AutoCloner

Multiple sequence alignment - TraesCS3A01G248400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G248400	chr3A	100.000	2574	0	0	1	2574	466478719	466476146	0.000000e+00	4754
1	TraesCS3A01G248400	chr3A	99.450	545	3	0	2030	2574	333661653	333662197	0.000000e+00	990
2	TraesCS3A01G248400	chr3A	99.631	542	2	0	2033	2574	492023699	492024240	0.000000e+00	990
3	TraesCS3A01G248400	chr3A	99.449	544	3	0	2031	2574	341358600	341359143	0.000000e+00	989
4	TraesCS3A01G248400	chr6A	98.168	1911	34	1	1	1911	521474931	521476840	0.000000e+00	3334
5	TraesCS3A01G248400	chr6A	95.143	1647	78	2	1	1647	171568293	171569937	0.000000e+00	2597
6	TraesCS3A01G248400	chr6A	99.267	546	3	1	2029	2574	491586309	491586853	0.000000e+00	985
7	TraesCS3A01G248400	chr1A	97.759	1919	29	4	1	1915	307483513	307481605	0.000000e+00	3293
8	TraesCS3A01G248400	chr1A	99.815	540	1	0	2035	2574	441120235	441119696	0.000000e+00	992
9	TraesCS3A01G248400	chr1A	96.800	125	4	0	1911	2035	347297641	347297765	2.600000e-50	209
10	TraesCS3A01G248400	chr1A	89.600	125	12	1	1911	2035	331280183	331280306	9.530000e-35	158
11	TraesCS3A01G248400	chr5D	95.903	1904	76	2	1	1904	74471255	74473156	0.000000e+00	3083
12	TraesCS3A01G248400	chr5D	85.189	1904	278	4	1	1902	350304396	350306297	0.000000e+00	1951
13	TraesCS3A01G248400	chr5D	85.205	1906	270	11	1	1902	453122965	453121068	0.000000e+00	1947
14	TraesCS3A01G248400	chr5D	87.200	125	16	0	1911	2035	552348417	552348293	2.670000e-30	143
15	TraesCS3A01G248400	chr4A	98.459	1687	25	1	1	1687	542489270	542490955	0.000000e+00	2970
16	TraesCS3A01G248400	chr4A	98.340	241	4	0	1671	1911	542491587	542491827	8.510000e-115	424
17	TraesCS3A01G248400	chr7A	98.503	1670	25	0	242	1911	709984109	709985778	0.000000e+00	2946
18	TraesCS3A01G248400	chr2B	94.981	1295	40	3	619	1912	699117676	699118946	0.000000e+00	2008
19	TraesCS3A01G248400	chr2B	92.000	125	10	0	1911	2035	106702386	106702262	2.630000e-40	176
20	TraesCS3A01G248400	chr1B	84.057	1267	185	13	1	1264	327316738	327315486	0.000000e+00	1205
21	TraesCS3A01G248400	chr1B	100.000	540	0	0	2035	2574	12461996	12462535	0.000000e+00	998
22	TraesCS3A01G248400	chr1B	94.444	126	6	1	1911	2035	593501206	593501081	2.610000e-45	193
23	TraesCS3A01G248400	chr5B	84.433	1137	168	7	791	1922	662648727	662647595	0.000000e+00	1110
24	TraesCS3A01G248400	chr6B	99.815	540	1	0	2035	2574	489530344	489529805	0.000000e+00	992
25	TraesCS3A01G248400	chr5A	99.815	540	1	0	2035	2574	572772244	572772783	0.000000e+00	992
