Multiple sequence alignment - TraesCS3A01G249500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G249500 chr3A 100.000 4415 0 0 1 4415 467880648 467876234 0.000000e+00 8154.0
1 TraesCS3A01G249500 chr3A 91.411 163 13 1 1 162 23211681 23211519 5.750000e-54 222.0
2 TraesCS3A01G249500 chr3A 93.077 130 9 0 3547 3676 210156757 210156886 1.620000e-44 191.0
3 TraesCS3A01G249500 chr3A 90.000 130 11 1 3545 3674 134231597 134231724 2.730000e-37 167.0
4 TraesCS3A01G249500 chr3A 89.394 132 14 0 3547 3678 154029620 154029489 2.730000e-37 167.0
5 TraesCS3A01G249500 chr3D 91.084 3163 134 44 339 3423 349644775 349641683 0.000000e+00 4143.0
6 TraesCS3A01G249500 chr3D 91.600 500 28 5 3930 4415 503748796 503748297 0.000000e+00 678.0
7 TraesCS3A01G249500 chr3D 87.751 498 47 1 3932 4415 191495809 191496306 1.780000e-158 569.0
8 TraesCS3A01G249500 chr3D 90.226 133 13 0 3545 3677 32145449 32145581 1.630000e-39 174.0
9 TraesCS3A01G249500 chr3D 84.868 152 22 1 185 335 511423540 511423691 7.650000e-33 152.0
10 TraesCS3A01G249500 chr3D 84.211 152 22 2 185 335 99875197 99875347 3.560000e-31 147.0
11 TraesCS3A01G249500 chr3D 98.113 53 0 1 3672 3724 349641539 349641488 1.690000e-14 91.6
12 TraesCS3A01G249500 chr3B 91.734 2226 109 37 1330 3521 448578849 448576665 0.000000e+00 3022.0
13 TraesCS3A01G249500 chr3B 85.558 824 55 21 347 1155 448579973 448579199 0.000000e+00 804.0
14 TraesCS3A01G249500 chr3B 93.458 214 12 2 3724 3936 448576484 448576272 2.560000e-82 316.0
15 TraesCS3A01G249500 chr2A 86.869 990 125 4 2256 3244 507388953 507389938 0.000000e+00 1103.0
16 TraesCS3A01G249500 chr2A 86.654 517 33 8 3933 4415 33695689 33695175 1.400000e-149 540.0
17 TraesCS3A01G249500 chr2D 86.249 989 133 2 2256 3244 375032186 375033171 0.000000e+00 1070.0
18 TraesCS3A01G249500 chr2D 89.600 500 38 2 3930 4415 592079525 592079026 1.350000e-174 623.0
19 TraesCS3A01G249500 chr2D 88.312 154 17 1 11 163 427554600 427554447 2.710000e-42 183.0
20 TraesCS3A01G249500 chr2D 89.051 137 15 0 3546 3682 136461729 136461865 2.110000e-38 171.0
21 TraesCS3A01G249500 chr2D 87.248 149 17 2 193 340 34536345 34536492 7.590000e-38 169.0
22 TraesCS3A01G249500 chr2B 86.249 989 133 2 2256 3244 445176461 445177446 0.000000e+00 1070.0
23 TraesCS3A01G249500 chr2B 93.293 164 10 1 2 164 396952044 396952207 1.590000e-59 241.0
24 TraesCS3A01G249500 chr5D 91.000 500 31 1 3930 4415 460227130 460226631 0.000000e+00 662.0
25 TraesCS3A01G249500 chr5D 85.526 152 21 1 185 335 105031405 105031556 1.640000e-34 158.0
26 TraesCS3A01G249500 chr5D 91.011 89 8 0 4326 4414 23727433 23727345 2.160000e-23 121.0
27 TraesCS3A01G249500 chr4D 88.690 504 42 2 3927 4415 260694568 260694065 6.320000e-168 601.0
28 TraesCS3A01G249500 chr4D 84.211 152 23 1 185 335 453261935 453262086 3.560000e-31 147.0
29 TraesCS3A01G249500 chr4D 91.304 92 8 0 4324 4415 120881236 120881327 4.640000e-25 126.0
30 TraesCS3A01G249500 chr7D 90.830 458 27 2 3972 4415 68912365 68912821 2.270000e-167 599.0
31 TraesCS3A01G249500 chr7D 96.250 160 5 1 4 162 13893508 13893667 1.220000e-65 261.0
32 TraesCS3A01G249500 chr7D 94.444 162 8 1 2 162 48274808 48274969 9.480000e-62 248.0
33 TraesCS3A01G249500 chr1D 87.424 493 53 7 3930 4415 3512993 3513483 3.860000e-155 558.0
34 TraesCS3A01G249500 chr1D 94.340 159 8 1 4 161 77848091 77848249 4.410000e-60 243.0
35 TraesCS3A01G249500 chr7A 87.347 490 38 13 3941 4415 684123598 684123118 1.400000e-149 540.0
36 TraesCS3A01G249500 chr7A 90.625 128 12 0 3547 3674 1734822 1734949 2.110000e-38 171.0
37 TraesCS3A01G249500 chr7B 90.566 371 35 0 3930 4300 694261533 694261903 3.970000e-135 492.0
38 TraesCS3A01G249500 chr7B 85.235 149 21 1 188 335 726752657 726752509 7.650000e-33 152.0
39 TraesCS3A01G249500 chr6A 93.780 209 13 0 3724 3932 106502401 106502193 9.220000e-82 315.0
40 TraesCS3A01G249500 chr6A 92.188 128 10 0 3547 3674 106974143 106974016 9.750000e-42 182.0
41 TraesCS3A01G249500 chr6B 91.250 160 13 1 4 162 279016860 279016701 2.670000e-52 217.0
42 TraesCS3A01G249500 chr6B 90.625 128 12 0 3547 3674 211702968 211702841 2.110000e-38 171.0
43 TraesCS3A01G249500 chr6B 86.111 144 19 1 193 335 41445193 41445336 2.130000e-33 154.0
44 TraesCS3A01G249500 chr5B 86.503 163 21 1 4 165 334284448 334284286 1.260000e-40 178.0
45 TraesCS3A01G249500 chr1B 89.844 128 13 0 3547 3674 106941319 106941446 9.820000e-37 165.0
46 TraesCS3A01G249500 chr1B 86.000 150 18 3 188 335 368671465 368671317 1.640000e-34 158.0
47 TraesCS3A01G249500 chr1B 81.169 154 26 3 11 162 555860520 555860368 2.160000e-23 121.0
48 TraesCS3A01G249500 chr6D 85.256 156 22 1 185 339 321122308 321122463 4.570000e-35 159.0
49 TraesCS3A01G249500 chr6D 94.186 86 1 1 1121 1206 356282701 356282782 1.290000e-25 128.0
50 TraesCS3A01G249500 chr6D 91.304 92 8 0 4324 4415 176484739 176484648 4.640000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G249500 chr3A 467876234 467880648 4414 True 8154.000000 8154 100.0000 1 4415 1 chr3A.!!$R3 4414
1 TraesCS3A01G249500 chr3D 349641488 349644775 3287 True 2117.300000 4143 94.5985 339 3724 2 chr3D.!!$R2 3385
2 TraesCS3A01G249500 chr3B 448576272 448579973 3701 True 1380.666667 3022 90.2500 347 3936 3 chr3B.!!$R1 3589
3 TraesCS3A01G249500 chr2A 507388953 507389938 985 False 1103.000000 1103 86.8690 2256 3244 1 chr2A.!!$F1 988
4 TraesCS3A01G249500 chr2A 33695175 33695689 514 True 540.000000 540 86.6540 3933 4415 1 chr2A.!!$R1 482
5 TraesCS3A01G249500 chr2D 375032186 375033171 985 False 1070.000000 1070 86.2490 2256 3244 1 chr2D.!!$F3 988
6 TraesCS3A01G249500 chr2B 445176461 445177446 985 False 1070.000000 1070 86.2490 2256 3244 1 chr2B.!!$F2 988
7 TraesCS3A01G249500 chr4D 260694065 260694568 503 True 601.000000 601 88.6900 3927 4415 1 chr4D.!!$R1 488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.027586 GGCGAACACATTGCCGTATC 59.972 55.0 0.00 0.0 39.30 2.24 F
875 887 0.251916 CCGGTGGAGCATAAGGTCAA 59.748 55.0 0.00 0.0 43.97 3.18 F
1359 1570 0.957395 AGTGGTCGCATTTGCTGGAG 60.957 55.0 0.51 0.0 39.32 3.86 F
2253 2555 1.315257 GCAGGTGATTGTGGCGGATT 61.315 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1196 0.250234 CAGAAGCAGGGAATGGACGA 59.750 55.000 0.0 0.0 0.0 4.20 R
1900 2144 0.550914 ACATGGTCAAGTGGTGTGGT 59.449 50.000 0.0 0.0 0.0 4.16 R
3260 3562 1.670083 AAGAAACCGTACCTGCCGC 60.670 57.895 0.0 0.0 0.0 6.53 R
4091 4525 0.036732 GTGCCCACAAGTCCAGATCA 59.963 55.000 0.0 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.645975 CACGGACGTGCCCACAAC 61.646 66.667 12.16 0.00 39.39 3.32
56 57 4.922026 ACGGACGTGCCCACAACC 62.922 66.667 0.00 0.84 0.00 3.77
57 58 4.920112 CGGACGTGCCCACAACCA 62.920 66.667 0.00 0.00 0.00 3.67
58 59 3.284449 GGACGTGCCCACAACCAC 61.284 66.667 0.00 0.00 0.00 4.16
59 60 3.284449 GACGTGCCCACAACCACC 61.284 66.667 0.00 0.00 0.00 4.61
61 62 4.920112 CGTGCCCACAACCACCGA 62.920 66.667 0.00 0.00 0.00 4.69
62 63 3.284449 GTGCCCACAACCACCGAC 61.284 66.667 0.00 0.00 0.00 4.79
