Multiple sequence alignment - TraesCS3A01G247900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G247900 chr3A 100.000 5799 0 0 1 5799 466038716 466044514 0.000000e+00 10709.0
1 TraesCS3A01G247900 chr3A 88.393 448 26 8 4914 5352 740072891 740073321 3.100000e-142 516.0
2 TraesCS3A01G247900 chr3A 97.426 272 5 2 1810 2080 449473481 449473211 4.090000e-126 462.0
3 TraesCS3A01G247900 chr3A 79.021 143 23 4 3316 3454 466041485 466041624 2.230000e-14 91.6
4 TraesCS3A01G247900 chr3A 79.021 143 23 4 2770 2909 466042031 466042169 2.230000e-14 91.6
5 TraesCS3A01G247900 chr3D 94.905 2159 83 14 3656 5799 346840649 346842795 0.000000e+00 3352.0
6 TraesCS3A01G247900 chr3D 82.744 962 68 44 729 1634 346838113 346839032 0.000000e+00 767.0
7 TraesCS3A01G247900 chr3D 88.946 588 63 2 1 588 282931674 282931089 0.000000e+00 725.0
8 TraesCS3A01G247900 chr3D 83.716 479 44 10 3206 3653 346840128 346840603 6.950000e-114 422.0
9 TraesCS3A01G247900 chr3D 91.597 238 9 3 3093 3319 346839874 346840111 9.380000e-83 318.0
10 TraesCS3A01G247900 chr3D 82.927 287 33 10 2663 2942 346839592 346839869 1.610000e-60 244.0
11 TraesCS3A01G247900 chr3D 84.024 169 24 2 3288 3454 346839670 346839837 6.010000e-35 159.0
12 TraesCS3A01G247900 chr3D 85.811 148 16 3 2263 2405 346839168 346839315 1.010000e-32 152.0
13 TraesCS3A01G247900 chr3D 76.398 161 23 8 2794 2945 346840271 346840425 8.060000e-09 73.1
14 TraesCS3A01G247900 chr3B 92.531 1513 62 11 3656 5136 446692526 446694019 0.000000e+00 2121.0
15 TraesCS3A01G247900 chr3B 94.754 896 29 10 4915 5799 446694340 446695228 0.000000e+00 1378.0
16 TraesCS3A01G247900 chr3B 93.343 706 25 3 2261 2945 446691179 446691883 0.000000e+00 1024.0
17 TraesCS3A01G247900 chr3B 89.788 803 45 21 1036 1816 446690278 446691065 0.000000e+00 994.0
18 TraesCS3A01G247900 chr3B 93.432 609 9 4 3068 3653 446691881 446692481 0.000000e+00 874.0
19 TraesCS3A01G247900 chr3B 88.914 451 21 11 4914 5352 173620306 173619873 3.980000e-146 529.0
20 TraesCS3A01G247900 chr3B 85.965 285 14 7 585 846 446689944 446690225 1.230000e-71 281.0
21 TraesCS3A01G247900 chr3B 92.857 140 6 4 2943 3079 106972711 106972573 3.540000e-47 200.0
22 TraesCS3A01G247900 chr3B 75.297 421 47 25 3260 3649 446691641 446692035 1.300000e-31 148.0
23 TraesCS3A01G247900 chr7A 90.427 585 54 2 1 584 537516638 537516055 0.000000e+00 769.0
24 TraesCS3A01G247900 chr7A 89.038 447 21 10 4917 5352 480549831 480549402 3.980000e-146 529.0
25 TraesCS3A01G247900 chr7A 98.113 265 5 0 1814 2078 608588393 608588657 4.090000e-126 462.0
26 TraesCS3A01G247900 chrUn 90.674 579 50 3 7 585 280053036 280053610 0.000000e+00 767.0
27 TraesCS3A01G247900 chr2A 90.674 579 50 3 7 585 582828084 582828658 0.000000e+00 767.0
28 TraesCS3A01G247900 chr2A 97.268 183 1 3 2081 2260 88796219 88796038 2.030000e-79 307.0
29 TraesCS3A01G247900 chr2A 96.277 188 3 3 2078 2261 278996254 278996441 7.300000e-79 305.0
30 TraesCS3A01G247900 chr2A 96.257 187 4 2 2079 2262 680510171 680509985 2.630000e-78 303.0
31 TraesCS3A01G247900 chr2A 95.767 189 5 2 2081 2266 756213674 756213862 9.440000e-78 302.0
32 TraesCS3A01G247900 chr2A 93.571 140 5 4 2940 3076 746977111 746976973 7.620000e-49 206.0
33 TraesCS3A01G247900 chr5B 86.815 584 76 1 1 584 301564244 301563662 0.000000e+00 651.0
34 TraesCS3A01G247900 chr5B 80.943 530 88 9 61 585 513378937 513378416 1.950000e-109 407.0
35 TraesCS3A01G247900 chr4D 88.662 538 32 14 4914 5438 80237356 80236835 3.810000e-176 628.0
36 TraesCS3A01G247900 chr4D 87.638 542 36 13 4914 5441 203907203 203906679 8.310000e-168 601.0
37 TraesCS3A01G247900 chr5D 88.333 540 30 13 4914 5438 47935155 47935676 8.260000e-173 617.0
38 TraesCS3A01G247900 chr2D 88.333 540 30 15 4914 5438 208323144 208322623 8.260000e-173 617.0
39 TraesCS3A01G247900 chr2D 96.094 128 5 0 2944 3071 100314031 100314158 5.890000e-50 209.0
40 TraesCS3A01G247900 chr2D 94.118 136 6 2 2937 3071 619720679 619720545 7.620000e-49 206.0
41 TraesCS3A01G247900 chr7D 89.528 487 22 12 4964 5438 550594561 550595030 1.800000e-164 590.0
42 TraesCS3A01G247900 chr1B 87.384 539 37 13 4914 5438 59089964 59090485 1.800000e-164 590.0
43 TraesCS3A01G247900 chr1B 84.564 447 51 12 1814 2255 185075898 185076331 1.490000e-115 427.0
44 TraesCS3A01G247900 chr1B 93.617 141 7 2 2943 3082 409879936 409879797 5.890000e-50 209.0
45 TraesCS3A01G247900 chr1B 92.958 142 8 2 2944 3083 286319950 286320091 7.620000e-49 206.0
46 TraesCS3A01G247900 chr5A 88.798 491 27 10 4914 5393 183359710 183359237 1.400000e-160 577.0
47 TraesCS3A01G247900 chr5A 98.485 264 4 0 1815 2078 375823844 375824107 3.160000e-127 466.0
48 TraesCS3A01G247900 chr5A 98.467 261 4 0 1818 2078 83115567 83115307 1.470000e-125 460.0
49 TraesCS3A01G247900 chr5A 96.296 270 8 2 1812 2080 673772066 673771798 5.330000e-120 442.0
50 TraesCS3A01G247900 chr5A 95.767 189 5 2 2076 2261 570367108 570366920 9.440000e-78 302.0
51 TraesCS3A01G247900 chr1D 83.793 580 89 4 7 585 478022558 478023133 3.950000e-151 545.0
52 TraesCS3A01G247900 chr7B 89.111 450 23 13 4914 5352 173305998 173306432 2.380000e-148 536.0
53 TraesCS3A01G247900 chr7B 80.272 588 108 7 1 585 2748145 2748727 2.480000e-118 436.0
54 TraesCS3A01G247900 chr4A 82.705 584 91 8 7 585 577539609 577539031 1.440000e-140 510.0
55 TraesCS3A01G247900 chr4A 97.814 183 1 2 2082 2261 11366204 11366022 4.360000e-81 313.0
56 TraesCS3A01G247900 chr4A 93.525 139 9 0 2932 3070 477881894 477881756 2.120000e-49 207.0
57 TraesCS3A01G247900 chr6A 97.753 267 5 1 1812 2077 12480362 12480096 5.300000e-125 459.0
58 TraesCS3A01G247900 chr6A 96.642 268 8 1 1812 2079 440146800 440147066 1.480000e-120 444.0
59 TraesCS3A01G247900 chr6A 97.826 184 1 2 2082 2262 180309339 180309156 1.210000e-81 315.0
60 TraesCS3A01G247900 chr1A 97.727 264 5 1 1815 2078 117242958 117243220 2.460000e-123 453.0
61 TraesCS3A01G247900 chr1A 97.297 185 2 2 2081 2262 398058669 398058485 1.570000e-80 311.0
62 TraesCS3A01G247900 chr1A 94.737 133 7 0 2938 3070 415644523 415644655 2.120000e-49 207.0
63 TraesCS3A01G247900 chr6B 94.656 131 7 0 2943 3073 18270505 18270635 2.740000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G247900 chr3A 466038716 466044514 5798 False 3630.733333 10709 86.014000 1 5799 3 chr3A.!!$F2 5798
1 TraesCS3A01G247900 chr3D 282931089 282931674 585 True 725.000000 725 88.946000 1 588 1 chr3D.!!$R1 587
2 TraesCS3A01G247900 chr3D 346838113 346842795 4682 False 685.887500 3352 85.265250 729 5799 8 chr3D.!!$F1 5070
3 TraesCS3A01G247900 chr3B 446689944 446695228 5284 False 974.285714 2121 89.301429 585 5799 7 chr3B.!!$F1 5214
4 TraesCS3A01G247900 chr7A 537516055 537516638 583 True 769.000000 769 90.427000 1 584 1 chr7A.!!$R2 583
5 TraesCS3A01G247900 chrUn 280053036 280053610 574 False 767.000000 767 90.674000 7 585 1 chrUn.!!$F1 578
6 TraesCS3A01G247900 chr2A 582828084 582828658 574 False 767.000000 767 90.674000 7 585 1 chr2A.!!$F2 578
7 TraesCS3A01G247900 chr5B 301563662 301564244 582 True 651.000000 651 86.815000 1 584 1 chr5B.!!$R1 583
8 TraesCS3A01G247900 chr5B 513378416 513378937 521 True 407.000000 407 80.943000 61 585 1 chr5B.!!$R2 524