26	TraesCS3A01G248400	chr3B	99.815	540	1	0	2035	2574	53289742	53290281	0.000000e+00	992
27	TraesCS3A01G248400	chr2A	95.200	125	6	0	1911	2035	655520566	655520690	5.620000e-47	198
28	TraesCS3A01G248400	chr2A	95.122	123	6	0	1911	2033	523878206	523878328	7.270000e-46	195
29	TraesCS3A01G248400	chr4D	89.600	125	13	0	1911	2035	280776594	280776470	2.650000e-35	159
30	TraesCS3A01G248400	chr3D	88.800	125	14	0	1911	2035	29163667	29163543	1.230000e-33	154

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G248400	chr3A	466476146	466478719	2573	True	4754	4754	100.0000	1	2574	1	chr3A.!!$R1	2573
1	TraesCS3A01G248400	chr3A	333661653	333662197	544	False	990	990	99.4500	2030	2574	1	chr3A.!!$F1	544
2	TraesCS3A01G248400	chr3A	492023699	492024240	541	False	990	990	99.6310	2033	2574	1	chr3A.!!$F3	541
3	TraesCS3A01G248400	chr3A	341358600	341359143	543	False	989	989	99.4490	2031	2574	1	chr3A.!!$F2	543
4	TraesCS3A01G248400	chr6A	521474931	521476840	1909	False	3334	3334	98.1680	1	1911	1	chr6A.!!$F3	1910
5	TraesCS3A01G248400	chr6A	171568293	171569937	1644	False	2597	2597	95.1430	1	1647	1	chr6A.!!$F1	1646
6	TraesCS3A01G248400	chr6A	491586309	491586853	544	False	985	985	99.2670	2029	2574	1	chr6A.!!$F2	545
7	TraesCS3A01G248400	chr1A	307481605	307483513	1908	True	3293	3293	97.7590	1	1915	1	chr1A.!!$R1	1914
8	TraesCS3A01G248400	chr1A	441119696	441120235	539	True	992	992	99.8150	2035	2574	1	chr1A.!!$R2	539
9	TraesCS3A01G248400	chr5D	74471255	74473156	1901	False	3083	3083	95.9030	1	1904	1	chr5D.!!$F1	1903
10	TraesCS3A01G248400	chr5D	350304396	350306297	1901	False	1951	1951	85.1890	1	1902	1	chr5D.!!$F2	1901
11	TraesCS3A01G248400	chr5D	453121068	453122965	1897	True	1947	1947	85.2050	1	1902	1	chr5D.!!$R1	1901
12	TraesCS3A01G248400	chr4A	542489270	542491827	2557	False	1697	2970	98.3995	1	1911	2	chr4A.!!$F1	1910
13	TraesCS3A01G248400	chr7A	709984109	709985778	1669	False	2946	2946	98.5030	242	1911	1	chr7A.!!$F1	1669
14	TraesCS3A01G248400	chr2B	699117676	699118946	1270	False	2008	2008	94.9810	619	1912	1	chr2B.!!$F1	1293
15	TraesCS3A01G248400	chr1B	327315486	327316738	1252	True	1205	1205	84.0570	1	1264	1	chr1B.!!$R1	1263
16	TraesCS3A01G248400	chr1B	12461996	12462535	539	False	998	998	100.0000	2035	2574	1	chr1B.!!$F1	539
17	TraesCS3A01G248400	chr5B	662647595	662648727	1132	True	1110	1110	84.4330	791	1922	1	chr5B.!!$R1	1131
18	TraesCS3A01G248400	chr6B	489529805	489530344	539	True	992	992	99.8150	2035	2574	1	chr6B.!!$R1	539
