Multiple sequence alignment - TraesCS3A01G248100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G248100 chr3A 100.000 4425 0 0 1 4425 466105843 466110267 0.000000e+00 8172
1 TraesCS3A01G248100 chr3A 91.413 559 18 12 1 542 547420496 547421041 0.000000e+00 739
2 TraesCS3A01G248100 chr3D 97.172 3501 78 4 946 4425 346973249 346976749 0.000000e+00 5897
3 TraesCS3A01G248100 chr3B 96.386 2103 57 3 2342 4425 447004717 447006819 0.000000e+00 3445
4 TraesCS3A01G248100 chr3B 97.592 955 16 3 879 1832 447002899 447003847 0.000000e+00 1629
5 TraesCS3A01G248100 chr3B 93.427 426 21 1 1923 2341 447003864 447004289 3.760000e-175 625
6 TraesCS3A01G248100 chr6A 96.770 836 10 4 1 831 184955254 184956077 0.000000e+00 1378
7 TraesCS3A01G248100 chr2D 92.527 843 25 9 1 823 522755119 522754295 0.000000e+00 1173
8 TraesCS3A01G248100 chr2D 90.963 841 23 11 1 823 476037790 476038595 0.000000e+00 1083
9 TraesCS3A01G248100 chr2D 94.737 665 21 5 142 804 37493549 37492897 0.000000e+00 1022
10 TraesCS3A01G248100 chr2D 96.875 96 3 0 1 96 37493734 37493639 1.270000e-35 161
11 TraesCS3A01G248100 chr5B 92.136 852 27 8 1 831 589472317 589473149 0.000000e+00 1166
12 TraesCS3A01G248100 chr7D 91.176 850 23 10 1 831 610693024 610693840 0.000000e+00 1107
13 TraesCS3A01G248100 chr1D 91.263 847 20 13 1 828 229061258 229062069 0.000000e+00 1105
14 TraesCS3A01G248100 chr1D 90.651 845 24 11 1 823 462164431 462165242 0.000000e+00 1072
15 TraesCS3A01G248100 chr2A 90.304 691 31 17 154 823 760383406 760382731 0.000000e+00 872
16 TraesCS3A01G248100 chr5D 88.693 398 15 12 154 549 355457445 355457076 4.030000e-125 459


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G248100 chr3A 466105843 466110267 4424 False 8172.000000 8172 100.000000 1 4425 1 chr3A.!!$F1 4424
1 TraesCS3A01G248100 chr3A 547420496 547421041 545 False 739.000000 739 91.413000 1 542 1 chr3A.!!$F2 541
2 TraesCS3A01G248100 chr3D 346973249 346976749 3500 False 5897.000000 5897 97.172000 946 4425 1 chr3D.!!$F1 3479
3 TraesCS3A01G248100 chr3B 447002899 447006819 3920 False 1899.666667 3445 95.801667 879 4425 3 chr3B.!!$F1 3546
4 TraesCS3A01G248100 chr6A 184955254 184956077 823 False 1378.000000 1378 96.770000 1 831 1 chr6A.!!$F1 830
5 TraesCS3A01G248100 chr2D 522754295 522755119 824 True 1173.000000 1173 92.527000 1 823 1 chr2D.!!$R1 822
