACGC 61.593 60.000 0.00 0.00 0.00 5.19
507 509 0.600782 GTTACGCCAAGGTCGAACCA 60.601 55.000 0.00 0.00 41.95 3.67
512 514 0.511221 CACAAGTTACGCCAAGGTCG 59.489 55.000 2.25 2.25 0.00 4.79
540 542 4.884668 TCTAGTCCATGAAAACTTCGGT 57.115 40.909 0.00 0.00 0.00 4.69
547 549 7.386848 CGGTTTCTTACTTCTAGTCCATGAAAA 59.613 37.037 0.00 0.00 0.00 2.29
622 624 6.158023 TCAGTAAACTAAGGCTATGCTACC 57.842 41.667 0.00 0.00 0.00 3.18
670 672 7.423844 TTGCATTCAGATAGAAGGTAGAAGA 57.576 36.000 0.00 0.00 40.07 2.87
738 740 3.775654 CGAGGGTGGGACTGGAGC 61.776 72.222 0.00 0.00 0.00 4.70
819 821 5.716228 TCATCCTTGGTTGATATTTGTTGCT 59.284 36.000 0.00 0.00 0.00 3.91
864 866 3.921119 AGCAGTCAAATTTGCATTCGA 57.079 38.095 13.54 0.00 42.67 3.71
1212 1214 5.509272 GTGTTATCACTGCAAATGTTCATCG 59.491 40.000 0.00 0.00 40.98 3.84
1300 1302 6.704493 GGCAGAATAATATTACGAAGGACACA 59.296 38.462 0.00 0.00 0.00 3.72
1432 1434 0.734889 GCATCAGTTCGTGGATTGGG 59.265 55.000 0.00 0.00 0.00 4.12
1617 1619 3.833559 ACCCCAGAATTCCAAGTCATT 57.166 42.857 0.65 0.00 0.00 2.57
1857 1859 4.034510 CCAATACGGAAAGAATGAGACAGC 59.965 45.833 0.00 0.00 36.56 4.40
1884 1886 9.498176 AAACAACTAGAAATAATACAGACCGTT 57.502 29.630 0.00 0.00 0.00 4.44
1968 1970 5.717119 TCTAACAATAGAAACGGAGACCAC 58.283 41.667 0.00 0.00 35.21 4.16
2014 2016 5.950758 AAACCGTTAACATGCATCTTACA 57.049 34.783 6.39 0.00 0.00 2.41
2050 2052 5.163405 TGGAGATGCCTCATACTTAAGTCAC 60.163 44.000 12.39 0.00 41.20 3.67
2102 2104 5.535030 AGTCCTTGTAAGAAAATTGGACACC 59.465 40.000 11.13 0.00 43.31 4.16
2108 2110 8.802267 TGGGAATAAGTCCTTGTAAGAAAATTG 58.198 33.333 0.00 0.00 46.92 2.32
2123 2125 9.083080 CGGTAAAAATCAAAATGGGAATAAGTC 57.917 33.333 0.00 0.00 0.00 3.01
2175 2177 8.772250 ACAATGAGGAGATAATTCCAGACTAAA 58.228 33.333 0.00 0.00 39.84 1.85
2284 2288 6.318648 AGCTTAATTTGTCTGACTGTCAACAA 59.681 34.615 22.67 22.67 31.03 2.83
2561 2576 3.939066 AGACGAGAATTTTGGAACGGAT 58.061 40.909 0.00 0.00 0.00 4.18
2610 2625 1.691163 CCTGGAAACAAACACCCCCTT 60.691 52.381 0.00 0.00 42.06 3.95
2611 2626 0.105709 CCTGGAAACAAACACCCCCT 60.106 55.000 0.00 0.00 42.06 4.79
2612 2627 1.118965 CCCTGGAAACAAACACCCCC 61.119 60.000 0.00 0.00 42.06 5.40
2613 2628 0.105913 TCCCTGGAAACAAACACCCC 60.106 55.000 0.00 0.00 42.06 4.95
2614 2629 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
2615 2630 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
2616 2631 4.465632 AAAAGTCCCTGGAAACAAACAC 57.534 40.909 0.00 0.00 42.06 3.32
2635 2650 8.217131 GACTTTTTCTAGTCCCTACACAAAAA 57.783 34.615 0.00 0.00 38.88 1.94
2636 2651 7.797038 GACTTTTTCTAGTCCCTACACAAAA 57.203 36.000 0.00 0.00 38.88 2.44
2647 2662 7.706100 TCTCTAAGAGGGACTTTTTCTAGTC 57.294 40.000 0.00 0.00 41.55 2.59
2648 2663 8.673456 AATCTCTAAGAGGGACTTTTTCTAGT 57.327 34.615 0.00 0.00 41.55 2.57
2649 2664 9.952030 AAAATCTCTAAGAGGGACTTTTTCTAG 57.048 33.333 0.00 0.00 41.55 2.43
2674 2689 2.175284 AGTCCCTCCCGTTTGGTAAAAA 59.825 45.455 0.00 0.00 34.77 1.94
2675 2690 1.776063 AGTCCCTCCCGTTTGGTAAAA 59.224 47.619 0.00 0.00 34.77 1.52
2676 2691 1.437397 AGTCCCTCCCGTTTGGTAAA 58.563 50.000 0.00 0.00 34.77 2.01
2677 2692 1.437397 AAGTCCCTCCCGTTTGGTAA 58.563 50.000 0.00 0.00 34.77 2.85
2678 2693 1.437397 AAAGTCCCTCCCGTTTGGTA 58.563 50.000 0.00 0.00 34.77 3.25
2679 2694 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
2680 2695 1.699730 AAAAAGTCCCTCCCGTTTGG 58.300 50.000 0.00 0.00 0.00 3.28