63 64 3.484806 TGCCCACAACCACCGACT 61.485 61.111 0.00 0.00 0.00 4.18
64 65 2.668550 GCCCACAACCACCGACTC 60.669 66.667 0.00 0.00 0.00 3.36
65 66 2.032071 CCCACAACCACCGACTCC 59.968 66.667 0.00 0.00 0.00 3.85
66 67 2.357034 CCACAACCACCGACTCCG 60.357 66.667 0.00 0.00 0.00 4.63
104 105 4.796231 GTCGTCGGCACCGCTGAT 62.796 66.667 3.66 0.00 46.06 2.90
105 106 4.492160 TCGTCGGCACCGCTGATC 62.492 66.667 3.66 0.00 46.06 2.92
117 118 4.552365 CTGATCGGCGGCCATGGT 62.552 66.667 20.71 0.00 0.00 3.55
118 119 4.545706 TGATCGGCGGCCATGGTC 62.546 66.667 20.71 10.70 0.00 4.02
129 130 4.838152 CATGGTCGGCGTGGGGAG 62.838 72.222 6.85 0.00 0.00 4.30
133 134 3.827898 GTCGGCGTGGGGAGAGAG 61.828 72.222 6.85 0.00 0.00 3.20
134 135 4.043100 TCGGCGTGGGGAGAGAGA 62.043 66.667 6.85 0.00 0.00 3.10
135 136 3.522731 CGGCGTGGGGAGAGAGAG 61.523 72.222 0.00 0.00 0.00 3.20
136 137 2.043852 GGCGTGGGGAGAGAGAGA 60.044 66.667 0.00 0.00 0.00 3.10
137 138 2.124693 GGCGTGGGGAGAGAGAGAG 61.125 68.421 0.00 0.00 0.00 3.20
138 139 2.124693 GCGTGGGGAGAGAGAGAGG 61.125 68.421 0.00 0.00 0.00 3.69
139 140 1.610327 CGTGGGGAGAGAGAGAGGA 59.390 63.158 0.00 0.00 0.00 3.71
140 141 0.184933 CGTGGGGAGAGAGAGAGGAT 59.815 60.000 0.00 0.00 0.00 3.24
141 142 1.422024 CGTGGGGAGAGAGAGAGGATA 59.578 57.143 0.00 0.00 0.00 2.59
142 143 2.552155 CGTGGGGAGAGAGAGAGGATAG 60.552 59.091 0.00 0.00 0.00 2.08
143 144 2.069775 TGGGGAGAGAGAGAGGATAGG 58.930 57.143 0.00 0.00 0.00 2.57
144 145 1.357761 GGGGAGAGAGAGAGGATAGGG 59.642 61.905 0.00 0.00 0.00 3.53
145 146 2.354328 GGGAGAGAGAGAGGATAGGGA 58.646 57.143 0.00 0.00 0.00 4.20
146 147 2.041216 GGGAGAGAGAGAGGATAGGGAC 59.959 59.091 0.00 0.00 0.00 4.46
147 148 2.290071 GGAGAGAGAGAGGATAGGGACG 60.290 59.091 0.00 0.00 0.00 4.79
148 149 2.370849 GAGAGAGAGAGGATAGGGACGT 59.629 54.545 0.00 0.00 0.00 4.34
149 150 2.370849 AGAGAGAGAGGATAGGGACGTC 59.629 54.545 7.13 7.13 0.00 4.34
150 151 2.105134 GAGAGAGAGGATAGGGACGTCA 59.895 54.545 18.91 0.00 0.00 4.35
151 152 2.105821 AGAGAGAGGATAGGGACGTCAG 59.894 54.545 18.91 0.00 0.00 3.51
152 153 2.105134 GAGAGAGGATAGGGACGTCAGA 59.895 54.545 18.91 1.43 0.00 3.27
153 154 2.510382 AGAGAGGATAGGGACGTCAGAA 59.490 50.000 18.91 1.31 0.00 3.02
154 155 3.053544 AGAGAGGATAGGGACGTCAGAAA 60.054 47.826 18.91 0.00 0.00 2.52
155 156 3.700038 GAGAGGATAGGGACGTCAGAAAA 59.300 47.826 18.91 0.00 0.00 2.29
156 157 3.702045 AGAGGATAGGGACGTCAGAAAAG 59.298 47.826 18.91 0.00 0.00 2.27
157 158 2.168728 AGGATAGGGACGTCAGAAAAGC 59.831 50.000 18.91 0.16 0.00 3.51
158 159 2.552031 GATAGGGACGTCAGAAAAGCC 58.448 52.381 18.91 7.28 0.00 4.35
159 160 1.344065 TAGGGACGTCAGAAAAGCCA 58.656 50.000 18.91 0.00 0.00 4.75
160 161 0.693049 AGGGACGTCAGAAAAGCCAT 59.307 50.000 18.91 0.00 0.00 4.40
161 162 1.087501 GGGACGTCAGAAAAGCCATC 58.912 55.000 18.91 0.00 0.00 3.51
162 163 1.087501 GGACGTCAGAAAAGCCATCC 58.912 55.000 18.91 0.00 0.00 3.51
163 164 1.339151 GGACGTCAGAAAAGCCATCCT 60.339 52.381 18.91 0.00 0.00 3.24
164 165 2.427506 GACGTCAGAAAAGCCATCCTT 58.572 47.619 11.55 0.00 34.51 3.36
165 166 2.814336 GACGTCAGAAAAGCCATCCTTT 59.186 45.455 11.55 0.00 45.49 3.11
166 167 2.554032 ACGTCAGAAAAGCCATCCTTTG 59.446 45.455 0.00 0.00 42.82 2.77
167 168 2.669391 CGTCAGAAAAGCCATCCTTTGC 60.669 50.000 0.00 0.00 42.82 3.68
169 170 2.821969 TCAGAAAAGCCATCCTTTGCTC 59.178 45.455 0.00 0.00 44.60 4.26
170 171 1.815003 AGAAAAGCCATCCTTTGCTCG 59.185 47.619 0.00 0.00 44.60 5.03
171 172 1.812571 GAAAAGCCATCCTTTGCTCGA 59.187 47.619 0.00 0.00 42.82 4.04
172 173 1.909700 AAAGCCATCCTTTGCTCGAA 58.090 45.000 0.00 0.00 42.07 3.71
173 174 1.168714 AAGCCATCCTTTGCTCGAAC 58.831 50.000 0.00 0.00 36.66 3.95
174 175 0.678048 AGCCATCCTTTGCTCGAACC 60.678 55.000 0.00 0.00 30.33 3.62
175 176 0.678048 GCCATCCTTTGCTCGAACCT 60.678 55.000 0.00 0.00 0.00 3.50
176 177 1.373570 CCATCCTTTGCTCGAACCTC 58.626 55.000 0.00 0.00 0.00 3.85
177 178 1.065854 CCATCCTTTGCTCGAACCTCT 60.066 52.381 0.00 0.00 0.00 3.69
178 179 2.168521 CCATCCTTTGCTCGAACCTCTA 59.831 50.000 0.00 0.00 0.00 2.43
179 180 3.190874 CATCCTTTGCTCGAACCTCTAC 58.809 50.000 0.00 0.00 0.00 2.59
180 181 1.549170 TCCTTTGCTCGAACCTCTACC 59.451 52.381 0.00 0.00 0.00 3.18
181 182 1.630148 CTTTGCTCGAACCTCTACCG 58.370 55.000 0.00 0.00 0.00 4.02
182 183 1.201647 CTTTGCTCGAACCTCTACCGA 59.798 52.381 0.00 0.00 0.00 4.69
183 184 1.471119 TTGCTCGAACCTCTACCGAT 58.529 50.000 0.00 0.00 0.00 4.18
184 185 1.022735 TGCTCGAACCTCTACCGATC 58.977 55.000 0.00 0.00 0.00 3.69
185 186 1.022735 GCTCGAACCTCTACCGATCA 58.977 55.000 0.00 0.00 0.00 2.92
186 187 1.609555 GCTCGAACCTCTACCGATCAT 59.390 52.381 0.00 0.00 0.00 2.45
187 188 2.350964 GCTCGAACCTCTACCGATCATC 60.351 54.545 0.00 0.00 0.00 2.92
188 189 2.226912 CTCGAACCTCTACCGATCATCC 59.773 54.545 0.00 0.00 0.00 3.51
189 190 1.269998 CGAACCTCTACCGATCATCCC 59.730 57.143 0.00 0.00 0.00 3.85
190 191 1.269998 GAACCTCTACCGATCATCCCG 59.730 57.143 0.00 0.00 0.00 5.14
191 192 0.477204 ACCTCTACCGATCATCCCGA 59.523 55.000 0.00 0.00 0.00 5.14
192 193 1.133575 ACCTCTACCGATCATCCCGAA 60.134 52.381 0.00 0.00 0.00 4.30
193 194 1.269998 CCTCTACCGATCATCCCGAAC 59.730 57.143 0.00 0.00 0.00 3.95
194 195 1.954382 CTCTACCGATCATCCCGAACA 59.046 52.381 0.00 0.00 0.00 3.18
195 196 2.558795 CTCTACCGATCATCCCGAACAT 59.441 50.000 0.00 0.00 0.00 2.71
196 197 2.296190 TCTACCGATCATCCCGAACATG 59.704 50.000 0.00 0.00 0.00 3.21
197 198 1.119684 ACCGATCATCCCGAACATGA 58.880 50.000 0.00 0.00 34.74 3.07
198 199 1.694150 ACCGATCATCCCGAACATGAT 59.306 47.619 0.00 4.05 42.57 2.45
199 200 2.104792 ACCGATCATCCCGAACATGATT 59.895 45.455 0.00 0.00 40.43 2.57
200 201 3.141398 CCGATCATCCCGAACATGATTT 58.859 45.455 0.00 0.00 40.43 2.17
201 202 3.058708 CCGATCATCCCGAACATGATTTG 60.059 47.826 0.00 0.00 40.43 2.32
202 203 3.058708 CGATCATCCCGAACATGATTTGG 60.059 47.826 0.00 3.57 40.43 3.28
203 204 2.653726 TCATCCCGAACATGATTTGGG 58.346 47.619 19.74 19.74 41.43 4.12
206 207 2.653726 TCCCGAACATGATTTGGGATG 58.346 47.619 22.48 7.08 43.85 3.51
207 208 1.067516 CCCGAACATGATTTGGGATGC 59.932 52.381 20.59 0.00 42.77 3.91
208 209 1.268692 CCGAACATGATTTGGGATGCG 60.269 52.381 0.00 0.00 0.00 4.73
209 210 1.268692 CGAACATGATTTGGGATGCGG 60.269 52.381 0.00 0.00 0.00 5.69
210 211 0.461135 AACATGATTTGGGATGCGGC 59.539 50.000 0.00 0.00 0.00 6.53
211 212 1.364901 CATGATTTGGGATGCGGCC 59.635 57.895 0.00 0.00 0.00 6.13
212 213 2.195567 ATGATTTGGGATGCGGCCG 61.196 57.895 24.05 24.05 0.00 6.13
213 214 4.270376 GATTTGGGATGCGGCCGC 62.270 66.667 42.35 42.35 42.35 6.53
238 239 2.824041 GCGCACCCACGATCCAAT 60.824 61.111 0.30 0.00 34.06 3.16
239 240 3.101209 CGCACCCACGATCCAATG 58.899 61.111 0.00 0.00 34.06 2.82
240 241 2.472059 CGCACCCACGATCCAATGG 61.472 63.158 0.00 0.00 35.59 3.16
241 242 1.077787 GCACCCACGATCCAATGGA 60.078 57.895 3.67 3.67 38.34 3.41
242 243 0.466189 GCACCCACGATCCAATGGAT 60.466 55.000 15.71 15.71 46.28 3.41
243 244 1.202758 GCACCCACGATCCAATGGATA 60.203 52.381 15.75 0.00 43.27 2.59