6 TraesCS3A01G248100 chr2D 476037790 476038595 805 False 1083.000000 1083 90.963000 1 823 1 chr2D.!!$F1 822
7 TraesCS3A01G248100 chr2D 37492897 37493734 837 True 591.500000 1022 95.806000 1 804 2 chr2D.!!$R2 803
8 TraesCS3A01G248100 chr5B 589472317 589473149 832 False 1166.000000 1166 92.136000 1 831 1 chr5B.!!$F1 830
9 TraesCS3A01G248100 chr7D 610693024 610693840 816 False 1107.000000 1107 91.176000 1 831 1 chr7D.!!$F1 830
10 TraesCS3A01G248100 chr1D 229061258 229062069 811 False 1105.000000 1105 91.263000 1 828 1 chr1D.!!$F1 827
11 TraesCS3A01G248100 chr1D 462164431 462165242 811 False 1072.000000 1072 90.651000 1 823 1 chr1D.!!$F2 822
12 TraesCS3A01G248100 chr2A 760382731 760383406 675 True 872.000000 872 90.304000 154 823 1 chr2A.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 1079 1.586564 GAGTTCCATCGACGCTCGG 60.587 63.158 7.39 0.0 40.88 4.63 F
2148 2264 8.657074 AATTACAAAATTCATGCCTGATGATG 57.343 30.769 0.00 0.0 40.92 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2222 2338 0.187117 TCCAACCAAACCATCCTGCA 59.813 50.0 0.0 0.0 0.0 4.41 R
3777 4342 1.067295 ATCCCAGTCAAGGTTGCAGA 58.933 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 172 4.794439 CGACGCACGAGGCATCCA 62.794 66.667 0.00 0.00 45.17 3.41
416 502 6.410540 AGCATAAAAACCAAACAGAAAACCA 58.589 32.000 0.00 0.00 0.00 3.67
417 503 6.881602 AGCATAAAAACCAAACAGAAAACCAA 59.118 30.769 0.00 0.00 0.00 3.67
418 504 7.391833 AGCATAAAAACCAAACAGAAAACCAAA 59.608 29.630 0.00 0.00 0.00 3.28
419 505 7.483375 GCATAAAAACCAAACAGAAAACCAAAC 59.517 33.333 0.00 0.00 0.00 2.93
420 506 6.944234 AAAAACCAAACAGAAAACCAAACA 57.056 29.167 0.00 0.00 0.00 2.83
421 507 6.552859 AAAACCAAACAGAAAACCAAACAG 57.447 33.333 0.00 0.00 0.00 3.16
422 508 5.476091 AACCAAACAGAAAACCAAACAGA 57.524 34.783 0.00 0.00 0.00 3.41
423 509 5.476091 ACCAAACAGAAAACCAAACAGAA 57.524 34.783 0.00 0.00 0.00 3.02
424 510 5.859495 ACCAAACAGAAAACCAAACAGAAA 58.141 33.333 0.00 0.00 0.00 2.52
425 511 6.292150 ACCAAACAGAAAACCAAACAGAAAA 58.708 32.000 0.00 0.00 0.00 2.29
426 512 6.203915 ACCAAACAGAAAACCAAACAGAAAAC 59.796 34.615 0.00 0.00 0.00 2.43
427 513 6.348132 CCAAACAGAAAACCAAACAGAAAACC 60.348 38.462 0.00 0.00 0.00 3.27
797 906 8.267183 TCATGTGAATGAGACCATACTTATGTT 58.733 33.333 0.00 0.00 31.59 2.71
823 932 2.065899 AGATGAGTTCTAGGCGCTCT 57.934 50.000 7.64 5.38 30.96 4.09