2681 2696 2.817844 CCTAAAAAGTCCCTCCCGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
2682 2697 2.224942 CCCTAAAAAGTCCCTCCCGTTT 60.225 50.000 0.00 0.00 0.00 3.60
2683 2698 1.353358 CCCTAAAAAGTCCCTCCCGTT 59.647 52.381 0.00 0.00 0.00 4.44
2684 2699 0.989602 CCCTAAAAAGTCCCTCCCGT 59.010 55.000 0.00 0.00 0.00 5.28
2685 2700 1.065636 GTCCCTAAAAAGTCCCTCCCG 60.066 57.143 0.00 0.00 0.00 5.14
2686 2701 2.276391 AGTCCCTAAAAAGTCCCTCCC 58.724 52.381 0.00 0.00 0.00 4.30
2687 2702 5.013913 AGTTTAGTCCCTAAAAAGTCCCTCC 59.986 44.000 0.00 0.00 37.62 4.30
2688 2703 6.124316 AGTTTAGTCCCTAAAAAGTCCCTC 57.876 41.667 0.00 0.00 37.62 4.30
2689 2704 6.215023 CCTAGTTTAGTCCCTAAAAAGTCCCT 59.785 42.308 0.00 0.00 37.62 4.20
2690 2705 6.413052 CCTAGTTTAGTCCCTAAAAAGTCCC 58.587 44.000 0.00 0.00 37.62 4.46
2691 2706 5.879223 GCCTAGTTTAGTCCCTAAAAAGTCC 59.121 44.000 0.00 0.00 37.62 3.85
2692 2707 6.470278 TGCCTAGTTTAGTCCCTAAAAAGTC 58.530 40.000 0.00 0.00 37.62 3.01
2693 2708 6.443995 TGCCTAGTTTAGTCCCTAAAAAGT 57.556 37.500 0.00 0.00 37.62 2.66
2694 2709 7.939784 AATGCCTAGTTTAGTCCCTAAAAAG 57.060 36.000 0.00 0.88 37.62 2.27
2695 2710 7.177744 CCAAATGCCTAGTTTAGTCCCTAAAAA 59.822 37.037 0.00 0.00 37.62 1.94
2696 2711 6.661805 CCAAATGCCTAGTTTAGTCCCTAAAA 59.338 38.462 0.00 0.00 37.62 1.52
2697 2712 6.184789 CCAAATGCCTAGTTTAGTCCCTAAA 58.815 40.000 0.00 0.00 34.12 1.85
2698 2713 5.339695 CCCAAATGCCTAGTTTAGTCCCTAA 60.340 44.000 0.00 0.00 0.00 2.69
2699 2714 4.165372 CCCAAATGCCTAGTTTAGTCCCTA 59.835 45.833 0.00 0.00 0.00 3.53
2700 2715 3.053619 CCCAAATGCCTAGTTTAGTCCCT 60.054 47.826 0.00 0.00 0.00 4.20
2701 2716 3.053917 TCCCAAATGCCTAGTTTAGTCCC 60.054 47.826 0.00 0.00 0.00 4.46
2702 2717 3.945921 GTCCCAAATGCCTAGTTTAGTCC 59.054 47.826 0.00 0.00 0.00 3.85
2703 2718 4.844884 AGTCCCAAATGCCTAGTTTAGTC 58.155 43.478 0.00 0.00 0.00 2.59
2704 2719 4.929146 AGTCCCAAATGCCTAGTTTAGT 57.071 40.909 0.00 0.00 0.00 2.24
2705 2720 7.556275 TCATTTAGTCCCAAATGCCTAGTTTAG 59.444 37.037 4.14 0.00 42.89 1.85
2706 2721 7.406916 TCATTTAGTCCCAAATGCCTAGTTTA 58.593 34.615 4.14 0.00 42.89 2.01
2707 2722 6.252995 TCATTTAGTCCCAAATGCCTAGTTT 58.747 36.000 4.14 0.00 42.89 2.66
2708 2723 5.826643 TCATTTAGTCCCAAATGCCTAGTT 58.173 37.500 4.14 0.00 42.89 2.24
2709 2724 5.450818 TCATTTAGTCCCAAATGCCTAGT 57.549 39.130 4.14 0.00 42.89 2.57
2710 2725 6.122277 TCTTCATTTAGTCCCAAATGCCTAG 58.878 40.000 4.14 0.00 42.89 3.02
2711 2726 6.073447 TCTTCATTTAGTCCCAAATGCCTA 57.927 37.500 4.14 0.00 42.89 3.93
2712 2727 4.934356 TCTTCATTTAGTCCCAAATGCCT 58.066 39.130 4.14 0.00 42.89 4.75
2713 2728 5.418840 TCTTCTTCATTTAGTCCCAAATGCC 59.581 40.000 4.14 0.00 42.89 4.40
2714 2729 6.151817 AGTCTTCTTCATTTAGTCCCAAATGC 59.848 38.462 4.14 0.00 42.89 3.56
2715 2730 7.609532 AGAGTCTTCTTCATTTAGTCCCAAATG 59.390 37.037 2.83 2.83 44.00 2.32
2716 2731 7.694093 AGAGTCTTCTTCATTTAGTCCCAAAT 58.306 34.615 0.00 0.00 0.00 2.32
2717 2732 7.079451 AGAGTCTTCTTCATTTAGTCCCAAA 57.921 36.000 0.00 0.00 0.00 3.28
2718 2733 6.270000 TGAGAGTCTTCTTCATTTAGTCCCAA 59.730 38.462 0.00 0.00 32.53 4.12
2719 2734 5.780282 TGAGAGTCTTCTTCATTTAGTCCCA 59.220 40.000 0.00 0.00 32.53 4.37
2720 2735 6.287589 TGAGAGTCTTCTTCATTTAGTCCC 57.712 41.667 0.00 0.00 32.53 4.46
2721 2736 6.816140 CCTTGAGAGTCTTCTTCATTTAGTCC 59.184 42.308 0.00 0.00 32.53 3.85
2722 2737 7.607250 TCCTTGAGAGTCTTCTTCATTTAGTC 58.393 38.462 0.00 0.00 32.53 2.59