244 245 2.771089 CACCCACGATCCAATGGATAG 58.229 52.381 15.75 17.48 43.27 2.08
245 246 2.368548 CACCCACGATCCAATGGATAGA 59.631 50.000 25.60 0.00 43.27 1.98
246 247 3.045634 ACCCACGATCCAATGGATAGAA 58.954 45.455 25.60 0.00 43.27 2.10
247 248 3.071602 ACCCACGATCCAATGGATAGAAG 59.928 47.826 25.60 17.23 43.27 2.85
248 249 3.070018 CCACGATCCAATGGATAGAAGC 58.930 50.000 25.60 8.39 43.27 3.86
249 250 2.733552 CACGATCCAATGGATAGAAGCG 59.266 50.000 25.60 20.43 43.27 4.68
250 251 2.289072 ACGATCCAATGGATAGAAGCGG 60.289 50.000 25.60 8.27 43.27 5.52
251 252 2.029020 CGATCCAATGGATAGAAGCGGA 60.029 50.000 15.75 0.00 43.27 5.54
252 253 2.910688 TCCAATGGATAGAAGCGGAC 57.089 50.000 0.00 0.00 0.00 4.79
253 254 2.115427 TCCAATGGATAGAAGCGGACA 58.885 47.619 0.00 0.00 0.00 4.02
254 255 2.705658 TCCAATGGATAGAAGCGGACAT 59.294 45.455 0.00 0.00 0.00 3.06
255 256 2.810274 CCAATGGATAGAAGCGGACATG 59.190 50.000 0.00 0.00 0.00 3.21
256 257 2.810274 CAATGGATAGAAGCGGACATGG 59.190 50.000 0.00 0.00 0.00 3.66
257 258 0.758734 TGGATAGAAGCGGACATGGG 59.241 55.000 0.00 0.00 0.00 4.00
258 259 0.603975 GGATAGAAGCGGACATGGGC 60.604 60.000 0.00 0.00 0.00 5.36
259 260 0.946221 GATAGAAGCGGACATGGGCG 60.946 60.000 0.00 0.00 0.00 6.13
260 261 1.399744 ATAGAAGCGGACATGGGCGA 61.400 55.000 0.00 0.00 0.00 5.54
261 262 1.609635 TAGAAGCGGACATGGGCGAA 61.610 55.000 0.00 0.00 0.00 4.70
262 263 2.746277 AAGCGGACATGGGCGAAC 60.746 61.111 0.00 0.00 0.00 3.95
263 264 3.545124 AAGCGGACATGGGCGAACA 62.545 57.895 0.00 0.00 0.00 3.18
264 265 3.799755 GCGGACATGGGCGAACAC 61.800 66.667 0.00 0.00 0.00 3.32
265 266 2.358125 CGGACATGGGCGAACACA 60.358 61.111 0.00 0.00 0.00 3.72
266 267 1.745115 CGGACATGGGCGAACACAT 60.745 57.895 0.00 0.00 0.00 3.21
267 268 1.305219 CGGACATGGGCGAACACATT 61.305 55.000 0.00 0.00 0.00 2.71
268 269 0.171007 GGACATGGGCGAACACATTG 59.829 55.000 0.00 0.00 0.00 2.82
269 270 0.456653 GACATGGGCGAACACATTGC 60.457 55.000 0.00 0.00 0.00 3.56
273 274 3.568686 GGCGAACACATTGCCGTA 58.431 55.556 0.00 0.00 39.30 4.02
274 275 2.094904 GGCGAACACATTGCCGTAT 58.905 52.632 0.00 0.00 39.30 3.06
275 276 0.027586 GGCGAACACATTGCCGTATC 59.972 55.000 0.00 0.00 39.30 2.24
276 277 0.724549 GCGAACACATTGCCGTATCA 59.275 50.000 0.00 0.00 0.00 2.15
277 278 1.129624 GCGAACACATTGCCGTATCAA 59.870 47.619 0.00 0.00 0.00 2.57
278 279 2.413502 GCGAACACATTGCCGTATCAAA 60.414 45.455 0.00 0.00 0.00 2.69
279 280 3.160545 CGAACACATTGCCGTATCAAAC 58.839 45.455 0.00 0.00 0.00 2.93
293 294 5.127371 GTATCAAACGGACGAAATCTGAC 57.873 43.478 0.00 0.00 37.13 3.51
294 295 3.380479 TCAAACGGACGAAATCTGACT 57.620 42.857 0.00 0.00 37.13 3.41
295 296 4.508461 TCAAACGGACGAAATCTGACTA 57.492 40.909 0.00 0.00 37.13 2.59
296 297 4.873817 TCAAACGGACGAAATCTGACTAA 58.126 39.130 0.00 0.00 37.13 2.24
297 298 5.291178 TCAAACGGACGAAATCTGACTAAA 58.709 37.500 0.00 0.00 37.13 1.85
298 299 5.176223 TCAAACGGACGAAATCTGACTAAAC 59.824 40.000 0.00 0.00 37.13 2.01
299 300 3.582780 ACGGACGAAATCTGACTAAACC 58.417 45.455 0.00 0.00 37.13 3.27
300 301 2.597305 CGGACGAAATCTGACTAAACCG 59.403 50.000 0.00 0.00 35.44 4.44
301 302 2.928116 GGACGAAATCTGACTAAACCGG 59.072 50.000 0.00 0.00 0.00 5.28
302 303 3.367703 GGACGAAATCTGACTAAACCGGA 60.368 47.826 9.46 0.00 0.00 5.14
303 304 3.582780 ACGAAATCTGACTAAACCGGAC 58.417 45.455 9.46 0.00 0.00 4.79
304 305 2.597305 CGAAATCTGACTAAACCGGACG 59.403 50.000 9.46 0.00 0.00 4.79
305 306 3.582780 GAAATCTGACTAAACCGGACGT 58.417 45.455 9.46 0.00 0.00 4.34
306 307 2.935481 ATCTGACTAAACCGGACGTC 57.065 50.000 9.46 7.13 0.00 4.34
307 308 0.883833 TCTGACTAAACCGGACGTCC 59.116 55.000 25.28 25.28 0.00 4.79
317 318 3.838468 GGACGTCCGTTTGAGTCG 58.162 61.111 20.85 0.00 34.68 4.18
318 319 1.008079 GGACGTCCGTTTGAGTCGT 60.008 57.895 20.85 0.00 37.45 4.34
319 320 1.273455 GGACGTCCGTTTGAGTCGTG 61.273 60.000 20.85 0.00 34.93 4.35
320 321 0.593263 GACGTCCGTTTGAGTCGTGT 60.593 55.000 3.51 0.00 34.93 4.49
321 322 0.662619 ACGTCCGTTTGAGTCGTGTA 59.337 50.000 0.00 0.00 33.55 2.90
322 323 1.324718 CGTCCGTTTGAGTCGTGTAG 58.675 55.000 0.00 0.00 0.00 2.74
323 324 1.334419 CGTCCGTTTGAGTCGTGTAGT 60.334 52.381 0.00 0.00 0.00 2.73
324 325 2.049228 GTCCGTTTGAGTCGTGTAGTG 58.951 52.381 0.00 0.00 0.00 2.74
325 326 1.001048 TCCGTTTGAGTCGTGTAGTGG 60.001 52.381 0.00 0.00 0.00 4.00
326 327 1.001048 CCGTTTGAGTCGTGTAGTGGA 60.001 52.381 0.00 0.00 0.00 4.02
327 328 2.316792 CGTTTGAGTCGTGTAGTGGAG 58.683 52.381 0.00 0.00 0.00 3.86
328 329 2.287427 CGTTTGAGTCGTGTAGTGGAGT 60.287 50.000 0.00 0.00 0.00 3.85
329 330 3.714391 GTTTGAGTCGTGTAGTGGAGTT 58.286 45.455 0.00 0.00 0.00 3.01
330 331 3.364889 TTGAGTCGTGTAGTGGAGTTG 57.635 47.619 0.00 0.00 0.00 3.16
331 332 1.611977 TGAGTCGTGTAGTGGAGTTGG 59.388 52.381 0.00 0.00 0.00 3.77
332 333 0.317479 AGTCGTGTAGTGGAGTTGGC 59.683 55.000 0.00 0.00 0.00 4.52
333 334 0.669625 GTCGTGTAGTGGAGTTGGCC 60.670 60.000 0.00 0.00 0.00 5.36
334 335 0.830444 TCGTGTAGTGGAGTTGGCCT 60.830 55.000 3.32 0.00 0.00 5.19
335 336 0.670546 CGTGTAGTGGAGTTGGCCTG 60.671 60.000 3.32 0.00 0.00 4.85
336 337 0.685097 GTGTAGTGGAGTTGGCCTGA 59.315 55.000 3.32 0.00 0.00 3.86
337 338 1.071699 GTGTAGTGGAGTTGGCCTGAA 59.928 52.381 3.32 0.00 0.00 3.02
345 346 2.357569 GGAGTTGGCCTGAATGAAGGAT 60.358 50.000 3.32 0.00 40.02 3.24
351 352 1.674962 GCCTGAATGAAGGATGCTCAC 59.325 52.381 0.00 0.00 40.02 3.51
358 359 1.005340 GAAGGATGCTCACTTGCTCG 58.995 55.000 0.00 0.00 0.00 5.03
363 364 1.572085 ATGCTCACTTGCTCGCACAC 61.572 55.000 0.00 0.00 34.93 3.82
364 365 2.849007 CTCACTTGCTCGCACACG 59.151 61.111 0.00 0.00 42.01 4.49
368 369 2.244651 ACTTGCTCGCACACGTTCC 61.245 57.895 0.00 0.00 41.18 3.62
372 373 3.414700 CTCGCACACGTTCCTGGC 61.415 66.667 0.00 0.00 41.18 4.85
490 491 1.244816 TGGGACAGACAGTACGTGAG 58.755 55.000 0.00 0.00 0.00 3.51
712 719 2.072298 CACCTGCTAGCTTCTCAACAC 58.928 52.381 17.23 0.00 0.00 3.32
730 737 3.633116 TGCAGCAGAGCAGCCTGA 61.633 61.111 13.41 0.00 40.32 3.86
731 738 2.820479 GCAGCAGAGCAGCCTGAG 60.820 66.667 13.41 7.07 35.03 3.35
856 868 2.511600 AAGCACAGATACGGCGGC 60.512 61.111 13.24 0.00 0.00 6.53
875 887 0.251916 CCGGTGGAGCATAAGGTCAA 59.748 55.000 0.00 0.00 43.97 3.18
888 900 2.110213 GTCAACACACCTGGCCGA 59.890 61.111 0.00 0.00 0.00 5.54
1042 1054 2.705821 CCGTCGAGAGCAGCTTCCT 61.706 63.158 0.00 0.00 0.00 3.36
1049 1061 1.743252 GAGCAGCTTCCTCCGTTGG 60.743 63.158 0.00 0.00 0.00 3.77
1136 1150 1.296727 GCTGCGAACCCCAGTATAAC 58.703 55.000 0.00 0.00 32.93 1.89
1151 1165 5.250200 CAGTATAACCCGAGCTCTAGAGAT 58.750 45.833 24.24 18.22 0.00 2.75
1162 1176 4.549458 AGCTCTAGAGATCTCGTACGTAC 58.451 47.826 24.24 15.90 34.09 3.67
1163 1177 6.616286 GAGCTCTAGAGATCTCGTACGTACG 61.616 52.000 35.90 35.90 41.21 3.67
1182 1196 3.411351 GCGCGTCGTCACAATGGT 61.411 61.111 8.43 0.00 0.00 3.55
1258 1425 6.490040 GCTCCTATATTTATTTTCCCTGTGCA 59.510 38.462 0.00 0.00 0.00 4.57
1286 1453 7.702348 GCAAAGAGCATTTTACTATTACAAGGG 59.298 37.037 0.00 0.00 44.79 3.95
