Multiple sequence alignment - TraesCS3A01G249200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G249200 chr3A 100.000 3329 0 0 1 3329 467405127 467401799 0.000000e+00 6148.0
1 TraesCS3A01G249200 chr3D 94.680 1654 71 12 856 2508 348913258 348911621 0.000000e+00 2551.0
2 TraesCS3A01G249200 chr3D 91.166 283 15 6 1 283 348915806 348915534 3.140000e-100 375.0
3 TraesCS3A01G249200 chr3D 89.848 197 18 2 685 880 348915122 348914927 5.510000e-63 252.0
4 TraesCS3A01G249200 chr3B 93.253 1749 78 18 677 2413 448315026 448313306 0.000000e+00 2540.0
5 TraesCS3A01G249200 chr3B 92.193 269 13 5 1 269 448315704 448315444 1.130000e-99 374.0
6 TraesCS3A01G249200 chr3B 93.976 166 8 1 2408 2573 448313109 448312946 1.980000e-62 250.0
7 TraesCS3A01G249200 chr4D 100.000 30 0 0 1589 1618 309943995 309944024 4.640000e-04 56.5
8 TraesCS3A01G249200 chr4A 100.000 30 0 0 1589 1618 164687991 164687962 4.640000e-04 56.5
9 TraesCS3A01G249200 chr2A 87.500 48 4 2 1282 1328 729980044 729980090 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G249200 chr3A 467401799 467405127 3328 True 6148.000000 6148 100.000000 1 3329 1 chr3A.!!$R1 3328
1 TraesCS3A01G249200 chr3D 348911621 348915806 4185 True 1059.333333 2551 91.898000 1 2508 3 chr3D.!!$R1 2507
2 TraesCS3A01G249200 chr3B 448312946 448315704 2758 True 1054.666667 2540 93.140667 1 2573 3 chr3B.!!$R1 2572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 2720 0.096976 CGCCATGACGCCTTAACTTG 59.903 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2618 4599 0.109153 TATGCGCTCCATGCTCCAAT 59.891 50.0 9.73 0.0 40.11 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.480555 CGTCTGCAATTGGGACGC 59.519 61.111 11.76 0.00 44.32 5.19
60 61 2.324330 CGTCTGCAATTGGGACGCA 61.324 57.895 11.76 0.00 44.32 5.24
61 62 1.647545 CGTCTGCAATTGGGACGCAT 61.648 55.000 11.76 0.00 44.32 4.73
84 85 1.368850 GCAACGAAACCAGTGCGTC 60.369 57.895 0.00 0.00 37.26 5.19
141 142 0.883833 CATTTCTTGCCTTGCTCCGT 59.116 50.000 0.00 0.00 0.00 4.69
203 204 0.941542 GTGGTTAGTTCAACTGCGCA 59.058 50.000 10.98 10.98 37.30 6.09
207 208 2.584791 GTTAGTTCAACTGCGCAATGG 58.415 47.619 13.05 0.00 34.06 3.16
214 215 2.146073 AACTGCGCAATGGAAGTGGC 62.146 55.000 13.05 0.00 28.90 5.01
216 217 2.144833 CTGCGCAATGGAAGTGGCAA 62.145 55.000 13.05 0.00 37.57 4.52
222 223 3.578688 GCAATGGAAGTGGCAACTAAAG 58.421 45.455 0.00 0.00 34.77 1.85
224 225 4.217550 GCAATGGAAGTGGCAACTAAAGTA 59.782 41.667 0.00 0.00 34.77 2.24
225 226 5.699839 CAATGGAAGTGGCAACTAAAGTAC 58.300 41.667 0.00 0.00 34.77 2.73
226 227 4.699925 TGGAAGTGGCAACTAAAGTACT 57.300 40.909 0.00 0.00 34.77 2.73
227 228 4.638304 TGGAAGTGGCAACTAAAGTACTC 58.362 43.478 0.00 0.00 34.77 2.59
245 246 9.956720 AAAGTACTCTATATGATTTGCAATTGC 57.043 29.630 23.69 23.69 42.50 3.56
261 262 2.427410 GCCGCAGTGCAAGAAACG 60.427 61.111 16.83 0.00 0.00 3.60
269 270 3.180387 GCAGTGCAAGAAACGCTAAAAAG 59.820 43.478 11.09 0.00 0.00 2.27
272 273 5.514914 CAGTGCAAGAAACGCTAAAAAGAAA 59.485 36.000 0.00 0.00 0.00 2.52
274 275 4.801516 TGCAAGAAACGCTAAAAAGAAACC 59.198 37.500 0.00 0.00 0.00 3.27
275 276 4.208460 GCAAGAAACGCTAAAAAGAAACCC 59.792 41.667 0.00 0.00 0.00 4.11
276 277 4.219143 AGAAACGCTAAAAAGAAACCCG 57.781 40.909 0.00 0.00 0.00 5.28
277 278 3.878699 AGAAACGCTAAAAAGAAACCCGA 59.121 39.130 0.00 0.00 0.00 5.14
278 279 4.517832 AGAAACGCTAAAAAGAAACCCGAT 59.482 37.500 0.00 0.00 0.00 4.18
280 281 4.414999 ACGCTAAAAAGAAACCCGATTC 57.585 40.909 0.00 0.00 0.00 2.52
281 282 4.070009 ACGCTAAAAAGAAACCCGATTCT 58.930 39.130 0.00 0.00 41.34 2.40
289 290 5.707242 AAGAAACCCGATTCTTTCTTTCC 57.293 39.130 6.39 0.00 45.05 3.13
290 291 3.751698 AGAAACCCGATTCTTTCTTTCCG 59.248 43.478 0.00 0.00 36.23 4.30
294 295 2.602878 CCGATTCTTTCTTTCCGACGA 58.397 47.619 0.00 0.00 0.00 4.20
295 296 2.599082 CCGATTCTTTCTTTCCGACGAG 59.401 50.000 0.00 0.00 0.00 4.18
296 297 3.499048 CGATTCTTTCTTTCCGACGAGA 58.501 45.455 0.00 0.00 0.00 4.04
300 333 5.443185 TTCTTTCTTTCCGACGAGAACTA 57.557 39.130 0.00 0.00 32.01 2.24
301 334 5.640189 TCTTTCTTTCCGACGAGAACTAT 57.360 39.130 0.00 0.00 32.01 2.12
303 336 6.091437 TCTTTCTTTCCGACGAGAACTATTC 58.909 40.000 0.00 0.00 32.01 1.75
305 338 4.982999 TCTTTCCGACGAGAACTATTCTG 58.017 43.478 0.00 0.00 40.87 3.02
307 340 5.645067 TCTTTCCGACGAGAACTATTCTGTA 59.355 40.000 0.00 0.00 40.87 2.74
314 347 7.132863 CGACGAGAACTATTCTGTATGATCAA 58.867 38.462 0.00 0.00 40.87 2.57
316 349 7.772166 ACGAGAACTATTCTGTATGATCAACA 58.228 34.615 0.00 5.08 40.87 3.33
324 357 4.445453 TCTGTATGATCAACATGCCACTC 58.555 43.478 0.00 0.00 40.11 3.51
339 377 1.436600 CACTCTCCATCGGCATATGC 58.563 55.000 19.79 19.79 41.14 3.14
354 392 3.233507 CATATGCCCCTAAAATGGTGCT 58.766 45.455 0.00 0.00 0.00 4.40
366 404 9.793259 CCCTAAAATGGTGCTAAGATATTTCTA 57.207 33.333 0.00 0.00 0.00 2.10
383 421 1.202592 TCTACGTCTTGCAACTTGCCA 60.203 47.619 11.29 0.00 44.23 4.92
394 432 1.923864 CAACTTGCCAAAACGGTGAAC 59.076 47.619 0.00 0.00 36.97 3.18
452 523 4.252073 AGCGCATGAATTCAGGATCTATC 58.748 43.478 23.47 3.88 0.00 2.08
460 531 0.312102 TCAGGATCTATCGCAGCACG 59.688 55.000 0.00 0.00 45.62 5.34
526 599 4.505922 TGAATTTCATGTCAACGTTTTGGC 59.494 37.500 0.00 0.00 37.88 4.52
528 601 0.309302 TCATGTCAACGTTTTGGCCG 59.691 50.000 0.00 0.00 36.41 6.13
533 606 1.655959 CAACGTTTTGGCCGGTTCG 60.656 57.895 1.90 3.29 0.00 3.95
547 620 0.451783 GGTTCGCCGAAATGCAGATT 59.548 50.000 0.00 0.00 0.00 2.40
548 621 1.538276 GTTCGCCGAAATGCAGATTG 58.462 50.000 0.00 0.00 0.00 2.67
549 622 1.130373 GTTCGCCGAAATGCAGATTGA 59.870 47.619 0.00 0.00 0.00 2.57
550 623 1.447945 TCGCCGAAATGCAGATTGAA 58.552 45.000 0.00 0.00 0.00 2.69
551 624 1.809547 TCGCCGAAATGCAGATTGAAA 59.190 42.857 0.00 0.00 0.00 2.69
552 625 2.423185 TCGCCGAAATGCAGATTGAAAT 59.577 40.909 0.00 0.00 0.00 2.17
553 626 2.785477 CGCCGAAATGCAGATTGAAATC 59.215 45.455 0.00 0.00 35.64 2.17
554 627 3.731565 CGCCGAAATGCAGATTGAAATCA 60.732 43.478 5.86 0.00 37.89 2.57
555 628 3.549070 GCCGAAATGCAGATTGAAATCAC 59.451 43.478 5.86 0.00 37.89 3.06
556 629 4.676196 GCCGAAATGCAGATTGAAATCACT 60.676 41.667 5.86 0.00 37.89 3.41
557 630 5.449041 GCCGAAATGCAGATTGAAATCACTA 60.449 40.000 5.86 0.00 37.89 2.74
560 633 7.541783 CCGAAATGCAGATTGAAATCACTAAAA 59.458 33.333 5.86 0.00 37.89 1.52
564 637 6.602179 TGCAGATTGAAATCACTAAAAGTCG 58.398 36.000 5.86 0.00 37.89 4.18
568 641 8.383619 CAGATTGAAATCACTAAAAGTCGGTAG 58.616 37.037 5.86 0.00 37.89 3.18
573 646 9.199982 TGAAATCACTAAAAGTCGGTAGTTTAG 57.800 33.333 0.00 0.00 39.61 1.85
592 665 8.154649 AGTTTAGTTGATTATAATTCTGCCCG 57.845 34.615 0.00 0.00 0.00 6.13
616 689 7.024768 CGAAATATTTTCGAACCCAAAAGCTA 58.975 34.615 15.28 0.00 43.97 3.32
617 690 7.007995 CGAAATATTTTCGAACCCAAAAGCTAC 59.992 37.037 15.28 0.00 43.97 3.58
630 704 8.700439 ACCCAAAAGCTACTTGAATACTAAAA 57.300 30.769 9.50 0.00 0.00 1.52
631 705 9.309224 ACCCAAAAGCTACTTGAATACTAAAAT 57.691 29.630 9.50 0.00 0.00 1.82
655 729 9.533253 AATAACTGAAATGTTTTGACTGAAAGG 57.467 29.630 0.00 0.00 39.30 3.11