2723 2738 7.453126 TCTCCTTGAGAGTCTTCTTCATTTAGT 59.547 37.037 0.00 0.00 43.71 2.24
2724 2739 7.835822 TCTCCTTGAGAGTCTTCTTCATTTAG 58.164 38.462 0.00 0.00 43.71 1.85
2725 2740 7.782897 TCTCCTTGAGAGTCTTCTTCATTTA 57.217 36.000 0.00 0.00 43.71 1.40
2726 2741 6.678568 TCTCCTTGAGAGTCTTCTTCATTT 57.321 37.500 0.00 0.00 43.71 2.32
2754 2769 6.378564 GGAAAAATCCCAAAAAGTCCCAAAAA 59.621 34.615 0.00 0.00 0.00 1.94
2755 2770 5.888724 GGAAAAATCCCAAAAAGTCCCAAAA 59.111 36.000 0.00 0.00 0.00 2.44
2756 2771 5.044846 TGGAAAAATCCCAAAAAGTCCCAAA 60.045 36.000 0.00 0.00 0.00 3.28
2757 2772 4.475016 TGGAAAAATCCCAAAAAGTCCCAA 59.525 37.500 0.00 0.00 0.00 4.12
2758 2773 4.040755 TGGAAAAATCCCAAAAAGTCCCA 58.959 39.130 0.00 0.00 0.00 4.37
2759 2774 4.698201 TGGAAAAATCCCAAAAAGTCCC 57.302 40.909 0.00 0.00 0.00 4.46
2760 2775 5.432645 TGTTGGAAAAATCCCAAAAAGTCC 58.567 37.500 0.00 0.00 44.41 3.85
2761 2776 6.993786 TTGTTGGAAAAATCCCAAAAAGTC 57.006 33.333 0.00 0.00 44.41 3.01
2762 2777 6.183360 GCATTGTTGGAAAAATCCCAAAAAGT 60.183 34.615 0.00 0.00 42.35 2.66
2763 2778 6.207928 GCATTGTTGGAAAAATCCCAAAAAG 58.792 36.000 0.00 0.00 42.35 2.27
2764 2779 5.068329 GGCATTGTTGGAAAAATCCCAAAAA 59.932 36.000 0.00 0.00 44.41 1.94
2765 2780 4.582240 GGCATTGTTGGAAAAATCCCAAAA 59.418 37.500 0.00 0.00 44.41 2.44
2766 2781 4.140536 GGCATTGTTGGAAAAATCCCAAA 58.859 39.130 0.00 0.00 44.41 3.28
2767 2782 3.497584 GGGCATTGTTGGAAAAATCCCAA 60.498 43.478 0.00 0.00 41.04 4.12
2768 2783 2.039613 GGGCATTGTTGGAAAAATCCCA 59.960 45.455 0.00 0.00 0.00 4.37
2769 2784 2.617788 GGGGCATTGTTGGAAAAATCCC 60.618 50.000 0.00 0.00 0.00 3.85
2770 2785 2.305635 AGGGGCATTGTTGGAAAAATCC 59.694 45.455 0.00 0.00 0.00 3.01
2771 2786 3.599343 GAGGGGCATTGTTGGAAAAATC 58.401 45.455 0.00 0.00 0.00 2.17
2772 2787 2.305635 GGAGGGGCATTGTTGGAAAAAT 59.694 45.455 0.00 0.00 0.00 1.82
2773 2788 1.696884 GGAGGGGCATTGTTGGAAAAA 59.303 47.619 0.00 0.00 0.00 1.94
2774 2789 1.347062 GGAGGGGCATTGTTGGAAAA 58.653 50.000 0.00 0.00 0.00 2.29
2775 2790 0.189574 TGGAGGGGCATTGTTGGAAA 59.810 50.000 0.00 0.00 0.00 3.13
2776 2791 0.413037 ATGGAGGGGCATTGTTGGAA 59.587 50.000 0.00 0.00 0.00 3.53
2777 2792 0.324552 CATGGAGGGGCATTGTTGGA 60.325 55.000 0.00 0.00 0.00 3.53
2778 2793 1.963464 GCATGGAGGGGCATTGTTGG 61.963 60.000 0.00 0.00 0.00 3.77
2779 2794 1.259142 TGCATGGAGGGGCATTGTTG 61.259 55.000 0.00 0.00 34.58 3.33
2780 2795 1.078891 TGCATGGAGGGGCATTGTT 59.921 52.632 0.00 0.00 34.58 2.83
2781 2796 2.772224 TGCATGGAGGGGCATTGT 59.228 55.556 0.00 0.00 34.58 2.71
2785 2800 0.031917 ATTGAATGCATGGAGGGGCA 60.032 50.000 0.00 0.00 45.23 5.36
2786 2801 0.391597 CATTGAATGCATGGAGGGGC 59.608 55.000 0.00 0.00 0.00 5.80
2787 2802 1.045407 CCATTGAATGCATGGAGGGG 58.955 55.000 0.00 0.00 37.66 4.79
2788 2803 0.391597 GCCATTGAATGCATGGAGGG 59.608 55.000 7.48 5.62 37.66 4.30
2789 2804 0.391597 GGCCATTGAATGCATGGAGG 59.608 55.000 7.48 3.83 37.66 4.30
2790 2805 0.391597 GGGCCATTGAATGCATGGAG 59.608 55.000 4.39 0.00 37.66 3.86
2791 2806 1.393487 CGGGCCATTGAATGCATGGA 61.393 55.000 4.39 0.00 37.66 3.41
2792 2807 1.068417 CGGGCCATTGAATGCATGG 59.932 57.895 4.39 0.00 38.45 3.66
2793 2808 1.593209 GCGGGCCATTGAATGCATG 60.593 57.895 4.39 0.00 0.00 4.06
2794 2809 2.799452 GGCGGGCCATTGAATGCAT 61.799 57.895 4.39 0.00 35.81 3.96
2795 2810 3.459965 GGCGGGCCATTGAATGCA 61.460 61.111 4.39 0.00 35.81 3.96