1287 1454 6.944234 AGAGCATTTTACTATTACAAGGGC 57.056 37.500 0.00 0.00 0.00 5.19
1327 1501 3.455990 TGCAAGTCGTTAGTACCAACA 57.544 42.857 5.04 0.00 0.00 3.33
1328 1502 3.386486 TGCAAGTCGTTAGTACCAACAG 58.614 45.455 5.04 0.00 0.00 3.16
1329 1503 3.181473 TGCAAGTCGTTAGTACCAACAGT 60.181 43.478 5.04 0.00 0.00 3.55
1330 1504 4.037803 TGCAAGTCGTTAGTACCAACAGTA 59.962 41.667 5.04 0.00 0.00 2.74
1346 1557 5.869888 CCAACAGTACTTCTGATAAGTGGTC 59.130 44.000 0.00 0.00 46.27 4.02
1359 1570 0.957395 AGTGGTCGCATTTGCTGGAG 60.957 55.000 0.51 0.00 39.32 3.86
1417 1628 7.290014 TGAGATTAAGCATATCTAGGTGTTGGA 59.710 37.037 0.00 0.00 32.64 3.53
1430 1641 2.303175 GTGTTGGAGGTTTTGGCTACA 58.697 47.619 0.00 0.00 0.00 2.74
1517 1733 2.729491 GGCTGCGGCGACAAAAAC 60.729 61.111 12.98 0.00 39.81 2.43
1557 1793 3.303495 ACGCTGAGATTTGTTATTCGACG 59.697 43.478 0.00 0.00 0.00 5.12
1600 1836 5.929697 TTCACTCACTCTTTACAAGCATG 57.070 39.130 0.00 0.00 0.00 4.06
1601 1837 3.748048 TCACTCACTCTTTACAAGCATGC 59.252 43.478 10.51 10.51 0.00 4.06
1602 1838 3.750130 CACTCACTCTTTACAAGCATGCT 59.250 43.478 16.30 16.30 0.00 3.79
1603 1839 3.750130 ACTCACTCTTTACAAGCATGCTG 59.250 43.478 23.48 17.40 0.00 4.41
1679 1915 2.593134 GCGCATCTGACGATCTGGC 61.593 63.158 0.30 0.00 0.00 4.85
1742 1978 6.364568 AAGGCTGCCTTTTATCATTTTCTT 57.635 33.333 27.70 0.60 41.69 2.52
1743 1979 7.480760 AAGGCTGCCTTTTATCATTTTCTTA 57.519 32.000 27.70 0.00 41.69 2.10
1775 2016 6.966632 CGCAGTCTGCAGCTAATTAAATTTAA 59.033 34.615 24.13 12.85 45.36 1.52
1824 2065 1.697982 AGTAAAGGGTTCGCCACTTCT 59.302 47.619 0.00 0.00 39.65 2.85
1896 2140 6.317140 GGTACTGTATTAGTTTTTGGTAGGGC 59.683 42.308 0.00 0.00 40.89 5.19
1900 2144 6.544650 TGTATTAGTTTTTGGTAGGGCTCAA 58.455 36.000 0.00 0.00 0.00 3.02
1941 2185 3.181440 TGGTCCAGTGAAATCTTGCTTCT 60.181 43.478 0.00 0.00 0.00 2.85
1942 2186 3.438434 GGTCCAGTGAAATCTTGCTTCTC 59.562 47.826 0.00 0.00 0.00 2.87
1943 2187 4.322567 GTCCAGTGAAATCTTGCTTCTCT 58.677 43.478 0.00 0.00 0.00 3.10
1944 2188 4.759183 GTCCAGTGAAATCTTGCTTCTCTT 59.241 41.667 0.00 0.00 0.00 2.85
1945 2189 4.999950 TCCAGTGAAATCTTGCTTCTCTTC 59.000 41.667 0.00 0.00 0.00 2.87
1991 2235 6.638873 CGATCTCCATCTGAATGTAACTGTAC 59.361 42.308 0.00 0.00 0.00 2.90
2060 2304 1.753930 CCTTGCACTGATGGCATACA 58.246 50.000 0.00 0.00 41.58 2.29
2094 2392 5.867716 GGTAACTGACACACTGATAAATCGT 59.132 40.000 0.00 0.00 0.00 3.73
2198 2500 2.538449 CGCCGTGTATGTAGAAATGACC 59.462 50.000 0.00 0.00 0.00 4.02
2203 2505 5.041287 CGTGTATGTAGAAATGACCGATGT 58.959 41.667 0.00 0.00 0.00 3.06
2219 2521 2.990514 CGATGTATGACACGGAACAACA 59.009 45.455 0.00 0.00 0.00 3.33
2253 2555 1.315257 GCAGGTGATTGTGGCGGATT 61.315 55.000 0.00 0.00 0.00 3.01
3048 3350 2.363276 ACGCCGGGACCTACATCA 60.363 61.111 2.18 0.00 0.00 3.07
3283 3585 2.161609 GGCAGGTACGGTTTCTTGATTG 59.838 50.000 0.00 0.00 0.00 2.67
3387 3695 3.721035 TGTGATTCTACTCATCGCCATG 58.279 45.455 0.00 0.00 31.22 3.66
3438 3746 7.039011 TGACAGTATCCATCAACTACTGAGTTT 60.039 37.037 14.06 0.00 43.70 2.66
3439 3747 7.324178 ACAGTATCCATCAACTACTGAGTTTC 58.676 38.462 14.06 0.00 43.70 2.78
3443 3751 6.611613 TCCATCAACTACTGAGTTTCTGAT 57.388 37.500 0.00 0.00 43.70 2.90
3462 3770 0.991355 TGGTGAAGGGTGAAGGGTGT 60.991 55.000 0.00 0.00 0.00 4.16
3463 3771 0.250770 GGTGAAGGGTGAAGGGTGTC 60.251 60.000 0.00 0.00 0.00 3.67
3492 3800 2.008329 GATTGAACAGAGCTGAGCCAG 58.992 52.381 0.00 0.00 34.12 4.85
3501 3809 1.818785 GCTGAGCCAGAGTGCATCC 60.819 63.158 6.40 0.00 32.44 3.51
3521 3829 3.967326 TCCACTCCTTGAAAGAAGACAGA 59.033 43.478 0.00 0.00 0.00 3.41
3526 3836 5.994668 ACTCCTTGAAAGAAGACAGAATGAC 59.005 40.000 0.00 0.00 39.69 3.06
3531 3899 2.350863 AGAAGACAGAATGACCCCCT 57.649 50.000 0.00 0.00 39.69 4.79
3551 3919 4.570930 CCTCTCTTTTTGAGGTGTACTCC 58.429 47.826 5.81 5.81 46.01 3.85
3552 3920 4.284746 CCTCTCTTTTTGAGGTGTACTCCT 59.715 45.833 16.29 16.29 46.01 3.69
3553 3921 5.221742 CCTCTCTTTTTGAGGTGTACTCCTT 60.222 44.000 17.30 2.14 46.01 3.36
3554 3922 5.855045 TCTCTTTTTGAGGTGTACTCCTTC 58.145 41.667 17.30 11.06 46.01 3.46
3555 3923 4.969484 TCTTTTTGAGGTGTACTCCTTCC 58.031 43.478 17.30 6.81 46.01 3.46
3556 3924 3.396260 TTTTGAGGTGTACTCCTTCCG 57.604 47.619 17.30 0.00 46.01 4.30
3557 3925 2.005370 TTGAGGTGTACTCCTTCCGT 57.995 50.000 17.30 0.00 46.01 4.69
3558 3926 2.005370 TGAGGTGTACTCCTTCCGTT 57.995 50.000 17.30 0.00 46.01 4.44
3559 3927 1.891150 TGAGGTGTACTCCTTCCGTTC 59.109 52.381 17.30 5.02 46.01 3.95
3560 3928 1.204231 GAGGTGTACTCCTTCCGTTCC 59.796 57.143 17.30 0.00 40.49 3.62
3561 3929 0.971386 GGTGTACTCCTTCCGTTCCA 59.029 55.000 6.72 0.00 0.00 3.53
3562 3930 1.337541 GGTGTACTCCTTCCGTTCCAC 60.338 57.143 6.72 0.00 0.00 4.02
3563 3931 1.342174 GTGTACTCCTTCCGTTCCACA 59.658 52.381 0.00 0.00 0.00 4.17
3564 3932 2.040939 TGTACTCCTTCCGTTCCACAA 58.959 47.619 0.00 0.00 0.00 3.33
3565 3933 2.635915 TGTACTCCTTCCGTTCCACAAT 59.364 45.455 0.00 0.00 0.00 2.71
3566 3934 3.833650 TGTACTCCTTCCGTTCCACAATA 59.166 43.478 0.00 0.00 0.00 1.90
3567 3935 3.329929 ACTCCTTCCGTTCCACAATAC 57.670 47.619 0.00 0.00 0.00 1.89
3568 3936 2.635915 ACTCCTTCCGTTCCACAATACA 59.364 45.455 0.00 0.00 0.00 2.29
3569 3937 3.263425 ACTCCTTCCGTTCCACAATACAT 59.737 43.478 0.00 0.00 0.00 2.29
3570 3938 4.468510 ACTCCTTCCGTTCCACAATACATA 59.531 41.667 0.00 0.00 0.00 2.29
3571 3939 4.761975 TCCTTCCGTTCCACAATACATAC 58.238 43.478 0.00 0.00 0.00 2.39
3572 3940 3.875134 CCTTCCGTTCCACAATACATACC 59.125 47.826 0.00 0.00 0.00 2.73
3573 3941 4.383770 CCTTCCGTTCCACAATACATACCT 60.384 45.833 0.00 0.00 0.00 3.08
3574 3942 4.829872 TCCGTTCCACAATACATACCTT 57.170 40.909 0.00 0.00 0.00 3.50
3575 3943 4.761975 TCCGTTCCACAATACATACCTTC 58.238 43.478 0.00 0.00 0.00 3.46
3576 3944 3.875134 CCGTTCCACAATACATACCTTCC 59.125 47.826 0.00 0.00 0.00 3.46
3577 3945 4.509616 CGTTCCACAATACATACCTTCCA 58.490 43.478 0.00 0.00 0.00 3.53
3578 3946 5.123227 CGTTCCACAATACATACCTTCCAT 58.877 41.667 0.00 0.00 0.00 3.41
3579 3947 5.588648 CGTTCCACAATACATACCTTCCATT 59.411 40.000 0.00 0.00 0.00 3.16
3580 3948 6.094881 CGTTCCACAATACATACCTTCCATTT 59.905 38.462 0.00 0.00 0.00 2.32
3581 3949 7.281324 CGTTCCACAATACATACCTTCCATTTA 59.719 37.037 0.00 0.00 0.00 1.40
3582 3950 9.131791 GTTCCACAATACATACCTTCCATTTAT 57.868 33.333 0.00 0.00 0.00 1.40
3583 3951 8.918202 TCCACAATACATACCTTCCATTTATC 57.082 34.615 0.00 0.00 0.00 1.75
3584 3952 8.498575 TCCACAATACATACCTTCCATTTATCA 58.501 33.333 0.00 0.00 0.00 2.15
3585 3953 9.130661 CCACAATACATACCTTCCATTTATCAA 57.869 33.333 0.00 0.00 0.00 2.57
3660 4028 9.311916 TGAACAAATGAAAGTCAAGTATTTTGG 57.688 29.630 0.00 0.00 30.08 3.28
3661 4029 9.528018 GAACAAATGAAAGTCAAGTATTTTGGA 57.472 29.630 0.00 0.00 30.08 3.53
3662 4030 9.883142 AACAAATGAAAGTCAAGTATTTTGGAA 57.117 25.926 0.00 0.00 30.08 3.53
3663 4031 9.313118 ACAAATGAAAGTCAAGTATTTTGGAAC 57.687 29.630 0.00 0.00 30.08 3.62
3664 4032 8.479280 CAAATGAAAGTCAAGTATTTTGGAACG 58.521 33.333 0.00 0.00 0.00 3.95