19	TraesCS3A01G248400	chr5A	572772244	572772783	539	False	992	992	99.8150	2035	2574	1	chr5A.!!$F1	539
20	TraesCS3A01G248400	chr3B	53289742	53290281	539	False	992	992	99.8150	2035	2574	1	chr3B.!!$F1	539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
532	533	1.064758	TGAAAGGAGTGCAGGTGTTGT	60.065	47.619	0.0	0.0	0.0	3.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1868	2521	0.034186	CCATTACCCAGGCAAGCTGA	60.034	55.0	0.0	0.0	0.0	4.26	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
168	169	3.944087	AGTCCTCATCAAAGTTGTAGCC	58.056	45.455	0.00	0.00	0.00	3.93
396	397	1.553706	CAAGGCAGGCTTGGAGAATT	58.446	50.000	25.77	0.00	0.00	2.17
532	533	1.064758	TGAAAGGAGTGCAGGTGTTGT	60.065	47.619	0.00	0.00	0.00	3.32
902	904	6.203530	TCGTCATCAAATAAGAATGATCAGCC	59.796	38.462	0.09	0.00	0.00	4.85
942	944	2.579410	AACTATGGACGTTGCCCTTT	57.421	45.000	0.00	0.00	0.00	3.11
1201	1203	4.079844	TGGAGGATATCTTGCACATGGAAA	60.080	41.667	4.87	0.00	0.00	3.13
1593	1598	2.787473	ATGAAGCGTCAAGAATGGGA	57.213	45.000	6.39	0.00	37.30	4.37
1703	2356	5.352569	TGCTGTTTAAAGAGATAAGAGCAGC	59.647	40.000	16.08	13.25	43.83	5.25
1868	2521	2.038387	AAACTTGTCGCTGGTGAGTT	57.962	45.000	0.00	0.00	32.33	3.01
1933	2589	9.503427	AAAAGAAGATTGTTTTTCGTCTACTTG	57.497	29.630	0.00	0.00	32.67	3.16
1934	2590	7.190920	AGAAGATTGTTTTTCGTCTACTTGG	57.809	36.000	0.00	0.00	31.46	3.61
1935	2591	6.990349	AGAAGATTGTTTTTCGTCTACTTGGA	59.010	34.615	0.00	0.00	31.46	3.53
1936	2592	7.497909	AGAAGATTGTTTTTCGTCTACTTGGAA	59.502	33.333	0.00	0.00	31.46	3.53
1937	2593	7.745620	AGATTGTTTTTCGTCTACTTGGAAT	57.254	32.000	0.00	0.00	0.00	3.01
1938	2594	7.584987	AGATTGTTTTTCGTCTACTTGGAATG	58.415	34.615	0.00	0.00	0.00	2.67
1939	2595	5.103290	TGTTTTTCGTCTACTTGGAATGC	57.897	39.130	0.00	0.00	0.00	3.56
1940	2596	4.148891	GTTTTTCGTCTACTTGGAATGCG	58.851	43.478	0.00	0.00	0.00	4.73
1941	2597	3.306917	TTTCGTCTACTTGGAATGCGA	57.693	42.857	0.00	0.00	0.00	5.10
1942	2598	2.273370	TCGTCTACTTGGAATGCGAC	57.727	50.000	0.00	0.00	0.00	5.19
1943	2599	1.816835	TCGTCTACTTGGAATGCGACT	59.183	47.619	0.00	0.00	0.00	4.18
1944	2600	1.920574	CGTCTACTTGGAATGCGACTG	59.079	52.381	0.00	0.00	0.00	3.51
1945	2601	2.415491	CGTCTACTTGGAATGCGACTGA	60.415	50.000	0.00	0.00	0.00	3.41
1946	2602	3.182967	GTCTACTTGGAATGCGACTGAG	58.817	50.000	0.00	0.00	0.00	3.35
1947	2603	2.826128	TCTACTTGGAATGCGACTGAGT	59.174	45.455	0.00	0.00	0.00	3.41
1948	2604	2.550830	ACTTGGAATGCGACTGAGTT	57.449	45.000	0.00	0.00	0.00	3.01