2796 2811 3.459965 TGGCGGGCCATTGAATGC 61.460 61.111 8.62 0.00 41.89 3.56
2812 2827 4.247258 CAATCAAACAACACCATGGGATG 58.753 43.478 18.09 13.89 0.00 3.51
2813 2828 3.903090 ACAATCAAACAACACCATGGGAT 59.097 39.130 18.09 3.27 0.00 3.85
2814 2829 3.303938 ACAATCAAACAACACCATGGGA 58.696 40.909 18.09 0.60 0.00 4.37
2815 2830 3.749665 ACAATCAAACAACACCATGGG 57.250 42.857 18.09 7.72 0.00 4.00
2816 2831 7.727331 AAATAACAATCAAACAACACCATGG 57.273 32.000 11.19 11.19 0.00 3.66
2817 2832 9.649024 GAAAAATAACAATCAAACAACACCATG 57.351 29.630 0.00 0.00 0.00 3.66
2818 2833 9.612066 AGAAAAATAACAATCAAACAACACCAT 57.388 25.926 0.00 0.00 0.00 3.55
2837 2852 9.520515 CATGTTGCCCCTAGTATATAGAAAAAT 57.479 33.333 0.00 0.00 0.00 1.82
2838 2853 7.942341 CCATGTTGCCCCTAGTATATAGAAAAA 59.058 37.037 0.00 0.00 0.00 1.94
2839 2854 7.073215 ACCATGTTGCCCCTAGTATATAGAAAA 59.927 37.037 0.00 0.00 0.00 2.29
2840 2855 6.561070 ACCATGTTGCCCCTAGTATATAGAAA 59.439 38.462 0.00 0.00 0.00 2.52
2841 2856 6.088819 ACCATGTTGCCCCTAGTATATAGAA 58.911 40.000 0.00 0.00 0.00 2.10
2842 2857 5.661565 ACCATGTTGCCCCTAGTATATAGA 58.338 41.667 0.00 0.00 0.00 1.98
2843 2858 5.483937 TGACCATGTTGCCCCTAGTATATAG 59.516 44.000 0.00 0.00 0.00 1.31
2844 2859 5.407936 TGACCATGTTGCCCCTAGTATATA 58.592 41.667 0.00 0.00 0.00 0.86
2845 2860 4.239495 TGACCATGTTGCCCCTAGTATAT 58.761 43.478 0.00 0.00 0.00 0.86
2846 2861 3.659841 TGACCATGTTGCCCCTAGTATA 58.340 45.455 0.00 0.00 0.00 1.47
2847 2862 2.487775 TGACCATGTTGCCCCTAGTAT 58.512 47.619 0.00 0.00 0.00 2.12
2848 2863 1.959710 TGACCATGTTGCCCCTAGTA 58.040 50.000 0.00 0.00 0.00 1.82
2849 2864 1.298953 ATGACCATGTTGCCCCTAGT 58.701 50.000 0.00 0.00 0.00 2.57
2850 2865 2.442236 AATGACCATGTTGCCCCTAG 57.558 50.000 0.00 0.00 0.00 3.02
2851 2866 2.917713 AAATGACCATGTTGCCCCTA 57.082 45.000 0.00 0.00 0.00 3.53
2852 2867 2.917713 TAAATGACCATGTTGCCCCT 57.082 45.000 0.00 0.00 0.00 4.79
2853 2868 5.356426 GTTATTAAATGACCATGTTGCCCC 58.644 41.667 0.00 0.00 0.00 5.80
2854 2869 5.128663 AGGTTATTAAATGACCATGTTGCCC 59.871 40.000 6.26 0.00 41.10 5.36
2855 2870 6.096846 AGAGGTTATTAAATGACCATGTTGCC 59.903 38.462 6.26 0.00 41.10 4.52
2856 2871 7.100458 AGAGGTTATTAAATGACCATGTTGC 57.900 36.000 6.26 0.00 41.10 4.17
2857 2872 8.840321 CCTAGAGGTTATTAAATGACCATGTTG 58.160 37.037 6.26 0.00 41.10 3.33
2858 2873 8.778059 TCCTAGAGGTTATTAAATGACCATGTT 58.222 33.333 6.26 0.00 41.10 2.71
2859 2874 8.331931 TCCTAGAGGTTATTAAATGACCATGT 57.668 34.615 6.26 0.00 41.10 3.21
2860 2875 9.277783 CTTCCTAGAGGTTATTAAATGACCATG 57.722 37.037 6.26 0.00 41.10 3.66
2861 2876 8.440771 CCTTCCTAGAGGTTATTAAATGACCAT 58.559 37.037 6.26 0.00 41.10 3.55
2862 2877 7.147373 CCCTTCCTAGAGGTTATTAAATGACCA 60.147 40.741 6.26 0.00 41.10 4.02
2863 2878 7.072076 TCCCTTCCTAGAGGTTATTAAATGACC 59.928 40.741 0.00 0.00 39.09 4.02
2864 2879 7.932491 GTCCCTTCCTAGAGGTTATTAAATGAC 59.068 40.741 0.00 0.00 34.88 3.06
2865 2880 7.849904 AGTCCCTTCCTAGAGGTTATTAAATGA 59.150 37.037 0.00 0.00 34.88 2.57
2866 2881 8.035448 AGTCCCTTCCTAGAGGTTATTAAATG 57.965 38.462 0.00 0.00 34.88 2.32
2867 2882 9.382307 CTAGTCCCTTCCTAGAGGTTATTAAAT 57.618 37.037 0.00 0.00 35.01 1.40
2868 2883 7.788385 CCTAGTCCCTTCCTAGAGGTTATTAAA 59.212 40.741 0.00 0.00 35.01 1.52
2869 2884 7.303713 CCTAGTCCCTTCCTAGAGGTTATTAA 58.696 42.308 0.00 0.00 35.01 1.40
2870 2885 6.183361 CCCTAGTCCCTTCCTAGAGGTTATTA 60.183 46.154 0.00 0.00 35.01 0.98