3665 4033 6.928979 TGAAAGTCAAGTATTTTGGAACGA 57.071 33.333 0.00 0.00 0.00 3.85
3666 4034 7.323049 TGAAAGTCAAGTATTTTGGAACGAA 57.677 32.000 0.00 0.00 0.00 3.85
3667 4035 7.414436 TGAAAGTCAAGTATTTTGGAACGAAG 58.586 34.615 0.00 0.00 0.00 3.79
3668 4036 5.941948 AGTCAAGTATTTTGGAACGAAGG 57.058 39.130 0.00 0.00 0.00 3.46
3669 4037 4.760204 AGTCAAGTATTTTGGAACGAAGGG 59.240 41.667 0.00 0.00 0.00 3.95
3670 4038 4.758165 GTCAAGTATTTTGGAACGAAGGGA 59.242 41.667 0.00 0.00 0.00 4.20
3689 4057 7.010552 CGAAGGGAGTAGAACTGATGTATTTTG 59.989 40.741 0.00 0.00 0.00 2.44
3727 4140 2.975811 CCATCCGGATGTGCTCTAGCA 61.976 57.143 36.09 0.00 41.22 3.49
3744 4157 0.796927 GCACTAACCGAAGCTTGGAC 59.203 55.000 18.22 0.00 0.00 4.02
3759 4172 3.403038 CTTGGACGTCATTTGTCTCCTT 58.597 45.455 18.91 0.00 36.58 3.36
3764 4177 4.455877 GGACGTCATTTGTCTCCTTCATTT 59.544 41.667 18.91 0.00 36.58 2.32
3766 4179 6.316390 GGACGTCATTTGTCTCCTTCATTTAT 59.684 38.462 18.91 0.00 36.58 1.40
3857 4271 7.944554 TCAAACTAAAGATTTGTCTCCTCCATT 59.055 33.333 0.00 0.00 38.08 3.16
3873 4287 9.231297 TCTCCTCCATTAGTTAAGAAAAATGTG 57.769 33.333 0.00 0.00 0.00 3.21
3874 4288 8.934023 TCCTCCATTAGTTAAGAAAAATGTGT 57.066 30.769 0.00 0.00 0.00 3.72
3889 4303 8.030106 AGAAAAATGTGTCAAGGTTTTAACGAA 58.970 29.630 0.00 0.00 0.00 3.85
3937 4351 2.508300 AGTCCATATTACAACCGCCCTT 59.492 45.455 0.00 0.00 0.00 3.95
3938 4352 3.053917 AGTCCATATTACAACCGCCCTTT 60.054 43.478 0.00 0.00 0.00 3.11
3944 4358 0.037160 TACAACCGCCCTTTCCTTCC 59.963 55.000 0.00 0.00 0.00 3.46
4091 4525 3.403558 GAGGGCCTCGGGAGCTTT 61.404 66.667 19.53 0.00 0.00 3.51
4273 4707 4.889856 CCGGTCCGATGCGCATCA 62.890 66.667 40.42 25.34 37.69 3.07
4352 4800 2.355986 TGTCGGCGGCTATGGACTT 61.356 57.895 14.51 0.00 0.00 3.01
4390 4838 2.126071 CGCGGTGTTGGACGATCT 60.126 61.111 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.678717 CTCGTCCCGTGTACCGCAG 62.679 68.421 0.00 0.00 34.38 5.18
10 11 3.740397 CTCGTCCCGTGTACCGCA 61.740 66.667 0.00 0.00 34.38 5.69
12 13 4.487412 GGCTCGTCCCGTGTACCG 62.487 72.222 0.00 0.00 0.00 4.02
29 30 4.602259 ACGTCCGTGTGCCACAGG 62.602 66.667 10.48 10.48 33.40 4.00
30 31 3.337889 CACGTCCGTGTGCCACAG 61.338 66.667 11.49 0.00 40.91 3.66
36 37 4.901123 TGTGGGCACGTCCGTGTG 62.901 66.667 19.67 1.83 46.90 3.82
37 38 4.164087 TTGTGGGCACGTCCGTGT 62.164 61.111 19.67 0.00 46.90 4.49
39 40 4.922026 GGTTGTGGGCACGTCCGT 62.922 66.667 0.00 0.00 34.94 4.69
40 41 4.920112 TGGTTGTGGGCACGTCCG 62.920 66.667 0.00 0.00 34.94 4.79
41 42 3.284449 GTGGTTGTGGGCACGTCC 61.284 66.667 0.00 0.00 0.00 4.79
42 43 3.284449 GGTGGTTGTGGGCACGTC 61.284 66.667 0.00 0.00 0.00 4.34
44 45 4.920112 TCGGTGGTTGTGGGCACG 62.920 66.667 0.00 0.00 0.00 5.34
45 46 3.284449 GTCGGTGGTTGTGGGCAC 61.284 66.667 0.00 0.00 0.00 5.01
46 47 3.469863 GAGTCGGTGGTTGTGGGCA 62.470 63.158 0.00 0.00 0.00 5.36
47 48 2.668550 GAGTCGGTGGTTGTGGGC 60.669 66.667 0.00 0.00 0.00 5.36
48 49 2.032071 GGAGTCGGTGGTTGTGGG 59.968 66.667 0.00 0.00 0.00 4.61
49 50 2.357034 CGGAGTCGGTGGTTGTGG 60.357 66.667 0.00 0.00 0.00 4.17
87 88 4.796231 ATCAGCGGTGCCGACGAC 62.796 66.667 15.45 0.00 42.83 4.34
88 89 4.492160 GATCAGCGGTGCCGACGA 62.492 66.667 15.45 9.61 42.83 4.20
100 101 4.552365 ACCATGGCCGCCGATCAG 62.552 66.667 13.04 0.00 0.00 2.90
101 102 4.545706 GACCATGGCCGCCGATCA 62.546 66.667 13.04 0.00 0.00 2.92
112 113 4.838152 CTCCCCACGCCGACCATG 62.838 72.222 0.00 0.00 0.00 3.66
116 117 3.827898 CTCTCTCCCCACGCCGAC 61.828 72.222 0.00 0.00 0.00 4.79
117 118 3.997400 CTCTCTCTCCCCACGCCGA 62.997 68.421 0.00 0.00 0.00 5.54
118 119 3.522731 CTCTCTCTCCCCACGCCG 61.523 72.222 0.00 0.00 0.00 6.46
119 120 2.043852 TCTCTCTCTCCCCACGCC 60.044 66.667 0.00 0.00 0.00 5.68
120 121 2.124693 CCTCTCTCTCTCCCCACGC 61.125 68.421 0.00 0.00 0.00 5.34
121 122 0.184933 ATCCTCTCTCTCTCCCCACG 59.815 60.000 0.00 0.00 0.00 4.94
122 123 2.225017 CCTATCCTCTCTCTCTCCCCAC 60.225 59.091 0.00 0.00 0.00 4.61
123 124 2.069775 CCTATCCTCTCTCTCTCCCCA 58.930 57.143 0.00 0.00 0.00 4.96
124 125 1.357761 CCCTATCCTCTCTCTCTCCCC 59.642 61.905 0.00 0.00 0.00 4.81
125 126 2.041216 GTCCCTATCCTCTCTCTCTCCC 59.959 59.091 0.00 0.00 0.00 4.30
126 127 2.290071 CGTCCCTATCCTCTCTCTCTCC 60.290 59.091 0.00 0.00 0.00 3.71
127 128 2.370849 ACGTCCCTATCCTCTCTCTCTC 59.629 54.545 0.00 0.00 0.00 3.20
128 129 2.370849 GACGTCCCTATCCTCTCTCTCT 59.629 54.545 3.51 0.00 0.00 3.10
129 130 2.105134 TGACGTCCCTATCCTCTCTCTC 59.895 54.545 14.12 0.00 0.00 3.20
130 131 2.105821 CTGACGTCCCTATCCTCTCTCT 59.894 54.545 14.12 0.00 0.00 3.10
131 132 2.105134 TCTGACGTCCCTATCCTCTCTC 59.895 54.545 14.12 0.00 0.00 3.20
132 133 2.128535 TCTGACGTCCCTATCCTCTCT 58.871 52.381 14.12 0.00 0.00 3.10
133 134 2.642154 TCTGACGTCCCTATCCTCTC 57.358 55.000 14.12 0.00 0.00 3.20
134 135 3.383698 TTTCTGACGTCCCTATCCTCT 57.616 47.619 14.12 0.00 0.00 3.69
135 136 3.738590 GCTTTTCTGACGTCCCTATCCTC 60.739 52.174 14.12 0.00 0.00 3.71
136 137 2.168728 GCTTTTCTGACGTCCCTATCCT 59.831 50.000 14.12 0.00 0.00 3.24
137 138 2.552031 GCTTTTCTGACGTCCCTATCC 58.448 52.381 14.12 0.00 0.00 2.59
138 139 2.093658 TGGCTTTTCTGACGTCCCTATC 60.094 50.000 14.12 0.00 0.00 2.08
139 140 1.906574 TGGCTTTTCTGACGTCCCTAT 59.093 47.619 14.12 0.00 0.00 2.57
140 141 1.344065 TGGCTTTTCTGACGTCCCTA 58.656 50.000 14.12 0.00 0.00 3.53
141 142 0.693049 ATGGCTTTTCTGACGTCCCT 59.307 50.000 14.12 0.00 0.00 4.20
142 143 1.087501 GATGGCTTTTCTGACGTCCC 58.912 55.000 14.12 5.42 0.00 4.46
143 144 1.087501 GGATGGCTTTTCTGACGTCC 58.912 55.000 14.12 0.00 43.14 4.79
144 145 2.100605 AGGATGGCTTTTCTGACGTC 57.899 50.000 9.11 9.11 0.00 4.34
145 146 2.554032 CAAAGGATGGCTTTTCTGACGT 59.446 45.455 0.00 0.00 0.00 4.34
146 147 2.669391 GCAAAGGATGGCTTTTCTGACG 60.669 50.000 0.00 0.00 0.00 4.35
147 148 2.560105 AGCAAAGGATGGCTTTTCTGAC 59.440 45.455 0.00 0.00 36.92 3.51
148 149 2.821969 GAGCAAAGGATGGCTTTTCTGA 59.178 45.455 0.00 0.00 41.22 3.27
149 150 2.415090 CGAGCAAAGGATGGCTTTTCTG 60.415 50.000 0.00 0.00 41.22 3.02
150 151 1.815003 CGAGCAAAGGATGGCTTTTCT 59.185 47.619 0.00 0.00 41.22 2.52
151 152 1.812571 TCGAGCAAAGGATGGCTTTTC 59.187 47.619 0.00 0.00 41.22 2.29
152 153 1.909700 TCGAGCAAAGGATGGCTTTT 58.090 45.000 0.00 0.00 41.22 2.27
153 154 1.541588 GTTCGAGCAAAGGATGGCTTT 59.458 47.619 0.00 0.00 41.22 3.51
154 155 1.168714 GTTCGAGCAAAGGATGGCTT 58.831 50.000 0.00 0.00 41.22 4.35
155 156 0.678048 GGTTCGAGCAAAGGATGGCT 60.678 55.000 0.53 0.00 44.48 4.75
156 157 0.678048 AGGTTCGAGCAAAGGATGGC 60.678 55.000 0.53 0.00 0.00 4.40
157 158 1.065854 AGAGGTTCGAGCAAAGGATGG 60.066 52.381 0.53 0.00 0.00 3.51
158 159 2.393271 AGAGGTTCGAGCAAAGGATG 57.607 50.000 0.53 0.00 0.00 3.51
159 160 2.168728 GGTAGAGGTTCGAGCAAAGGAT 59.831 50.000 0.53 0.00 0.00 3.24
160 161 1.549170 GGTAGAGGTTCGAGCAAAGGA 59.451 52.381 0.53 0.00 0.00 3.36
161 162 1.736032 CGGTAGAGGTTCGAGCAAAGG 60.736 57.143 0.53 0.00 0.00 3.11
162 163 1.201647 TCGGTAGAGGTTCGAGCAAAG 59.798 52.381 0.53 0.00 0.00 2.77