831 940 3.686726 AGTTCTAGGCGCTCTCATTTTTG 59.313 43.478 7.64 0.00 0.00 2.44
832 941 3.610040 TCTAGGCGCTCTCATTTTTGA 57.390 42.857 7.64 0.00 0.00 2.69
833 942 3.937814 TCTAGGCGCTCTCATTTTTGAA 58.062 40.909 7.64 0.00 0.00 2.69
834 943 4.323417 TCTAGGCGCTCTCATTTTTGAAA 58.677 39.130 7.64 0.00 0.00 2.69
835 944 3.565905 AGGCGCTCTCATTTTTGAAAG 57.434 42.857 7.64 0.00 0.00 2.62
836 945 2.229784 AGGCGCTCTCATTTTTGAAAGG 59.770 45.455 7.64 0.00 0.00 3.11
837 946 2.599659 GCGCTCTCATTTTTGAAAGGG 58.400 47.619 0.00 0.00 0.00 3.95
838 947 2.029918 GCGCTCTCATTTTTGAAAGGGT 60.030 45.455 0.00 0.00 0.00 4.34
839 948 3.552890 GCGCTCTCATTTTTGAAAGGGTT 60.553 43.478 0.00 0.00 0.00 4.11
840 949 4.620982 CGCTCTCATTTTTGAAAGGGTTT 58.379 39.130 0.00 0.00 0.00 3.27
841 950 4.681483 CGCTCTCATTTTTGAAAGGGTTTC 59.319 41.667 0.00 0.00 40.08 2.78
842 951 5.507985 CGCTCTCATTTTTGAAAGGGTTTCT 60.508 40.000 1.39 0.00 40.32 2.52
843 952 6.293955 CGCTCTCATTTTTGAAAGGGTTTCTA 60.294 38.462 1.39 0.00 40.32 2.10
844 953 6.863645 GCTCTCATTTTTGAAAGGGTTTCTAC 59.136 38.462 1.39 0.00 40.32 2.59
845 954 7.470009 GCTCTCATTTTTGAAAGGGTTTCTACA 60.470 37.037 1.39 0.00 40.32 2.74
846 955 7.940850 TCTCATTTTTGAAAGGGTTTCTACAG 58.059 34.615 1.39 0.00 40.32 2.74
847 956 6.512297 TCATTTTTGAAAGGGTTTCTACAGC 58.488 36.000 1.39 0.00 40.32 4.40
848 957 5.923733 TTTTTGAAAGGGTTTCTACAGCA 57.076 34.783 1.39 0.00 40.32 4.41
849 958 5.923733 TTTTGAAAGGGTTTCTACAGCAA 57.076 34.783 1.39 0.00 40.32 3.91
850 959 6.478512 TTTTGAAAGGGTTTCTACAGCAAT 57.521 33.333 1.39 0.00 40.32 3.56
851 960 7.589958 TTTTGAAAGGGTTTCTACAGCAATA 57.410 32.000 1.39 0.00 40.32 1.90
852 961 6.569179 TTGAAAGGGTTTCTACAGCAATAC 57.431 37.500 1.39 0.00 40.32 1.89
853 962 5.876357 TGAAAGGGTTTCTACAGCAATACT 58.124 37.500 1.39 0.00 40.32 2.12
854 963 7.011499 TGAAAGGGTTTCTACAGCAATACTA 57.989 36.000 1.39 0.00 40.32 1.82
855 964 7.455058 TGAAAGGGTTTCTACAGCAATACTAA 58.545 34.615 1.39 0.00 40.32 2.24
856 965 7.940137 TGAAAGGGTTTCTACAGCAATACTAAA 59.060 33.333 1.39 0.00 40.32 1.85
857 966 7.683437 AAGGGTTTCTACAGCAATACTAAAC 57.317 36.000 0.00 0.00 0.00 2.01
858 967 6.775708 AGGGTTTCTACAGCAATACTAAACA 58.224 36.000 0.00 0.00 0.00 2.83
859 968 6.879458 AGGGTTTCTACAGCAATACTAAACAG 59.121 38.462 0.00 0.00 0.00 3.16
860 969 6.093633 GGGTTTCTACAGCAATACTAAACAGG 59.906 42.308 0.00 0.00 0.00 4.00