2871 2886 5.401587 CCCTAGTCCCTTCCTAGAGGTTATT 60.402 48.000 0.00 0.00 35.01 1.40
2872 2887 4.108287 CCCTAGTCCCTTCCTAGAGGTTAT 59.892 50.000 0.00 0.00 35.01 1.89
2873 2888 3.466344 CCCTAGTCCCTTCCTAGAGGTTA 59.534 52.174 0.00 0.00 35.01 2.85
2874 2889 2.247897 CCCTAGTCCCTTCCTAGAGGTT 59.752 54.545 0.00 0.00 35.01 3.50
2875 2890 1.860906 CCCTAGTCCCTTCCTAGAGGT 59.139 57.143 0.00 0.00 35.01 3.85
2876 2891 2.145298 TCCCTAGTCCCTTCCTAGAGG 58.855 57.143 0.00 0.00 35.01 3.69
2877 2892 2.787035 AGTCCCTAGTCCCTTCCTAGAG 59.213 54.545 0.00 0.00 35.01 2.43
2878 2893 2.874447 AGTCCCTAGTCCCTTCCTAGA 58.126 52.381 0.00 0.00 35.01 2.43
2879 2894 3.691698 AAGTCCCTAGTCCCTTCCTAG 57.308 52.381 0.00 0.00 33.23 3.02
2880 2895 4.431158 AAAAGTCCCTAGTCCCTTCCTA 57.569 45.455 0.00 0.00 0.00 2.94
2881 2896 3.293215 AAAAGTCCCTAGTCCCTTCCT 57.707 47.619 0.00 0.00 0.00 3.36
2882 2897 4.535294 ACTAAAAAGTCCCTAGTCCCTTCC 59.465 45.833 0.00 0.00 0.00 3.46
2883 2898 5.484644 AGACTAAAAAGTCCCTAGTCCCTTC 59.515 44.000 2.00 0.00 41.59 3.46
2884 2899 5.413277 AGACTAAAAAGTCCCTAGTCCCTT 58.587 41.667 2.00 0.00 41.59 3.95
2885 2900 5.024785 GAGACTAAAAAGTCCCTAGTCCCT 58.975 45.833 2.00 0.00 41.59 4.20
2886 2901 5.024785 AGAGACTAAAAAGTCCCTAGTCCC 58.975 45.833 2.00 0.00 41.59 4.46
2887 2902 5.105269 CCAGAGACTAAAAAGTCCCTAGTCC 60.105 48.000 2.00 0.00 41.59 3.85
2888 2903 5.715753 TCCAGAGACTAAAAAGTCCCTAGTC 59.284 44.000 2.00 0.00 41.17 2.59
2889 2904 5.652324 TCCAGAGACTAAAAAGTCCCTAGT 58.348 41.667 2.00 0.00 39.50 2.57
2890 2905 6.607004 TTCCAGAGACTAAAAAGTCCCTAG 57.393 41.667 2.00 0.00 39.50 3.02
2891 2906 6.328148 TGTTTCCAGAGACTAAAAAGTCCCTA 59.672 38.462 2.00 0.00 39.50 3.53
2892 2907 5.132144 TGTTTCCAGAGACTAAAAAGTCCCT 59.868 40.000 2.00 0.00 39.50 4.20
2893 2908 5.374071 TGTTTCCAGAGACTAAAAAGTCCC 58.626 41.667 2.00 0.00 39.50 4.46
2894 2909 6.937436 TTGTTTCCAGAGACTAAAAAGTCC 57.063 37.500 2.00 0.00 39.50 3.85
2895 2910 7.758495 TGTTTGTTTCCAGAGACTAAAAAGTC 58.242 34.615 0.00 0.00 39.00 3.01
2896 2911 7.148069 CCTGTTTGTTTCCAGAGACTAAAAAGT 60.148 37.037 0.00 0.00 0.00 2.66
2897 2912 7.067008 TCCTGTTTGTTTCCAGAGACTAAAAAG 59.933 37.037 0.00 0.00 0.00 2.27
2898 2913 6.887545 TCCTGTTTGTTTCCAGAGACTAAAAA 59.112 34.615 0.00 0.00 0.00 1.94
2899 2914 6.419791 TCCTGTTTGTTTCCAGAGACTAAAA 58.580 36.000 0.00 0.00 0.00 1.52
2900 2915 5.996644 TCCTGTTTGTTTCCAGAGACTAAA 58.003 37.500 0.00 0.00 0.00 1.85
2901 2916 5.623956 TCCTGTTTGTTTCCAGAGACTAA 57.376 39.130 0.00 0.00 0.00 2.24
2902 2917 5.454755 CCTTCCTGTTTGTTTCCAGAGACTA 60.455 44.000 0.00 0.00 0.00 2.59
2903 2918 4.455606 CTTCCTGTTTGTTTCCAGAGACT 58.544 43.478 0.00 0.00 0.00 3.24
2904 2919 3.565902 CCTTCCTGTTTGTTTCCAGAGAC 59.434 47.826 0.00 0.00 0.00 3.36
2905 2920 3.435026 CCCTTCCTGTTTGTTTCCAGAGA 60.435 47.826 0.00 0.00 0.00 3.10
2906 2921 2.887152 CCCTTCCTGTTTGTTTCCAGAG 59.113 50.000 0.00 0.00 0.00 3.35
2907 2922 2.512056 TCCCTTCCTGTTTGTTTCCAGA 59.488 45.455 0.00 0.00 0.00 3.86
2908 2923 2.623416 GTCCCTTCCTGTTTGTTTCCAG 59.377 50.000 0.00 0.00 0.00 3.86
2909 2924 2.243736 AGTCCCTTCCTGTTTGTTTCCA 59.756 45.455 0.00 0.00 0.00 3.53
2910 2925 2.945456 AGTCCCTTCCTGTTTGTTTCC 58.055 47.619 0.00 0.00 0.00 3.13
2911 2926 5.339008 AAAAGTCCCTTCCTGTTTGTTTC 57.661 39.130 0.00 0.00 0.00 2.78
2912 2927 5.755409 AAAAAGTCCCTTCCTGTTTGTTT 57.245 34.783 0.00 0.00 0.00 2.83
2913 2928 5.362717 CCTAAAAAGTCCCTTCCTGTTTGTT 59.637 40.000 0.00 0.00 0.00 2.83