656 730 6.773976 ACTGAAATGTTTTGACTGAAAGGA 57.226 33.333 0.00 0.00 39.30 3.36
657 731 7.169158 ACTGAAATGTTTTGACTGAAAGGAA 57.831 32.000 0.00 0.00 39.30 3.36
658 732 7.610865 ACTGAAATGTTTTGACTGAAAGGAAA 58.389 30.769 0.00 0.00 39.30 3.13
659 733 8.260114 ACTGAAATGTTTTGACTGAAAGGAAAT 58.740 29.630 0.00 0.00 39.30 2.17
660 734 8.647143 TGAAATGTTTTGACTGAAAGGAAATC 57.353 30.769 0.00 0.00 39.30 2.17
661 735 8.256605 TGAAATGTTTTGACTGAAAGGAAATCA 58.743 29.630 0.00 0.00 39.30 2.57
670 744 4.301628 CTGAAAGGAAATCAGTTTGGTGC 58.698 43.478 0.00 0.00 39.54 5.01
671 745 3.069443 TGAAAGGAAATCAGTTTGGTGCC 59.931 43.478 0.00 0.00 0.00 5.01
672 746 2.683211 AGGAAATCAGTTTGGTGCCT 57.317 45.000 0.00 0.00 0.00 4.75
673 747 3.806949 AGGAAATCAGTTTGGTGCCTA 57.193 42.857 0.00 0.00 0.00 3.93
674 748 3.421844 AGGAAATCAGTTTGGTGCCTAC 58.578 45.455 0.00 0.00 0.00 3.18
692 766 6.366061 GTGCCTACCAAAATGACTGAAATTTC 59.634 38.462 11.41 11.41 0.00 2.17
715 790 1.760613 TGAGTTCGGACAAACCTCACT 59.239 47.619 0.00 0.00 36.31 3.41
774 849 9.504710 CAAGAATCAACATTCTGAATCAGATTC 57.495 33.333 24.18 24.18 46.96 2.52
776 851 9.463902 AGAATCAACATTCTGAATCAGATTCTT 57.536 29.630 26.24 18.24 46.06 2.52
786 861 8.099364 TCTGAATCAGATTCTTGTACAAAACC 57.901 34.615 21.44 0.00 39.96 3.27
814 889 2.257353 GCCACAGCTTCCGAAATGT 58.743 52.632 0.00 0.00 35.50 2.71
831 906 7.040755 TCCGAAATGTAACACAGTCAATCAAAT 60.041 33.333 0.00 0.00 0.00 2.32
839 914 3.065786 CACAGTCAATCAAATGGATCCGG 59.934 47.826 7.39 0.00 34.28 5.14
854 929 1.788229 TCCGGAAGCAGGTGATGATA 58.212 50.000 0.00 0.00 0.00 2.15
862 937 6.578023 GGAAGCAGGTGATGATAGTATATCC 58.422 44.000 0.00 0.00 0.00 2.59
905 2672 1.585297 CAAGGCCCACAAAGCAAAAG 58.415 50.000 0.00 0.00 0.00 2.27
938 2705 2.351932 GCCGTTTTAAAATTCCTCGCCA 60.352 45.455 3.52 0.00 0.00 5.69
953 2720 0.096976 CGCCATGACGCCTTAACTTG 59.903 55.000 0.00 0.00 0.00 3.16
973 2740 3.030291 TGCAACACCTCCAACTCAAAAT 58.970 40.909 0.00 0.00 0.00 1.82
974 2741 3.181477 TGCAACACCTCCAACTCAAAATG 60.181 43.478 0.00 0.00 0.00 2.32
975 2742 3.799917 GCAACACCTCCAACTCAAAATGG 60.800 47.826 0.00 0.00 38.09 3.16
976 2743 3.593442 ACACCTCCAACTCAAAATGGA 57.407 42.857 0.00 0.00 43.32 3.41
978 2745 4.482990 ACACCTCCAACTCAAAATGGAAT 58.517 39.130 0.00 0.00 44.77 3.01
979 2746 4.281688 ACACCTCCAACTCAAAATGGAATG 59.718 41.667 0.00 0.00 44.77 2.67
980 2747 4.281688 CACCTCCAACTCAAAATGGAATGT 59.718 41.667 0.00 0.00 44.77 2.71
988 2755 7.925483 CCAACTCAAAATGGAATGTTAGAACAA 59.075 33.333 0.00 0.00 39.64 2.83
989 2756 8.755018 CAACTCAAAATGGAATGTTAGAACAAC 58.245 33.333 0.00 0.00 43.03 3.32
990 2757 8.006298 ACTCAAAATGGAATGTTAGAACAACA 57.994 30.769 0.00 0.39 43.03 3.33
991 2758 8.137437 ACTCAAAATGGAATGTTAGAACAACAG 58.863 33.333 0.00 0.00 43.03 3.16
992 2759 8.231692 TCAAAATGGAATGTTAGAACAACAGA 57.768 30.769 0.00 0.00 43.03 3.41
993 2760 8.690884 TCAAAATGGAATGTTAGAACAACAGAA 58.309 29.630 0.00 0.00 43.03 3.02
1131 2907 2.856032 GACGACGACGACGAGGAA 59.144 61.111 25.15 0.00 42.66 3.36
1353 3132 1.191647 CGTACAAACTGAACTCCGTGC 59.808 52.381 0.00 0.00 0.00 5.34
1514 3293 4.735132 CGGCGGCAAGTCGGAGAA 62.735 66.667 10.53 0.00 45.57 2.87
1650 3429 2.799371 CGGGACAGCCTCGTACTC 59.201 66.667 0.00 0.00 0.00 2.59
1674 3453 2.042639 GGGCCGACCTACCCAGTA 60.043 66.667 0.00 0.00 46.22 2.74
1680 3459 1.340795 CCGACCTACCCAGTACTCACT 60.341 57.143 0.00 0.00 34.42 3.41
1692 3471 3.842923 CTCACTGGCCGCCGAGAT 61.843 66.667 13.75 0.00 0.00 2.75
1704 3483 3.288290 CGAGATAGCGCCGGGAGT 61.288 66.667 2.29 0.00 0.00 3.85
1860 3639 2.230508 TCCCTGCTGAACTTACTACACG 59.769 50.000 0.00 0.00 0.00 4.49
1917 3696 1.741770 CCCGCTTGTAGGAGCACAC 60.742 63.158 0.00 0.00 42.83 3.82
2082 3861 2.042639 GGGTACTACCGGCAGGGA 60.043 66.667 8.08 0.00 39.83 4.20
2334 4113 0.251653 AGTCCGTTGAGTAGGAGCCA 60.252 55.000 0.00 0.00 37.18 4.75
2514 4495 0.532862 ACTTCTGTCAGGGCAACACG 60.533 55.000 0.00 0.00 39.74 4.49
2551 4532 9.601217 TTTTAAAGATAGCTCAAGTATGACCTC 57.399 33.333 0.00 0.00 0.00 3.85
2559 4540 2.426024 TCAAGTATGACCTCCTACACGC 59.574 50.000 0.00 0.00 0.00 5.34
2562 4543 1.731433 TATGACCTCCTACACGCCGC 61.731 60.000 0.00 0.00 0.00 6.53
2580 4561 3.568686 GCGTTGCGTCCAATACCA 58.431 55.556 0.00 0.00 32.75 3.25
2581 4562 1.423845 GCGTTGCGTCCAATACCAG 59.576 57.895 0.00 0.00 32.75 4.00
2582 4563 1.423845 CGTTGCGTCCAATACCAGC 59.576 57.895 0.00 0.00 32.75 4.85
2583 4564 1.295357 CGTTGCGTCCAATACCAGCA 61.295 55.000 0.00 0.00 35.90 4.41
2584 4565 0.447801 GTTGCGTCCAATACCAGCAG 59.552 55.000 0.00 0.00 39.11 4.24
2585 4566 0.036164 TTGCGTCCAATACCAGCAGT 59.964 50.000 0.00 0.00 39.11 4.40
2586 4567 0.391130 TGCGTCCAATACCAGCAGTC 60.391 55.000 0.00 0.00 33.57 3.51
2587 4568 1.090052 GCGTCCAATACCAGCAGTCC 61.090 60.000 0.00 0.00 0.00 3.85
2588 4569 0.806102 CGTCCAATACCAGCAGTCCG 60.806 60.000 0.00 0.00 0.00 4.79
2589 4570 1.090052 GTCCAATACCAGCAGTCCGC 61.090 60.000 0.00 0.00 42.91 5.54
2590 4571 1.078497 CCAATACCAGCAGTCCGCA 60.078 57.895 0.00 0.00 46.13 5.69
2591 4572 1.369091 CCAATACCAGCAGTCCGCAC 61.369 60.000 0.00 0.00 46.13 5.34
2592 4573 0.673333 CAATACCAGCAGTCCGCACA 60.673 55.000 0.00 0.00 46.13 4.57
2593 4574 0.391661 AATACCAGCAGTCCGCACAG 60.392 55.000 0.00 0.00 46.13 3.66
2594 4575 1.257750 ATACCAGCAGTCCGCACAGA 61.258 55.000 0.00 0.00 46.13 3.41
2595 4576 1.877576 TACCAGCAGTCCGCACAGAG 61.878 60.000 0.00 0.00 46.13 3.35
2596 4577 3.117171 CAGCAGTCCGCACAGAGC 61.117 66.667 0.00 0.00 46.13 4.09
2597 4578 3.619767 AGCAGTCCGCACAGAGCA 61.620 61.111 0.00 0.00 46.13 4.26
2598 4579 3.117171 GCAGTCCGCACAGAGCAG 61.117 66.667 0.00 0.00 46.13 4.24
2599 4580 3.117171 CAGTCCGCACAGAGCAGC 61.117 66.667 0.00 0.00 46.13 5.25
2600 4581 4.385405 AGTCCGCACAGAGCAGCC 62.385 66.667 0.00 0.00 46.13 4.85
2626 4607 1.176527 GCAGTAAGCCAATTGGAGCA 58.823 50.000 29.02 8.43 37.39 4.26
2627 4608 1.753073 GCAGTAAGCCAATTGGAGCAT 59.247 47.619 29.02 12.18 37.39 3.79
2628 4609 2.480759 GCAGTAAGCCAATTGGAGCATG 60.481 50.000 29.02 18.24 37.39 4.06
2629 4610 2.100252 CAGTAAGCCAATTGGAGCATGG 59.900 50.000 29.02 8.78 37.39 3.66
2630 4611 2.025037 AGTAAGCCAATTGGAGCATGGA 60.025 45.455 29.02 2.25 36.27 3.41
2631 4612 1.481871 AAGCCAATTGGAGCATGGAG 58.518 50.000 29.02 0.00 36.27 3.86
2632 4613 1.041447 AGCCAATTGGAGCATGGAGC 61.041 55.000 29.02 8.98 36.27 4.70
2633 4614 2.345880 GCCAATTGGAGCATGGAGCG 62.346 60.000 29.02 0.00 41.67 5.03
2641 4622 4.131376 GCATGGAGCGCATACTGT 57.869 55.556 11.47 0.00 0.00 3.55
2642 4623 1.645455 GCATGGAGCGCATACTGTG 59.355 57.895 11.47 1.36 0.00 3.66
2662 4643 7.551585 ACTGTGCACTCAGATTATATATAGCC 58.448 38.462 19.41 0.00 38.63 3.93
2663 4644 7.398618 ACTGTGCACTCAGATTATATATAGCCT 59.601 37.037 19.41 0.00 38.63 4.58
2664 4645 7.550712 TGTGCACTCAGATTATATATAGCCTG 58.449 38.462 19.41 13.24 0.00 4.85
2665 4646 7.397192 TGTGCACTCAGATTATATATAGCCTGA 59.603 37.037 19.41 17.75 0.00 3.86
2666 4647 8.420222 GTGCACTCAGATTATATATAGCCTGAT 58.580 37.037 10.32 11.05 31.32 2.90