9 TraesCS3A01G247900 chr4D 80236835 80237356 521 True 628.000000 628 88.662000 4914 5438 1 chr4D.!!$R1 524
10 TraesCS3A01G247900 chr4D 203906679 203907203 524 True 601.000000 601 87.638000 4914 5441 1 chr4D.!!$R2 527
11 TraesCS3A01G247900 chr5D 47935155 47935676 521 False 617.000000 617 88.333000 4914 5438 1 chr5D.!!$F1 524
12 TraesCS3A01G247900 chr2D 208322623 208323144 521 True 617.000000 617 88.333000 4914 5438 1 chr2D.!!$R1 524
13 TraesCS3A01G247900 chr1B 59089964 59090485 521 False 590.000000 590 87.384000 4914 5438 1 chr1B.!!$F1 524
14 TraesCS3A01G247900 chr1D 478022558 478023133 575 False 545.000000 545 83.793000 7 585 1 chr1D.!!$F1 578
15 TraesCS3A01G247900 chr7B 2748145 2748727 582 False 436.000000 436 80.272000 1 585 1 chr7B.!!$F1 584
16 TraesCS3A01G247900 chr4A 577539031 577539609 578 True 510.000000 510 82.705000 7 585 1 chr4A.!!$R3 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 885 0.390866 CGCTCATCTCACAACAGGCT 60.391 55.0 0.00 0.00 0.00 4.58 F
1474 1544 0.179124 ATCTCTGCTCGCCTTTCGTC 60.179 55.0 0.00 0.00 39.67 4.20 F
2099 2197 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.0 18.92 18.25 46.66 3.06 F
3067 3272 0.179065 GTATTTTCGGACGGAGGGGG 60.179 60.0 0.00 0.00 0.00 5.40 F
3726 4144 0.394938 TGTAAAGTTCAGCTCCCGCA 59.605 50.0 0.00 0.00 39.10 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 2176 0.840288 TGTGCCCTAGACACACCCAT 60.840 55.0 12.81 0.0 42.88 4.00 R
3048 3253 0.179065 CCCCCTCCGTCCGAAAATAC 60.179 60.0 0.00 0.0 0.00 1.89 R
3831 4249 0.179097 GTCTGGATCTCGCCAAGGAC 60.179 60.0 0.00 0.0 37.52 3.85 R
4592 5015 0.401738 AAGGTGGTGGTGGTCTCATG 59.598 55.0 0.00 0.0 0.00 3.07 R
4911 5349 0.514691 CAGCAAGCGAGGACAAGTTC 59.485 55.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 0.527600 CTATACGTGCTTGCAGGCGA 60.528 55.000 16.68 2.53 34.52 5.54
159 160 1.681666 CTCAGGAGGTGTGGCACAT 59.318 57.895 24.95 8.79 44.52 3.21
165 166 1.676014 GGAGGTGTGGCACATAGTGTC 60.676 57.143 24.95 14.83 44.52 3.67
182 183 1.087501 GTCCGGCCTTCTTCACATTC 58.912 55.000 0.00 0.00 0.00 2.67
204 205 0.550147 ATACAAGGGCCACTGGAGGT 60.550 55.000 6.18 0.00 0.00 3.85
342 344 2.636830 CAGAGTATTCAACAGGGCCAG 58.363 52.381 6.18 0.00 0.00 4.85
355 357 1.527433 GGGCCAGTGAGCAAAAGACC 61.527 60.000 4.39 0.00 0.00 3.85
372 374 2.165301 CCGCGTTCGACCTTCCATC 61.165 63.158 4.92 0.00 38.10 3.51
468 471 7.120051 AGAAGTTAGTCTAAGATAGTGAGGCA 58.880 38.462 0.00 0.00 0.00 4.75
481 484 1.447140 GAGGCATTGGTGTCGCGTA 60.447 57.895 5.77 0.00 34.36 4.42
537 543 8.827677 GGACGCAATCTTGTAATTATACTTCTT 58.172 33.333 0.00 0.00 32.98 2.52
538 544 9.851043 GACGCAATCTTGTAATTATACTTCTTC 57.149 33.333 0.00 0.00 32.98 2.87
579 585 3.055094 ACACCTTTGGCATACTCTCGAAT 60.055 43.478 0.00 0.00 0.00 3.34
586 592 7.065803 CCTTTGGCATACTCTCGAATAAAAAGA 59.934 37.037 0.00 0.00 0.00 2.52
656 662 4.988716 TGTGGGGCGTCTCCGACT 62.989 66.667 0.00 0.00 43.49 4.18
657 663 4.131088 GTGGGGCGTCTCCGACTC 62.131 72.222 0.00 0.00 45.45 3.36
659 665 3.827898 GGGGCGTCTCCGACTCAG 61.828 72.222 0.00 0.00 44.25 3.35
661 667 2.341101 GGGCGTCTCCGACTCAGAA 61.341 63.158 0.00 0.00 43.49 3.02
666 689 1.400371 CGTCTCCGACTCAGAACTGTG 60.400 57.143 1.73 2.37 35.63 3.66
743 772 1.679032 CCGTCCTCATCAACCCTTTCC 60.679 57.143 0.00 0.00 0.00 3.13
764 793 3.355378 CCCAAGCAAACATAGACCATCA 58.645 45.455 0.00 0.00 0.00 3.07
765 794 3.956199 CCCAAGCAAACATAGACCATCAT 59.044 43.478 0.00 0.00 0.00 2.45
769 800 2.887152 GCAAACATAGACCATCATCCCC 59.113 50.000 0.00 0.00 0.00 4.81
834 868 1.491505 GGCAAAGAGATCTACGCCGC 61.492 60.000 0.00 0.00 34.88 6.53
851 885 0.390866 CGCTCATCTCACAACAGGCT 60.391 55.000 0.00 0.00 0.00 4.58
881 933 2.032054 TCGACGCCGTTATAAGTAGTGG 59.968 50.000 0.00 0.00 37.05 4.00
883 935 1.753073 ACGCCGTTATAAGTAGTGGCT 59.247 47.619 0.00 0.00 40.31 4.75
904 956 0.548510 CCTTCCAGTTCCATCCCTCC 59.451 60.000 0.00 0.00 0.00 4.30
908 960 1.995626 CAGTTCCATCCCTCCCCGT 60.996 63.158 0.00 0.00 0.00 5.28
912 964 4.499116 CCATCCCTCCCCGTCCCT 62.499 72.222 0.00 0.00 0.00 4.20
929 981 4.939368 TCCAAACCCACGCCACCG 62.939 66.667 0.00 0.00 41.14 4.94
980 1036 3.062466 CCGCTGTCTGGTCCTCGA 61.062 66.667 0.00 0.00 0.00 4.04
986 1042 2.035155 TCTGGTCCTCGAGCCGAA 59.965 61.111 6.99 0.00 34.74 4.30
989 1045 4.493747 GGTCCTCGAGCCGAACCG 62.494 72.222 6.99 0.00 34.74 4.44
1008 1064 2.764128 TCTCCTCCCATGGCGGAC 60.764 66.667 14.99 0.00 36.56 4.79
1009 1065 3.866582 CTCCTCCCATGGCGGACC 61.867 72.222 14.99 0.00 36.56 4.46
1025 1081 4.493747 CCCGGTCGACGCTCCTTC 62.494 72.222 9.92 0.00 42.52 3.46
1026 1082 4.493747 CCGGTCGACGCTCCTTCC 62.494 72.222 9.92 0.00 42.52 3.46
1027 1083 3.744719 CGGTCGACGCTCCTTCCA 61.745 66.667 9.92 0.00 34.82 3.53
1028 1084 2.654877 GGTCGACGCTCCTTCCAA 59.345 61.111 9.92 0.00 0.00 3.53
1029 1085 1.446272 GGTCGACGCTCCTTCCAAG 60.446 63.158 9.92 0.00 0.00 3.61
1030 1086 2.095252 GTCGACGCTCCTTCCAAGC 61.095 63.158 0.00 0.00 36.38 4.01
1031 1087 2.815647 CGACGCTCCTTCCAAGCC 60.816 66.667 0.00 0.00 36.36 4.35
1032 1088 2.815647 GACGCTCCTTCCAAGCCG 60.816 66.667 0.00 0.00 36.36 5.52
1033 1089 3.296709 GACGCTCCTTCCAAGCCGA 62.297 63.158 0.00 0.00 36.36 5.54
1034 1090 2.815647 CGCTCCTTCCAAGCCGAC 60.816 66.667 0.00 0.00 36.36 4.79
1371 1434 3.149196 TGGTGGTTTTGCAGATCTTCTC 58.851 45.455 0.00 0.00 0.00 2.87
1398 1461 1.804748 GATTTCACCACGGACCAGAAC 59.195 52.381 0.00 0.00 0.00 3.01
1439 1509 2.159627 CCGCAAATGGAACTGTGAGTAC 59.840 50.000 0.00 0.00 0.00 2.73
1440 1510 3.067106 CGCAAATGGAACTGTGAGTACT 58.933 45.455 0.00 0.00 0.00 2.73
1441 1511 3.120546 CGCAAATGGAACTGTGAGTACTG 60.121 47.826 0.00 0.00 0.00 2.74
1442 1512 4.065088 GCAAATGGAACTGTGAGTACTGA 58.935 43.478 0.00 0.00 0.00 3.41
1443 1513 4.153117 GCAAATGGAACTGTGAGTACTGAG 59.847 45.833 0.00 0.00 0.00 3.35
1444 1514 5.300752 CAAATGGAACTGTGAGTACTGAGT 58.699 41.667 0.00 0.00 0.00 3.41
1445 1515 6.455647 CAAATGGAACTGTGAGTACTGAGTA 58.544 40.000 0.00 0.00 0.00 2.59
1446 1516 5.906113 ATGGAACTGTGAGTACTGAGTAG 57.094 43.478 0.00 0.00 0.00 2.57
1447 1517 4.726583 TGGAACTGTGAGTACTGAGTAGT 58.273 43.478 0.00 0.00 40.99 2.73
1448 1518 5.872963 TGGAACTGTGAGTACTGAGTAGTA 58.127 41.667 0.00 0.00 38.36 1.82
1467 1537 0.382515 AGTAACGATCTCTGCTCGCC 59.617 55.000 0.00 0.00 39.71 5.54
1474 1544 0.179124 ATCTCTGCTCGCCTTTCGTC 60.179 55.000 0.00 0.00 39.67 4.20
1486 1556 1.525619 CCTTTCGTCGTTTCCTGTCAC 59.474 52.381 0.00 0.00 0.00 3.67
1529 1622 6.589907 GGCAGTTTATAATTGTTTGAGTTGGG 59.410 38.462 0.00 0.00 0.00 4.12
1539 1632 5.560722 TGTTTGAGTTGGGTTCTAGATGA 57.439 39.130 0.00 0.00 0.00 2.92
1577 1670 3.620427 TGAGGTGTTGTGTTGTGTAGT 57.380 42.857 0.00 0.00 0.00 2.73
1583 1676 2.160615 TGTTGTGTTGTGTAGTGTGCAC 59.839 45.455 10.75 10.75 37.37 4.57
1592 1690 1.337728 TGTAGTGTGCACAGGATTCGG 60.338 52.381 22.40 0.00 0.00 4.30
1747 1845 3.191888 AGAGTAGTTGGTGGATGAGGT 57.808 47.619 0.00 0.00 0.00 3.85
1757 1855 3.779738 TGGTGGATGAGGTGTGATATTGA 59.220 43.478 0.00 0.00 0.00 2.57
1761 1859 4.202295 TGGATGAGGTGTGATATTGAGCTC 60.202 45.833 6.82 6.82 35.29 4.09
1816 1914 6.736123 TGTCTCGGATGCTCTAGTTTATTAC 58.264 40.000 0.00 0.00 0.00 1.89
1817 1915 6.546403 TGTCTCGGATGCTCTAGTTTATTACT 59.454 38.462 0.00 0.00 41.04 2.24