1949	2605	2.851195	ACTTGGAATGCGACTGAGTTT	58.149	42.857	0.00	0.00	0.00	2.66
1950	2606	3.214328	ACTTGGAATGCGACTGAGTTTT	58.786	40.909	0.00	0.00	0.00	2.43
1951	2607	3.003689	ACTTGGAATGCGACTGAGTTTTG	59.996	43.478	0.00	0.00	0.00	2.44
1952	2608	2.844946	TGGAATGCGACTGAGTTTTGA	58.155	42.857	0.00	0.00	0.00	2.69
1953	2609	3.411446	TGGAATGCGACTGAGTTTTGAT	58.589	40.909	0.00	0.00	0.00	2.57
1954	2610	4.574892	TGGAATGCGACTGAGTTTTGATA	58.425	39.130	0.00	0.00	0.00	2.15
1955	2611	4.391830	TGGAATGCGACTGAGTTTTGATAC	59.608	41.667	0.00	0.00	0.00	2.24
1956	2612	4.631813	GGAATGCGACTGAGTTTTGATACT	59.368	41.667	0.00	0.00	0.00	2.12
1957	2613	5.122396	GGAATGCGACTGAGTTTTGATACTT	59.878	40.000	0.00	0.00	0.00	2.24
1958	2614	4.990543	TGCGACTGAGTTTTGATACTTG	57.009	40.909	0.00	0.00	0.00	3.16
1959	2615	4.627058	TGCGACTGAGTTTTGATACTTGA	58.373	39.130	0.00	0.00	0.00	3.02
1960	2616	5.237815	TGCGACTGAGTTTTGATACTTGAT	58.762	37.500	0.00	0.00	0.00	2.57
1961	2617	5.348724	TGCGACTGAGTTTTGATACTTGATC	59.651	40.000	0.00	0.00	34.84	2.92
1962	2618	5.578727	GCGACTGAGTTTTGATACTTGATCT	59.421	40.000	0.00	0.00	35.37	2.75
1963	2619	6.454848	GCGACTGAGTTTTGATACTTGATCTG	60.455	42.308	0.00	0.00	35.37	2.90
1964	2620	6.808704	CGACTGAGTTTTGATACTTGATCTGA	59.191	38.462	0.00	0.00	35.37	3.27
1965	2621	7.490725	CGACTGAGTTTTGATACTTGATCTGAT	59.509	37.037	0.00	0.00	35.37	2.90
1966	2622	8.715191	ACTGAGTTTTGATACTTGATCTGATC	57.285	34.615	10.72	10.72	35.37	2.92
1967	2623	8.538701	ACTGAGTTTTGATACTTGATCTGATCT	58.461	33.333	17.82	1.54	35.37	2.75
1968	2624	9.381033	CTGAGTTTTGATACTTGATCTGATCTT	57.619	33.333	17.82	5.87	35.37	2.40
1969	2625	9.730705	TGAGTTTTGATACTTGATCTGATCTTT	57.269	29.630	17.82	5.55	35.37	2.52
1974	2630	9.948964	TTTGATACTTGATCTGATCTTTTGAGA	57.051	29.630	17.82	0.00	35.37	3.27
1975	2631	9.948964	TTGATACTTGATCTGATCTTTTGAGAA	57.051	29.630	17.82	2.32	35.37	2.87
1978	2634	9.902684	ATACTTGATCTGATCTTTTGAGAATGT	57.097	29.630	17.82	6.65	0.00	2.71
1980	2636	9.730705	ACTTGATCTGATCTTTTGAGAATGTAA	57.269	29.630	17.82	0.00	0.00	2.41
2002	2658	9.292195	TGTAATAGGATAGATGTAATGTCGTGA	57.708	33.333	0.00	0.00	0.00	4.35
2007	2663	8.001881	AGGATAGATGTAATGTCGTGATATCC	57.998	38.462	0.00	0.00	37.49	2.59
2008	2664	7.615757	AGGATAGATGTAATGTCGTGATATCCA	59.384	37.037	0.00	0.00	38.95	3.41
2009	2665	7.918033	GGATAGATGTAATGTCGTGATATCCAG	59.082	40.741	0.00	0.00	37.28	3.86
2010	2666	6.030548	AGATGTAATGTCGTGATATCCAGG	57.969	41.667	0.00	0.00	0.00	4.45