2667 4648 8.985922 TGCACTCAGATTATATATAGCCTGATT 58.014 33.333 18.50 13.71 31.32 2.57
2679 4660 3.895232 AGCCTGATTACTGTAGTGTGG 57.105 47.619 0.00 0.00 0.00 4.17
2680 4661 2.501723 AGCCTGATTACTGTAGTGTGGG 59.498 50.000 0.00 0.00 0.00 4.61
2681 4662 2.420129 GCCTGATTACTGTAGTGTGGGG 60.420 54.545 0.00 0.00 0.00 4.96
2682 4663 2.838202 CCTGATTACTGTAGTGTGGGGT 59.162 50.000 0.00 0.00 0.00 4.95
2683 4664 3.263425 CCTGATTACTGTAGTGTGGGGTT 59.737 47.826 0.00 0.00 0.00 4.11
2684 4665 4.253685 CTGATTACTGTAGTGTGGGGTTG 58.746 47.826 0.00 0.00 0.00 3.77
2685 4666 3.649023 TGATTACTGTAGTGTGGGGTTGT 59.351 43.478 0.00 0.00 0.00 3.32
2686 4667 3.756933 TTACTGTAGTGTGGGGTTGTC 57.243 47.619 0.00 0.00 0.00 3.18
2687 4668 1.802553 ACTGTAGTGTGGGGTTGTCT 58.197 50.000 0.00 0.00 0.00 3.41
2688 4669 2.966915 ACTGTAGTGTGGGGTTGTCTA 58.033 47.619 0.00 0.00 0.00 2.59
2689 4670 3.311091 ACTGTAGTGTGGGGTTGTCTAA 58.689 45.455 0.00 0.00 0.00 2.10
2690 4671 3.712733 ACTGTAGTGTGGGGTTGTCTAAA 59.287 43.478 0.00 0.00 0.00 1.85
2691 4672 4.164604 ACTGTAGTGTGGGGTTGTCTAAAA 59.835 41.667 0.00 0.00 0.00 1.52
2692 4673 5.113446 TGTAGTGTGGGGTTGTCTAAAAA 57.887 39.130 0.00 0.00 0.00 1.94
2757 4738 6.877611 AAAAAGATTACTGTAGTGTGGGTG 57.122 37.500 0.00 0.00 0.00 4.61
2758 4739 3.611766 AGATTACTGTAGTGTGGGTGC 57.388 47.619 0.00 0.00 0.00 5.01
2759 4740 2.903784 AGATTACTGTAGTGTGGGTGCA 59.096 45.455 0.00 0.00 0.00 4.57
2760 4741 2.831685 TTACTGTAGTGTGGGTGCAG 57.168 50.000 0.00 0.00 34.14 4.41
2761 4742 2.003937 TACTGTAGTGTGGGTGCAGA 57.996 50.000 0.00 0.00 32.46 4.26
2762 4743 1.128200 ACTGTAGTGTGGGTGCAGAA 58.872 50.000 0.00 0.00 32.46 3.02
2763 4744 1.070758 ACTGTAGTGTGGGTGCAGAAG 59.929 52.381 0.00 0.00 32.46 2.85
2764 4745 1.344438 CTGTAGTGTGGGTGCAGAAGA 59.656 52.381 0.00 0.00 29.74 2.87
2765 4746 1.765904 TGTAGTGTGGGTGCAGAAGAA 59.234 47.619 0.00 0.00 0.00 2.52
2766 4747 2.371841 TGTAGTGTGGGTGCAGAAGAAT 59.628 45.455 0.00 0.00 0.00 2.40
2767 4748 1.901591 AGTGTGGGTGCAGAAGAATG 58.098 50.000 0.00 0.00 0.00 2.67
2768 4749 1.143684 AGTGTGGGTGCAGAAGAATGT 59.856 47.619 0.00 0.00 0.00 2.71
2769 4750 1.267806 GTGTGGGTGCAGAAGAATGTG 59.732 52.381 0.00 0.00 0.00 3.21
2770 4751 1.142667 TGTGGGTGCAGAAGAATGTGA 59.857 47.619 0.00 0.00 0.00 3.58
2771 4752 2.229792 GTGGGTGCAGAAGAATGTGAA 58.770 47.619 0.00 0.00 0.00 3.18
2772 4753 2.030805 GTGGGTGCAGAAGAATGTGAAC 60.031 50.000 0.00 0.00 0.00 3.18
2773 4754 2.229792 GGGTGCAGAAGAATGTGAACA 58.770 47.619 0.00 0.00 29.71 3.18
2774 4755 2.821969 GGGTGCAGAAGAATGTGAACAT 59.178 45.455 0.00 0.00 38.41 2.71
2776 4757 4.262164 GGGTGCAGAAGAATGTGAACATTT 60.262 41.667 9.90 0.00 45.72 2.32
2777 4758 5.291971 GGTGCAGAAGAATGTGAACATTTT 58.708 37.500 9.90 1.98 45.72 1.82
2778 4759 5.754890 GGTGCAGAAGAATGTGAACATTTTT 59.245 36.000 9.90 10.32 45.72 1.94
2851 4832 9.541143 TTCTGATCAATTTTAAAAACCTTGTCC 57.459 29.630 4.44 3.42 0.00 4.02
2852 4833 8.700051 TCTGATCAATTTTAAAAACCTTGTCCA 58.300 29.630 4.44 7.04 0.00 4.02
2853 4834 9.323985 CTGATCAATTTTAAAAACCTTGTCCAA 57.676 29.630 4.44 0.00 0.00 3.53
2854 4835 9.844257 TGATCAATTTTAAAAACCTTGTCCAAT 57.156 25.926 4.44 0.00 0.00 3.16
2865 4846 7.931578 AAACCTTGTCCAATAATATCGAACA 57.068 32.000 0.00 0.00 0.00 3.18
2866 4847 7.931578 AACCTTGTCCAATAATATCGAACAA 57.068 32.000 0.00 0.00 0.00 2.83
2867 4848 7.316544 ACCTTGTCCAATAATATCGAACAAC 57.683 36.000 0.00 0.00 0.00 3.32
2868 4849 6.882140 ACCTTGTCCAATAATATCGAACAACA 59.118 34.615 0.00 0.00 0.00 3.33
2869 4850 7.556275 ACCTTGTCCAATAATATCGAACAACAT 59.444 33.333 0.00 0.00 0.00 2.71
2870 4851 8.405531 CCTTGTCCAATAATATCGAACAACATT 58.594 33.333 0.00 0.00 0.00 2.71
2871 4852 9.787532 CTTGTCCAATAATATCGAACAACATTT 57.212 29.630 0.00 0.00 0.00 2.32
2872 4853 9.566530 TTGTCCAATAATATCGAACAACATTTG 57.433 29.630 0.00 0.00 0.00 2.32
2873 4854 8.951243 TGTCCAATAATATCGAACAACATTTGA 58.049 29.630 0.00 0.00 0.00 2.69
2874 4855 9.781834 GTCCAATAATATCGAACAACATTTGAA 57.218 29.630 0.00 0.00 0.00 2.69
2884 4865 9.743057 ATCGAACAACATTTGAAAACTTTATGA 57.257 25.926 0.00 0.00 0.00 2.15
2885 4866 9.574458 TCGAACAACATTTGAAAACTTTATGAA 57.426 25.926 0.00 0.00 0.00 2.57
2947 4928 8.768957 TGTGAACATTTTTGAAATTCTGAACA 57.231 26.923 0.00 0.00 0.00 3.18
2948 4929 9.212641 TGTGAACATTTTTGAAATTCTGAACAA 57.787 25.926 0.00 0.00 0.00 2.83
2979 4960 8.405531 ACATTATGAATAGTGTTGAAAATCCCG 58.594 33.333 0.00 0.00 30.27 5.14
2980 4961 8.620416 CATTATGAATAGTGTTGAAAATCCCGA 58.380 33.333 0.00 0.00 0.00 5.14
2981 4962 8.568676 TTATGAATAGTGTTGAAAATCCCGAA 57.431 30.769 0.00 0.00 0.00 4.30
2982 4963 6.249035 TGAATAGTGTTGAAAATCCCGAAC 57.751 37.500 0.00 0.00 0.00 3.95
2983 4964 5.765677 TGAATAGTGTTGAAAATCCCGAACA 59.234 36.000 0.00 0.00 0.00 3.18
2984 4965 6.432783 TGAATAGTGTTGAAAATCCCGAACAT 59.567 34.615 0.00 0.00 31.35 2.71
2985 4966 6.834168 ATAGTGTTGAAAATCCCGAACATT 57.166 33.333 0.00 0.00 31.35 2.71
2986 4967 5.529581 AGTGTTGAAAATCCCGAACATTT 57.470 34.783 0.00 0.00 31.35 2.32
2987 4968 5.912892 AGTGTTGAAAATCCCGAACATTTT 58.087 33.333 0.00 0.00 36.38 1.82
2988 4969 6.345298 AGTGTTGAAAATCCCGAACATTTTT 58.655 32.000 0.00 0.00 34.30 1.94
3094 5075 8.755696 TGTCATTTTTATTAAAGTGGCATCAC 57.244 30.769 3.27 0.00 39.63 3.06
3108 5089 6.630444 GTGGCATCACTCTTATGAAATCAT 57.370 37.500 1.01 1.01 40.58 2.45
3109 5090 6.436261 GTGGCATCACTCTTATGAAATCATG 58.564 40.000 6.17 0.00 40.58 3.07
3110 5091 6.261603 GTGGCATCACTCTTATGAAATCATGA 59.738 38.462 0.00 0.00 40.58 3.07
3111 5092 7.002276 TGGCATCACTCTTATGAAATCATGAT 58.998 34.615 1.18 1.18 37.15 2.45
3112 5093 7.504574 TGGCATCACTCTTATGAAATCATGATT 59.495 33.333 15.36 15.36 37.15 2.57
3113 5094 8.358148 GGCATCACTCTTATGAAATCATGATTT 58.642 33.333 29.31 29.31 43.14 2.17
3129 5110 8.997621 ATCATGATTTCTTTTGGTGAAGAATG 57.002 30.769 1.18 0.00 43.15 2.67
3130 5111 7.380536 TCATGATTTCTTTTGGTGAAGAATGG 58.619 34.615 0.00 0.00 43.15 3.16
3131 5112 6.975196 TGATTTCTTTTGGTGAAGAATGGA 57.025 33.333 1.39 0.00 43.15 3.41
3132 5113 7.358770 TGATTTCTTTTGGTGAAGAATGGAA 57.641 32.000 1.39 0.00 43.15 3.53
3133 5114 7.790027 TGATTTCTTTTGGTGAAGAATGGAAA 58.210 30.769 1.39 0.00 43.15 3.13
3134 5115 7.710475 TGATTTCTTTTGGTGAAGAATGGAAAC 59.290 33.333 1.39 0.00 43.15 2.78
3135 5116 6.537453 TTCTTTTGGTGAAGAATGGAAACA 57.463 33.333 0.00 0.00 39.90 2.83
3136 5117 6.537453 TCTTTTGGTGAAGAATGGAAACAA 57.463 33.333 0.00 0.00 35.72 2.83
3137 5118 6.940739 TCTTTTGGTGAAGAATGGAAACAAA 58.059 32.000 0.00 0.00 35.72 2.83
3138 5119 7.563906 TCTTTTGGTGAAGAATGGAAACAAAT 58.436 30.769 0.00 0.00 35.72 2.32
3139 5120 8.700051 TCTTTTGGTGAAGAATGGAAACAAATA 58.300 29.630 0.00 0.00 35.72 1.40
3165 5146 7.883229 AAAAAGAAGCAGAAAAGACGAAAAA 57.117 28.000 0.00 0.00 0.00 1.94
3166 5147 7.511809 AAAAGAAGCAGAAAAGACGAAAAAG 57.488 32.000 0.00 0.00 0.00 2.27
3167 5148 5.175090 AGAAGCAGAAAAGACGAAAAAGG 57.825 39.130 0.00 0.00 0.00 3.11
3168 5149 4.881850 AGAAGCAGAAAAGACGAAAAAGGA 59.118 37.500 0.00 0.00 0.00 3.36
3169 5150 5.357032 AGAAGCAGAAAAGACGAAAAAGGAA 59.643 36.000 0.00 0.00 0.00 3.36