1818 1916 7.079475 GTCTCGGATGCTCTAGTTTATTACTC 58.921 42.308 0.00 0.00 38.33 2.59
1819 1917 6.207025 TCTCGGATGCTCTAGTTTATTACTCC 59.793 42.308 0.00 0.00 38.33 3.85
1820 1918 5.243283 TCGGATGCTCTAGTTTATTACTCCC 59.757 44.000 0.00 0.00 38.33 4.30
1821 1919 5.244178 CGGATGCTCTAGTTTATTACTCCCT 59.756 44.000 0.00 0.00 38.33 4.20
1822 1920 6.570764 CGGATGCTCTAGTTTATTACTCCCTC 60.571 46.154 0.00 0.00 38.33 4.30
1823 1921 6.295405 GGATGCTCTAGTTTATTACTCCCTCC 60.295 46.154 0.00 0.00 38.33 4.30
1825 1923 4.583907 GCTCTAGTTTATTACTCCCTCCGT 59.416 45.833 0.00 0.00 38.33 4.69
1826 1924 5.068855 GCTCTAGTTTATTACTCCCTCCGTT 59.931 44.000 0.00 0.00 38.33 4.44
1828 1926 4.750021 AGTTTATTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 28.23 3.62
1830 1928 4.781621 AGTTTATTACTCCCTCCGTTCCTT 59.218 41.667 0.00 0.00 28.23 3.36
1831 1929 4.748277 TTATTACTCCCTCCGTTCCTTG 57.252 45.455 0.00 0.00 0.00 3.61
1833 1931 2.544844 TACTCCCTCCGTTCCTTGAT 57.455 50.000 0.00 0.00 0.00 2.57
1834 1932 2.544844 ACTCCCTCCGTTCCTTGATA 57.455 50.000 0.00 0.00 0.00 2.15
1836 1934 4.194678 ACTCCCTCCGTTCCTTGATATA 57.805 45.455 0.00 0.00 0.00 0.86
1837 1935 4.553678 ACTCCCTCCGTTCCTTGATATAA 58.446 43.478 0.00 0.00 0.00 0.98
1838 1936 4.589374 ACTCCCTCCGTTCCTTGATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
1841 1939 4.503296 CCCTCCGTTCCTTGATATAAGGTG 60.503 50.000 5.67 0.00 38.55 4.00
1842 1940 4.101119 CCTCCGTTCCTTGATATAAGGTGT 59.899 45.833 5.67 0.00 38.55 4.16
1843 1941 5.303589 CCTCCGTTCCTTGATATAAGGTGTA 59.696 44.000 5.67 0.00 38.55 2.90
1844 1942 6.014499 CCTCCGTTCCTTGATATAAGGTGTAT 60.014 42.308 5.67 0.00 38.55 2.29
1845 1943 7.177921 CCTCCGTTCCTTGATATAAGGTGTATA 59.822 40.741 5.67 0.00 38.55 1.47
1846 1944 8.118976 TCCGTTCCTTGATATAAGGTGTATAG 57.881 38.462 5.67 0.00 38.55 1.31
1847 1945 7.946219 TCCGTTCCTTGATATAAGGTGTATAGA 59.054 37.037 5.67 0.00 38.55 1.98
1848 1946 8.750298 CCGTTCCTTGATATAAGGTGTATAGAT 58.250 37.037 5.67 0.00 38.55 1.98
1884 1982 9.869757 AAAGTTCAAAATATAAGGTGTATTGCC 57.130 29.630 0.00 0.00 0.00 4.52
1885 1983 8.823220 AGTTCAAAATATAAGGTGTATTGCCT 57.177 30.769 0.00 0.00 38.11 4.75
1886 1984 9.255029 AGTTCAAAATATAAGGTGTATTGCCTT 57.745 29.630 2.07 2.07 46.90 4.35
1887 1985 9.301153 GTTCAAAATATAAGGTGTATTGCCTTG 57.699 33.333 6.83 0.00 45.14 3.61
1889 1987 7.123397 TCAAAATATAAGGTGTATTGCCTTGCA 59.877 33.333 6.83 0.00 45.14 4.08
1890 1988 6.391227 AATATAAGGTGTATTGCCTTGCAC 57.609 37.500 6.83 0.00 45.14 4.57
1893 1991 3.792716 GTGTATTGCCTTGCACCAC 57.207 52.632 0.00 0.00 38.71 4.16
1894 1992 1.247567 GTGTATTGCCTTGCACCACT 58.752 50.000 0.00 0.00 38.71 4.00
1895 1993 1.200020 GTGTATTGCCTTGCACCACTC 59.800 52.381 0.00 0.00 38.71 3.51
1896 1994 1.202867 TGTATTGCCTTGCACCACTCA 60.203 47.619 0.00 0.00 38.71 3.41
1897 1995 2.094675 GTATTGCCTTGCACCACTCAT 58.905 47.619 0.00 0.00 38.71 2.90
1899 1997 1.412079 TTGCCTTGCACCACTCATTT 58.588 45.000 0.00 0.00 38.71 2.32
1902 2000 1.340889 GCCTTGCACCACTCATTTGAA 59.659 47.619 0.00 0.00 0.00 2.69
1907 2005 5.047802 CCTTGCACCACTCATTTGAATAACT 60.048 40.000 0.00 0.00 0.00 2.24
1908 2006 6.403866 TTGCACCACTCATTTGAATAACTT 57.596 33.333 0.00 0.00 0.00 2.66
1910 2008 6.815089 TGCACCACTCATTTGAATAACTTTT 58.185 32.000 0.00 0.00 0.00 2.27
1911 2009 7.271511 TGCACCACTCATTTGAATAACTTTTT 58.728 30.769 0.00 0.00 0.00 1.94
1913 2011 9.255304 GCACCACTCATTTGAATAACTTTTTAA 57.745 29.630 0.00 0.00 0.00 1.52
1915 2013 9.981114 ACCACTCATTTGAATAACTTTTTAAGG 57.019 29.630 0.00 0.00 0.00 2.69
1937 2035 8.893563 AAGGGATTTGATTACATTTCCTTACA 57.106 30.769 0.00 0.00 31.95 2.41
1938 2036 9.492730 AAGGGATTTGATTACATTTCCTTACAT 57.507 29.630 0.00 0.00 31.95 2.29
1943 2041 7.817418 TTGATTACATTTCCTTACATAGGGC 57.183 36.000 0.00 0.00 44.86 5.19
1944 2042 6.905736 TGATTACATTTCCTTACATAGGGCA 58.094 36.000 0.00 0.00 44.86 5.36
1945 2043 7.350382 TGATTACATTTCCTTACATAGGGCAA 58.650 34.615 0.00 0.00 44.86 4.52
1946 2044 7.502226 TGATTACATTTCCTTACATAGGGCAAG 59.498 37.037 0.00 0.00 44.86 4.01
1947 2045 3.954258 ACATTTCCTTACATAGGGCAAGC 59.046 43.478 0.00 0.00 44.86 4.01
1948 2046 4.210331 CATTTCCTTACATAGGGCAAGCT 58.790 43.478 0.00 0.00 44.86 3.74
1949 2047 3.560636 TTCCTTACATAGGGCAAGCTC 57.439 47.619 0.00 0.00 44.86 4.09
1950 2048 1.768870 TCCTTACATAGGGCAAGCTCC 59.231 52.381 0.00 0.00 44.86 4.70
1951 2049 1.771255 CCTTACATAGGGCAAGCTCCT 59.229 52.381 7.16 7.16 40.67 3.69
1952 2050 2.224402 CCTTACATAGGGCAAGCTCCTC 60.224 54.545 5.53 0.00 40.67 3.71
1953 2051 2.478872 TACATAGGGCAAGCTCCTCT 57.521 50.000 5.53 0.00 35.92 3.69
1954 2052 2.478872 ACATAGGGCAAGCTCCTCTA 57.521 50.000 5.53 0.00 35.92 2.43
1955 2053 2.983296 ACATAGGGCAAGCTCCTCTAT 58.017 47.619 5.53 0.00 35.92 1.98
1956 2054 3.321950 ACATAGGGCAAGCTCCTCTATT 58.678 45.455 4.44 0.00 35.92 1.73
1957 2055 3.718956 ACATAGGGCAAGCTCCTCTATTT 59.281 43.478 4.44 0.00 35.92 1.40
1958 2056 4.166919 ACATAGGGCAAGCTCCTCTATTTT 59.833 41.667 4.44 0.00 35.92 1.82
1959 2057 3.289407 AGGGCAAGCTCCTCTATTTTC 57.711 47.619 0.00 0.00 0.00 2.29
1960 2058 2.849318 AGGGCAAGCTCCTCTATTTTCT 59.151 45.455 0.00 0.00 0.00 2.52
1961 2059 3.118075 AGGGCAAGCTCCTCTATTTTCTC 60.118 47.826 0.00 0.00 0.00 2.87
1962 2060 3.370953 GGGCAAGCTCCTCTATTTTCTCA 60.371 47.826 0.00 0.00 0.00 3.27
1963 2061 4.459330 GGCAAGCTCCTCTATTTTCTCAT 58.541 43.478 0.00 0.00 0.00 2.90
1964 2062 5.455326 GGGCAAGCTCCTCTATTTTCTCATA 60.455 44.000 0.00 0.00 0.00 2.15
1965 2063 6.237154 GGCAAGCTCCTCTATTTTCTCATAT 58.763 40.000 0.00 0.00 0.00 1.78
1966 2064 6.714356 GGCAAGCTCCTCTATTTTCTCATATT 59.286 38.462 0.00 0.00 0.00 1.28
1967 2065 7.880195 GGCAAGCTCCTCTATTTTCTCATATTA 59.120 37.037 0.00 0.00 0.00 0.98
1968 2066 9.277783 GCAAGCTCCTCTATTTTCTCATATTAA 57.722 33.333 0.00 0.00 0.00 1.40
1989 2087 7.859325 TTAATTAGTCAGGTGTAATCTTGCC 57.141 36.000 0.00 0.00 0.00 4.52
1990 2088 2.789409 AGTCAGGTGTAATCTTGCCC 57.211 50.000 0.00 0.00 0.00 5.36
1991 2089 1.985159 AGTCAGGTGTAATCTTGCCCA 59.015 47.619 0.00 0.00 0.00 5.36
1992 2090 2.375174 AGTCAGGTGTAATCTTGCCCAA 59.625 45.455 0.00 0.00 0.00 4.12
1993 2091 3.153919 GTCAGGTGTAATCTTGCCCAAA 58.846 45.455 0.00 0.00 0.00 3.28
1994 2092 3.572255 GTCAGGTGTAATCTTGCCCAAAA 59.428 43.478 0.00 0.00 0.00 2.44
1995 2093 3.572255 TCAGGTGTAATCTTGCCCAAAAC 59.428 43.478 0.00 0.00 0.00 2.43
1996 2094 3.573967 CAGGTGTAATCTTGCCCAAAACT 59.426 43.478 0.00 0.00 0.00 2.66
1997 2095 4.039124 CAGGTGTAATCTTGCCCAAAACTT 59.961 41.667 0.00 0.00 0.00 2.66
1998 2096 4.039124 AGGTGTAATCTTGCCCAAAACTTG 59.961 41.667 0.00 0.00 0.00 3.16
1999 2097 4.202212 GGTGTAATCTTGCCCAAAACTTGT 60.202 41.667 0.00 0.00 0.00 3.16
2000 2098 4.744631 GTGTAATCTTGCCCAAAACTTGTG 59.255 41.667 0.00 0.00 0.00 3.33
2001 2099 4.646945 TGTAATCTTGCCCAAAACTTGTGA 59.353 37.500 0.00 0.00 0.00 3.58
2002 2100 4.751767 AATCTTGCCCAAAACTTGTGAA 57.248 36.364 0.00 0.00 0.00 3.18
2003 2101 4.751767 ATCTTGCCCAAAACTTGTGAAA 57.248 36.364 0.00 0.00 0.00 2.69
2004 2102 4.751767 TCTTGCCCAAAACTTGTGAAAT 57.248 36.364 0.00 0.00 0.00 2.17
2005 2103 5.096443 TCTTGCCCAAAACTTGTGAAATT 57.904 34.783 0.00 0.00 0.00 1.82
2006 2104 5.495640 TCTTGCCCAAAACTTGTGAAATTT 58.504 33.333 0.00 0.00 0.00 1.82