2011	2667	5.540337	AGATGTAATGTCGTGATATCCAGGT	59.460	40.000	0.00	0.00	32.76	4.00
2012	2668	5.607939	TGTAATGTCGTGATATCCAGGTT	57.392	39.130	0.00	0.00	32.76	3.50
2013	2669	5.984725	TGTAATGTCGTGATATCCAGGTTT	58.015	37.500	0.00	0.00	32.76	3.27
2014	2670	6.411376	TGTAATGTCGTGATATCCAGGTTTT	58.589	36.000	0.00	0.00	32.76	2.43
2015	2671	6.537301	TGTAATGTCGTGATATCCAGGTTTTC	59.463	38.462	0.00	0.00	32.76	2.29
2016	2672	3.517602	TGTCGTGATATCCAGGTTTTCG	58.482	45.455	0.00	0.00	32.76	3.46
2017	2673	2.284417	GTCGTGATATCCAGGTTTTCGC	59.716	50.000	0.00	0.00	32.76	4.70
2018	2674	1.597663	CGTGATATCCAGGTTTTCGCC	59.402	52.381	0.00	0.00	0.00	5.54
2019	2675	1.947456	GTGATATCCAGGTTTTCGCCC	59.053	52.381	0.00	0.00	0.00	6.13
2020	2676	1.133915	TGATATCCAGGTTTTCGCCCC	60.134	52.381	0.00	0.00	0.00	5.80
2021	2677	0.923358	ATATCCAGGTTTTCGCCCCA	59.077	50.000	0.00	0.00	0.00	4.96
2022	2678	0.923358	TATCCAGGTTTTCGCCCCAT	59.077	50.000	0.00	0.00	0.00	4.00
2023	2679	0.684153	ATCCAGGTTTTCGCCCCATG	60.684	55.000	0.00	0.00	0.00	3.66
2024	2680	1.304052	CCAGGTTTTCGCCCCATGA	60.304	57.895	0.00	0.00	0.00	3.07
2025	2681	0.684153	CCAGGTTTTCGCCCCATGAT	60.684	55.000	0.00	0.00	0.00	2.45
2026	2682	1.409521	CCAGGTTTTCGCCCCATGATA	60.410	52.381	0.00	0.00	0.00	2.15
2027	2683	1.676006	CAGGTTTTCGCCCCATGATAC	59.324	52.381	0.00	0.00	0.00	2.24
2028	2684	1.564348	AGGTTTTCGCCCCATGATACT	59.436	47.619	0.00	0.00	0.00	2.12

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability
168	169	2.480073	CGCATAAACAGGGATTGCTTGG	60.480	50.000	0.00	0.00	3.61
396	397	5.631481	GCATAGGGAAGATGGGTTTTGTAGA	60.631	44.000	0.00	0.00	2.59
532	533	8.010697	TCCTACTCTCCATATGATTCCACTTTA	58.989	37.037	3.65	0.00	1.85
942	944	1.003580	GAGTGCAGGATCTTGTTGGGA	59.996	52.381	6.70	0.00	4.37
1201	1203	7.288810	TGCATACTTTCAGACATTTTTCCTT	57.711	32.000	0.00	0.00	3.36
1703	2356	4.232221	AGATTGAAAAGCTGATTGCAACG	58.768	39.130	0.00	43.53	4.10
1868	2521	0.034186	CCATTACCCAGGCAAGCTGA	60.034	55.000	0.00	0.00	4.26
1911	2567	7.186021	TCCAAGTAGACGAAAAACAATCTTC	57.814	36.000	0.00	0.00	2.87
1915	2571	6.149633	GCATTCCAAGTAGACGAAAAACAAT	58.850	36.000	0.00	0.00	2.71
1916	2572	5.516090	GCATTCCAAGTAGACGAAAAACAA	58.484	37.500	0.00	0.00	2.83
1917	2573	4.319190	CGCATTCCAAGTAGACGAAAAACA	60.319	41.667	0.00	0.00	2.83
1918	2574	4.084223	TCGCATTCCAAGTAGACGAAAAAC	60.084	41.667	0.00	0.00	2.43
1921	2577	2.991190	GTCGCATTCCAAGTAGACGAAA	59.009	45.455	0.00	0.00	3.46
1922	2578	2.230508	AGTCGCATTCCAAGTAGACGAA	59.769	45.455	0.00	34.21	3.85