3170 5151 5.576447 AGCAGAAAAGACGAAAAAGGAAA 57.424 34.783 0.00 0.00 0.00 3.13
3171 5152 5.961272 AGCAGAAAAGACGAAAAAGGAAAA 58.039 33.333 0.00 0.00 0.00 2.29
3172 5153 6.573434 AGCAGAAAAGACGAAAAAGGAAAAT 58.427 32.000 0.00 0.00 0.00 1.82
3173 5154 7.712797 AGCAGAAAAGACGAAAAAGGAAAATA 58.287 30.769 0.00 0.00 0.00 1.40
3174 5155 8.194769 AGCAGAAAAGACGAAAAAGGAAAATAA 58.805 29.630 0.00 0.00 0.00 1.40
3175 5156 8.978539 GCAGAAAAGACGAAAAAGGAAAATAAT 58.021 29.630 0.00 0.00 0.00 1.28
3216 5197 9.676195 AACAAAAGAAACAAACAAAAAGAATGG 57.324 25.926 0.00 0.00 0.00 3.16
3217 5198 8.845227 ACAAAAGAAACAAACAAAAAGAATGGT 58.155 25.926 0.00 0.00 0.00 3.55
3218 5199 9.328721 CAAAAGAAACAAACAAAAAGAATGGTC 57.671 29.630 0.00 0.00 0.00 4.02
3219 5200 7.609760 AAGAAACAAACAAAAAGAATGGTCC 57.390 32.000 0.00 0.00 0.00 4.46
3220 5201 6.706295 AGAAACAAACAAAAAGAATGGTCCA 58.294 32.000 0.00 0.00 0.00 4.02
3221 5202 6.818142 AGAAACAAACAAAAAGAATGGTCCAG 59.182 34.615 0.00 0.00 0.00 3.86
3222 5203 5.022282 ACAAACAAAAAGAATGGTCCAGG 57.978 39.130 0.00 0.00 0.00 4.45
3223 5204 4.141733 ACAAACAAAAAGAATGGTCCAGGG 60.142 41.667 0.00 0.00 0.00 4.45
3224 5205 1.970640 ACAAAAAGAATGGTCCAGGGC 59.029 47.619 0.00 0.00 0.00 5.19
3225 5206 2.250924 CAAAAAGAATGGTCCAGGGCT 58.749 47.619 0.00 0.00 0.00 5.19
3226 5207 2.222227 AAAAGAATGGTCCAGGGCTC 57.778 50.000 0.00 0.00 0.00 4.70
3227 5208 0.035056 AAAGAATGGTCCAGGGCTCG 60.035 55.000 0.00 0.00 0.00 5.03
3228 5209 2.514824 GAATGGTCCAGGGCTCGC 60.515 66.667 0.00 0.00 0.00 5.03
3229 5210 3.329542 GAATGGTCCAGGGCTCGCA 62.330 63.158 0.00 0.00 0.00 5.10
3230 5211 3.628646 AATGGTCCAGGGCTCGCAC 62.629 63.158 0.00 0.00 0.00 5.34
3232 5213 4.767255 GGTCCAGGGCTCGCACTG 62.767 72.222 14.05 14.05 46.40 3.66
3245 5226 4.033990 CTCGCACTGAGTAAATGCTAGA 57.966 45.455 0.00 0.00 40.03 2.43
3246 5227 4.424626 CTCGCACTGAGTAAATGCTAGAA 58.575 43.478 0.00 0.00 40.03 2.10
3247 5228 4.424626 TCGCACTGAGTAAATGCTAGAAG 58.575 43.478 0.00 0.00 37.20 2.85
3248 5229 4.082190 TCGCACTGAGTAAATGCTAGAAGT 60.082 41.667 0.00 0.00 37.20 3.01
3249 5230 4.032217 CGCACTGAGTAAATGCTAGAAGTG 59.968 45.833 0.00 0.00 37.20 3.16
3250 5231 4.331168 GCACTGAGTAAATGCTAGAAGTGG 59.669 45.833 0.00 0.00 36.40 4.00
3251 5232 4.872691 CACTGAGTAAATGCTAGAAGTGGG 59.127 45.833 0.00 0.00 0.00 4.61
3252 5233 3.873910 TGAGTAAATGCTAGAAGTGGGC 58.126 45.455 0.00 0.00 0.00 5.36
3253 5234 3.206964 GAGTAAATGCTAGAAGTGGGCC 58.793 50.000 0.00 0.00 0.00 5.80
3254 5235 1.940613 GTAAATGCTAGAAGTGGGCCG 59.059 52.381 0.00 0.00 0.00 6.13
3255 5236 0.618458 AAATGCTAGAAGTGGGCCGA 59.382 50.000 0.00 0.00 0.00 5.54
3256 5237 0.107654 AATGCTAGAAGTGGGCCGAC 60.108 55.000 10.38 10.38 0.00 4.79
3257 5238 1.972660 ATGCTAGAAGTGGGCCGACC 61.973 60.000 15.08 0.00 40.81 4.79
3267 5248 3.555967 GGCCGACCCATCTCTCAT 58.444 61.111 0.00 0.00 0.00 2.90
3268 5249 1.369321 GGCCGACCCATCTCTCATC 59.631 63.158 0.00 0.00 0.00 2.92
3269 5250 1.006805 GCCGACCCATCTCTCATCG 60.007 63.158 0.00 0.00 0.00 3.84
3270 5251 1.006805 CCGACCCATCTCTCATCGC 60.007 63.158 0.00 0.00 0.00 4.58
3271 5252 1.459455 CCGACCCATCTCTCATCGCT 61.459 60.000 0.00 0.00 0.00 4.93
3272 5253 0.039617 CGACCCATCTCTCATCGCTC 60.040 60.000 0.00 0.00 0.00 5.03
3273 5254 1.035923 GACCCATCTCTCATCGCTCA 58.964 55.000 0.00 0.00 0.00 4.26
3274 5255 0.749649 ACCCATCTCTCATCGCTCAC 59.250 55.000 0.00 0.00 0.00 3.51
3275 5256 0.749049 CCCATCTCTCATCGCTCACA 59.251 55.000 0.00 0.00 0.00 3.58
3276 5257 1.343789 CCCATCTCTCATCGCTCACAT 59.656 52.381 0.00 0.00 0.00 3.21
3277 5258 2.609984 CCCATCTCTCATCGCTCACATC 60.610 54.545 0.00 0.00 0.00 3.06
3278 5259 2.317684 CATCTCTCATCGCTCACATCG 58.682 52.381 0.00 0.00 0.00 3.84
3279 5260 1.668419 TCTCTCATCGCTCACATCGA 58.332 50.000 0.00 0.00 40.45 3.59
3280 5261 2.225467 TCTCTCATCGCTCACATCGAT 58.775 47.619 0.00 0.00 46.27 3.59
3283 5264 3.927942 ATCGCTCACATCGATGCG 58.072 55.556 25.11 21.52 44.00 4.73
3285 5266 3.388134 CGCTCACATCGATGCGTT 58.612 55.556 25.11 2.98 42.93 4.84
3286 5267 1.709760 CGCTCACATCGATGCGTTT 59.290 52.632 25.11 2.57 42.93 3.60
3287 5268 0.584785 CGCTCACATCGATGCGTTTG 60.585 55.000 25.11 15.46 42.93 2.93
3288 5269 0.443869 GCTCACATCGATGCGTTTGT 59.556 50.000 25.11 2.96 0.00 2.83
3289 5270 1.787989 GCTCACATCGATGCGTTTGTG 60.788 52.381 25.11 15.99 40.41 3.33
3290 5271 1.460743 CTCACATCGATGCGTTTGTGT 59.539 47.619 25.11 1.31 40.19 3.72
3291 5272 1.194322 TCACATCGATGCGTTTGTGTG 59.806 47.619 25.11 14.54 40.19 3.82
3292 5273 1.194322 CACATCGATGCGTTTGTGTGA 59.806 47.619 25.11 0.00 39.30 3.58
3293 5274 1.870402 ACATCGATGCGTTTGTGTGAA 59.130 42.857 25.11 0.00 0.00 3.18
3294 5275 2.483877 ACATCGATGCGTTTGTGTGAAT 59.516 40.909 25.11 0.00 0.00 2.57
3295 5276 2.873170 TCGATGCGTTTGTGTGAATC 57.127 45.000 0.00 0.00 0.00 2.52
3296 5277 1.125930 TCGATGCGTTTGTGTGAATCG 59.874 47.619 0.00 0.00 38.53 3.34
3297 5278 1.136363 CGATGCGTTTGTGTGAATCGT 60.136 47.619 0.00 0.00 33.92 3.73
3298 5279 2.661709 CGATGCGTTTGTGTGAATCGTT 60.662 45.455 0.00 0.00 33.92 3.85
3299 5280 2.098215 TGCGTTTGTGTGAATCGTTG 57.902 45.000 0.00 0.00 0.00 4.10
3300 5281 1.666189 TGCGTTTGTGTGAATCGTTGA 59.334 42.857 0.00 0.00 0.00 3.18
3301 5282 2.034076 GCGTTTGTGTGAATCGTTGAC 58.966 47.619 0.00 0.00 0.00 3.18
3302 5283 2.537931 GCGTTTGTGTGAATCGTTGACA 60.538 45.455 0.00 0.00 0.00 3.58
3303 5284 3.675481 CGTTTGTGTGAATCGTTGACAA 58.325 40.909 0.00 0.00 0.00 3.18
3304 5285 4.278858 CGTTTGTGTGAATCGTTGACAAT 58.721 39.130 0.00 0.00 0.00 2.71
3305 5286 4.732923 CGTTTGTGTGAATCGTTGACAATT 59.267 37.500 0.00 0.00 0.00 2.32
3306 5287 5.108780 CGTTTGTGTGAATCGTTGACAATTC 60.109 40.000 0.00 0.00 33.42 2.17
3307 5288 5.491635 TTGTGTGAATCGTTGACAATTCA 57.508 34.783 0.00 0.00 39.06 2.57
3308 5289 5.491635 TGTGTGAATCGTTGACAATTCAA 57.508 34.783 4.65 0.00 41.99 2.69
3318 5299 3.332761 TGACAATTCAACACAACGAGC 57.667 42.857 0.00 0.00 0.00 5.03
3319 5300 2.286125 TGACAATTCAACACAACGAGCG 60.286 45.455 0.00 0.00 0.00 5.03
3320 5301 1.002900 ACAATTCAACACAACGAGCGG 60.003 47.619 0.00 0.00 0.00 5.52
3321 5302 1.002900 CAATTCAACACAACGAGCGGT 60.003 47.619 0.00 0.00 0.00 5.68
3322 5303 0.586319 ATTCAACACAACGAGCGGTG 59.414 50.000 6.35 6.35 40.78 4.94
3323 5304 0.460459 TTCAACACAACGAGCGGTGA 60.460 50.000 15.52 0.00 38.38 4.02
3324 5305 0.460459 TCAACACAACGAGCGGTGAA 60.460 50.000 15.52 0.00 38.38 3.18
3325 5306 0.586319 CAACACAACGAGCGGTGAAT 59.414 50.000 15.52 0.00 38.38 2.57
3326 5307 1.795872 CAACACAACGAGCGGTGAATA 59.204 47.619 15.52 0.00 38.38 1.75
3327 5308 1.710013 ACACAACGAGCGGTGAATAG 58.290 50.000 15.52 4.21 38.38 1.73
3328 5309 0.999406 CACAACGAGCGGTGAATAGG 59.001 55.000 15.52 0.00 37.18 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.336148 ACTGGTTTCGTTGCATGCATG 60.336 47.619 23.37 22.70 0.00 4.06
60 61 0.961019 ACTGGTTTCGTTGCATGCAT 59.039 45.000 23.37 0.00 0.00 3.96
61 62 0.030504 CACTGGTTTCGTTGCATGCA 59.969 50.000 18.46 18.46 0.00 3.96
84 85 2.751436 TTCCGGGACCCGTACGAG 60.751 66.667 30.60 15.53 46.80 4.18