2007 2105 5.942826 TCTTGCCCAAAACTTGTGAAATTTT 59.057 32.000 0.00 0.00 0.00 1.82
2008 2106 5.809719 TGCCCAAAACTTGTGAAATTTTC 57.190 34.783 2.05 2.05 0.00 2.29
2009 2107 4.637977 TGCCCAAAACTTGTGAAATTTTCC 59.362 37.500 6.68 0.00 0.00 3.13
2010 2108 4.036262 GCCCAAAACTTGTGAAATTTTCCC 59.964 41.667 6.68 0.00 0.00 3.97
2011 2109 5.436175 CCCAAAACTTGTGAAATTTTCCCT 58.564 37.500 6.68 0.00 0.00 4.20
2012 2110 5.527214 CCCAAAACTTGTGAAATTTTCCCTC 59.473 40.000 6.68 0.00 0.00 4.30
2013 2111 5.527214 CCAAAACTTGTGAAATTTTCCCTCC 59.473 40.000 6.68 0.00 0.00 4.30
2014 2112 5.948742 AAACTTGTGAAATTTTCCCTCCA 57.051 34.783 6.68 0.00 0.00 3.86
2015 2113 6.499106 AAACTTGTGAAATTTTCCCTCCAT 57.501 33.333 6.68 0.00 0.00 3.41
2016 2114 5.473066 ACTTGTGAAATTTTCCCTCCATG 57.527 39.130 6.68 0.00 0.00 3.66
2017 2115 4.901250 ACTTGTGAAATTTTCCCTCCATGT 59.099 37.500 6.68 4.54 0.00 3.21
2018 2116 4.870123 TGTGAAATTTTCCCTCCATGTG 57.130 40.909 6.68 0.00 0.00 3.21
2019 2117 3.006752 TGTGAAATTTTCCCTCCATGTGC 59.993 43.478 6.68 0.00 0.00 4.57
2020 2118 3.006752 GTGAAATTTTCCCTCCATGTGCA 59.993 43.478 6.68 0.00 0.00 4.57
2021 2119 3.006752 TGAAATTTTCCCTCCATGTGCAC 59.993 43.478 10.75 10.75 0.00 4.57
2022 2120 2.610438 ATTTTCCCTCCATGTGCACT 57.390 45.000 19.41 0.15 0.00 4.40
2023 2121 1.909700 TTTTCCCTCCATGTGCACTC 58.090 50.000 19.41 0.00 0.00 3.51
2024 2122 1.067295 TTTCCCTCCATGTGCACTCT 58.933 50.000 19.41 2.18 0.00 3.24
2025 2123 1.067295 TTCCCTCCATGTGCACTCTT 58.933 50.000 19.41 0.00 0.00 2.85
2026 2124 1.067295 TCCCTCCATGTGCACTCTTT 58.933 50.000 19.41 0.00 0.00 2.52
2027 2125 2.265367 TCCCTCCATGTGCACTCTTTA 58.735 47.619 19.41 0.00 0.00 1.85
2028 2126 2.642311 TCCCTCCATGTGCACTCTTTAA 59.358 45.455 19.41 0.00 0.00 1.52
2029 2127 3.266772 TCCCTCCATGTGCACTCTTTAAT 59.733 43.478 19.41 0.00 0.00 1.40
2030 2128 4.019174 CCCTCCATGTGCACTCTTTAATT 58.981 43.478 19.41 0.00 0.00 1.40
2031 2129 4.463891 CCCTCCATGTGCACTCTTTAATTT 59.536 41.667 19.41 0.00 0.00 1.82
2032 2130 5.393461 CCCTCCATGTGCACTCTTTAATTTC 60.393 44.000 19.41 0.00 0.00 2.17
2033 2131 5.393461 CCTCCATGTGCACTCTTTAATTTCC 60.393 44.000 19.41 0.00 0.00 3.13
2034 2132 4.155826 TCCATGTGCACTCTTTAATTTCCG 59.844 41.667 19.41 0.00 0.00 4.30
2035 2133 4.082787 CCATGTGCACTCTTTAATTTCCGT 60.083 41.667 19.41 0.00 0.00 4.69
2036 2134 4.481930 TGTGCACTCTTTAATTTCCGTG 57.518 40.909 19.41 0.00 0.00 4.94
2037 2135 3.234386 GTGCACTCTTTAATTTCCGTGC 58.766 45.455 10.32 0.00 45.66 5.34
2038 2136 3.058224 GTGCACTCTTTAATTTCCGTGCT 60.058 43.478 10.32 0.00 45.66 4.40
2039 2137 4.153475 GTGCACTCTTTAATTTCCGTGCTA 59.847 41.667 10.32 0.00 45.66 3.49
2040 2138 4.757657 TGCACTCTTTAATTTCCGTGCTAA 59.242 37.500 12.54 0.00 45.66 3.09
2041 2139 5.239744 TGCACTCTTTAATTTCCGTGCTAAA 59.760 36.000 12.54 0.00 45.66 1.85
2042 2140 6.146898 GCACTCTTTAATTTCCGTGCTAAAA 58.853 36.000 0.00 0.00 43.06 1.52
2043 2141 6.639279 GCACTCTTTAATTTCCGTGCTAAAAA 59.361 34.615 0.00 0.00 43.06 1.94
2044 2142 7.358105 GCACTCTTTAATTTCCGTGCTAAAAAC 60.358 37.037 0.00 0.00 43.06 2.43
2045 2143 7.860872 CACTCTTTAATTTCCGTGCTAAAAACT 59.139 33.333 0.00 0.00 0.00 2.66
2046 2144 9.059260 ACTCTTTAATTTCCGTGCTAAAAACTA 57.941 29.630 0.00 0.00 0.00 2.24
2052 2150 6.484818 TTTCCGTGCTAAAAACTATACACC 57.515 37.500 0.00 0.00 0.00 4.16
2053 2151 4.506758 TCCGTGCTAAAAACTATACACCC 58.493 43.478 0.00 0.00 0.00 4.61
2054 2152 4.223477 TCCGTGCTAAAAACTATACACCCT 59.777 41.667 0.00 0.00 0.00 4.34
2055 2153 5.421693 TCCGTGCTAAAAACTATACACCCTA 59.578 40.000 0.00 0.00 0.00 3.53
2056 2154 6.098695 TCCGTGCTAAAAACTATACACCCTAT 59.901 38.462 0.00 0.00 0.00 2.57
2057 2155 7.287466 TCCGTGCTAAAAACTATACACCCTATA 59.713 37.037 0.00 0.00 0.00 1.31
2058 2156 8.092687 CCGTGCTAAAAACTATACACCCTATAT 58.907 37.037 0.00 0.00 0.00 0.86
2059 2157 9.485206 CGTGCTAAAAACTATACACCCTATATT 57.515 33.333 0.00 0.00 0.00 1.28
2081 2179 6.952605 TTTAGGAATGGAGGGAGTATATGG 57.047 41.667 0.00 0.00 0.00 2.74
2082 2180 3.808189 AGGAATGGAGGGAGTATATGGG 58.192 50.000 0.00 0.00 0.00 4.00
2083 2181 3.146833 AGGAATGGAGGGAGTATATGGGT 59.853 47.826 0.00 0.00 0.00 4.51
2084 2182 3.264450 GGAATGGAGGGAGTATATGGGTG 59.736 52.174 0.00 0.00 0.00 4.61
2085 2183 3.655972 ATGGAGGGAGTATATGGGTGT 57.344 47.619 0.00 0.00 0.00 4.16
2086 2184 2.689658 TGGAGGGAGTATATGGGTGTG 58.310 52.381 0.00 0.00 0.00 3.82
2087 2185 2.022428 TGGAGGGAGTATATGGGTGTGT 60.022 50.000 0.00 0.00 0.00 3.72
2088 2186 2.633481 GGAGGGAGTATATGGGTGTGTC 59.367 54.545 0.00 0.00 0.00 3.67
2089 2187 3.577919 GAGGGAGTATATGGGTGTGTCT 58.422 50.000 0.00 0.00 0.00 3.41
2090 2188 4.448787 GGAGGGAGTATATGGGTGTGTCTA 60.449 50.000 0.00 0.00 0.00 2.59
2091 2189 4.742012 AGGGAGTATATGGGTGTGTCTAG 58.258 47.826 0.00 0.00 0.00 2.43
2092 2190 3.833070 GGGAGTATATGGGTGTGTCTAGG 59.167 52.174 0.00 0.00 0.00 3.02
2093 2191 3.833070 GGAGTATATGGGTGTGTCTAGGG 59.167 52.174 0.00 0.00 0.00 3.53
2094 2192 3.240302 AGTATATGGGTGTGTCTAGGGC 58.760 50.000 0.00 0.00 0.00 5.19
2095 2193 2.190398 ATATGGGTGTGTCTAGGGCA 57.810 50.000 0.00 0.00 0.00 5.36
2096 2194 1.200519 TATGGGTGTGTCTAGGGCAC 58.799 55.000 10.20 10.20 37.37 5.01
2097 2195 0.840288 ATGGGTGTGTCTAGGGCACA 60.840 55.000 14.22 14.22 43.60 4.57
2098 2196 0.840288 TGGGTGTGTCTAGGGCACAT 60.840 55.000 18.92 0.00 46.66 3.21
2099 2197 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
2100 2198 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
2101 2199 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
2102 2200 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
2103 2201 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
2104 2202 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
2105 2203 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
2130 2228 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
2131 2229 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
2132 2230 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
2133 2231 7.168972 GCTCTAGTTATTGCACATCTAAGTGAG 59.831 40.741 0.00 0.00 42.05 3.51
2134 2232 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
2135 2233 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
2136 2234 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
2137 2235 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
2138 2236 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
2139 2237 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
2140 2238 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
2141 2239 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
2142 2240 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
2143 2241 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
2144 2242 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
2145 2243 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
2146 2244 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
2147 2245 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
2148 2246 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
2149 2247 8.846943 TCTAAGTGAGTGAATCAAGCATAAAA 57.153 30.769 0.00 0.00 40.43 1.52
2150 2248 8.939929 TCTAAGTGAGTGAATCAAGCATAAAAG 58.060 33.333 0.00 0.00 40.43 2.27