2914 2929 4.893524 CCTAAAAAGTCCCTTCCTGTTTGT 59.106 41.667 0.00 0.00 0.00 2.83
2915 2930 4.280929 CCCTAAAAAGTCCCTTCCTGTTTG 59.719 45.833 0.00 0.00 0.00 2.93
2916 2931 4.169264 TCCCTAAAAAGTCCCTTCCTGTTT 59.831 41.667 0.00 0.00 0.00 2.83
2917 2932 3.725267 TCCCTAAAAAGTCCCTTCCTGTT 59.275 43.478 0.00 0.00 0.00 3.16
2918 2933 3.074094 GTCCCTAAAAAGTCCCTTCCTGT 59.926 47.826 0.00 0.00 0.00 4.00
2919 2934 3.330998 AGTCCCTAAAAAGTCCCTTCCTG 59.669 47.826 0.00 0.00 0.00 3.86
2920 2935 3.610260 AGTCCCTAAAAAGTCCCTTCCT 58.390 45.455 0.00 0.00 0.00 3.36
2921 2936 4.781621 TCTAGTCCCTAAAAAGTCCCTTCC 59.218 45.833 0.00 0.00 0.00 3.46
2922 2937 5.720520 TCTCTAGTCCCTAAAAAGTCCCTTC 59.279 44.000 0.00 0.00 0.00 3.46
2923 2938 5.484644 GTCTCTAGTCCCTAAAAAGTCCCTT 59.515 44.000 0.00 0.00 0.00 3.95
2924 2939 5.024785 GTCTCTAGTCCCTAAAAAGTCCCT 58.975 45.833 0.00 0.00 0.00 4.20
2925 2940 5.024785 AGTCTCTAGTCCCTAAAAAGTCCC 58.975 45.833 0.00 0.00 0.00 4.46
2926 2941 6.608539 AAGTCTCTAGTCCCTAAAAAGTCC 57.391 41.667 0.00 0.00 0.00 3.85
2927 2942 8.905660 AAAAAGTCTCTAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 0.00 3.01
2928 2943 9.999660 CTAAAAAGTCTCTAGTCCCTAAAAAGT 57.000 33.333 0.00 0.00 0.00 2.66
2929 2944 9.999660 ACTAAAAAGTCTCTAGTCCCTAAAAAG 57.000 33.333 0.00 0.00 0.00 2.27
2931 2946 9.774413 CAACTAAAAAGTCTCTAGTCCCTAAAA 57.226 33.333 0.00 0.00 0.00 1.52
2932 2947 8.373220 CCAACTAAAAAGTCTCTAGTCCCTAAA 58.627 37.037 0.00 0.00 0.00 1.85
2933 2948 7.038516 CCCAACTAAAAAGTCTCTAGTCCCTAA 60.039 40.741 0.00 0.00 0.00 2.69
2934 2949 6.439692 CCCAACTAAAAAGTCTCTAGTCCCTA 59.560 42.308 0.00 0.00 0.00 3.53
2935 2950 5.248705 CCCAACTAAAAAGTCTCTAGTCCCT 59.751 44.000 0.00 0.00 0.00 4.20
2936 2951 5.247792 TCCCAACTAAAAAGTCTCTAGTCCC 59.752 44.000 0.00 0.00 0.00 4.46
2937 2952 6.014413 AGTCCCAACTAAAAAGTCTCTAGTCC 60.014 42.308 0.00 0.00 32.59 3.85
2938 2953 6.995364 AGTCCCAACTAAAAAGTCTCTAGTC 58.005 40.000 0.00 0.00 32.59 2.59
2939 2954 6.997942 AGTCCCAACTAAAAAGTCTCTAGT 57.002 37.500 0.00 0.00 32.59 2.57
2940 2955 8.350852 TCTAGTCCCAACTAAAAAGTCTCTAG 57.649 38.462 0.00 0.00 37.53 2.43
2941 2956 8.716674 TTCTAGTCCCAACTAAAAAGTCTCTA 57.283 34.615 0.00 0.00 37.53 2.43
2942 2957 7.613551 TTCTAGTCCCAACTAAAAAGTCTCT 57.386 36.000 0.00 0.00 37.53 3.10
2943 2958 8.672823 TTTTCTAGTCCCAACTAAAAAGTCTC 57.327 34.615 0.00 0.00 37.53 3.36
2944 2959 9.121658 CTTTTTCTAGTCCCAACTAAAAAGTCT 57.878 33.333 13.30 0.00 41.21 3.24
2946 2961 8.818622 ACTTTTTCTAGTCCCAACTAAAAAGT 57.181 30.769 17.77 17.77 46.78 2.66
2970 2985 5.801380 TGTTTGGTTCATAAGTCCTAGGAC 58.199 41.667 31.29 31.29 44.86 3.85
2971 2986 5.045869 CCTGTTTGGTTCATAAGTCCTAGGA 60.046 44.000 7.62 7.62 0.00 2.94
2972 2987 5.186198 CCTGTTTGGTTCATAAGTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
2973 2988 5.186198 CCCTGTTTGGTTCATAAGTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
2974 2989 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
2975 2990 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
2976 2991 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
2977 2992 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
2978 2993 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
2979 2994 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
2980 2995 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