861 970 6.877322 GGTTTCTACAGCAATACTAAACAGGA 59.123 38.462 0.00 0.00 0.00 3.86
862 971 7.389607 GGTTTCTACAGCAATACTAAACAGGAA 59.610 37.037 0.00 0.00 0.00 3.36
863 972 8.443937 GTTTCTACAGCAATACTAAACAGGAAG 58.556 37.037 0.00 0.00 0.00 3.46
864 973 6.640518 TCTACAGCAATACTAAACAGGAAGG 58.359 40.000 0.00 0.00 0.00 3.46
865 974 4.589908 ACAGCAATACTAAACAGGAAGGG 58.410 43.478 0.00 0.00 0.00 3.95
866 975 3.947834 CAGCAATACTAAACAGGAAGGGG 59.052 47.826 0.00 0.00 0.00 4.79
867 976 3.053619 AGCAATACTAAACAGGAAGGGGG 60.054 47.826 0.00 0.00 0.00 5.40
868 977 3.053917 GCAATACTAAACAGGAAGGGGGA 60.054 47.826 0.00 0.00 0.00 4.81
869 978 4.781934 CAATACTAAACAGGAAGGGGGAG 58.218 47.826 0.00 0.00 0.00 4.30
870 979 2.435203 ACTAAACAGGAAGGGGGAGT 57.565 50.000 0.00 0.00 0.00 3.85
871 980 2.714808 ACTAAACAGGAAGGGGGAGTT 58.285 47.619 0.00 0.00 0.00 3.01
872 981 3.061369 ACTAAACAGGAAGGGGGAGTTT 58.939 45.455 0.00 0.00 36.49 2.66
873 982 3.465966 ACTAAACAGGAAGGGGGAGTTTT 59.534 43.478 0.00 0.00 34.58 2.43
874 983 3.414759 AAACAGGAAGGGGGAGTTTTT 57.585 42.857 0.00 0.00 0.00 1.94
970 1079 1.586564 GAGTTCCATCGACGCTCGG 60.587 63.158 7.39 0.00 40.88 4.63
2148 2264 8.657074 AATTACAAAATTCATGCCTGATGATG 57.343 30.769 0.00 0.00 40.92 3.07
2222 2338 1.531423 CAACTCTGGAGTGCAATGCT 58.469 50.000 7.30 0.00 41.58 3.79
2270 2386 3.074412 AGCCTTGGACTAATGTGTTTCG 58.926 45.455 0.00 0.00 0.00 3.46
2279 2395 5.912955 GGACTAATGTGTTTCGAACTTTTGG 59.087 40.000 0.00 0.00 0.00 3.28
2325 2450 4.592485 TGAGGTTCTTGACTGAGAGAAC 57.408 45.455 7.51 7.51 46.90 3.01
2370 2922 5.050490 CGCGGGGGATAGAATTCATAATAG 58.950 45.833 8.44 0.00 0.00 1.73
2940 3496 9.849166 TCTTATGTCATTCAAATACGCGATATA 57.151 29.630 15.93 0.00 0.00 0.86
3088 3644 0.329596 GGGCTTCCAAGACTCATGGT 59.670 55.000 0.28 0.00 39.09 3.55
3419 3975 3.323403 GGTAGAGATGTCCCAGGAATCTG 59.677 52.174 12.97 0.00 40.59 2.90
3464 4029 1.705256 CACACATGTCATTTGCAGCC 58.295 50.000 0.00 0.00 0.00 4.85
3517 4082 4.934356 TCAAGGATCAAATTTACAGGCCT 58.066 39.130 0.00 0.00 0.00 5.19
3518 4083 5.332743 TCAAGGATCAAATTTACAGGCCTT 58.667 37.500 0.00 0.00 35.03 4.35
3564 4129 3.676291 TTCCCTGCATGGCTTTTAAAC 57.324 42.857 2.62 0.00 0.00 2.01
3605 4170 6.296026 TGTTAGTATCATGATAAACCTGGGC 58.704 40.000 16.97 2.62 0.00 5.36
3793 4358 3.616956 TCTATCTGCAACCTTGACTGG 57.383 47.619 0.00 0.00 0.00 4.00