2151 2249 7.750229 AAGTGAGTGAATCAAGCATAAAAGA 57.250 32.000 0.00 0.00 40.43 2.52
2152 2250 7.750229 AGTGAGTGAATCAAGCATAAAAGAA 57.250 32.000 0.00 0.00 40.43 2.52
2153 2251 8.169977 AGTGAGTGAATCAAGCATAAAAGAAA 57.830 30.769 0.00 0.00 40.43 2.52
2154 2252 8.632679 AGTGAGTGAATCAAGCATAAAAGAAAA 58.367 29.630 0.00 0.00 40.43 2.29
2155 2253 9.248291 GTGAGTGAATCAAGCATAAAAGAAAAA 57.752 29.630 0.00 0.00 40.43 1.94
2156 2254 9.467258 TGAGTGAATCAAGCATAAAAGAAAAAG 57.533 29.630 0.00 0.00 34.02 2.27
2157 2255 9.683069 GAGTGAATCAAGCATAAAAGAAAAAGA 57.317 29.630 0.00 0.00 0.00 2.52
2158 2256 9.688592 AGTGAATCAAGCATAAAAGAAAAAGAG 57.311 29.630 0.00 0.00 0.00 2.85
2159 2257 9.683069 GTGAATCAAGCATAAAAGAAAAAGAGA 57.317 29.630 0.00 0.00 0.00 3.10
2217 2315 9.538508 TGTAAGATCAATGACATGACTTAGATG 57.461 33.333 0.00 0.00 30.66 2.90
2218 2316 9.539825 GTAAGATCAATGACATGACTTAGATGT 57.460 33.333 0.00 0.00 36.73 3.06
2219 2317 8.434733 AAGATCAATGACATGACTTAGATGTG 57.565 34.615 0.00 0.00 34.10 3.21
2220 2318 6.482641 AGATCAATGACATGACTTAGATGTGC 59.517 38.462 0.00 0.00 34.10 4.57
2221 2319 5.490159 TCAATGACATGACTTAGATGTGCA 58.510 37.500 0.00 0.00 34.10 4.57
2222 2320 5.939296 TCAATGACATGACTTAGATGTGCAA 59.061 36.000 0.00 0.00 34.10 4.08
2223 2321 6.600427 TCAATGACATGACTTAGATGTGCAAT 59.400 34.615 0.00 0.00 34.10 3.56
2224 2322 7.769970 TCAATGACATGACTTAGATGTGCAATA 59.230 33.333 0.00 0.00 34.10 1.90
2225 2323 6.908870 TGACATGACTTAGATGTGCAATAC 57.091 37.500 0.00 0.00 34.10 1.89
2226 2324 6.643388 TGACATGACTTAGATGTGCAATACT 58.357 36.000 0.00 0.00 34.10 2.12
2227 2325 7.105588 TGACATGACTTAGATGTGCAATACTT 58.894 34.615 0.00 0.00 34.10 2.24
2228 2326 8.257306 TGACATGACTTAGATGTGCAATACTTA 58.743 33.333 0.00 0.00 34.10 2.24
2229 2327 9.265901 GACATGACTTAGATGTGCAATACTTAT 57.734 33.333 0.00 0.00 34.10 1.73
2230 2328 9.049523 ACATGACTTAGATGTGCAATACTTATG 57.950 33.333 0.00 0.00 32.68 1.90
2231 2329 8.501580 CATGACTTAGATGTGCAATACTTATGG 58.498 37.037 0.00 0.00 0.00 2.74
2232 2330 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
2233 2331 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
2312 2410 4.735369 TGGAATGTTGATTACAGGTTGGT 58.265 39.130 0.00 0.00 40.83 3.67
2346 2524 7.967303 TGCAATTTTCTTGGTTTCAAATTTGAC 59.033 29.630 20.35 10.59 36.83 3.18
2364 2542 2.288763 TGACGTGAAGCTGTATGCAAGA 60.289 45.455 0.00 0.00 45.94 3.02
2405 2583 5.878332 TTGTGACACACATATTGATGGTC 57.122 39.130 8.05 0.00 44.16 4.02
2414 2592 5.824624 ACACATATTGATGGTCTTCATGGAC 59.175 40.000 0.00 0.00 37.39 4.02
2496 2674 4.753610 GCATGATGCTTTAGTATCTGCAGA 59.246 41.667 20.79 20.79 40.96 4.26
2625 2803 9.185192 GTGTCTAAAAGTACGTGTTAATACAGT 57.815 33.333 0.00 4.53 34.24 3.55
2661 2839 6.764308 TGCTTTCTGATCTTTAGGATTTGG 57.236 37.500 0.00 0.00 34.33 3.28
2722 2901 3.193691 TCTGCTTGCACTCTACCTAGTTC 59.806 47.826 0.00 0.00 0.00 3.01
2956 3161 8.974060 TTACATAATTTGTACTTCCTCCATCC 57.026 34.615 0.00 0.00 40.53 3.51
2957 3162 6.055588 ACATAATTTGTACTTCCTCCATCCG 58.944 40.000 0.00 0.00 36.57 4.18
2958 3163 4.837093 AATTTGTACTTCCTCCATCCGA 57.163 40.909 0.00 0.00 0.00 4.55
2959 3164 4.837093 ATTTGTACTTCCTCCATCCGAA 57.163 40.909 0.00 0.00 0.00 4.30
2960 3165 4.627284 TTTGTACTTCCTCCATCCGAAA 57.373 40.909 0.00 0.00 0.00 3.46
2961 3166 4.627284 TTGTACTTCCTCCATCCGAAAA 57.373 40.909 0.00 0.00 0.00 2.29
2962 3167 4.837093 TGTACTTCCTCCATCCGAAAAT 57.163 40.909 0.00 0.00 0.00 1.82
2963 3168 5.943349 TGTACTTCCTCCATCCGAAAATA 57.057 39.130 0.00 0.00 0.00 1.40
2964 3169 5.667466 TGTACTTCCTCCATCCGAAAATAC 58.333 41.667 0.00 0.00 0.00 1.89
2965 3170 5.424252 TGTACTTCCTCCATCCGAAAATACT 59.576 40.000 0.00 0.00 0.00 2.12
2966 3171 5.437191 ACTTCCTCCATCCGAAAATACTT 57.563 39.130 0.00 0.00 0.00 2.24
2967 3172 5.186198 ACTTCCTCCATCCGAAAATACTTG 58.814 41.667 0.00 0.00 0.00 3.16
2968 3173 4.837093 TCCTCCATCCGAAAATACTTGT 57.163 40.909 0.00 0.00 0.00 3.16
2969 3174 4.766375 TCCTCCATCCGAAAATACTTGTC 58.234 43.478 0.00 0.00 0.00 3.18
2970 3175 4.224147 TCCTCCATCCGAAAATACTTGTCA 59.776 41.667 0.00 0.00 0.00 3.58
2971 3176 5.104527 TCCTCCATCCGAAAATACTTGTCAT 60.105 40.000 0.00 0.00 0.00 3.06
2972 3177 5.237344 CCTCCATCCGAAAATACTTGTCATC 59.763 44.000 0.00 0.00 0.00 2.92
2973 3178 5.739959 TCCATCCGAAAATACTTGTCATCA 58.260 37.500 0.00 0.00 0.00 3.07
2974 3179 6.176896 TCCATCCGAAAATACTTGTCATCAA 58.823 36.000 0.00 0.00 0.00 2.57
2975 3180 6.657117 TCCATCCGAAAATACTTGTCATCAAA 59.343 34.615 0.00 0.00 32.87 2.69
2976 3181 7.175816 TCCATCCGAAAATACTTGTCATCAAAA 59.824 33.333 0.00 0.00 32.87 2.44
2977 3182 7.975616 CCATCCGAAAATACTTGTCATCAAAAT 59.024 33.333 0.00 0.00 32.87 1.82
2978 3183 8.800972 CATCCGAAAATACTTGTCATCAAAATG 58.199 33.333 0.00 0.00 32.87 2.32
2979 3184 8.105097 TCCGAAAATACTTGTCATCAAAATGA 57.895 30.769 0.00 0.00 39.63 2.57
2980 3185 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
2981 3186 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
2989 3194 9.918630 ACTTGTCATCAAAATGAATAAAAGAGG 57.081 29.630 0.00 0.00 43.42 3.69
3035 3240 9.661954 AGTTCTAGATACATCCTTTTCTATCCA 57.338 33.333 0.00 0.00 0.00 3.41
3044 3249 8.827832 ACATCCTTTTCTATCCATTTTGATGA 57.172 30.769 0.00 0.00 32.39 2.92
3045 3250 8.689972 ACATCCTTTTCTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 32.39 3.06
3046 3251 8.689061 CATCCTTTTCTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 0.00 3.58
3047 3252 8.648698 TCCTTTTCTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
3048 3253 8.742777 TCCTTTTCTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
3049 3254 8.526147 CCTTTTCTATCCATTTTGATGACAAGT 58.474 33.333 0.00 0.00 37.32 3.16
3056 3261 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
3057 3262 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3058 3263 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3059 3264 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3060 3265 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3061 3266 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3062 3267 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3063 3268 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3064 3269 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3065 3270 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3066 3271 0.828677 AGTATTTTCGGACGGAGGGG 59.171 55.000 0.00 0.00 0.00 4.79
3067 3272 0.179065 GTATTTTCGGACGGAGGGGG 60.179 60.000 0.00 0.00 0.00 5.40
3068 3273 0.618393 TATTTTCGGACGGAGGGGGT 60.618 55.000 0.00 0.00 0.00 4.95
3069 3274 0.618393 ATTTTCGGACGGAGGGGGTA 60.618 55.000 0.00 0.00 0.00 3.69
3111 3316 9.747898 AGGACCATTGTTAATATGTTAGTTCAA 57.252 29.630 0.00 0.00 0.00 2.69
3500 3874 5.575157 TGGTTTATTTTAGCAGGACCATGA 58.425 37.500 0.00 0.00 31.26 3.07
3653 4028 5.183140 TGTCAAAATCCTAAAACCTGCTAGC 59.817 40.000 8.10 8.10 0.00 3.42
3660 4078 3.445096 CCTAAAACCTGCTAGCATTGCTT 59.555 43.478 19.72 12.00 40.44 3.91
3695 4113 7.121759 CCATTTTCTGTCCATACTTGTCTCATT 59.878 37.037 0.00 0.00 0.00 2.57
3726 4144 0.394938 TGTAAAGTTCAGCTCCCGCA 59.605 50.000 0.00 0.00 39.10 5.69
3831 4249 2.111756 GCACAACGACAAAAGAAGCTG 58.888 47.619 0.00 0.00 0.00 4.24