141 142 6.696441 TGTAAAAGCGTAAAGAAAGGGAAA 57.304 33.333 0.00 0.00 0.00 3.13
203 204 5.631119 AGTACTTTAGTTGCCACTTCCATT 58.369 37.500 0.00 0.00 34.06 3.16
207 208 9.250624 CATATAGAGTACTTTAGTTGCCACTTC 57.749 37.037 0.00 0.00 34.06 3.01
222 223 7.017645 CGGCAATTGCAAATCATATAGAGTAC 58.982 38.462 30.32 6.99 44.36 2.73
224 225 5.563475 GCGGCAATTGCAAATCATATAGAGT 60.563 40.000 30.32 0.00 44.36 3.24
225 226 4.855388 GCGGCAATTGCAAATCATATAGAG 59.145 41.667 30.32 7.07 44.36 2.43
226 227 4.277921 TGCGGCAATTGCAAATCATATAGA 59.722 37.500 30.32 0.00 44.36 1.98
227 228 4.548494 TGCGGCAATTGCAAATCATATAG 58.452 39.130 30.32 9.73 44.36 1.31
245 246 1.565156 TAGCGTTTCTTGCACTGCGG 61.565 55.000 0.00 0.00 33.85 5.69
269 270 3.749609 TCGGAAAGAAAGAATCGGGTTTC 59.250 43.478 0.00 0.00 33.59 2.78
272 273 2.696506 GTCGGAAAGAAAGAATCGGGT 58.303 47.619 0.00 0.00 0.00 5.28
274 275 2.599082 CTCGTCGGAAAGAAAGAATCGG 59.401 50.000 0.00 0.00 0.00 4.18
275 276 3.499048 TCTCGTCGGAAAGAAAGAATCG 58.501 45.455 0.00 0.00 0.00 3.34
276 277 4.924462 AGTTCTCGTCGGAAAGAAAGAATC 59.076 41.667 5.85 0.00 36.17 2.52
277 278 4.884247 AGTTCTCGTCGGAAAGAAAGAAT 58.116 39.130 5.85 0.00 36.17 2.40
278 279 4.317671 AGTTCTCGTCGGAAAGAAAGAA 57.682 40.909 5.85 0.00 33.53 2.52
280 281 6.034044 CAGAATAGTTCTCGTCGGAAAGAAAG 59.966 42.308 5.85 0.00 38.11 2.62
281 282 5.862323 CAGAATAGTTCTCGTCGGAAAGAAA 59.138 40.000 5.85 0.00 38.11 2.52
282 283 5.048224 ACAGAATAGTTCTCGTCGGAAAGAA 60.048 40.000 0.00 1.16 38.11 2.52
283 284 4.458295 ACAGAATAGTTCTCGTCGGAAAGA 59.542 41.667 0.00 0.00 38.11 2.52
284 285 4.734917 ACAGAATAGTTCTCGTCGGAAAG 58.265 43.478 0.00 0.00 38.11 2.62
285 286 4.778534 ACAGAATAGTTCTCGTCGGAAA 57.221 40.909 0.00 0.00 38.11 3.13
286 287 5.587443 TCATACAGAATAGTTCTCGTCGGAA 59.413 40.000 0.00 0.00 38.11 4.30
287 288 5.121105 TCATACAGAATAGTTCTCGTCGGA 58.879 41.667 0.00 0.00 38.11 4.55
288 289 5.419760 TCATACAGAATAGTTCTCGTCGG 57.580 43.478 0.00 0.00 38.11 4.79
289 290 6.659776 TGATCATACAGAATAGTTCTCGTCG 58.340 40.000 0.00 0.00 38.11 5.12
290 291 7.915923 TGTTGATCATACAGAATAGTTCTCGTC 59.084 37.037 0.00 0.00 38.11 4.20
294 295 7.443575 GGCATGTTGATCATACAGAATAGTTCT 59.556 37.037 13.58 0.00 36.23 3.01
295 296 7.227314 TGGCATGTTGATCATACAGAATAGTTC 59.773 37.037 13.58 0.00 34.67 3.01
296 297 7.012704 GTGGCATGTTGATCATACAGAATAGTT 59.987 37.037 13.58 0.00 34.67 2.24
300 333 5.443283 AGTGGCATGTTGATCATACAGAAT 58.557 37.500 13.58 0.00 34.67 2.40
301 334 4.847198 AGTGGCATGTTGATCATACAGAA 58.153 39.130 13.58 0.00 34.67 3.02
303 336 4.449131 AGAGTGGCATGTTGATCATACAG 58.551 43.478 13.58 8.70 34.67 2.74
305 338 3.812053 GGAGAGTGGCATGTTGATCATAC 59.188 47.826 0.00 0.00 34.67 2.39
307 340 2.240414 TGGAGAGTGGCATGTTGATCAT 59.760 45.455 0.00 0.00 37.22 2.45
314 347 1.524002 CCGATGGAGAGTGGCATGT 59.476 57.895 0.00 0.00 0.00 3.21
316 349 2.507944 GCCGATGGAGAGTGGCAT 59.492 61.111 0.00 0.00 46.76 4.40
339 377 7.725844 AGAAATATCTTAGCACCATTTTAGGGG 59.274 37.037 0.00 0.00 29.15 4.79
354 392 8.869897 CAAGTTGCAAGACGTAGAAATATCTTA 58.130 33.333 0.00 0.00 37.10 2.10
383 421 7.040686 AGTGCATAAAGAATAGTTCACCGTTTT 60.041 33.333 0.00 0.00 0.00 2.43
394 432 5.973651 TCGCTCAAGTGCATAAAGAATAG 57.026 39.130 0.00 0.00 0.00 1.73
426 464 5.798132 AGATCCTGAATTCATGCGCTATTA 58.202 37.500 8.96 0.00 0.00 0.98
500 573 7.095857 GCCAAAACGTTGACATGAAATTCAATA 60.096 33.333 0.00 0.00 36.83 1.90
501 574 6.292811 GCCAAAACGTTGACATGAAATTCAAT 60.293 34.615 0.00 0.00 36.83 2.57
512 585 1.313812 AACCGGCCAAAACGTTGACA 61.314 50.000 0.00 0.00 36.83 3.58
515 588 1.655959 CGAACCGGCCAAAACGTTG 60.656 57.895 0.00 0.00 34.25 4.10
528 601 0.451783 AATCTGCATTTCGGCGAACC 59.548 50.000 23.64 13.88 36.28 3.62
533 606 3.549070 GTGATTTCAATCTGCATTTCGGC 59.451 43.478 1.35 0.00 36.39 5.54
544 617 8.252964 ACTACCGACTTTTAGTGATTTCAATC 57.747 34.615 0.00 0.00 35.97 2.67
547 620 9.199982 CTAAACTACCGACTTTTAGTGATTTCA 57.800 33.333 0.00 0.00 31.07 2.69
548 621 9.201127 ACTAAACTACCGACTTTTAGTGATTTC 57.799 33.333 5.41 0.00 42.02 2.17
549 622 9.551734 AACTAAACTACCGACTTTTAGTGATTT 57.448 29.630 6.71 0.00 42.52 2.17
550 623 8.985805 CAACTAAACTACCGACTTTTAGTGATT 58.014 33.333 6.71 0.00 42.52 2.57
551 624 8.362639 TCAACTAAACTACCGACTTTTAGTGAT 58.637 33.333 6.71 0.00 42.52 3.06
552 625 7.715657 TCAACTAAACTACCGACTTTTAGTGA 58.284 34.615 6.71 4.88 42.52 3.41
553 626 7.935338 TCAACTAAACTACCGACTTTTAGTG 57.065 36.000 6.71 3.12 42.52 2.74
568 641 8.149973 TCGGGCAGAATTATAATCAACTAAAC 57.850 34.615 0.00 0.00 0.00 2.01
581 654 6.928979 TCGAAAATATTTCGGGCAGAATTA 57.071 33.333 20.94 2.78 41.78 1.40
583 656 5.449999 GGTTCGAAAATATTTCGGGCAGAAT 60.450 40.000 20.94 0.00 41.78 2.40
586 659 3.488553 GGGTTCGAAAATATTTCGGGCAG 60.489 47.826 20.94 0.00 41.78 4.85
589 662 4.705337 TTGGGTTCGAAAATATTTCGGG 57.295 40.909 20.94 4.33 41.78 5.14
592 665 8.027189 AGTAGCTTTTGGGTTCGAAAATATTTC 58.973 33.333 0.00 0.00 0.00 2.17
630 704 8.912988 TCCTTTCAGTCAAAACATTTCAGTTAT 58.087 29.630 0.00 0.00 0.00 1.89
631 705 8.287439 TCCTTTCAGTCAAAACATTTCAGTTA 57.713 30.769 0.00 0.00 0.00 2.24
632 706 7.169158 TCCTTTCAGTCAAAACATTTCAGTT 57.831 32.000 0.00 0.00 0.00 3.16
633 707 6.773976 TCCTTTCAGTCAAAACATTTCAGT 57.226 33.333 0.00 0.00 0.00 3.41
634 708 8.652810 ATTTCCTTTCAGTCAAAACATTTCAG 57.347 30.769 0.00 0.00 0.00 3.02
635 709 8.256605 TGATTTCCTTTCAGTCAAAACATTTCA 58.743 29.630 0.00 0.00 0.00 2.69
636 710 8.647143 TGATTTCCTTTCAGTCAAAACATTTC 57.353 30.769 0.00 0.00 0.00 2.17
637 711 8.652810 CTGATTTCCTTTCAGTCAAAACATTT 57.347 30.769 0.00 0.00 36.64 2.32
648 722 4.301628 GCACCAAACTGATTTCCTTTCAG 58.698 43.478 0.00 0.00 44.95 3.02
649 723 3.069443 GGCACCAAACTGATTTCCTTTCA 59.931 43.478 0.00 0.00 0.00 2.69
650 724 3.321968 AGGCACCAAACTGATTTCCTTTC 59.678 43.478 0.00 0.00 0.00 2.62
651 725 3.308401 AGGCACCAAACTGATTTCCTTT 58.692 40.909 0.00 0.00 0.00 3.11
652 726 2.962859 AGGCACCAAACTGATTTCCTT 58.037 42.857 0.00 0.00 0.00 3.36
653 727 2.683211 AGGCACCAAACTGATTTCCT 57.317 45.000 0.00 0.00 0.00 3.36
654 728 2.492088 GGTAGGCACCAAACTGATTTCC 59.508 50.000 1.86 0.00 45.04 3.13
655 729 3.850122 GGTAGGCACCAAACTGATTTC 57.150 47.619 1.86 0.00 45.04 2.17
666 740 2.790433 TCAGTCATTTTGGTAGGCACC 58.210 47.619 0.00 0.00 46.00 5.01
667 741 4.846779 TTTCAGTCATTTTGGTAGGCAC 57.153 40.909 0.00 0.00 0.00 5.01
668 742 6.041409 TGAAATTTCAGTCATTTTGGTAGGCA 59.959 34.615 16.91 0.00 32.50 4.75
669 743 6.454795 TGAAATTTCAGTCATTTTGGTAGGC 58.545 36.000 16.91 0.00 32.50 3.93
692 766 2.135933 GAGGTTTGTCCGAACTCACTG 58.864 52.381 0.00 0.00 41.99 3.66
698 772 2.234300 TCAGTGAGGTTTGTCCGAAC 57.766 50.000 0.00 0.00 41.99 3.95
715 790 9.748708 CTAAAGAATCATGGTTTTTCACTTTCA 57.251 29.630 5.80 0.00 0.00 2.69
774 849 4.733523 GCTTGTCCTGTGGTTTTGTACAAG 60.734 45.833 8.56 0.00 43.14 3.16
776 851 2.685897 GCTTGTCCTGTGGTTTTGTACA 59.314 45.455 0.00 0.00 0.00 2.90
784 859 1.149174 CTGTGGCTTGTCCTGTGGT 59.851 57.895 0.00 0.00 35.26 4.16