163 164 1.250328 TCGGTAGAGGTTCGAGCAAA 58.750 50.000 0.53 0.00 0.00 3.68
164 165 1.404391 GATCGGTAGAGGTTCGAGCAA 59.596 52.381 0.53 0.00 38.87 3.91
165 166 1.022735 GATCGGTAGAGGTTCGAGCA 58.977 55.000 0.53 0.00 38.87 4.26
166 167 1.022735 TGATCGGTAGAGGTTCGAGC 58.977 55.000 0.00 0.00 39.38 5.03
167 168 2.226912 GGATGATCGGTAGAGGTTCGAG 59.773 54.545 0.00 0.00 36.34 4.04
168 169 2.228059 GGATGATCGGTAGAGGTTCGA 58.772 52.381 0.00 0.00 37.33 3.71
169 170 1.269998 GGGATGATCGGTAGAGGTTCG 59.730 57.143 0.00 0.00 0.00 3.95
170 171 1.269998 CGGGATGATCGGTAGAGGTTC 59.730 57.143 0.00 0.00 0.00 3.62
171 172 1.133575 TCGGGATGATCGGTAGAGGTT 60.134 52.381 0.00 0.00 0.00 3.50
172 173 0.477204 TCGGGATGATCGGTAGAGGT 59.523 55.000 0.00 0.00 0.00 3.85
173 174 1.269998 GTTCGGGATGATCGGTAGAGG 59.730 57.143 0.00 0.00 0.00 3.69
174 175 1.954382 TGTTCGGGATGATCGGTAGAG 59.046 52.381 0.00 0.00 0.00 2.43
175 176 2.061509 TGTTCGGGATGATCGGTAGA 57.938 50.000 0.00 0.00 0.00 2.59
176 177 2.296190 TCATGTTCGGGATGATCGGTAG 59.704 50.000 0.00 0.00 0.00 3.18
177 178 2.312390 TCATGTTCGGGATGATCGGTA 58.688 47.619 0.00 0.00 0.00 4.02
178 179 1.119684 TCATGTTCGGGATGATCGGT 58.880 50.000 0.00 0.00 0.00 4.69
179 180 2.462456 ATCATGTTCGGGATGATCGG 57.538 50.000 0.00 0.00 36.02 4.18
180 181 3.058708 CCAAATCATGTTCGGGATGATCG 60.059 47.826 0.00 0.00 39.21 3.69
181 182 3.254166 CCCAAATCATGTTCGGGATGATC 59.746 47.826 5.61 0.00 39.21 2.92
182 183 3.117550 TCCCAAATCATGTTCGGGATGAT 60.118 43.478 9.03 0.00 41.08 2.45
183 184 2.240921 TCCCAAATCATGTTCGGGATGA 59.759 45.455 9.03 0.00 41.08 2.92
184 185 2.653726 TCCCAAATCATGTTCGGGATG 58.346 47.619 9.03 0.00 41.08 3.51
187 188 1.067516 GCATCCCAAATCATGTTCGGG 59.932 52.381 5.27 5.27 38.34 5.14
188 189 1.268692 CGCATCCCAAATCATGTTCGG 60.269 52.381 0.00 0.00 0.00 4.30
189 190 1.268692 CCGCATCCCAAATCATGTTCG 60.269 52.381 0.00 0.00 0.00 3.95
190 191 1.536709 GCCGCATCCCAAATCATGTTC 60.537 52.381 0.00 0.00 0.00 3.18
191 192 0.461135 GCCGCATCCCAAATCATGTT 59.539 50.000 0.00 0.00 0.00 2.71
192 193 1.394266 GGCCGCATCCCAAATCATGT 61.394 55.000 0.00 0.00 0.00 3.21
193 194 1.364901 GGCCGCATCCCAAATCATG 59.635 57.895 0.00 0.00 0.00 3.07
194 195 2.195567 CGGCCGCATCCCAAATCAT 61.196 57.895 14.67 0.00 0.00 2.45
195 196 2.828095 CGGCCGCATCCCAAATCA 60.828 61.111 14.67 0.00 0.00 2.57
196 197 4.270376 GCGGCCGCATCCCAAATC 62.270 66.667 43.55 11.09 41.49 2.17
221 222 2.824041 ATTGGATCGTGGGTGCGC 60.824 61.111 0.00 0.00 0.00 6.09
222 223 2.472059 CCATTGGATCGTGGGTGCG 61.472 63.158 0.00 0.00 0.00 5.34
223 224 0.466189 ATCCATTGGATCGTGGGTGC 60.466 55.000 12.62 0.00 38.09 5.01
224 225 2.368548 TCTATCCATTGGATCGTGGGTG 59.631 50.000 21.45 5.33 42.11 4.61
225 226 2.689658 TCTATCCATTGGATCGTGGGT 58.310 47.619 21.45 0.00 42.11 4.51
226 227 3.668447 CTTCTATCCATTGGATCGTGGG 58.332 50.000 21.45 8.40 42.11 4.61
227 228 3.070018 GCTTCTATCCATTGGATCGTGG 58.930 50.000 21.45 12.72 42.11 4.94
228 229 2.733552 CGCTTCTATCCATTGGATCGTG 59.266 50.000 21.45 12.86 42.11 4.35
229 230 2.289072 CCGCTTCTATCCATTGGATCGT 60.289 50.000 21.45 1.81 42.11 3.73
230 231 2.029020 TCCGCTTCTATCCATTGGATCG 60.029 50.000 21.45 17.03 42.11 3.69
231 232 3.244215 TGTCCGCTTCTATCCATTGGATC 60.244 47.826 21.45 6.38 42.11 3.36
232 233 2.705658 TGTCCGCTTCTATCCATTGGAT 59.294 45.455 21.53 21.53 45.40 3.41
233 234 2.115427 TGTCCGCTTCTATCCATTGGA 58.885 47.619 8.08 8.08 35.55 3.53
234 235 2.620251 TGTCCGCTTCTATCCATTGG 57.380 50.000 0.00 0.00 0.00 3.16
235 236 2.810274 CCATGTCCGCTTCTATCCATTG 59.190 50.000 0.00 0.00 0.00 2.82
236 237 2.224621 CCCATGTCCGCTTCTATCCATT 60.225 50.000 0.00 0.00 0.00 3.16
237 238 1.349026 CCCATGTCCGCTTCTATCCAT 59.651 52.381 0.00 0.00 0.00 3.41
238 239 0.758734 CCCATGTCCGCTTCTATCCA 59.241 55.000 0.00 0.00 0.00 3.41
239 240 0.603975 GCCCATGTCCGCTTCTATCC 60.604 60.000 0.00 0.00 0.00 2.59
240 241 0.946221 CGCCCATGTCCGCTTCTATC 60.946 60.000 0.00 0.00 0.00 2.08
241 242 1.069765 CGCCCATGTCCGCTTCTAT 59.930 57.895 0.00 0.00 0.00 1.98
242 243 1.609635 TTCGCCCATGTCCGCTTCTA 61.610 55.000 0.00 0.00 0.00 2.10
243 244 2.954684 TTCGCCCATGTCCGCTTCT 61.955 57.895 0.00 0.00 0.00 2.85
244 245 2.435938 TTCGCCCATGTCCGCTTC 60.436 61.111 0.00 0.00 0.00 3.86
245 246 2.746277 GTTCGCCCATGTCCGCTT 60.746 61.111 0.00 0.00 0.00 4.68
246 247 4.015406 TGTTCGCCCATGTCCGCT 62.015 61.111 0.00 0.00 0.00 5.52
247 248 3.799755 GTGTTCGCCCATGTCCGC 61.800 66.667 0.00 0.00 0.00 5.54
248 249 1.305219 AATGTGTTCGCCCATGTCCG 61.305 55.000 0.00 0.00 0.00 4.79
249 250 0.171007 CAATGTGTTCGCCCATGTCC 59.829 55.000 0.00 0.00 0.00 4.02
250 251 0.456653 GCAATGTGTTCGCCCATGTC 60.457 55.000 0.00 0.00 0.00 3.06
251 252 1.586028 GCAATGTGTTCGCCCATGT 59.414 52.632 0.00 0.00 0.00 3.21
252 253 1.153784 GGCAATGTGTTCGCCCATG 60.154 57.895 0.00 0.00 40.07 3.66
253 254 2.699768 CGGCAATGTGTTCGCCCAT 61.700 57.895 0.00 0.00 43.17 4.00
254 255 2.733319 TACGGCAATGTGTTCGCCCA 62.733 55.000 0.00 0.00 43.17 5.36
255 256 1.373590 ATACGGCAATGTGTTCGCCC 61.374 55.000 0.00 0.00 43.17 6.13
256 257 0.027586 GATACGGCAATGTGTTCGCC 59.972 55.000 0.00 0.00 42.64 5.54
257 258 0.724549 TGATACGGCAATGTGTTCGC 59.275 50.000 0.00 0.00 0.00 4.70
258 259 3.160545 GTTTGATACGGCAATGTGTTCG 58.839 45.455 0.00 0.00 0.00 3.95
259 260 3.160545 CGTTTGATACGGCAATGTGTTC 58.839 45.455 0.00 0.00 46.42 3.18
260 261 3.196007 CGTTTGATACGGCAATGTGTT 57.804 42.857 0.00 0.00 46.42 3.32
261 262 2.892373 CGTTTGATACGGCAATGTGT 57.108 45.000 0.00 0.00 46.42 3.72
271 272 4.863131 AGTCAGATTTCGTCCGTTTGATAC 59.137 41.667 0.00 0.00 0.00 2.24
272 273 5.068234 AGTCAGATTTCGTCCGTTTGATA 57.932 39.130 0.00 0.00 0.00 2.15
273 274 3.926616 AGTCAGATTTCGTCCGTTTGAT 58.073 40.909 0.00 0.00 0.00 2.57
274 275 3.380479 AGTCAGATTTCGTCCGTTTGA 57.620 42.857 0.00 0.00 0.00 2.69
275 276 5.371629 GTTTAGTCAGATTTCGTCCGTTTG 58.628 41.667 0.00 0.00 0.00 2.93
276 277 4.450080 GGTTTAGTCAGATTTCGTCCGTTT 59.550 41.667 0.00 0.00 0.00 3.60
277 278 3.992427 GGTTTAGTCAGATTTCGTCCGTT 59.008 43.478 0.00 0.00 0.00 4.44
278 279 3.582780 GGTTTAGTCAGATTTCGTCCGT 58.417 45.455 0.00 0.00 0.00 4.69
279 280 2.597305 CGGTTTAGTCAGATTTCGTCCG 59.403 50.000 0.00 0.00 0.00 4.79
280 281 2.928116 CCGGTTTAGTCAGATTTCGTCC 59.072 50.000 0.00 0.00 0.00 4.79
281 282 3.611549 GTCCGGTTTAGTCAGATTTCGTC 59.388 47.826 0.00 0.00 0.00 4.20
282 283 3.582780 GTCCGGTTTAGTCAGATTTCGT 58.417 45.455 0.00 0.00 0.00 3.85
283 284 2.597305 CGTCCGGTTTAGTCAGATTTCG 59.403 50.000 0.00 0.00 0.00 3.46
284 285 3.582780 ACGTCCGGTTTAGTCAGATTTC 58.417 45.455 0.00 0.00 0.00 2.17
285 286 3.582780 GACGTCCGGTTTAGTCAGATTT 58.417 45.455 3.51 0.00 34.09 2.17
286 287 2.094338 GGACGTCCGGTTTAGTCAGATT 60.094 50.000 20.85 0.00 35.49 2.40
287 288 1.475682 GGACGTCCGGTTTAGTCAGAT 59.524 52.381 20.85 0.00 35.49 2.90
288 289 0.883833 GGACGTCCGGTTTAGTCAGA 59.116 55.000 20.85 0.00 35.49 3.27
289 290 3.413522 GGACGTCCGGTTTAGTCAG 57.586 57.895 20.85 0.65 35.49 3.51