3837 4255 2.614057 ACGACAAAAGAAGCTGTCCTTG 59.386 45.455 0.00 0.00 39.02 3.61
3953 4371 8.792830 TTCTGGTCAAATCTTATTGTAAGGAG 57.207 34.615 0.00 0.00 0.00 3.69
3954 4372 6.823689 TCTGGTCAAATCTTATTGTAAGGAGC 59.176 38.462 0.00 0.00 0.00 4.70
3963 4381 7.283625 TCTTATTGTAAGGAGCTCTCAGATC 57.716 40.000 14.64 0.00 0.00 2.75
3984 4402 4.326826 TCCTGTTGATGAACCAAGCTTAG 58.673 43.478 0.00 0.00 0.00 2.18
3989 4407 5.008613 TGTTGATGAACCAAGCTTAGTCAAC 59.991 40.000 15.56 15.56 42.55 3.18
3990 4408 4.072131 TGATGAACCAAGCTTAGTCAACC 58.928 43.478 0.00 1.19 0.00 3.77
4072 4490 2.160417 GGCTTGAAGAGAATTGTGACCG 59.840 50.000 0.00 0.00 0.00 4.79
4142 4562 8.087750 CAGATTGGTTTGGTCTTTTATAGCAAA 58.912 33.333 0.00 0.00 40.81 3.68
4364 4787 0.599204 TCGGAGCGAGTTTCACCAAC 60.599 55.000 0.00 0.00 35.32 3.77
4419 4842 8.281212 AGTTTTTGCTTCTAAAAGACTCTTGA 57.719 30.769 0.00 0.00 34.14 3.02
4421 4844 7.865706 TTTTGCTTCTAAAAGACTCTTGACT 57.134 32.000 0.00 0.00 34.14 3.41
4422 4845 6.851222 TTGCTTCTAAAAGACTCTTGACTG 57.149 37.500 0.00 0.00 34.14 3.51
4555 4978 2.595463 GTGAGCAACAGCCAGGCA 60.595 61.111 15.80 0.00 0.00 4.75
4570 4993 2.667418 GCAGCTGCTGGAGGAGAA 59.333 61.111 31.33 0.00 35.31 2.87
4898 5336 1.008194 TCGTGTTTGGTCCGACTCG 60.008 57.895 11.34 11.34 34.99 4.18
4902 5340 0.748450 TGTTTGGTCCGACTCGTCTT 59.252 50.000 0.00 0.00 0.00 3.01
4911 5349 0.431233 CGACTCGTCTTGTTTCTGCG 59.569 55.000 0.00 0.00 0.00 5.18
4928 5905 1.493311 CGAACTTGTCCTCGCTTGC 59.507 57.895 0.00 0.00 0.00 4.01
4998 5978 6.256757 GCTTGTTTTAGATGTTCGAGAGCTAT 59.743 38.462 0.00 0.00 0.00 2.97
5014 5994 7.763985 TCGAGAGCTATATCAGTGATTCTCTAG 59.236 40.741 21.27 19.38 30.69 2.43
5026 6008 7.615757 TCAGTGATTCTCTAGGTATTGAACTGA 59.384 37.037 0.00 0.00 0.00 3.41
5143 6132 4.714802 TCCCTCTTGCTACTTAACATGCTA 59.285 41.667 0.00 0.00 0.00 3.49
5154 6143 7.041780 GCTACTTAACATGCTATGCAAGTGTAT 60.042 37.037 17.37 0.00 39.58 2.29
5461 6457 2.228059 CACTCCATTCTGATGCCATCC 58.772 52.381 1.49 0.00 31.67 3.51
5510 6507 5.777850 TTATTATACTGAGTAGCGGTGCA 57.222 39.130 5.29 0.00 36.57 4.57
5524 6521 2.699954 CGGTGCAACAAAGTCTAGGAT 58.300 47.619 0.98 0.00 39.98 3.24
5665 6662 6.442112 GGCATATAAATTCTGTTCTGCCTTC 58.558 40.000 3.10 0.00 43.52 3.46
5762 6759 4.655963 TCATCAAGTGGAAGGGAGAAAAG 58.344 43.478 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.143122 TCTGTTCTGTAAAGCAAGCCG 58.857 47.619 0.00 0.00 0.00 5.52
159 160 0.606604 GTGAAGAAGGCCGGACACTA 59.393 55.000 11.69 0.00 0.00 2.74
165 166 0.804989 GTGAATGTGAAGAAGGCCGG 59.195 55.000 0.00 0.00 0.00 6.13
182 183 0.327924 TCCAGTGGCCCTTGTATGTG 59.672 55.000 3.51 0.00 0.00 3.21
204 205 0.608130 CCACTCCGTGAACTCATCCA 59.392 55.000 0.00 0.00 35.23 3.41
240 241 2.354704 CGGTCAGCTCTATTGAAACCCA 60.355 50.000 0.00 0.00 0.00 4.51
342 344 0.384353 GAACGCGGTCTTTTGCTCAC 60.384 55.000 18.88 0.00 0.00 3.51
355 357 2.165301 GGATGGAAGGTCGAACGCG 61.165 63.158 3.53 3.53 39.35 6.01
372 374 2.486982 GCGATTTCATCCAGGATCATGG 59.513 50.000 20.49 20.49 42.11 3.66
468 471 1.803334 ACAACATACGCGACACCAAT 58.197 45.000 15.93 0.00 0.00 3.16
537 543 8.958060 AGGTGTATCATAGCTTTATAGAAGGA 57.042 34.615 0.00 0.00 0.00 3.36
555 561 3.704566 TCGAGAGTATGCCAAAGGTGTAT 59.295 43.478 0.00 0.00 0.00 2.29
595 601 9.619316 CGAATGGACATTTTGTTTATTAAGACA 57.381 29.630 0.00 0.00 0.00 3.41
656 662 2.297701 GACCAAAAGCCACAGTTCTGA 58.702 47.619 6.83 0.00 0.00 3.27
657 663 1.338020 GGACCAAAAGCCACAGTTCTG 59.662 52.381 0.00 0.00 0.00 3.02
658 664 1.064017 TGGACCAAAAGCCACAGTTCT 60.064 47.619 0.00 0.00 0.00 3.01
659 665 1.398692 TGGACCAAAAGCCACAGTTC 58.601 50.000 0.00 0.00 0.00 3.01
743 772 3.355378 TGATGGTCTATGTTTGCTTGGG 58.645 45.455 0.00 0.00 0.00 4.12
764 793 0.553612 AAAGAAGCTGGGGAGGGGAT 60.554 55.000 0.00 0.00 0.00 3.85
765 794 1.151587 AAAGAAGCTGGGGAGGGGA 60.152 57.895 0.00 0.00 0.00 4.81
769 800 2.304180 TCAAGAGAAAGAAGCTGGGGAG 59.696 50.000 0.00 0.00 0.00 4.30
834 868 1.406614 GGGAGCCTGTTGTGAGATGAG 60.407 57.143 0.00 0.00 0.00 2.90
862 914 2.122564 GCCACTACTTATAACGGCGTC 58.877 52.381 15.17 0.00 0.00 5.19
869 921 5.724854 ACTGGAAGGAAGCCACTACTTATAA 59.275 40.000 0.00 0.00 39.30 0.98
881 933 1.683319 GGGATGGAACTGGAAGGAAGC 60.683 57.143 0.00 0.00 39.30 3.86
883 935 1.916181 GAGGGATGGAACTGGAAGGAA 59.084 52.381 0.00 0.00 39.30 3.36
904 956 3.253838 TGGGTTTGGAGGGACGGG 61.254 66.667 0.00 0.00 0.00 5.28
908 960 3.961414 GGCGTGGGTTTGGAGGGA 61.961 66.667 0.00 0.00 0.00 4.20
912 964 4.939368 CGGTGGCGTGGGTTTGGA 62.939 66.667 0.00 0.00 0.00 3.53
968 1024 2.341101 TTCGGCTCGAGGACCAGAC 61.341 63.158 15.58 0.00 37.14 3.51
971 1027 3.379445 GGTTCGGCTCGAGGACCA 61.379 66.667 15.58 0.00 36.93 4.02
986 1042 2.765807 CCATGGGAGGAGAGCGGT 60.766 66.667 2.85 0.00 0.00 5.68
989 1045 4.247380 CCGCCATGGGAGGAGAGC 62.247 72.222 15.13 0.00 45.77 4.09
990 1046 2.444706 TCCGCCATGGGAGGAGAG 60.445 66.667 15.13 0.00 46.40 3.20
1008 1064 4.493747 GAAGGAGCGTCGACCGGG 62.494 72.222 10.58 0.00 36.94 5.73
1009 1065 4.493747 GGAAGGAGCGTCGACCGG 62.494 72.222 10.58 0.00 36.94 5.28
1010 1066 3.277211 TTGGAAGGAGCGTCGACCG 62.277 63.158 10.58 6.51 40.40 4.79
1011 1067 1.446272 CTTGGAAGGAGCGTCGACC 60.446 63.158 10.58 2.76 0.00 4.79
1012 1068 2.095252 GCTTGGAAGGAGCGTCGAC 61.095 63.158 5.18 5.18 0.00 4.20
1013 1069 2.261671 GCTTGGAAGGAGCGTCGA 59.738 61.111 0.00 0.00 0.00 4.20
1014 1070 2.815647 GGCTTGGAAGGAGCGTCG 60.816 66.667 0.00 0.00 41.03 5.12
1015 1071 2.815647 CGGCTTGGAAGGAGCGTC 60.816 66.667 0.00 0.00 41.03 5.19
1016 1072 3.311110 TCGGCTTGGAAGGAGCGT 61.311 61.111 0.00 0.00 41.03 5.07
1017 1073 2.815647 GTCGGCTTGGAAGGAGCG 60.816 66.667 0.00 0.00 41.03 5.03
1018 1074 2.436824 GGTCGGCTTGGAAGGAGC 60.437 66.667 0.00 0.00 39.41 4.70
1019 1075 2.269241 GGGTCGGCTTGGAAGGAG 59.731 66.667 0.00 0.00 0.00 3.69
1020 1076 3.327404 GGGGTCGGCTTGGAAGGA 61.327 66.667 0.00 0.00 0.00 3.36
1021 1077 4.778143 CGGGGTCGGCTTGGAAGG 62.778 72.222 0.00 0.00 0.00 3.46
1319 1382 4.047627 ACCAGAAATTAGTCAAAGGGGG 57.952 45.455 0.00 0.00 0.00 5.40
1324 1387 5.009610 GGACAGCAACCAGAAATTAGTCAAA 59.990 40.000 0.00 0.00 0.00 2.69
1327 1390 4.327680 AGGACAGCAACCAGAAATTAGTC 58.672 43.478 0.00 0.00 0.00 2.59
1371 1434 0.523072 CCGTGGTGAAATCCTTGCAG 59.477 55.000 0.00 0.00 0.00 4.41
1373 1436 0.521735 GTCCGTGGTGAAATCCTTGC 59.478 55.000 0.00 0.00 0.00 4.01
1398 1461 1.405121 GCGTAAGTGGTGAGGGTAAGG 60.405 57.143 0.00 0.00 41.68 2.69
1439 1509 5.756347 AGCAGAGATCGTTACTACTACTCAG 59.244 44.000 0.00 0.00 0.00 3.35
1440 1510 5.672503 AGCAGAGATCGTTACTACTACTCA 58.327 41.667 0.00 0.00 0.00 3.41
1441 1511 5.107760 CGAGCAGAGATCGTTACTACTACTC 60.108 48.000 0.00 0.00 36.67 2.59
1442 1512 4.746115 CGAGCAGAGATCGTTACTACTACT 59.254 45.833 0.00 0.00 36.67 2.57
1443 1513 4.608890 GCGAGCAGAGATCGTTACTACTAC 60.609 50.000 6.53 0.00 43.63 2.73
1444 1514 3.493877 GCGAGCAGAGATCGTTACTACTA 59.506 47.826 6.53 0.00 43.63 1.82
1445 1515 2.288458 GCGAGCAGAGATCGTTACTACT 59.712 50.000 6.53 0.00 43.63 2.57
1446 1516 2.602694 GGCGAGCAGAGATCGTTACTAC 60.603 54.545 6.53 0.00 43.63 2.73
1447 1517 1.602851 GGCGAGCAGAGATCGTTACTA 59.397 52.381 6.53 0.00 43.63 1.82
1448 1518 0.382515 GGCGAGCAGAGATCGTTACT 59.617 55.000 6.53 0.00 43.63 2.24