2981 2996 3.074687 TGTTAGGCCCTGTTTGGTTCATA 59.925 43.478 0.00 0.00 0.00 2.15
2982 2997 2.158385 TGTTAGGCCCTGTTTGGTTCAT 60.158 45.455 0.00 0.00 0.00 2.57
2983 2998 1.215673 TGTTAGGCCCTGTTTGGTTCA 59.784 47.619 0.00 0.00 0.00 3.18
2984 2999 1.611977 GTGTTAGGCCCTGTTTGGTTC 59.388 52.381 0.00 0.00 0.00 3.62
2985 3000 1.216930 AGTGTTAGGCCCTGTTTGGTT 59.783 47.619 0.00 0.00 0.00 3.67
2986 3001 0.850784 AGTGTTAGGCCCTGTTTGGT 59.149 50.000 0.00 0.00 0.00 3.67
2987 3002 2.871096 TAGTGTTAGGCCCTGTTTGG 57.129 50.000 0.00 0.00 0.00 3.28
2988 3003 4.555906 CGTTTTAGTGTTAGGCCCTGTTTG 60.556 45.833 0.00 0.00 0.00 2.93
2989 3004 3.566742 CGTTTTAGTGTTAGGCCCTGTTT 59.433 43.478 0.00 0.00 0.00 2.83
2990 3005 3.143728 CGTTTTAGTGTTAGGCCCTGTT 58.856 45.455 0.00 0.00 0.00 3.16
2991 3006 2.369532 TCGTTTTAGTGTTAGGCCCTGT 59.630 45.455 0.00 0.00 0.00 4.00
2992 3007 2.740447 GTCGTTTTAGTGTTAGGCCCTG 59.260 50.000 0.00 0.00 0.00 4.45
2993 3008 2.369532 TGTCGTTTTAGTGTTAGGCCCT 59.630 45.455 0.00 0.00 0.00 5.19
2994 3009 2.769893 TGTCGTTTTAGTGTTAGGCCC 58.230 47.619 0.00 0.00 0.00 5.80
2995 3010 4.816786 TTTGTCGTTTTAGTGTTAGGCC 57.183 40.909 0.00 0.00 0.00 5.19
2996 3011 6.237313 AGATTTGTCGTTTTAGTGTTAGGC 57.763 37.500 0.00 0.00 0.00 3.93
2997 3012 9.199982 TCTTAGATTTGTCGTTTTAGTGTTAGG 57.800 33.333 0.00 0.00 0.00 2.69
2999 3014 9.531942 TGTCTTAGATTTGTCGTTTTAGTGTTA 57.468 29.630 0.00 0.00 0.00 2.41
3163 3252 6.166279 CCTGCAGACTTGAACAATACTCTAA 58.834 40.000 17.39 0.00 0.00 2.10
3246 3335 8.567285 AGAAATAAAACAGGAATGGTCTGTAG 57.433 34.615 0.00 0.00 43.82 2.74
3347 3437 8.928733 CGTAGTACACCTACATACAAAAACAAT 58.071 33.333 0.38 0.00 45.40 2.71
3389 3479 2.173519 CCATGGAGGCAACAAACAGAT 58.826 47.619 5.56 0.00 41.41 2.90
3666 3756 7.047891 TGGTGACATAATTCTGTGGAGATAAC 58.952 38.462 0.55 0.00 33.40 1.89
3825 3915 9.549509 CGAGCTAGTTACACTTGAATATATCTC 57.450 37.037 0.00 0.00 0.00 2.75
3894 3984 1.452110 TTGATCTTCCATGCCACGTG 58.548 50.000 9.08 9.08 0.00 4.49
3895 3985 2.019249 CATTGATCTTCCATGCCACGT 58.981 47.619 0.00 0.00 0.00 4.49
3896 3986 1.335810 CCATTGATCTTCCATGCCACG 59.664 52.381 0.00 0.00 0.00 4.94
3905 3995 7.542025 ACACTTATGCTTTTCCATTGATCTTC 58.458 34.615 0.00 0.00 0.00 2.87
3965 4055 0.687354 TGGAACTGCCTCCTTGTCTC 59.313 55.000 0.00 0.00 36.35 3.36
4086 4178 3.005367 TCTTTCCCAATCGTTTTCCTTGC 59.995 43.478 0.00 0.00 0.00 4.01
4115 4207 3.686016 TCTTCATTCTTGTTGGGCCTAC 58.314 45.455 11.39 11.39 0.00 3.18
4298 4391 3.803778 GTGTTTGTTGCTCCAAATTCCTG 59.196 43.478 4.97 0.00 36.75 3.86
4299 4392 3.450457 TGTGTTTGTTGCTCCAAATTCCT 59.550 39.130 4.97 0.00 36.75 3.36
4300 4393 3.791245 TGTGTTTGTTGCTCCAAATTCC 58.209 40.909 4.97 0.00 36.75 3.01
4301 4394 4.259770 CGTTGTGTTTGTTGCTCCAAATTC 60.260 41.667 4.97 3.30 36.75 2.17
4302 4395 3.616379 CGTTGTGTTTGTTGCTCCAAATT 59.384 39.130 4.97 0.00 36.75 1.82
4303 4396 3.186119 CGTTGTGTTTGTTGCTCCAAAT 58.814 40.909 4.97 0.00 36.75 2.32
4304 4397 2.600731 CGTTGTGTTTGTTGCTCCAAA 58.399 42.857 0.00 0.00 32.12 3.28
4397 4490 9.835389 TTTGAATTTTCAGAATCAAGATTTGGT 57.165 25.926 0.00 0.00 38.61 3.67
4453 4546 9.807921 TGGAGAATTAATGGGAGGAAATTATAC 57.192 33.333 0.00 0.00 0.00 1.47
4459 4552 4.293634 TGGTGGAGAATTAATGGGAGGAAA 59.706 41.667 0.00 0.00 0.00 3.13
4495 4588 6.456795 AAGCTAATGTTTTAAGCCCTCATC 57.543 37.500 0.00 0.00 0.00 2.92
4496 4589 5.360999 GGAAGCTAATGTTTTAAGCCCTCAT 59.639 40.000 0.00 0.00 0.00 2.90