3817 4382 2.172505 TGAACACATGGTTGTCAGGTCT 59.827 45.455 0.00 0.00 38.45 3.85
3825 4390 6.018751 CACATGGTTGTCAGGTCTATTAATCG 60.019 42.308 0.00 0.00 38.45 3.34
3832 4397 4.985409 GTCAGGTCTATTAATCGCAAGGAG 59.015 45.833 0.00 0.00 38.47 3.69
3839 4404 4.672587 ATTAATCGCAAGGAGAGTGCTA 57.327 40.909 0.00 0.00 39.95 3.49
3858 4423 3.734735 GCTATAGTTTTTCTAGCGGACCG 59.265 47.826 10.29 10.29 31.67 4.79
3872 4437 1.753073 CGGACCGGTATTTGGTACTCT 59.247 52.381 7.34 0.00 40.63 3.24
3884 4449 9.694137 GGTATTTGGTACTCTACAGAATCATAC 57.306 37.037 0.00 0.00 33.64 2.39
3923 4488 2.105477 CCTAGTGGGATATGCTTGCTGT 59.895 50.000 0.00 0.00 37.23 4.40
3924 4489 2.048444 AGTGGGATATGCTTGCTGTG 57.952 50.000 0.00 0.00 0.00 3.66
3945 4510 8.715998 GCTGTGATGTTACTTTGATCTATATGG 58.284 37.037 0.00 0.00 0.00 2.74
4127 4698 8.794406 GTTAAAATTATGCATACAGGAACAACG 58.206 33.333 5.74 0.00 0.00 4.10
4132 4703 4.260139 TGCATACAGGAACAACGTTAGA 57.740 40.909 0.00 0.00 0.00 2.10
4304 4877 6.611613 TGCTTTGGATATATAGTGGAGAGG 57.388 41.667 0.00 0.00 0.00 3.69
4371 4948 4.618227 GCGGACTGGAATGCAGTTTTATTT 60.618 41.667 9.18 0.00 32.33 1.40
4374 4951 5.863935 GGACTGGAATGCAGTTTTATTTGAC 59.136 40.000 9.18 0.00 32.33 3.18
4413 4990 0.950836 CGCAACACATGGACAAGGAA 59.049 50.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 172 1.745489 GCCTCGCCGTCTCCAAATT 60.745 57.895 0.00 0.00 0.00 1.82
416 502 4.511826 CAGTTCTCTAGCGGTTTTCTGTTT 59.488 41.667 0.00 0.00 0.00 2.83
417 503 4.058817 CAGTTCTCTAGCGGTTTTCTGTT 58.941 43.478 0.00 0.00 0.00 3.16
418 504 3.654414 CAGTTCTCTAGCGGTTTTCTGT 58.346 45.455 0.00 0.00 0.00 3.41
419 505 2.413453 GCAGTTCTCTAGCGGTTTTCTG 59.587 50.000 0.00 0.00 0.00 3.02
420 506 2.037251 TGCAGTTCTCTAGCGGTTTTCT 59.963 45.455 0.00 0.00 0.00 2.52
421 507 2.157863 GTGCAGTTCTCTAGCGGTTTTC 59.842 50.000 0.00 0.00 0.00 2.29
422 508 2.143925 GTGCAGTTCTCTAGCGGTTTT 58.856 47.619 0.00 0.00 0.00 2.43
423 509 1.070134 TGTGCAGTTCTCTAGCGGTTT 59.930 47.619 0.00 0.00 0.00 3.27
424 510 0.679505 TGTGCAGTTCTCTAGCGGTT 59.320 50.000 0.00 0.00 0.00 4.44
425 511 0.898320 ATGTGCAGTTCTCTAGCGGT 59.102 50.000 0.00 0.00 0.00 5.68
426 512 2.015736 AATGTGCAGTTCTCTAGCGG 57.984 50.000 0.00 0.00 0.00 5.52
427 513 4.033990 TCTAATGTGCAGTTCTCTAGCG 57.966 45.455 0.00 0.00 0.00 4.26
470 556 2.100631 CAAGCAACGTCCGGCCTAG 61.101 63.158 0.00 0.00 0.00 3.02