1467 1537 1.189446 CGTGACAGGAAACGACGAAAG 59.811 52.381 0.00 0.00 42.32 2.62
1474 1544 1.415374 ACGAATCGTGACAGGAAACG 58.585 50.000 7.77 18.51 39.18 3.60
1486 1556 1.593006 GCCACATACAGGAACGAATCG 59.407 52.381 0.00 0.00 0.00 3.34
1529 1622 1.834263 ACCCCAGCAGTCATCTAGAAC 59.166 52.381 0.00 0.00 0.00 3.01
1539 1632 0.744281 CAAACGAAAACCCCAGCAGT 59.256 50.000 0.00 0.00 0.00 4.40
1577 1670 2.350895 CCCCGAATCCTGTGCACA 59.649 61.111 20.37 20.37 0.00 4.57
1583 1676 0.676782 AAACGAAGCCCCGAATCCTG 60.677 55.000 2.21 0.00 0.00 3.86
1592 1690 2.284150 GCAGAAAACAAAAACGAAGCCC 59.716 45.455 0.00 0.00 0.00 5.19
1620 1718 3.824133 CACTTCATCCCCAATCTGCATA 58.176 45.455 0.00 0.00 0.00 3.14
1768 1866 4.312443 GGACTACCAACGATTTGAACTGA 58.688 43.478 0.00 0.00 34.24 3.41
1816 1914 4.021016 CCTTATATCAAGGAACGGAGGGAG 60.021 50.000 0.00 0.00 39.81 4.30
1817 1915 3.901844 CCTTATATCAAGGAACGGAGGGA 59.098 47.826 0.00 0.00 39.81 4.20
1818 1916 3.646637 ACCTTATATCAAGGAACGGAGGG 59.353 47.826 9.96 0.00 39.81 4.30
1819 1917 4.101119 ACACCTTATATCAAGGAACGGAGG 59.899 45.833 9.96 0.00 39.81 4.30
1820 1918 5.277857 ACACCTTATATCAAGGAACGGAG 57.722 43.478 9.96 0.00 39.81 4.63
1821 1919 6.989155 ATACACCTTATATCAAGGAACGGA 57.011 37.500 9.96 0.00 39.81 4.69
1822 1920 8.118976 TCTATACACCTTATATCAAGGAACGG 57.881 38.462 9.96 0.05 39.81 4.44
1859 1957 9.255029 AGGCAATACACCTTATATTTTGAACTT 57.745 29.630 0.00 0.00 31.87 2.66
1860 1958 8.823220 AGGCAATACACCTTATATTTTGAACT 57.177 30.769 0.00 0.00 31.87 3.01
1861 1959 9.301153 CAAGGCAATACACCTTATATTTTGAAC 57.699 33.333 0.00 0.00 45.90 3.18
1862 1960 7.978975 GCAAGGCAATACACCTTATATTTTGAA 59.021 33.333 0.00 0.00 45.90 2.69
1864 1962 7.222611 GTGCAAGGCAATACACCTTATATTTTG 59.777 37.037 0.00 0.00 45.90 2.44
1865 1963 7.264947 GTGCAAGGCAATACACCTTATATTTT 58.735 34.615 0.00 0.00 45.90 1.82
1866 1964 6.183360 GGTGCAAGGCAATACACCTTATATTT 60.183 38.462 10.07 0.00 45.90 1.40
1869 1967 4.204012 GGTGCAAGGCAATACACCTTATA 58.796 43.478 10.07 0.00 45.90 0.98
1875 1973 1.200020 GAGTGGTGCAAGGCAATACAC 59.800 52.381 11.54 11.54 41.47 2.90
1877 1975 1.533625 TGAGTGGTGCAAGGCAATAC 58.466 50.000 0.00 0.00 41.47 1.89
1879 1977 1.636148 AATGAGTGGTGCAAGGCAAT 58.364 45.000 0.00 0.00 41.47 3.56
1883 1981 3.947910 ATTCAAATGAGTGGTGCAAGG 57.052 42.857 0.00 0.00 0.00 3.61
1884 1982 6.017400 AGTTATTCAAATGAGTGGTGCAAG 57.983 37.500 0.00 0.00 0.00 4.01
1885 1983 6.403866 AAGTTATTCAAATGAGTGGTGCAA 57.596 33.333 0.00 0.00 0.00 4.08
1886 1984 6.403866 AAAGTTATTCAAATGAGTGGTGCA 57.596 33.333 0.00 0.00 0.00 4.57
1887 1985 7.713764 AAAAAGTTATTCAAATGAGTGGTGC 57.286 32.000 0.00 0.00 0.00 5.01
1889 1987 9.981114 CCTTAAAAAGTTATTCAAATGAGTGGT 57.019 29.630 0.00 0.00 0.00 4.16
1890 1988 9.423061 CCCTTAAAAAGTTATTCAAATGAGTGG 57.577 33.333 0.00 0.00 0.00 4.00
1911 2009 9.983024 TGTAAGGAAATGTAATCAAATCCCTTA 57.017 29.630 0.00 0.00 34.79 2.69
1931 2029 1.771255 AGGAGCTTGCCCTATGTAAGG 59.229 52.381 0.00 0.00 46.09 2.69
1932 2030 2.703007 AGAGGAGCTTGCCCTATGTAAG 59.297 50.000 0.00 0.00 39.45 2.34
1933 2031 2.764269 AGAGGAGCTTGCCCTATGTAA 58.236 47.619 0.00 0.00 33.36 2.41
1934 2032 2.478872 AGAGGAGCTTGCCCTATGTA 57.521 50.000 0.00 0.00 33.36 2.29
1935 2033 2.478872 TAGAGGAGCTTGCCCTATGT 57.521 50.000 0.00 0.00 33.36 2.29
1936 2034 4.363991 AAATAGAGGAGCTTGCCCTATG 57.636 45.455 0.00 0.00 33.36 2.23
1937 2035 4.662650 AGAAAATAGAGGAGCTTGCCCTAT 59.337 41.667 0.00 0.00 33.36 2.57
1938 2036 4.040755 AGAAAATAGAGGAGCTTGCCCTA 58.959 43.478 0.00 0.00 33.36 3.53
1939 2037 2.849318 AGAAAATAGAGGAGCTTGCCCT 59.151 45.455 0.00 0.00 36.57 5.19
1940 2038 3.210227 GAGAAAATAGAGGAGCTTGCCC 58.790 50.000 0.00 0.00 0.00 5.36
1941 2039 3.878778 TGAGAAAATAGAGGAGCTTGCC 58.121 45.455 0.00 0.00 0.00 4.52
1942 2040 7.742556 AATATGAGAAAATAGAGGAGCTTGC 57.257 36.000 0.00 0.00 0.00 4.01
1963 2061 9.555727 GGCAAGATTACACCTGACTAATTAATA 57.444 33.333 0.00 0.00 0.00 0.98
1964 2062 7.502561 GGGCAAGATTACACCTGACTAATTAAT 59.497 37.037 0.00 0.00 0.00 1.40
1965 2063 6.826741 GGGCAAGATTACACCTGACTAATTAA 59.173 38.462 0.00 0.00 0.00 1.40
1966 2064 6.069905 TGGGCAAGATTACACCTGACTAATTA 60.070 38.462 0.00 0.00 0.00 1.40
1967 2065 5.193679 GGGCAAGATTACACCTGACTAATT 58.806 41.667 0.00 0.00 0.00 1.40
1968 2066 4.227300 TGGGCAAGATTACACCTGACTAAT 59.773 41.667 0.00 0.00 0.00 1.73
1969 2067 3.585289 TGGGCAAGATTACACCTGACTAA 59.415 43.478 0.00 0.00 0.00 2.24
1970 2068 3.178046 TGGGCAAGATTACACCTGACTA 58.822 45.455 0.00 0.00 0.00 2.59
1971 2069 1.985159 TGGGCAAGATTACACCTGACT 59.015 47.619 0.00 0.00 0.00 3.41
1972 2070 2.489938 TGGGCAAGATTACACCTGAC 57.510 50.000 0.00 0.00 0.00 3.51
1973 2071 3.517296 TTTGGGCAAGATTACACCTGA 57.483 42.857 0.00 0.00 0.00 3.86
1974 2072 3.573967 AGTTTTGGGCAAGATTACACCTG 59.426 43.478 0.00 0.00 0.00 4.00
1975 2073 3.844640 AGTTTTGGGCAAGATTACACCT 58.155 40.909 0.00 0.00 0.00 4.00
1976 2074 4.202212 ACAAGTTTTGGGCAAGATTACACC 60.202 41.667 0.00 0.00 34.12 4.16
1977 2075 4.744631 CACAAGTTTTGGGCAAGATTACAC 59.255 41.667 0.00 0.00 34.12 2.90
1978 2076 4.646945 TCACAAGTTTTGGGCAAGATTACA 59.353 37.500 0.00 0.00 32.92 2.41
1979 2077 5.195001 TCACAAGTTTTGGGCAAGATTAC 57.805 39.130 0.00 0.00 32.92 1.89
1980 2078 5.860941 TTCACAAGTTTTGGGCAAGATTA 57.139 34.783 0.00 0.00 32.92 1.75
1981 2079 4.751767 TTCACAAGTTTTGGGCAAGATT 57.248 36.364 0.00 0.00 32.92 2.40
1982 2080 4.751767 TTTCACAAGTTTTGGGCAAGAT 57.248 36.364 0.00 0.00 32.92 2.40
1983 2081 4.751767 ATTTCACAAGTTTTGGGCAAGA 57.248 36.364 0.00 0.00 32.92 3.02
1984 2082 5.816449 AAATTTCACAAGTTTTGGGCAAG 57.184 34.783 0.00 0.00 32.92 4.01
1985 2083 5.124617 GGAAAATTTCACAAGTTTTGGGCAA 59.875 36.000 8.09 0.00 30.39 4.52
1986 2084 4.637977 GGAAAATTTCACAAGTTTTGGGCA 59.362 37.500 8.09 0.00 30.39 5.36
1987 2085 4.036262 GGGAAAATTTCACAAGTTTTGGGC 59.964 41.667 8.09 0.00 30.39 5.36
1988 2086 5.436175 AGGGAAAATTTCACAAGTTTTGGG 58.564 37.500 10.88 0.00 34.83 4.12
1989 2087 5.527214 GGAGGGAAAATTTCACAAGTTTTGG 59.473 40.000 10.88 0.00 34.83 3.28
1990 2088 6.112058 TGGAGGGAAAATTTCACAAGTTTTG 58.888 36.000 10.88 0.00 34.83 2.44
1991 2089 6.306643 TGGAGGGAAAATTTCACAAGTTTT 57.693 33.333 10.88 0.00 34.83 2.43
1992 2090 5.948742 TGGAGGGAAAATTTCACAAGTTT 57.051 34.783 10.88 0.00 34.83 2.66
1993 2091 5.366477 ACATGGAGGGAAAATTTCACAAGTT 59.634 36.000 10.88 0.00 34.83 2.66
1994 2092 4.901250 ACATGGAGGGAAAATTTCACAAGT 59.099 37.500 10.88 3.07 34.83 3.16
1995 2093 5.232463 CACATGGAGGGAAAATTTCACAAG 58.768 41.667 10.88 2.52 34.83 3.16
1996 2094 4.502950 GCACATGGAGGGAAAATTTCACAA 60.503 41.667 10.88 0.00 34.83 3.33
1997 2095 3.006752 GCACATGGAGGGAAAATTTCACA 59.993 43.478 10.88 2.87 34.83 3.58
1998 2096 3.006752 TGCACATGGAGGGAAAATTTCAC 59.993 43.478 8.09 3.68 0.00 3.18
1999 2097 3.006752 GTGCACATGGAGGGAAAATTTCA 59.993 43.478 13.17 0.00 0.00 2.69
2000 2098 3.259123 AGTGCACATGGAGGGAAAATTTC 59.741 43.478 21.04 0.00 0.00 2.17
2001 2099 3.242011 AGTGCACATGGAGGGAAAATTT 58.758 40.909 21.04 0.00 0.00 1.82
2002 2100 2.827921 GAGTGCACATGGAGGGAAAATT 59.172 45.455 21.04 0.00 0.00 1.82
2003 2101 2.042162 AGAGTGCACATGGAGGGAAAAT 59.958 45.455 21.04 0.00 0.00 1.82
2004 2102 1.425066 AGAGTGCACATGGAGGGAAAA 59.575 47.619 21.04 0.00 0.00 2.29