1923	2579	1.816835	AGTCGCATTCCAAGTAGACGA	59.183	47.619	0.00	34.21	4.20
1924	2580	1.920574	CAGTCGCATTCCAAGTAGACG	59.079	52.381	0.00	34.21	4.18
1925	2581	3.182967	CTCAGTCGCATTCCAAGTAGAC	58.817	50.000	0.00	0.00	2.59
1926	2582	2.826128	ACTCAGTCGCATTCCAAGTAGA	59.174	45.455	0.00	0.00	2.59
1927	2583	3.238108	ACTCAGTCGCATTCCAAGTAG	57.762	47.619	0.00	0.00	2.57
1928	2584	3.678056	AACTCAGTCGCATTCCAAGTA	57.322	42.857	0.00	0.00	2.24
1929	2585	2.550830	AACTCAGTCGCATTCCAAGT	57.449	45.000	0.00	0.00	3.16
1930	2586	3.250762	TCAAAACTCAGTCGCATTCCAAG	59.749	43.478	0.00	0.00	3.61
1931	2587	3.210227	TCAAAACTCAGTCGCATTCCAA	58.790	40.909	0.00	0.00	3.53
1932	2588	2.844946	TCAAAACTCAGTCGCATTCCA	58.155	42.857	0.00	0.00	3.53
1933	2589	4.631813	AGTATCAAAACTCAGTCGCATTCC	59.368	41.667	0.00	0.00	3.01
1934	2590	5.786401	AGTATCAAAACTCAGTCGCATTC	57.214	39.130	0.00	0.00	2.67
1935	2591	5.700832	TCAAGTATCAAAACTCAGTCGCATT	59.299	36.000	0.00	0.00	3.56
1936	2592	5.237815	TCAAGTATCAAAACTCAGTCGCAT	58.762	37.500	0.00	0.00	4.73
1937	2593	4.627058	TCAAGTATCAAAACTCAGTCGCA	58.373	39.130	0.00	0.00	5.10
1938	2594	5.578727	AGATCAAGTATCAAAACTCAGTCGC	59.421	40.000	0.00	37.03	5.19
1939	2595	6.808704	TCAGATCAAGTATCAAAACTCAGTCG	59.191	38.462	0.00	37.03	4.18
1940	2596	8.715191	ATCAGATCAAGTATCAAAACTCAGTC	57.285	34.615	0.00	37.03	3.51
1941	2597	8.538701	AGATCAGATCAAGTATCAAAACTCAGT	58.461	33.333	13.14	37.03	3.41
1942	2598	8.945481	AGATCAGATCAAGTATCAAAACTCAG	57.055	34.615	13.14	37.03	3.35
1943	2599	9.730705	AAAGATCAGATCAAGTATCAAAACTCA	57.269	29.630	13.14	37.03	3.41
1948	2604	9.948964	TCTCAAAAGATCAGATCAAGTATCAAA	57.051	29.630	13.14	37.03	2.69
1949	2605	9.948964	TTCTCAAAAGATCAGATCAAGTATCAA	57.051	29.630	13.14	37.03	2.57
1952	2608	9.902684	ACATTCTCAAAAGATCAGATCAAGTAT	57.097	29.630	13.14	0.00	2.12
1954	2610	9.730705	TTACATTCTCAAAAGATCAGATCAAGT	57.269	29.630	13.14	0.00	3.16
1976	2632	9.292195	TCACGACATTACATCTATCCTATTACA	57.708	33.333	0.00	0.00	2.41
1981	2637	9.121658	GGATATCACGACATTACATCTATCCTA	57.878	37.037	4.83	32.79	2.94
1982	2638	7.615757	TGGATATCACGACATTACATCTATCCT	59.384	37.037	4.83	35.31	3.24
1983	2639	7.772166	TGGATATCACGACATTACATCTATCC	58.228	38.462	4.83	35.00	2.59
1984	2640	7.918033	CCTGGATATCACGACATTACATCTATC	59.082	40.741	4.83	0.00	2.08
1985	2641	7.397476	ACCTGGATATCACGACATTACATCTAT	59.603	37.037	0.00	0.00	1.98
1986	2642	6.719829	ACCTGGATATCACGACATTACATCTA	59.280	38.462	0.00	0.00	1.98
1987	2643	5.540337	ACCTGGATATCACGACATTACATCT	59.460	40.000	0.00	0.00	2.90