785 860 2.263741 GCTGTGGCTTGTCCTGTGG 61.264 63.158 0.00 0.00 35.26 4.17
786 861 3.348236 GCTGTGGCTTGTCCTGTG 58.652 61.111 0.00 0.00 35.26 3.66
807 882 7.060979 CCATTTGATTGACTGTGTTACATTTCG 59.939 37.037 0.00 0.00 0.00 3.46
813 888 6.555315 GGATCCATTTGATTGACTGTGTTAC 58.445 40.000 6.95 0.00 32.41 2.50
814 889 5.353956 CGGATCCATTTGATTGACTGTGTTA 59.646 40.000 13.41 0.00 32.41 2.41
831 906 0.982852 ATCACCTGCTTCCGGATCCA 60.983 55.000 13.41 4.50 0.00 3.41
839 914 7.416964 AGGATATACTATCATCACCTGCTTC 57.583 40.000 0.00 0.00 0.00 3.86
854 929 4.908481 GGTTCAGGGGAAGAAGGATATACT 59.092 45.833 0.00 0.00 32.62 2.12
862 937 3.559384 GGTGTTAGGTTCAGGGGAAGAAG 60.559 52.174 0.00 0.00 32.62 2.85
905 2672 0.109643 AAAACGGCGCGGGAAAATAC 60.110 50.000 19.75 0.00 0.00 1.89
938 2705 2.031157 GTGTTGCAAGTTAAGGCGTCAT 60.031 45.455 0.00 0.00 0.00 3.06
953 2720 3.383761 CATTTTGAGTTGGAGGTGTTGC 58.616 45.455 0.00 0.00 0.00 4.17
973 2740 5.935945 TCCTTCTGTTGTTCTAACATTCCA 58.064 37.500 0.00 0.00 38.95 3.53
974 2741 5.106515 GCTCCTTCTGTTGTTCTAACATTCC 60.107 44.000 0.00 0.00 38.95 3.01
975 2742 5.389935 CGCTCCTTCTGTTGTTCTAACATTC 60.390 44.000 0.00 0.00 38.95 2.67
976 2743 4.452455 CGCTCCTTCTGTTGTTCTAACATT 59.548 41.667 0.00 0.00 38.95 2.71
978 2745 3.069016 TCGCTCCTTCTGTTGTTCTAACA 59.931 43.478 0.00 0.00 37.08 2.41
979 2746 3.650139 TCGCTCCTTCTGTTGTTCTAAC 58.350 45.455 0.00 0.00 0.00 2.34
980 2747 4.245660 CATCGCTCCTTCTGTTGTTCTAA 58.754 43.478 0.00 0.00 0.00 2.10
988 2755 1.816835 TCGTAACATCGCTCCTTCTGT 59.183 47.619 0.00 0.00 0.00 3.41
989 2756 2.186076 GTCGTAACATCGCTCCTTCTG 58.814 52.381 0.00 0.00 0.00 3.02
990 2757 1.816835 TGTCGTAACATCGCTCCTTCT 59.183 47.619 0.00 0.00 0.00 2.85
991 2758 2.273370 TGTCGTAACATCGCTCCTTC 57.727 50.000 0.00 0.00 0.00 3.46
992 2759 2.961526 ATGTCGTAACATCGCTCCTT 57.038 45.000 0.00 0.00 42.59 3.36
1015 2782 2.124403 GCAGATGGCTCCCCACAG 60.124 66.667 0.00 0.00 45.77 3.66
1120 2896 2.202453 GCCGTCTTCCTCGTCGTC 60.202 66.667 0.00 0.00 0.00 4.20
1121 2897 4.099170 CGCCGTCTTCCTCGTCGT 62.099 66.667 0.00 0.00 0.00 4.34
1122 2898 4.831307 CCGCCGTCTTCCTCGTCG 62.831 72.222 0.00 0.00 0.00 5.12
1142 2918 2.672307 AGAAGGACGACGAGCCGT 60.672 61.111 0.00 0.21 46.43 5.68
1353 3132 2.830923 AGAGATATCTTGATCTGCGGGG 59.169 50.000 6.70 0.00 36.27 5.73
1692 3471 1.811860 GTAGAAACTCCCGGCGCTA 59.188 57.895 7.64 0.00 0.00 4.26
1846 3625 7.171848 ACACATAAAATGCGTGTAGTAAGTTCA 59.828 33.333 0.00 0.00 41.90 3.18
1917 3696 2.046023 TGCACCTTCCCGATGCTG 60.046 61.111 0.00 0.00 40.13 4.41
2082 3861 3.633116 CCGAACCCCACTTCCCGT 61.633 66.667 0.00 0.00 0.00 5.28
2334 4113 0.883833 CGCTGACAAAAAGCCCTCAT 59.116 50.000 0.00 0.00 37.37 2.90
2573 4554 0.673333 TGTGCGGACTGCTGGTATTG 60.673 55.000 8.99 0.00 46.63 1.90
2574 4555 0.391661 CTGTGCGGACTGCTGGTATT 60.392 55.000 8.99 0.00 46.63 1.89
2575 4556 1.219124 CTGTGCGGACTGCTGGTAT 59.781 57.895 8.99 0.00 46.63 2.73
2576 4557 1.877576 CTCTGTGCGGACTGCTGGTA 61.878 60.000 8.99 0.00 46.63 3.25
2577 4558 3.231889 CTCTGTGCGGACTGCTGGT 62.232 63.158 8.99 0.00 46.63 4.00
2578 4559 2.433838 CTCTGTGCGGACTGCTGG 60.434 66.667 8.99 0.00 46.63 4.85
2579 4560 3.117171 GCTCTGTGCGGACTGCTG 61.117 66.667 8.99 5.62 46.63 4.41
2580 4561 3.619767 TGCTCTGTGCGGACTGCT 61.620 61.111 8.99 0.00 46.63 4.24
2607 4588 1.176527 TGCTCCAATTGGCTTACTGC 58.823 50.000 20.33 15.22 41.94 4.40
2608 4589 2.100252 CCATGCTCCAATTGGCTTACTG 59.900 50.000 20.33 12.15 34.44 2.74
2609 4590 2.025037 TCCATGCTCCAATTGGCTTACT 60.025 45.455 20.33 0.21 34.44 2.24
2610 4591 2.360165 CTCCATGCTCCAATTGGCTTAC 59.640 50.000 20.33 9.01 34.44 2.34
2611 4592 2.658285 CTCCATGCTCCAATTGGCTTA 58.342 47.619 20.33 8.14 34.44 3.09
2612 4593 1.481871 CTCCATGCTCCAATTGGCTT 58.518 50.000 20.33 4.51 34.44 4.35
2613 4594 1.041447 GCTCCATGCTCCAATTGGCT 61.041 55.000 20.33 1.31 38.95 4.75
2614 4595 1.440476 GCTCCATGCTCCAATTGGC 59.560 57.895 20.33 9.64 38.95 4.52
2615 4596 1.731700 CGCTCCATGCTCCAATTGG 59.268 57.895 19.08 19.08 40.11 3.16
2616 4597 1.065273 GCGCTCCATGCTCCAATTG 59.935 57.895 0.00 0.00 40.11 2.32
2617 4598 0.754217 ATGCGCTCCATGCTCCAATT 60.754 50.000 9.73 0.00 40.11 2.32
2618 4599 0.109153 TATGCGCTCCATGCTCCAAT 59.891 50.000 9.73 0.00 40.11 3.16
2619 4600 0.815213 GTATGCGCTCCATGCTCCAA 60.815 55.000 9.73 0.00 40.11 3.53
2620 4601 1.227645 GTATGCGCTCCATGCTCCA 60.228 57.895 9.73 0.00 40.11 3.86
2621 4602 1.070445 AGTATGCGCTCCATGCTCC 59.930 57.895 9.73 0.00 42.30 4.70
2622 4603 0.531532 ACAGTATGCGCTCCATGCTC 60.532 55.000 9.73 0.00 43.83 4.26
2623 4604 0.812811 CACAGTATGCGCTCCATGCT 60.813 55.000 9.73 0.00 46.15 3.79
2624 4605 1.645455 CACAGTATGCGCTCCATGC 59.355 57.895 9.73 0.00 42.53 4.06
2625 4606 1.645455 GCACAGTATGCGCTCCATG 59.355 57.895 9.73 5.28 46.55 3.66
2626 4607 4.131376 GCACAGTATGCGCTCCAT 57.869 55.556 9.73 0.00 46.55 3.41
2636 4617 8.687242 GGCTATATATAATCTGAGTGCACAGTA 58.313 37.037 21.04 1.70 38.79 2.74
2637 4618 7.398618 AGGCTATATATAATCTGAGTGCACAGT 59.601 37.037 21.04 0.00 38.79 3.55
2638 4619 7.705752 CAGGCTATATATAATCTGAGTGCACAG 59.294 40.741 21.04 8.94 39.02 3.66
2639 4620 7.397192 TCAGGCTATATATAATCTGAGTGCACA 59.603 37.037 21.04 0.00 0.00 4.57
2640 4621 7.776107 TCAGGCTATATATAATCTGAGTGCAC 58.224 38.462 9.40 9.40 0.00 4.57
2641 4622 7.961326 TCAGGCTATATATAATCTGAGTGCA 57.039 36.000 15.32 0.00 0.00 4.57
2653 4634 8.972127 CCACACTACAGTAATCAGGCTATATAT 58.028 37.037 0.00 0.00 0.00 0.86
2654 4635 7.396339 CCCACACTACAGTAATCAGGCTATATA 59.604 40.741 0.00 0.00 0.00 0.86
2655 4636 6.211584 CCCACACTACAGTAATCAGGCTATAT 59.788 42.308 0.00 0.00 0.00 0.86
2656 4637 5.538813 CCCACACTACAGTAATCAGGCTATA 59.461 44.000 0.00 0.00 0.00 1.31
2657 4638 4.345257 CCCACACTACAGTAATCAGGCTAT 59.655 45.833 0.00 0.00 0.00 2.97
2658 4639 3.704566 CCCACACTACAGTAATCAGGCTA 59.295 47.826 0.00 0.00 0.00 3.93
2659 4640 2.501723 CCCACACTACAGTAATCAGGCT 59.498 50.000 0.00 0.00 0.00 4.58
2660 4641 2.420129 CCCCACACTACAGTAATCAGGC 60.420 54.545 0.00 0.00 0.00 4.85
2661 4642 2.838202 ACCCCACACTACAGTAATCAGG 59.162 50.000 0.00 0.00 0.00 3.86
2662 4643 4.253685 CAACCCCACACTACAGTAATCAG 58.746 47.826 0.00 0.00 0.00 2.90
2663 4644 3.649023 ACAACCCCACACTACAGTAATCA 59.351 43.478 0.00 0.00 0.00 2.57
2664 4645 4.020485 AGACAACCCCACACTACAGTAATC 60.020 45.833 0.00 0.00 0.00 1.75
2665 4646 3.908103 AGACAACCCCACACTACAGTAAT 59.092 43.478 0.00 0.00 0.00 1.89
2666 4647 3.311091 AGACAACCCCACACTACAGTAA 58.689 45.455 0.00 0.00 0.00 2.24
2667 4648 2.966915 AGACAACCCCACACTACAGTA 58.033 47.619 0.00 0.00 0.00 2.74
2668 4649 1.802553 AGACAACCCCACACTACAGT 58.197 50.000 0.00 0.00 0.00 3.55
2669 4650 4.345859 TTTAGACAACCCCACACTACAG 57.654 45.455 0.00 0.00 0.00 2.74
2670 4651 4.774660 TTTTAGACAACCCCACACTACA 57.225 40.909 0.00 0.00 0.00 2.74
2734 4715 5.240844 GCACCCACACTACAGTAATCTTTTT 59.759 40.000 0.00 0.00 0.00 1.94
2735 4716 4.760204 GCACCCACACTACAGTAATCTTTT 59.240 41.667 0.00 0.00 0.00 2.27
2736 4717 4.202419 TGCACCCACACTACAGTAATCTTT 60.202 41.667 0.00 0.00 0.00 2.52