4497 4590 4.705023 GGAAGCTAATGTTTTAAGCCCTCA 59.295 41.667 0.00 0.00 0.00 3.86
4498 4591 4.950475 AGGAAGCTAATGTTTTAAGCCCTC 59.050 41.667 0.00 0.00 0.00 4.30
4499 4592 4.935578 AGGAAGCTAATGTTTTAAGCCCT 58.064 39.130 0.00 0.00 0.00 5.19
4500 4593 4.098044 GGAGGAAGCTAATGTTTTAAGCCC 59.902 45.833 0.00 0.00 0.00 5.19
4501 4594 4.098044 GGGAGGAAGCTAATGTTTTAAGCC 59.902 45.833 0.00 0.00 0.00 4.35
4502 4595 4.950475 AGGGAGGAAGCTAATGTTTTAAGC 59.050 41.667 0.00 0.00 0.00 3.09
4503 4596 5.590663 GGAGGGAGGAAGCTAATGTTTTAAG 59.409 44.000 0.00 0.00 0.00 1.85
4504 4597 5.506708 GGAGGGAGGAAGCTAATGTTTTAA 58.493 41.667 0.00 0.00 0.00 1.52
4505 4598 4.079958 GGGAGGGAGGAAGCTAATGTTTTA 60.080 45.833 0.00 0.00 0.00 1.52
4506 4599 3.309193 GGGAGGGAGGAAGCTAATGTTTT 60.309 47.826 0.00 0.00 0.00 2.43
4507 4600 2.242452 GGGAGGGAGGAAGCTAATGTTT 59.758 50.000 0.00 0.00 0.00 2.83
4508 4601 1.847088 GGGAGGGAGGAAGCTAATGTT 59.153 52.381 0.00 0.00 0.00 2.71
4509 4602 1.512735 GGGAGGGAGGAAGCTAATGT 58.487 55.000 0.00 0.00 0.00 2.71
4510 4603 0.767998 GGGGAGGGAGGAAGCTAATG 59.232 60.000 0.00 0.00 0.00 1.90
4511 4604 0.402126 GGGGGAGGGAGGAAGCTAAT 60.402 60.000 0.00 0.00 0.00 1.73
4512 4605 1.004361 GGGGGAGGGAGGAAGCTAA 59.996 63.158 0.00 0.00 0.00 3.09
4513 4606 1.947254 AGGGGGAGGGAGGAAGCTA 60.947 63.158 0.00 0.00 0.00 3.32
4514 4607 3.296737 AGGGGGAGGGAGGAAGCT 61.297 66.667 0.00 0.00 0.00 3.74
4515 4608 2.770475 GAGGGGGAGGGAGGAAGC 60.770 72.222 0.00 0.00 0.00 3.86
4516 4609 1.074850 GAGAGGGGGAGGGAGGAAG 60.075 68.421 0.00 0.00 0.00 3.46
4517 4610 1.238896 ATGAGAGGGGGAGGGAGGAA 61.239 60.000 0.00 0.00 0.00 3.36
4518 4611 1.238896 AATGAGAGGGGGAGGGAGGA 61.239 60.000 0.00 0.00 0.00 3.71
4519 4612 0.327964 AAATGAGAGGGGGAGGGAGG 60.328 60.000 0.00 0.00 0.00 4.30
4520 4613 1.213926 CAAAATGAGAGGGGGAGGGAG 59.786 57.143 0.00 0.00 0.00 4.30
4521 4614 1.298953 CAAAATGAGAGGGGGAGGGA 58.701 55.000 0.00 0.00 0.00 4.20
4522 4615 0.259938 CCAAAATGAGAGGGGGAGGG 59.740 60.000 0.00 0.00 0.00 4.30
4523 4616 0.259938 CCCAAAATGAGAGGGGGAGG 59.740 60.000 0.00 0.00 41.49 4.30
4524 4617 3.911719 CCCAAAATGAGAGGGGGAG 57.088 57.895 0.00 0.00 41.49 4.30
4529 4622 5.068987 TCAAAACTTGACCCAAAATGAGAGG 59.931 40.000 0.00 0.00 34.08 3.69
4530 4623 6.147864 TCAAAACTTGACCCAAAATGAGAG 57.852 37.500 0.00 0.00 34.08 3.20
4531 4624 6.071108 TGTTCAAAACTTGACCCAAAATGAGA 60.071 34.615 0.00 0.00 39.87 3.27
4532 4625 6.105333 TGTTCAAAACTTGACCCAAAATGAG 58.895 36.000 0.00 0.00 39.87 2.90
4533 4626 6.042638 TGTTCAAAACTTGACCCAAAATGA 57.957 33.333 0.00 0.00 39.87 2.57
4534 4627 6.923928 ATGTTCAAAACTTGACCCAAAATG 57.076 33.333 0.00 0.00 39.87 2.32
4535 4628 8.017418 TCTATGTTCAAAACTTGACCCAAAAT 57.983 30.769 0.00 0.00 39.87 1.82
4536 4629 7.411486 TCTATGTTCAAAACTTGACCCAAAA 57.589 32.000 0.00 0.00 39.87 2.44
4537 4630 7.595819 ATCTATGTTCAAAACTTGACCCAAA 57.404 32.000 0.00 0.00 39.87 3.28
4538 4631 7.595819 AATCTATGTTCAAAACTTGACCCAA 57.404 32.000 0.00 0.00 39.87 4.12
4539 4632 7.595819 AAATCTATGTTCAAAACTTGACCCA 57.404 32.000 0.00 0.00 39.87 4.51
4540 4633 8.793592 ACTAAATCTATGTTCAAAACTTGACCC 58.206 33.333 0.00 0.00 39.87 4.46
4598 4919 5.771165 TGTAGTGACATCTAATATACCCGCA 59.229 40.000 0.00 0.00 0.00 5.69
4702 5023 3.632604 TCCTCCTAGTATCTTGCGTCAAG 59.367 47.826 11.78 11.78 42.25 3.02
4735 5056 7.472334 ACCATTTAGTACTTCTTCCGTCTTA 57.528 36.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.