300 301 1.008079 ACGACTCAAACGGACGTCC 60.008 57.895 25.28 25.28 31.69 4.79
301 302 0.593263 ACACGACTCAAACGGACGTC 60.593 55.000 7.13 7.13 35.05 4.34
302 303 0.662619 TACACGACTCAAACGGACGT 59.337 50.000 0.00 0.00 37.68 4.34
303 304 1.324718 CTACACGACTCAAACGGACG 58.675 55.000 0.00 0.00 34.93 4.79
304 305 2.049228 CACTACACGACTCAAACGGAC 58.951 52.381 0.00 0.00 34.93 4.79
305 306 1.001048 CCACTACACGACTCAAACGGA 60.001 52.381 0.00 0.00 34.93 4.69
306 307 1.001048 TCCACTACACGACTCAAACGG 60.001 52.381 0.00 0.00 34.93 4.44
307 308 2.287427 ACTCCACTACACGACTCAAACG 60.287 50.000 0.00 0.00 0.00 3.60
308 309 3.366440 ACTCCACTACACGACTCAAAC 57.634 47.619 0.00 0.00 0.00 2.93
309 310 3.491964 CCAACTCCACTACACGACTCAAA 60.492 47.826 0.00 0.00 0.00 2.69
310 311 2.035449 CCAACTCCACTACACGACTCAA 59.965 50.000 0.00 0.00 0.00 3.02
311 312 1.611977 CCAACTCCACTACACGACTCA 59.388 52.381 0.00 0.00 0.00 3.41
312 313 1.669211 GCCAACTCCACTACACGACTC 60.669 57.143 0.00 0.00 0.00 3.36
313 314 0.317479 GCCAACTCCACTACACGACT 59.683 55.000 0.00 0.00 0.00 4.18
314 315 0.669625 GGCCAACTCCACTACACGAC 60.670 60.000 0.00 0.00 0.00 4.34
315 316 0.830444 AGGCCAACTCCACTACACGA 60.830 55.000 5.01 0.00 0.00 4.35
316 317 0.670546 CAGGCCAACTCCACTACACG 60.671 60.000 5.01 0.00 0.00 4.49
317 318 0.685097 TCAGGCCAACTCCACTACAC 59.315 55.000 5.01 0.00 0.00 2.90
318 319 1.429930 TTCAGGCCAACTCCACTACA 58.570 50.000 5.01 0.00 0.00 2.74
319 320 2.027192 TCATTCAGGCCAACTCCACTAC 60.027 50.000 5.01 0.00 0.00 2.73
320 321 2.265367 TCATTCAGGCCAACTCCACTA 58.735 47.619 5.01 0.00 0.00 2.74
321 322 1.067295 TCATTCAGGCCAACTCCACT 58.933 50.000 5.01 0.00 0.00 4.00
322 323 1.815003 CTTCATTCAGGCCAACTCCAC 59.185 52.381 5.01 0.00 0.00 4.02
323 324 1.272092 CCTTCATTCAGGCCAACTCCA 60.272 52.381 5.01 0.00 0.00 3.86
324 325 1.004745 TCCTTCATTCAGGCCAACTCC 59.995 52.381 5.01 0.00 33.35 3.85
325 326 2.496899 TCCTTCATTCAGGCCAACTC 57.503 50.000 5.01 0.00 33.35 3.01
326 327 2.731572 CATCCTTCATTCAGGCCAACT 58.268 47.619 5.01 0.00 33.35 3.16
327 328 1.135721 GCATCCTTCATTCAGGCCAAC 59.864 52.381 5.01 0.00 33.35 3.77
328 329 1.006281 AGCATCCTTCATTCAGGCCAA 59.994 47.619 5.01 0.00 33.35 4.52
329 330 0.627451 AGCATCCTTCATTCAGGCCA 59.373 50.000 5.01 0.00 33.35 5.36
330 331 1.316651 GAGCATCCTTCATTCAGGCC 58.683 55.000 0.00 0.00 33.35 5.19
331 332 1.674962 GTGAGCATCCTTCATTCAGGC 59.325 52.381 0.00 0.00 33.35 4.85
332 333 3.278668 AGTGAGCATCCTTCATTCAGG 57.721 47.619 0.00 0.00 34.86 3.86
333 334 3.181499 GCAAGTGAGCATCCTTCATTCAG 60.181 47.826 0.00 0.00 0.00 3.02
334 335 2.751259 GCAAGTGAGCATCCTTCATTCA 59.249 45.455 0.00 0.00 0.00 2.57
335 336 3.015327 AGCAAGTGAGCATCCTTCATTC 58.985 45.455 0.00 0.00 36.85 2.67
336 337 3.015327 GAGCAAGTGAGCATCCTTCATT 58.985 45.455 0.00 0.00 36.85 2.57
337 338 2.641305 GAGCAAGTGAGCATCCTTCAT 58.359 47.619 0.00 0.00 36.85 2.57
345 346 2.108771 TGTGCGAGCAAGTGAGCA 59.891 55.556 0.00 0.00 36.85 4.26
351 352 1.956170 AGGAACGTGTGCGAGCAAG 60.956 57.895 0.00 0.00 42.00 4.01
490 491 3.706373 TGGAAGCCGAGCTGGACC 61.706 66.667 0.00 2.64 39.62 4.46
549 550 1.801913 CCGTCTCTTTCAGGTCGCG 60.802 63.158 0.00 0.00 0.00 5.87
725 732 3.555324 GGGAGGCTAGGCTCAGGC 61.555 72.222 38.05 24.87 41.27 4.85
726 733 1.383803 AAGGGAGGCTAGGCTCAGG 60.384 63.158 38.05 0.00 0.00 3.86
729 736 2.503382 CGGAAGGGAGGCTAGGCTC 61.503 68.421 32.63 32.63 0.00 4.70
730 737 2.444895 CGGAAGGGAGGCTAGGCT 60.445 66.667 20.36 20.36 0.00 4.58
731 738 4.243008 GCGGAAGGGAGGCTAGGC 62.243 72.222 8.55 8.55 0.00 3.93
829 841 2.116983 ATCTGTGCTTGTGCCCGACT 62.117 55.000 0.00 0.00 38.71 4.18
830 842 0.391130 TATCTGTGCTTGTGCCCGAC 60.391 55.000 0.00 0.00 38.71 4.79
831 843 0.391130 GTATCTGTGCTTGTGCCCGA 60.391 55.000 0.00 0.00 38.71 5.14
832 844 1.695893 CGTATCTGTGCTTGTGCCCG 61.696 60.000 0.00 0.00 38.71 6.13
833 845 1.369091 CCGTATCTGTGCTTGTGCCC 61.369 60.000 0.00 0.00 38.71 5.36
834 846 1.982073 GCCGTATCTGTGCTTGTGCC 61.982 60.000 0.00 0.00 38.71 5.01
835 847 1.425428 GCCGTATCTGTGCTTGTGC 59.575 57.895 0.00 0.00 40.20 4.57
836 848 1.695893 CCGCCGTATCTGTGCTTGTG 61.696 60.000 0.00 0.00 0.00 3.33
840 852 4.530857 GGCCGCCGTATCTGTGCT 62.531 66.667 0.00 0.00 0.00 4.40
856 868 0.251916 TTGACCTTATGCTCCACCGG 59.748 55.000 0.00 0.00 0.00 5.28
862 874 2.744202 CAGGTGTGTTGACCTTATGCTC 59.256 50.000 0.00 0.00 44.53 4.26
875 887 3.314331 CTCCTCGGCCAGGTGTGT 61.314 66.667 17.55 0.00 43.95 3.72
888 900 0.701147 AAAAGCTAGCAAGGCCTCCT 59.299 50.000 18.83 8.59 33.87 3.69
915 927 1.144936 CGGGCAGAAGAAGCTAGGG 59.855 63.158 0.00 0.00 0.00 3.53
988 1000 2.356313 CGCCATCCTTCCGATCCG 60.356 66.667 0.00 0.00 0.00 4.18
1022 1034 4.785512 AAGCTGCTCTCGACGGCG 62.786 66.667 2.87 2.87 44.36 6.46
1049 1061 4.559229 GTACTCCGGCGGCCGTAC 62.559 72.222 36.22 29.01 46.80 3.67
1122 1134 1.202615 GCTCGGGTTATACTGGGGTTC 60.203 57.143 0.00 0.00 0.00 3.62
1165 1179 3.348967 GACCATTGTGACGACGCGC 62.349 63.158 5.73 0.00 0.00 6.86
1182 1196 0.250234 CAGAAGCAGGGAATGGACGA 59.750 55.000 0.00 0.00 0.00 4.20
1327 1501 3.762288 TGCGACCACTTATCAGAAGTACT 59.238 43.478 0.00 0.00 0.00 2.73
1328 1502 4.106029 TGCGACCACTTATCAGAAGTAC 57.894 45.455 0.00 0.00 0.00 2.73
1329 1503 5.339008 AATGCGACCACTTATCAGAAGTA 57.661 39.130 0.00 0.00 0.00 2.24
1330 1504 3.895232 ATGCGACCACTTATCAGAAGT 57.105 42.857 0.00 0.00 0.00 3.01
1331 1505 4.728882 GCAAATGCGACCACTTATCAGAAG 60.729 45.833 0.00 0.00 0.00 2.85
1346 1557 2.144833 TGGCAACTCCAGCAAATGCG 62.145 55.000 0.00 0.00 40.72 4.73
1359 1570 5.009010 CACCTACCAGATAATCAATGGCAAC 59.991 44.000 0.00 0.00 37.64 4.17
1417 1628 1.681264 GCTGTGTTGTAGCCAAAACCT 59.319 47.619 0.00 0.00 37.91 3.50
1430 1641 1.228245 ATGTCGCCTTGGCTGTGTT 60.228 52.632 10.12 0.00 0.00 3.32
1453 1669 1.148498 GGAACGCCAAGATAGGGGG 59.852 63.158 0.00 0.00 45.21 5.40
1517 1733 7.060600 TCAGCGTATCATTTAAAGTTCACAG 57.939 36.000 0.00 0.00 0.00 3.66
1557 1793 7.220108 AGTGAAAGCTGATACGTTTTGTTTTTC 59.780 33.333 0.00 0.00 0.00 2.29
1600 1836 7.255520 CGGGGTAATATATCATACTCCTACAGC 60.256 44.444 10.49 0.00 39.99 4.40
1601 1837 7.255520 GCGGGGTAATATATCATACTCCTACAG 60.256 44.444 10.49 0.00 39.99 2.74
1602 1838 6.548622 GCGGGGTAATATATCATACTCCTACA 59.451 42.308 10.49 0.00 39.99 2.74
1603 1839 6.293845 CGCGGGGTAATATATCATACTCCTAC 60.294 46.154 10.49 3.81 39.99 3.18
1679 1915 1.177256 AAAGCAAGCACAGCTCAGGG 61.177 55.000 0.00 0.00 42.53 4.45
1775 2016 2.408333 GCCCAAGTTGCGAGCATAT 58.592 52.632 0.00 0.00 0.00 1.78
1824 2065 2.779755 ATTCCACGTGCATTACTGGA 57.220 45.000 10.91 0.00 35.89 3.86
1872 2116 7.108194 AGCCCTACCAAAAACTAATACAGTAC 58.892 38.462 0.00 0.00 36.04 2.73
1886 2130 0.847373 TGTGGTTGAGCCCTACCAAA 59.153 50.000 2.60 0.00 46.72 3.28
1896 2140 1.308998 GGTCAAGTGGTGTGGTTGAG 58.691 55.000 0.00 0.00 30.94 3.02
1900 2144 0.550914 ACATGGTCAAGTGGTGTGGT 59.449 50.000 0.00 0.00 0.00 4.16
1941 2185 1.678728 GGTGCGTGATCCAATGGAAGA 60.679 52.381 5.89 0.00 34.34 2.87
1942 2186 0.734889 GGTGCGTGATCCAATGGAAG 59.265 55.000 5.89 0.00 34.34 3.46