823 932 6.097554 TGCTGTAGAAACCCTTTCAAAAATGA 59.902 34.615 0.00 0.00 42.10 2.57
831 940 7.916914 TTAGTATTGCTGTAGAAACCCTTTC 57.083 36.000 0.00 0.00 39.96 2.62
832 941 7.722285 TGTTTAGTATTGCTGTAGAAACCCTTT 59.278 33.333 0.00 0.00 0.00 3.11
833 942 7.228590 TGTTTAGTATTGCTGTAGAAACCCTT 58.771 34.615 0.00 0.00 0.00 3.95
834 943 6.775708 TGTTTAGTATTGCTGTAGAAACCCT 58.224 36.000 0.00 0.00 0.00 4.34
835 944 6.093633 CCTGTTTAGTATTGCTGTAGAAACCC 59.906 42.308 0.00 0.00 0.00 4.11
836 945 6.877322 TCCTGTTTAGTATTGCTGTAGAAACC 59.123 38.462 0.00 0.00 0.00 3.27
837 946 7.900782 TCCTGTTTAGTATTGCTGTAGAAAC 57.099 36.000 0.00 0.00 0.00 2.78
838 947 7.606456 CCTTCCTGTTTAGTATTGCTGTAGAAA 59.394 37.037 0.00 0.00 0.00 2.52
839 948 7.103641 CCTTCCTGTTTAGTATTGCTGTAGAA 58.896 38.462 0.00 0.00 0.00 2.10
840 949 6.351881 CCCTTCCTGTTTAGTATTGCTGTAGA 60.352 42.308 0.00 0.00 0.00 2.59
841 950 5.817816 CCCTTCCTGTTTAGTATTGCTGTAG 59.182 44.000 0.00 0.00 0.00 2.74
842 951 5.338871 CCCCTTCCTGTTTAGTATTGCTGTA 60.339 44.000 0.00 0.00 0.00 2.74
843 952 4.567747 CCCCTTCCTGTTTAGTATTGCTGT 60.568 45.833 0.00 0.00 0.00 4.40
844 953 3.947834 CCCCTTCCTGTTTAGTATTGCTG 59.052 47.826 0.00 0.00 0.00 4.41
845 954 3.053619 CCCCCTTCCTGTTTAGTATTGCT 60.054 47.826 0.00 0.00 0.00 3.91
846 955 3.053917 TCCCCCTTCCTGTTTAGTATTGC 60.054 47.826 0.00 0.00 0.00 3.56
847 956 4.227527 ACTCCCCCTTCCTGTTTAGTATTG 59.772 45.833 0.00 0.00 0.00 1.90
848 957 4.445564 ACTCCCCCTTCCTGTTTAGTATT 58.554 43.478 0.00 0.00 0.00 1.89
849 958 4.090027 ACTCCCCCTTCCTGTTTAGTAT 57.910 45.455 0.00 0.00 0.00 2.12
850 959 3.572661 ACTCCCCCTTCCTGTTTAGTA 57.427 47.619 0.00 0.00 0.00 1.82
851 960 2.435203 ACTCCCCCTTCCTGTTTAGT 57.565 50.000 0.00 0.00 0.00 2.24
852 961 3.808834 AAACTCCCCCTTCCTGTTTAG 57.191 47.619 0.00 0.00 0.00 1.85
853 962 4.546224 AAAAACTCCCCCTTCCTGTTTA 57.454 40.909 0.00 0.00 31.67 2.01
854 963 3.414759 AAAAACTCCCCCTTCCTGTTT 57.585 42.857 0.00 0.00 33.04 2.83
910 1019 9.414295 CAGAGATTGCACATAATGAAAGAAAAA 57.586 29.630 0.00 0.00 0.00 1.94
911 1020 8.975410 CAGAGATTGCACATAATGAAAGAAAA 57.025 30.769 0.00 0.00 0.00 2.29
1050 1159 2.690778 GGTGATGCGCTGGTTGTCC 61.691 63.158 9.73 0.00 0.00 4.02
2148 2264 8.938047 CAATTGCAAAATTGTAAGGAATCAAC 57.062 30.769 1.71 0.00 36.26 3.18
2222 2338 0.187117 TCCAACCAAACCATCCTGCA 59.813 50.000 0.00 0.00 0.00 4.41