2737 4718 3.326588 TGCACCCACACTACAGTAATCTT 59.673 43.478 0.00 0.00 0.00 2.40
2738 4719 2.903784 TGCACCCACACTACAGTAATCT 59.096 45.455 0.00 0.00 0.00 2.40
2739 4720 3.056107 TCTGCACCCACACTACAGTAATC 60.056 47.826 0.00 0.00 0.00 1.75
2740 4721 2.903784 TCTGCACCCACACTACAGTAAT 59.096 45.455 0.00 0.00 0.00 1.89
2741 4722 2.321719 TCTGCACCCACACTACAGTAA 58.678 47.619 0.00 0.00 0.00 2.24
2742 4723 2.003937 TCTGCACCCACACTACAGTA 57.996 50.000 0.00 0.00 0.00 2.74
2743 4724 1.070758 CTTCTGCACCCACACTACAGT 59.929 52.381 0.00 0.00 0.00 3.55
2744 4725 1.344438 TCTTCTGCACCCACACTACAG 59.656 52.381 0.00 0.00 0.00 2.74
2745 4726 1.419381 TCTTCTGCACCCACACTACA 58.581 50.000 0.00 0.00 0.00 2.74
2746 4727 2.543777 TTCTTCTGCACCCACACTAC 57.456 50.000 0.00 0.00 0.00 2.73
2747 4728 2.371841 ACATTCTTCTGCACCCACACTA 59.628 45.455 0.00 0.00 0.00 2.74
2748 4729 1.143684 ACATTCTTCTGCACCCACACT 59.856 47.619 0.00 0.00 0.00 3.55
2749 4730 1.267806 CACATTCTTCTGCACCCACAC 59.732 52.381 0.00 0.00 0.00 3.82
2750 4731 1.142667 TCACATTCTTCTGCACCCACA 59.857 47.619 0.00 0.00 0.00 4.17
2751 4732 1.896220 TCACATTCTTCTGCACCCAC 58.104 50.000 0.00 0.00 0.00 4.61
2752 4733 2.229792 GTTCACATTCTTCTGCACCCA 58.770 47.619 0.00 0.00 0.00 4.51
2753 4734 2.229792 TGTTCACATTCTTCTGCACCC 58.770 47.619 0.00 0.00 0.00 4.61
2754 4735 4.510038 AATGTTCACATTCTTCTGCACC 57.490 40.909 0.00 0.00 42.45 5.01
2755 4736 6.833342 AAAAATGTTCACATTCTTCTGCAC 57.167 33.333 5.64 0.00 45.06 4.57
2825 4806 9.541143 GGACAAGGTTTTTAAAATTGATCAGAA 57.459 29.630 16.04 0.00 0.00 3.02
2826 4807 8.700051 TGGACAAGGTTTTTAAAATTGATCAGA 58.300 29.630 16.04 0.00 0.00 3.27
2827 4808 8.885494 TGGACAAGGTTTTTAAAATTGATCAG 57.115 30.769 16.04 2.28 0.00 2.90
2828 4809 9.844257 ATTGGACAAGGTTTTTAAAATTGATCA 57.156 25.926 16.04 11.40 0.00 2.92
2839 4820 8.798402 TGTTCGATATTATTGGACAAGGTTTTT 58.202 29.630 2.91 0.00 29.02 1.94
2840 4821 8.343168 TGTTCGATATTATTGGACAAGGTTTT 57.657 30.769 2.91 0.00 29.02 2.43
2841 4822 7.931578 TGTTCGATATTATTGGACAAGGTTT 57.068 32.000 2.91 0.00 29.02 3.27
2842 4823 7.392113 TGTTGTTCGATATTATTGGACAAGGTT 59.608 33.333 15.42 0.00 41.65 3.50
2843 4824 6.882140 TGTTGTTCGATATTATTGGACAAGGT 59.118 34.615 15.42 0.00 41.65 3.50
2844 4825 7.315247 TGTTGTTCGATATTATTGGACAAGG 57.685 36.000 15.42 0.00 41.65 3.61
2845 4826 9.787532 AAATGTTGTTCGATATTATTGGACAAG 57.212 29.630 15.42 0.00 41.65 3.16
2846 4827 9.566530 CAAATGTTGTTCGATATTATTGGACAA 57.433 29.630 12.14 12.14 39.34 3.18
2847 4828 8.951243 TCAAATGTTGTTCGATATTATTGGACA 58.049 29.630 1.37 1.37 30.09 4.02
2848 4829 9.781834 TTCAAATGTTGTTCGATATTATTGGAC 57.218 29.630 0.00 0.00 0.00 4.02
2858 4839 9.743057 TCATAAAGTTTTCAAATGTTGTTCGAT 57.257 25.926 0.00 0.00 0.00 3.59
2859 4840 9.574458 TTCATAAAGTTTTCAAATGTTGTTCGA 57.426 25.926 0.00 0.00 0.00 3.71
2921 4902 9.381033 TGTTCAGAATTTCAAAAATGTTCACAT 57.619 25.926 0.00 0.00 38.41 3.21
2922 4903 8.768957 TGTTCAGAATTTCAAAAATGTTCACA 57.231 26.923 0.00 0.00 0.00 3.58
2953 4934 8.405531 CGGGATTTTCAACACTATTCATAATGT 58.594 33.333 0.00 0.00 0.00 2.71
2954 4935 8.620416 TCGGGATTTTCAACACTATTCATAATG 58.380 33.333 0.00 0.00 0.00 1.90
2955 4936 8.746052 TCGGGATTTTCAACACTATTCATAAT 57.254 30.769 0.00 0.00 0.00 1.28
2956 4937 8.455682 GTTCGGGATTTTCAACACTATTCATAA 58.544 33.333 0.00 0.00 0.00 1.90
2957 4938 7.608376 TGTTCGGGATTTTCAACACTATTCATA 59.392 33.333 0.00 0.00 0.00 2.15
2958 4939 6.432783 TGTTCGGGATTTTCAACACTATTCAT 59.567 34.615 0.00 0.00 0.00 2.57
2959 4940 5.765677 TGTTCGGGATTTTCAACACTATTCA 59.234 36.000 0.00 0.00 0.00 2.57
2960 4941 6.249035 TGTTCGGGATTTTCAACACTATTC 57.751 37.500 0.00 0.00 0.00 1.75
2961 4942 6.834168 ATGTTCGGGATTTTCAACACTATT 57.166 33.333 0.00 0.00 31.73 1.73
2962 4943 6.834168 AATGTTCGGGATTTTCAACACTAT 57.166 33.333 0.00 0.00 31.73 2.12
2963 4944 6.642707 AAATGTTCGGGATTTTCAACACTA 57.357 33.333 0.00 0.00 31.73 2.74
2964 4945 5.529581 AAATGTTCGGGATTTTCAACACT 57.470 34.783 0.00 0.00 31.73 3.55
2965 4946 6.597262 AAAAATGTTCGGGATTTTCAACAC 57.403 33.333 0.00 0.00 32.94 3.32
3067 5048 9.941325 TGATGCCACTTTAATAAAAATGACATT 57.059 25.926 0.00 0.00 27.24 2.71
3068 5049 9.369904 GTGATGCCACTTTAATAAAAATGACAT 57.630 29.630 0.37 0.37 40.10 3.06
3069 5050 8.755696 GTGATGCCACTTTAATAAAAATGACA 57.244 30.769 0.00 0.00 40.10 3.58
3082 5063 7.341256 ATGATTTCATAAGAGTGATGCCACTTT 59.659 33.333 0.00 0.00 43.21 2.66
3083 5064 6.832384 ATGATTTCATAAGAGTGATGCCACTT 59.168 34.615 0.00 0.00 43.21 3.16
3084 5065 6.262496 CATGATTTCATAAGAGTGATGCCACT 59.738 38.462 0.00 0.00 44.58 4.00
3085 5066 6.261603 TCATGATTTCATAAGAGTGATGCCAC 59.738 38.462 0.00 0.00 37.94 5.01
3086 5067 6.358991 TCATGATTTCATAAGAGTGATGCCA 58.641 36.000 0.00 0.00 34.26 4.92
3087 5068 6.872628 TCATGATTTCATAAGAGTGATGCC 57.127 37.500 0.00 0.00 34.26 4.40
3103 5084 9.431887 CATTCTTCACCAAAAGAAATCATGATT 57.568 29.630 15.36 15.36 45.62 2.57
3104 5085 8.038944 CCATTCTTCACCAAAAGAAATCATGAT 58.961 33.333 1.18 1.18 45.62 2.45
3105 5086 7.233144 TCCATTCTTCACCAAAAGAAATCATGA 59.767 33.333 0.00 0.00 45.62 3.07
3106 5087 7.380536 TCCATTCTTCACCAAAAGAAATCATG 58.619 34.615 3.45 0.00 45.62 3.07
3107 5088 7.543359 TCCATTCTTCACCAAAAGAAATCAT 57.457 32.000 3.45 0.00 45.62 2.45
3108 5089 6.975196 TCCATTCTTCACCAAAAGAAATCA 57.025 33.333 3.45 0.00 45.62 2.57
3109 5090 7.710475 TGTTTCCATTCTTCACCAAAAGAAATC 59.290 33.333 3.45 0.00 45.62 2.17
3110 5091 7.563906 TGTTTCCATTCTTCACCAAAAGAAAT 58.436 30.769 3.45 0.00 45.62 2.17
3111 5092 6.940739 TGTTTCCATTCTTCACCAAAAGAAA 58.059 32.000 3.45 0.00 45.62 2.52
3112 5093 6.537453 TGTTTCCATTCTTCACCAAAAGAA 57.463 33.333 1.91 1.91 46.31 2.52
3113 5094 6.537453 TTGTTTCCATTCTTCACCAAAAGA 57.463 33.333 0.00 0.00 33.50 2.52
3114 5095 7.790823 ATTTGTTTCCATTCTTCACCAAAAG 57.209 32.000 0.00 0.00 0.00 2.27
3115 5096 9.672673 TTTATTTGTTTCCATTCTTCACCAAAA 57.327 25.926 0.00 0.00 0.00 2.44
3116 5097 9.672673 TTTTATTTGTTTCCATTCTTCACCAAA 57.327 25.926 0.00 0.00 0.00 3.28
3117 5098 9.672673 TTTTTATTTGTTTCCATTCTTCACCAA 57.327 25.926 0.00 0.00 0.00 3.67
3141 5122 7.063426 CCTTTTTCGTCTTTTCTGCTTCTTTTT 59.937 33.333 0.00 0.00 0.00 1.94
3142 5123 6.531594 CCTTTTTCGTCTTTTCTGCTTCTTTT 59.468 34.615 0.00 0.00 0.00 2.27
3143 5124 6.036470 CCTTTTTCGTCTTTTCTGCTTCTTT 58.964 36.000 0.00 0.00 0.00 2.52
3144 5125 5.357032 TCCTTTTTCGTCTTTTCTGCTTCTT 59.643 36.000 0.00 0.00 0.00 2.52
3145 5126 4.881850 TCCTTTTTCGTCTTTTCTGCTTCT 59.118 37.500 0.00 0.00 0.00 2.85
3146 5127 5.169836 TCCTTTTTCGTCTTTTCTGCTTC 57.830 39.130 0.00 0.00 0.00 3.86
3147 5128 5.576447 TTCCTTTTTCGTCTTTTCTGCTT 57.424 34.783 0.00 0.00 0.00 3.91
3148 5129 5.576447 TTTCCTTTTTCGTCTTTTCTGCT 57.424 34.783 0.00 0.00 0.00 4.24
3149 5130 6.828502 ATTTTCCTTTTTCGTCTTTTCTGC 57.171 33.333 0.00 0.00 0.00 4.26
3190 5171 9.676195 CCATTCTTTTTGTTTGTTTCTTTTGTT 57.324 25.926 0.00 0.00 0.00 2.83
3191 5172 8.845227 ACCATTCTTTTTGTTTGTTTCTTTTGT 58.155 25.926 0.00 0.00 0.00 2.83
3192 5173 9.328721 GACCATTCTTTTTGTTTGTTTCTTTTG 57.671 29.630 0.00 0.00 0.00 2.44