1943 2187 0.679640 GGGTGCGTGATCCAATGGAA 60.680 55.000 5.89 0.00 34.34 3.53
1944 2188 1.077787 GGGTGCGTGATCCAATGGA 60.078 57.895 3.67 3.67 35.55 3.41
1945 2189 2.120909 GGGGTGCGTGATCCAATGG 61.121 63.158 0.00 0.00 0.00 3.16
2060 2304 5.304614 AGTGTGTCAGTTACCAACTCATACT 59.695 40.000 5.08 5.08 40.46 2.12
2160 2458 3.002990 CGATCGGTACTATCGCTGC 57.997 57.895 7.38 0.00 46.20 5.25
2198 2500 2.990514 TGTTGTTCCGTGTCATACATCG 59.009 45.455 0.00 0.00 0.00 3.84
2203 2505 9.186323 CAAAATTAATTGTTGTTCCGTGTCATA 57.814 29.630 0.39 0.00 0.00 2.15
2219 2521 5.726980 TCACCTGCTCTGCAAAATTAATT 57.273 34.783 0.00 0.00 38.41 1.40
2253 2555 3.458163 GACGCCGATGGACAGGGA 61.458 66.667 0.00 0.00 0.00 4.20
2875 3177 2.813908 CGTAGTTGAGCCCCGTGC 60.814 66.667 0.00 0.00 41.71 5.34
3048 3350 2.493099 ATCCTCCTCAGCAGATTCCT 57.507 50.000 0.00 0.00 0.00 3.36
3053 3355 3.397282 TCATCTCTATCCTCCTCAGCAGA 59.603 47.826 0.00 0.00 0.00 4.26
3227 3529 3.570212 GCCATGGGCGGGAGGTAT 61.570 66.667 15.13 0.00 39.62 2.73
3260 3562 1.670083 AAGAAACCGTACCTGCCGC 60.670 57.895 0.00 0.00 0.00 6.53
3438 3746 1.630369 CCTTCACCCTTCACCATCAGA 59.370 52.381 0.00 0.00 0.00 3.27
3439 3747 1.340405 CCCTTCACCCTTCACCATCAG 60.340 57.143 0.00 0.00 0.00 2.90
3443 3751 0.991355 ACACCCTTCACCCTTCACCA 60.991 55.000 0.00 0.00 0.00 4.17
3462 3770 3.340928 CTCTGTTCAATCACAGCCATGA 58.659 45.455 0.00 0.00 43.51 3.07
3463 3771 2.159421 GCTCTGTTCAATCACAGCCATG 60.159 50.000 0.00 0.00 43.51 3.66
3501 3809 5.994054 TCATTCTGTCTTCTTTCAAGGAGTG 59.006 40.000 0.00 0.00 33.18 3.51
3545 3913 2.825861 TTGTGGAACGGAAGGAGTAC 57.174 50.000 0.00 0.00 42.39 2.73
3546 3914 3.833650 TGTATTGTGGAACGGAAGGAGTA 59.166 43.478 0.00 0.00 42.39 2.59
3547 3915 2.635915 TGTATTGTGGAACGGAAGGAGT 59.364 45.455 0.00 0.00 42.39 3.85
3548 3916 3.328382 TGTATTGTGGAACGGAAGGAG 57.672 47.619 0.00 0.00 42.39 3.69
3549 3917 3.992943 ATGTATTGTGGAACGGAAGGA 57.007 42.857 0.00 0.00 42.39 3.36
3550 3918 3.875134 GGTATGTATTGTGGAACGGAAGG 59.125 47.826 0.00 0.00 42.39 3.46
3551 3919 4.766375 AGGTATGTATTGTGGAACGGAAG 58.234 43.478 0.00 0.00 42.39 3.46
3552 3920 4.829872 AGGTATGTATTGTGGAACGGAA 57.170 40.909 0.00 0.00 42.39 4.30
3553 3921 4.383335 GGAAGGTATGTATTGTGGAACGGA 60.383 45.833 0.00 0.00 42.39 4.69
3554 3922 3.875134 GGAAGGTATGTATTGTGGAACGG 59.125 47.826 0.00 0.00 42.39 4.44
3555 3923 4.509616 TGGAAGGTATGTATTGTGGAACG 58.490 43.478 0.00 0.00 42.39 3.95
3556 3924 7.404671 AAATGGAAGGTATGTATTGTGGAAC 57.595 36.000 0.00 0.00 37.35 3.62
3557 3925 9.349713 GATAAATGGAAGGTATGTATTGTGGAA 57.650 33.333 0.00 0.00 0.00 3.53
3558 3926 8.498575 TGATAAATGGAAGGTATGTATTGTGGA 58.501 33.333 0.00 0.00 0.00 4.02
3559 3927 8.690203 TGATAAATGGAAGGTATGTATTGTGG 57.310 34.615 0.00 0.00 0.00 4.17
3634 4002 9.311916 CCAAAATACTTGACTTTCATTTGTTCA 57.688 29.630 0.00 0.00 0.00 3.18
3635 4003 9.528018 TCCAAAATACTTGACTTTCATTTGTTC 57.472 29.630 0.00 0.00 0.00 3.18
3636 4004 9.883142 TTCCAAAATACTTGACTTTCATTTGTT 57.117 25.926 0.00 0.00 0.00 2.83
3637 4005 9.313118 GTTCCAAAATACTTGACTTTCATTTGT 57.687 29.630 0.00 0.00 0.00 2.83
3638 4006 8.479280 CGTTCCAAAATACTTGACTTTCATTTG 58.521 33.333 0.00 0.00 0.00 2.32
3639 4007 8.410141 TCGTTCCAAAATACTTGACTTTCATTT 58.590 29.630 0.00 0.00 0.00 2.32
3640 4008 7.936584 TCGTTCCAAAATACTTGACTTTCATT 58.063 30.769 0.00 0.00 0.00 2.57
3641 4009 7.504924 TCGTTCCAAAATACTTGACTTTCAT 57.495 32.000 0.00 0.00 0.00 2.57
3642 4010 6.928979 TCGTTCCAAAATACTTGACTTTCA 57.071 33.333 0.00 0.00 0.00 2.69
3643 4011 6.856426 CCTTCGTTCCAAAATACTTGACTTTC 59.144 38.462 0.00 0.00 0.00 2.62
3644 4012 6.238925 CCCTTCGTTCCAAAATACTTGACTTT 60.239 38.462 0.00 0.00 0.00 2.66
3645 4013 5.240844 CCCTTCGTTCCAAAATACTTGACTT 59.759 40.000 0.00 0.00 0.00 3.01
3646 4014 4.760204 CCCTTCGTTCCAAAATACTTGACT 59.240 41.667 0.00 0.00 0.00 3.41
3647 4015 4.758165 TCCCTTCGTTCCAAAATACTTGAC 59.242 41.667 0.00 0.00 0.00 3.18
3648 4016 4.975631 TCCCTTCGTTCCAAAATACTTGA 58.024 39.130 0.00 0.00 0.00 3.02
3649 4017 4.760204 ACTCCCTTCGTTCCAAAATACTTG 59.240 41.667 0.00 0.00 0.00 3.16
3650 4018 4.981812 ACTCCCTTCGTTCCAAAATACTT 58.018 39.130 0.00 0.00 0.00 2.24
3651 4019 4.635699 ACTCCCTTCGTTCCAAAATACT 57.364 40.909 0.00 0.00 0.00 2.12
3652 4020 5.727434 TCTACTCCCTTCGTTCCAAAATAC 58.273 41.667 0.00 0.00 0.00 1.89
3653 4021 6.013984 AGTTCTACTCCCTTCGTTCCAAAATA 60.014 38.462 0.00 0.00 0.00 1.40
3654 4022 4.903045 TCTACTCCCTTCGTTCCAAAAT 57.097 40.909 0.00 0.00 0.00 1.82
3655 4023 4.102054 AGTTCTACTCCCTTCGTTCCAAAA 59.898 41.667 0.00 0.00 0.00 2.44
3656 4024 3.644738 AGTTCTACTCCCTTCGTTCCAAA 59.355 43.478 0.00 0.00 0.00 3.28
3657 4025 3.006537 CAGTTCTACTCCCTTCGTTCCAA 59.993 47.826 0.00 0.00 0.00 3.53
3658 4026 2.561419 CAGTTCTACTCCCTTCGTTCCA 59.439 50.000 0.00 0.00 0.00 3.53
3659 4027 2.824341 TCAGTTCTACTCCCTTCGTTCC 59.176 50.000 0.00 0.00 0.00 3.62
3660 4028 4.082136 ACATCAGTTCTACTCCCTTCGTTC 60.082 45.833 0.00 0.00 0.00 3.95
3661 4029 3.833070 ACATCAGTTCTACTCCCTTCGTT 59.167 43.478 0.00 0.00 0.00 3.85
3662 4030 3.432378 ACATCAGTTCTACTCCCTTCGT 58.568 45.455 0.00 0.00 0.00 3.85
3663 4031 5.776173 ATACATCAGTTCTACTCCCTTCG 57.224 43.478 0.00 0.00 0.00 3.79
3664 4032 7.281100 CCAAAATACATCAGTTCTACTCCCTTC 59.719 40.741 0.00 0.00 0.00 3.46
3665 4033 7.112779 CCAAAATACATCAGTTCTACTCCCTT 58.887 38.462 0.00 0.00 0.00 3.95
3666 4034 6.353082 CCCAAAATACATCAGTTCTACTCCCT 60.353 42.308 0.00 0.00 0.00 4.20
3667 4035 5.823045 CCCAAAATACATCAGTTCTACTCCC 59.177 44.000 0.00 0.00 0.00 4.30
3668 4036 5.297029 GCCCAAAATACATCAGTTCTACTCC 59.703 44.000 0.00 0.00 0.00 3.85
3669 4037 5.880332 TGCCCAAAATACATCAGTTCTACTC 59.120 40.000 0.00 0.00 0.00 2.59
3670 4038 5.815581 TGCCCAAAATACATCAGTTCTACT 58.184 37.500 0.00 0.00 0.00 2.57
3727 4140 0.677842 ACGTCCAAGCTTCGGTTAGT 59.322 50.000 10.35 8.22 0.00 2.24
3744 4157 9.708222 CTTAATAAATGAAGGAGACAAATGACG 57.292 33.333 0.00 0.00 0.00 4.35
3832 4245 7.693969 ATGGAGGAGACAAATCTTTAGTTTG 57.306 36.000 0.00 0.00 41.22 2.93
3873 4287 6.324042 TGTTCCTTTTCGTTAAAACCTTGAC 58.676 36.000 0.00 0.00 31.37 3.18
3874 4288 6.512342 TGTTCCTTTTCGTTAAAACCTTGA 57.488 33.333 0.00 0.00 31.37 3.02
3884 4298 5.753921 TGTTTTGTTGTTGTTCCTTTTCGTT 59.246 32.000 0.00 0.00 0.00 3.85
3889 4303 6.754193 TCTCTTGTTTTGTTGTTGTTCCTTT 58.246 32.000 0.00 0.00 0.00 3.11
3937 4351 1.305887 GACGAGGGAGGGGAAGGAA 60.306 63.158 0.00 0.00 0.00 3.36
3938 4352 2.363361 GACGAGGGAGGGGAAGGA 59.637 66.667 0.00 0.00 0.00 3.36
4019 4433 3.562108 AGAAGAGACCTAGGGGAAACA 57.438 47.619 14.81 0.00 36.25 2.83
4081 4495 0.537188 GTCCAGATCAAAGCTCCCGA 59.463 55.000 0.00 0.00 0.00 5.14
4091 4525 0.036732 GTGCCCACAAGTCCAGATCA 59.963 55.000 0.00 0.00 0.00 2.92
4304 4738 4.574614 CCCCGGGATCCAGCCCTA 62.575 72.222 26.32 0.00 46.44 3.53
4322 4756 3.770040 CCGACACATCCTCCGCCA 61.770 66.667 0.00 0.00 0.00 5.69
4390 4838 1.610038 CCATCAAGCTTCTTGTGCACA 59.390 47.619 17.42 17.42 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.