2270 2386 0.313672 TGCACGCCATCCAAAAGTTC 59.686 50.000 0.00 0.00 0.00 3.01
2279 2395 2.890474 CGTAGGGTGCACGCCATC 60.890 66.667 28.26 17.67 31.94 3.51
2394 2946 6.100404 TCAGTGGCAGCATTAAAAAGAAAT 57.900 33.333 0.00 0.00 0.00 2.17
2940 3496 2.158842 GCATAGTGTTCAGCTCCTGGAT 60.159 50.000 0.00 0.00 31.51 3.41
2983 3539 1.328279 TCTCAAACTGTCCTGCTCGA 58.672 50.000 0.00 0.00 0.00 4.04
3088 3644 3.222173 AGTTCACCCAACTGCACATTA 57.778 42.857 0.00 0.00 44.28 1.90
3419 3975 5.930135 TGAAGAGTATGAAAAGCCCTATCC 58.070 41.667 0.00 0.00 0.00 2.59
3464 4029 7.140705 CAGACAGATACTCTAATTGAGCAGAG 58.859 42.308 2.07 2.07 46.41 3.35
3475 4040 4.514401 TGAACTCGCAGACAGATACTCTA 58.486 43.478 0.00 0.00 0.00 2.43
3490 4055 6.546395 CCTGTAAATTTGATCCTTGAACTCG 58.454 40.000 0.00 0.00 0.00 4.18
3517 4082 6.878923 CCATGTACCTGAGACAAACAATCTAA 59.121 38.462 0.00 0.00 0.00 2.10
3518 4083 6.212589 TCCATGTACCTGAGACAAACAATCTA 59.787 38.462 0.00 0.00 0.00 1.98
3564 4129 6.137794 ACTAACATCCATTAGACTCGTCTG 57.862 41.667 9.73 0.00 40.71 3.51
3777 4342 1.067295 ATCCCAGTCAAGGTTGCAGA 58.933 50.000 0.00 0.00 0.00 4.26
3793 4358 2.489329 CCTGACAACCATGTGTTCATCC 59.511 50.000 0.00 0.00 40.74 3.51
3817 4382 4.672587 AGCACTCTCCTTGCGATTAATA 57.327 40.909 0.00 0.00 45.15 0.98
3825 4390 5.877564 AGAAAAACTATAGCACTCTCCTTGC 59.122 40.000 0.00 0.00 40.52 4.01
3832 4397 5.459434 GTCCGCTAGAAAAACTATAGCACTC 59.541 44.000 0.00 0.00 41.60 3.51
3839 4404 2.498885 ACCGGTCCGCTAGAAAAACTAT 59.501 45.455 0.00 0.00 0.00 2.12
3858 4423 9.694137 GTATGATTCTGTAGAGTACCAAATACC 57.306 37.037 0.00 0.00 33.85 2.73
3884 4449 7.255242 CCCACTAGGCAATGTCTAAAATACATG 60.255 40.741 0.00 0.00 37.62 3.21
3902 4467 2.105477 ACAGCAAGCATATCCCACTAGG 59.895 50.000 0.00 0.00 0.00 3.02
3923 4488 9.987272 CTGTCCATATAGATCAAAGTAACATCA 57.013 33.333 0.00 0.00 0.00 3.07
3945 4510 4.081917 CAGAGGTCTAAAGTCCCTTCTGTC 60.082 50.000 5.11 0.00 0.00 3.51
3967 4532 8.622157 TCCTTTGTTAACGATGTAAATTTCACA 58.378 29.630 0.26 0.00 0.00 3.58
4093 4664 7.546358 TGTATGCATAATTTTAACTTGCTGCT 58.454 30.769 8.28 0.00 34.47 4.24
4220 4793 3.599343 CAGCAGCTAGACCAATGTTGTA 58.401 45.455 0.00 0.00 0.00 2.41
4389 4966 1.674359 TGTCCATGTGTTGCGAGTTT 58.326 45.000 0.00 0.00 0.00 2.66
4395 4972 1.956477 ACTTCCTTGTCCATGTGTTGC 59.044 47.619 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.