3193 5174 8.511321 GGACCATTCTTTTTGTTTGTTTCTTTT 58.489 29.630 0.00 0.00 0.00 2.27
3194 5175 7.663493 TGGACCATTCTTTTTGTTTGTTTCTTT 59.337 29.630 0.00 0.00 0.00 2.52
3195 5176 7.164803 TGGACCATTCTTTTTGTTTGTTTCTT 58.835 30.769 0.00 0.00 0.00 2.52
3196 5177 6.706295 TGGACCATTCTTTTTGTTTGTTTCT 58.294 32.000 0.00 0.00 0.00 2.52
3197 5178 6.037062 CCTGGACCATTCTTTTTGTTTGTTTC 59.963 38.462 0.00 0.00 0.00 2.78
3198 5179 5.879777 CCTGGACCATTCTTTTTGTTTGTTT 59.120 36.000 0.00 0.00 0.00 2.83
3199 5180 5.427378 CCTGGACCATTCTTTTTGTTTGTT 58.573 37.500 0.00 0.00 0.00 2.83
3200 5181 4.141733 CCCTGGACCATTCTTTTTGTTTGT 60.142 41.667 0.00 0.00 0.00 2.83
3201 5182 4.379652 CCCTGGACCATTCTTTTTGTTTG 58.620 43.478 0.00 0.00 0.00 2.93
3202 5183 3.181455 GCCCTGGACCATTCTTTTTGTTT 60.181 43.478 0.00 0.00 0.00 2.83
3203 5184 2.368548 GCCCTGGACCATTCTTTTTGTT 59.631 45.455 0.00 0.00 0.00 2.83
3204 5185 1.970640 GCCCTGGACCATTCTTTTTGT 59.029 47.619 0.00 0.00 0.00 2.83
3205 5186 2.232208 GAGCCCTGGACCATTCTTTTTG 59.768 50.000 0.00 0.00 0.00 2.44
3206 5187 2.529632 GAGCCCTGGACCATTCTTTTT 58.470 47.619 0.00 0.00 0.00 1.94
3207 5188 1.614317 CGAGCCCTGGACCATTCTTTT 60.614 52.381 0.00 0.00 0.00 2.27
3208 5189 0.035056 CGAGCCCTGGACCATTCTTT 60.035 55.000 0.00 0.00 0.00 2.52
3209 5190 1.604378 CGAGCCCTGGACCATTCTT 59.396 57.895 0.00 0.00 0.00 2.52
3210 5191 3.036429 GCGAGCCCTGGACCATTCT 62.036 63.158 0.00 0.00 0.00 2.40
3211 5192 2.514824 GCGAGCCCTGGACCATTC 60.515 66.667 0.00 0.00 0.00 2.67
3212 5193 3.329889 TGCGAGCCCTGGACCATT 61.330 61.111 0.00 0.00 0.00 3.16
3213 5194 4.101448 GTGCGAGCCCTGGACCAT 62.101 66.667 0.00 0.00 0.00 3.55
3215 5196 4.767255 CAGTGCGAGCCCTGGACC 62.767 72.222 0.00 0.00 0.00 4.46
3216 5197 3.655810 CTCAGTGCGAGCCCTGGAC 62.656 68.421 7.65 0.00 34.18 4.02
3217 5198 2.781431 TACTCAGTGCGAGCCCTGGA 62.781 60.000 7.65 0.00 46.63 3.86
3218 5199 1.888436 TTACTCAGTGCGAGCCCTGG 61.888 60.000 7.65 1.99 46.63 4.45
3219 5200 0.037326 TTTACTCAGTGCGAGCCCTG 60.037 55.000 1.09 1.09 46.63 4.45
3220 5201 0.905357 ATTTACTCAGTGCGAGCCCT 59.095 50.000 0.00 0.00 46.63 5.19
3221 5202 1.009829 CATTTACTCAGTGCGAGCCC 58.990 55.000 0.00 0.00 46.63 5.19
3222 5203 0.375106 GCATTTACTCAGTGCGAGCC 59.625 55.000 0.00 0.00 46.63 4.70
3223 5204 1.363744 AGCATTTACTCAGTGCGAGC 58.636 50.000 0.00 0.00 46.63 5.03
3225 5206 4.082190 ACTTCTAGCATTTACTCAGTGCGA 60.082 41.667 0.00 0.00 43.37 5.10
3226 5207 4.032217 CACTTCTAGCATTTACTCAGTGCG 59.968 45.833 0.00 0.00 43.37 5.34
3227 5208 4.331168 CCACTTCTAGCATTTACTCAGTGC 59.669 45.833 0.00 0.00 39.10 4.40
3228 5209 4.872691 CCCACTTCTAGCATTTACTCAGTG 59.127 45.833 0.00 0.00 0.00 3.66
3229 5210 4.624125 GCCCACTTCTAGCATTTACTCAGT 60.624 45.833 0.00 0.00 0.00 3.41
3230 5211 3.873952 GCCCACTTCTAGCATTTACTCAG 59.126 47.826 0.00 0.00 0.00 3.35
3231 5212 3.370527 GGCCCACTTCTAGCATTTACTCA 60.371 47.826 0.00 0.00 0.00 3.41
3232 5213 3.206964 GGCCCACTTCTAGCATTTACTC 58.793 50.000 0.00 0.00 0.00 2.59
3233 5214 2.420129 CGGCCCACTTCTAGCATTTACT 60.420 50.000 0.00 0.00 0.00 2.24
3234 5215 1.940613 CGGCCCACTTCTAGCATTTAC 59.059 52.381 0.00 0.00 0.00 2.01
3235 5216 1.834896 TCGGCCCACTTCTAGCATTTA 59.165 47.619 0.00 0.00 0.00 1.40
3236 5217 0.618458 TCGGCCCACTTCTAGCATTT 59.382 50.000 0.00 0.00 0.00 2.32
3237 5218 0.107654 GTCGGCCCACTTCTAGCATT 60.108 55.000 0.00 0.00 0.00 3.56
3238 5219 1.522569 GTCGGCCCACTTCTAGCAT 59.477 57.895 0.00 0.00 0.00 3.79
3239 5220 2.656069 GGTCGGCCCACTTCTAGCA 61.656 63.158 0.00 0.00 0.00 3.49
3240 5221 2.187163 GGTCGGCCCACTTCTAGC 59.813 66.667 0.00 0.00 0.00 3.42
3250 5231 1.369321 GATGAGAGATGGGTCGGCC 59.631 63.158 0.00 0.00 0.00 6.13
3251 5232 1.006805 CGATGAGAGATGGGTCGGC 60.007 63.158 0.00 0.00 0.00 5.54
3252 5233 1.006805 GCGATGAGAGATGGGTCGG 60.007 63.158 0.00 0.00 33.26 4.79
3253 5234 0.039617 GAGCGATGAGAGATGGGTCG 60.040 60.000 0.00 0.00 35.56 4.79
3254 5235 1.035923 TGAGCGATGAGAGATGGGTC 58.964 55.000 0.00 0.00 0.00 4.46
3255 5236 0.749649 GTGAGCGATGAGAGATGGGT 59.250 55.000 0.00 0.00 0.00 4.51
3256 5237 0.749049 TGTGAGCGATGAGAGATGGG 59.251 55.000 0.00 0.00 0.00 4.00
3257 5238 2.674954 GATGTGAGCGATGAGAGATGG 58.325 52.381 0.00 0.00 0.00 3.51
3258 5239 2.031333 TCGATGTGAGCGATGAGAGATG 60.031 50.000 0.00 0.00 32.09 2.90
3259 5240 2.225467 TCGATGTGAGCGATGAGAGAT 58.775 47.619 0.00 0.00 32.09 2.75
3260 5241 1.668419 TCGATGTGAGCGATGAGAGA 58.332 50.000 0.00 0.00 32.09 3.10
3261 5242 2.702898 ATCGATGTGAGCGATGAGAG 57.297 50.000 0.00 0.00 45.74 3.20
3269 5250 0.443869 ACAAACGCATCGATGTGAGC 59.556 50.000 38.03 19.01 40.61 4.26
3270 5251 1.460743 ACACAAACGCATCGATGTGAG 59.539 47.619 38.03 28.19 44.09 3.51
3271 5252 1.194322 CACACAAACGCATCGATGTGA 59.806 47.619 38.03 0.00 44.09 3.58
3272 5253 1.194322 TCACACAAACGCATCGATGTG 59.806 47.619 31.87 31.87 45.43 3.21
3273 5254 1.507562 TCACACAAACGCATCGATGT 58.492 45.000 25.47 4.92 32.95 3.06
3274 5255 2.592796 TTCACACAAACGCATCGATG 57.407 45.000 21.27 21.27 0.00 3.84
3275 5256 2.222796 CGATTCACACAAACGCATCGAT 60.223 45.455 0.00 0.00 36.47 3.59
3276 5257 1.125930 CGATTCACACAAACGCATCGA 59.874 47.619 0.00 0.00 36.47 3.59
3277 5258 1.136363 ACGATTCACACAAACGCATCG 60.136 47.619 0.00 0.00 39.49 3.84
3278 5259 2.594529 ACGATTCACACAAACGCATC 57.405 45.000 0.00 0.00 0.00 3.91
3279 5260 2.289274 TCAACGATTCACACAAACGCAT 59.711 40.909 0.00 0.00 0.00 4.73
3280 5261 1.666189 TCAACGATTCACACAAACGCA 59.334 42.857 0.00 0.00 0.00 5.24
3281 5262 2.034076 GTCAACGATTCACACAAACGC 58.966 47.619 0.00 0.00 0.00 4.84
3282 5263 3.311788 TGTCAACGATTCACACAAACG 57.688 42.857 0.00 0.00 0.00 3.60
3283 5264 5.741510 TGAATTGTCAACGATTCACACAAAC 59.258 36.000 17.88 0.00 46.39 2.93
3284 5265 5.884771 TGAATTGTCAACGATTCACACAAA 58.115 33.333 17.88 0.00 46.39 2.83
3285 5266 5.491635 TGAATTGTCAACGATTCACACAA 57.508 34.783 17.88 0.44 46.39 3.33
3297 5278 3.690422 GCTCGTTGTGTTGAATTGTCAA 58.310 40.909 0.00 0.00 41.57 3.18
3298 5279 2.286125 CGCTCGTTGTGTTGAATTGTCA 60.286 45.455 0.00 0.00 0.00 3.58
3299 5280 2.298300 CGCTCGTTGTGTTGAATTGTC 58.702 47.619 0.00 0.00 0.00 3.18
3300 5281 1.002900 CCGCTCGTTGTGTTGAATTGT 60.003 47.619 0.00 0.00 0.00 2.71
3301 5282 1.002900 ACCGCTCGTTGTGTTGAATTG 60.003 47.619 0.00 0.00 0.00 2.32
3302 5283 1.002900 CACCGCTCGTTGTGTTGAATT 60.003 47.619 0.00 0.00 0.00 2.17
3303 5284 0.586319 CACCGCTCGTTGTGTTGAAT 59.414 50.000 0.00 0.00 0.00 2.57
3304 5285 0.460459 TCACCGCTCGTTGTGTTGAA 60.460 50.000 0.00 0.00 34.14 2.69
3305 5286 0.460459 TTCACCGCTCGTTGTGTTGA 60.460 50.000 0.00 0.00 34.14 3.18
3306 5287 0.586319 ATTCACCGCTCGTTGTGTTG 59.414 50.000 0.00 0.00 34.14 3.33
3307 5288 2.066262 CTATTCACCGCTCGTTGTGTT 58.934 47.619 0.00 0.00 34.14 3.32
3308 5289 1.671850 CCTATTCACCGCTCGTTGTGT 60.672 52.381 0.00 0.00 34.14 3.72
3309 5290 0.999406 CCTATTCACCGCTCGTTGTG 59.001 55.000 0.00 0.00 0.00 3.33
3310 5291 3.436001 CCTATTCACCGCTCGTTGT 57.564 52.632 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.