1988	2644	5.784177	ACCTGGATATCACGACATTACATC	58.216	41.667	0.00	0.00	3.06
1989	2645	5.808366	ACCTGGATATCACGACATTACAT	57.192	39.130	0.00	0.00	2.29
1990	2646	5.607939	AACCTGGATATCACGACATTACA	57.392	39.130	0.00	0.00	2.41
1991	2647	6.292168	CGAAAACCTGGATATCACGACATTAC	60.292	42.308	0.00	0.00	1.89
1992	2648	5.751509	CGAAAACCTGGATATCACGACATTA	59.248	40.000	0.00	0.00	1.90
1993	2649	4.570772	CGAAAACCTGGATATCACGACATT	59.429	41.667	0.00	0.00	2.71
1994	2650	4.119862	CGAAAACCTGGATATCACGACAT	58.880	43.478	0.00	0.00	3.06
1995	2651	3.517602	CGAAAACCTGGATATCACGACA	58.482	45.455	0.00	0.00	4.35
1996	2652	2.284417	GCGAAAACCTGGATATCACGAC	59.716	50.000	0.00	0.00	4.34
1997	2653	2.546778	GCGAAAACCTGGATATCACGA	58.453	47.619	0.00	0.00	4.35
1998	2654	1.597663	GGCGAAAACCTGGATATCACG	59.402	52.381	0.00	0.00	4.35
1999	2655	1.947456	GGGCGAAAACCTGGATATCAC	59.053	52.381	0.00	0.00	3.06
2000	2656	1.133915	GGGGCGAAAACCTGGATATCA	60.134	52.381	0.00	0.00	2.15
2001	2657	1.133915	TGGGGCGAAAACCTGGATATC	60.134	52.381	0.00	0.00	1.63
2002	2658	0.923358	TGGGGCGAAAACCTGGATAT	59.077	50.000	0.00	0.00	1.63
2003	2659	0.923358	ATGGGGCGAAAACCTGGATA	59.077	50.000	0.00	0.00	2.59
2004	2660	0.684153	CATGGGGCGAAAACCTGGAT	60.684	55.000	0.00	0.00	3.41
2005	2661	1.304052	CATGGGGCGAAAACCTGGA	60.304	57.895	0.00	0.00	3.86
2006	2662	0.684153	ATCATGGGGCGAAAACCTGG	60.684	55.000	0.00	0.00	4.45
2007	2663	1.676006	GTATCATGGGGCGAAAACCTG	59.324	52.381	0.00	0.00	4.00
2008	2664	1.564348	AGTATCATGGGGCGAAAACCT	59.436	47.619	0.00	0.00	3.50
2009	2665	1.947456	GAGTATCATGGGGCGAAAACC	59.053	52.381	0.00	33.17	3.27
2010	2666	1.597663	CGAGTATCATGGGGCGAAAAC	59.402	52.381	0.00	33.17	2.43
2011	2667	1.208535	ACGAGTATCATGGGGCGAAAA	59.791	47.619	0.00	33.17	2.29
2012	2668	0.828022	ACGAGTATCATGGGGCGAAA	59.172	50.000	0.00	33.17	3.46
2013	2669	0.828022	AACGAGTATCATGGGGCGAA	59.172	50.000	0.00	33.17	4.70
2014	2670	0.828022	AAACGAGTATCATGGGGCGA	59.172	50.000	0.00	33.17	5.54
2015	2671	1.202533	AGAAACGAGTATCATGGGGCG	60.203	52.381	0.00	33.17	6.13
2016	2672	2.213499	CAGAAACGAGTATCATGGGGC	58.787	52.381	0.00	33.17	5.80
2017	2673	3.543680	ACAGAAACGAGTATCATGGGG	57.456	47.619	0.00	33.17	4.96
2018	2674	3.623060	CCAACAGAAACGAGTATCATGGG	59.377	47.826	0.00	33.17	4.00
2019	2675	4.503910	TCCAACAGAAACGAGTATCATGG	58.496	43.478	0.00	33.17	3.66
2020	2676	6.480524	TTTCCAACAGAAACGAGTATCATG	57.519	37.500	0.00	39.60	3.07

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.