2005 2103 1.067295 AGAGTGCACATGGAGGGAAA 58.933 50.000 21.04 0.00 0.00 3.13
2006 2104 1.067295 AAGAGTGCACATGGAGGGAA 58.933 50.000 21.04 0.00 0.00 3.97
2007 2105 1.067295 AAAGAGTGCACATGGAGGGA 58.933 50.000 21.04 0.00 0.00 4.20
2008 2106 2.787473 TAAAGAGTGCACATGGAGGG 57.213 50.000 21.04 0.00 0.00 4.30
2009 2107 5.393461 GGAAATTAAAGAGTGCACATGGAGG 60.393 44.000 21.04 0.00 0.00 4.30
2010 2108 5.644644 GGAAATTAAAGAGTGCACATGGAG 58.355 41.667 21.04 0.00 0.00 3.86
2011 2109 4.155826 CGGAAATTAAAGAGTGCACATGGA 59.844 41.667 21.04 0.00 0.00 3.41
2012 2110 4.082787 ACGGAAATTAAAGAGTGCACATGG 60.083 41.667 21.04 0.00 0.00 3.66
2013 2111 4.853196 CACGGAAATTAAAGAGTGCACATG 59.147 41.667 21.04 0.00 0.00 3.21
2014 2112 5.046910 CACGGAAATTAAAGAGTGCACAT 57.953 39.130 21.04 3.86 0.00 3.21
2015 2113 4.481930 CACGGAAATTAAAGAGTGCACA 57.518 40.909 21.04 0.00 0.00 4.57
2019 2117 7.860872 AGTTTTTAGCACGGAAATTAAAGAGTG 59.139 33.333 0.00 0.00 0.00 3.51
2020 2118 7.937649 AGTTTTTAGCACGGAAATTAAAGAGT 58.062 30.769 0.00 0.00 0.00 3.24
2026 2124 8.667463 GGTGTATAGTTTTTAGCACGGAAATTA 58.333 33.333 0.00 0.00 0.00 1.40
2027 2125 7.362315 GGGTGTATAGTTTTTAGCACGGAAATT 60.362 37.037 0.00 0.00 0.00 1.82
2028 2126 6.094464 GGGTGTATAGTTTTTAGCACGGAAAT 59.906 38.462 0.00 0.00 0.00 2.17
2029 2127 5.412286 GGGTGTATAGTTTTTAGCACGGAAA 59.588 40.000 0.00 0.00 0.00 3.13
2030 2128 4.937015 GGGTGTATAGTTTTTAGCACGGAA 59.063 41.667 0.00 0.00 0.00 4.30
2031 2129 4.223477 AGGGTGTATAGTTTTTAGCACGGA 59.777 41.667 0.00 0.00 0.00 4.69
2032 2130 4.510571 AGGGTGTATAGTTTTTAGCACGG 58.489 43.478 0.00 0.00 0.00 4.94
2033 2131 9.485206 AATATAGGGTGTATAGTTTTTAGCACG 57.515 33.333 0.00 0.00 0.00 5.34
2055 2153 9.230477 CCATATACTCCCTCCATTCCTAAATAT 57.770 37.037 0.00 0.00 0.00 1.28
2056 2154 7.627697 CCCATATACTCCCTCCATTCCTAAATA 59.372 40.741 0.00 0.00 0.00 1.40
2057 2155 6.448387 CCCATATACTCCCTCCATTCCTAAAT 59.552 42.308 0.00 0.00 0.00 1.40
2058 2156 5.790618 CCCATATACTCCCTCCATTCCTAAA 59.209 44.000 0.00 0.00 0.00 1.85
2059 2157 5.162648 ACCCATATACTCCCTCCATTCCTAA 60.163 44.000 0.00 0.00 0.00 2.69
2060 2158 4.363217 ACCCATATACTCCCTCCATTCCTA 59.637 45.833 0.00 0.00 0.00 2.94
2061 2159 3.146833 ACCCATATACTCCCTCCATTCCT 59.853 47.826 0.00 0.00 0.00 3.36
2062 2160 3.264450 CACCCATATACTCCCTCCATTCC 59.736 52.174 0.00 0.00 0.00 3.01
2063 2161 3.910627 ACACCCATATACTCCCTCCATTC 59.089 47.826 0.00 0.00 0.00 2.67
2064 2162 3.652869 CACACCCATATACTCCCTCCATT 59.347 47.826 0.00 0.00 0.00 3.16
2065 2163 3.251484 CACACCCATATACTCCCTCCAT 58.749 50.000 0.00 0.00 0.00 3.41
2066 2164 2.022428 ACACACCCATATACTCCCTCCA 60.022 50.000 0.00 0.00 0.00 3.86
2067 2165 2.633481 GACACACCCATATACTCCCTCC 59.367 54.545 0.00 0.00 0.00 4.30
2068 2166 3.577919 AGACACACCCATATACTCCCTC 58.422 50.000 0.00 0.00 0.00 4.30
2069 2167 3.708236 AGACACACCCATATACTCCCT 57.292 47.619 0.00 0.00 0.00 4.20
2070 2168 3.833070 CCTAGACACACCCATATACTCCC 59.167 52.174 0.00 0.00 0.00 4.30
2071 2169 3.833070 CCCTAGACACACCCATATACTCC 59.167 52.174 0.00 0.00 0.00 3.85
2072 2170 3.258622 GCCCTAGACACACCCATATACTC 59.741 52.174 0.00 0.00 0.00 2.59
2073 2171 3.240302 GCCCTAGACACACCCATATACT 58.760 50.000 0.00 0.00 0.00 2.12
2074 2172 2.969950 TGCCCTAGACACACCCATATAC 59.030 50.000 0.00 0.00 0.00 1.47
2075 2173 2.969950 GTGCCCTAGACACACCCATATA 59.030 50.000 10.07 0.00 37.96 0.86
2076 2174 1.768870 GTGCCCTAGACACACCCATAT 59.231 52.381 10.07 0.00 37.96 1.78
2077 2175 1.200519 GTGCCCTAGACACACCCATA 58.799 55.000 10.07 0.00 37.96 2.74
2078 2176 0.840288 TGTGCCCTAGACACACCCAT 60.840 55.000 12.81 0.00 42.88 4.00
2079 2177 1.460497 TGTGCCCTAGACACACCCA 60.460 57.895 12.81 0.00 42.88 4.51
2080 2178 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
2084 2182 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
2106 2204 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
2107 2205 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
2108 2206 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
2109 2207 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
2110 2208 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
2111 2209 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
2112 2210 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
2113 2211 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
2114 2212 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
2115 2213 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
2116 2214 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
2117 2215 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
2118 2216 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
2119 2217 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
2120 2218 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
2121 2219 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
2122 2220 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
2123 2221 9.453572 TTTTATGCTTGATTCACTCACTTAGAT 57.546 29.630 0.00 0.00 32.17 1.98
2124 2222 8.846943 TTTTATGCTTGATTCACTCACTTAGA 57.153 30.769 0.00 0.00 32.17 2.10
2125 2223 8.939929 TCTTTTATGCTTGATTCACTCACTTAG 58.060 33.333 0.00 0.00 32.17 2.18
2126 2224 8.846943 TCTTTTATGCTTGATTCACTCACTTA 57.153 30.769 0.00 0.00 32.17 2.24
2127 2225 7.750229 TCTTTTATGCTTGATTCACTCACTT 57.250 32.000 0.00 0.00 32.17 3.16
2128 2226 7.750229 TTCTTTTATGCTTGATTCACTCACT 57.250 32.000 0.00 0.00 32.17 3.41
2129 2227 8.801715 TTTTCTTTTATGCTTGATTCACTCAC 57.198 30.769 0.00 0.00 32.17 3.51
2130 2228 9.467258 CTTTTTCTTTTATGCTTGATTCACTCA 57.533 29.630 0.00 0.00 0.00 3.41
2131 2229 9.683069 TCTTTTTCTTTTATGCTTGATTCACTC 57.317 29.630 0.00 0.00 0.00 3.51
2132 2230 9.688592 CTCTTTTTCTTTTATGCTTGATTCACT 57.311 29.630 0.00 0.00 0.00 3.41
2133 2231 9.683069 TCTCTTTTTCTTTTATGCTTGATTCAC 57.317 29.630 0.00 0.00 0.00 3.18
2191 2289 9.538508 CATCTAAGTCATGTCATTGATCTTACA 57.461 33.333 0.00 0.00 0.00 2.41
2192 2290 9.539825 ACATCTAAGTCATGTCATTGATCTTAC 57.460 33.333 0.00 0.00 27.49 2.34
2193 2291 9.538508 CACATCTAAGTCATGTCATTGATCTTA 57.461 33.333 0.00 0.00 31.83 2.10
2194 2292 7.012138 GCACATCTAAGTCATGTCATTGATCTT 59.988 37.037 0.00 0.00 31.83 2.40
2195 2293 6.482641 GCACATCTAAGTCATGTCATTGATCT 59.517 38.462 0.00 0.00 31.83 2.75
2196 2294 6.259387 TGCACATCTAAGTCATGTCATTGATC 59.741 38.462 0.00 0.00 31.83 2.92
2197 2295 6.117488 TGCACATCTAAGTCATGTCATTGAT 58.883 36.000 0.00 0.00 31.83 2.57
2198 2296 5.490159 TGCACATCTAAGTCATGTCATTGA 58.510 37.500 0.00 0.00 31.83 2.57
2199 2297 5.806366 TGCACATCTAAGTCATGTCATTG 57.194 39.130 0.00 0.00 31.83 2.82
2200 2298 7.772292 AGTATTGCACATCTAAGTCATGTCATT 59.228 33.333 0.00 0.00 31.83 2.57
2201 2299 7.278135 AGTATTGCACATCTAAGTCATGTCAT 58.722 34.615 0.00 0.00 31.83 3.06
2202 2300 6.643388 AGTATTGCACATCTAAGTCATGTCA 58.357 36.000 0.00 0.00 31.83 3.58
2203 2301 7.545362 AAGTATTGCACATCTAAGTCATGTC 57.455 36.000 0.00 0.00 31.83 3.06
2204 2302 9.049523 CATAAGTATTGCACATCTAAGTCATGT 57.950 33.333 0.00 0.00 34.67 3.21
2205 2303 8.501580 CCATAAGTATTGCACATCTAAGTCATG 58.498 37.037 0.00 0.00 0.00 3.07
2206 2304 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
2207 2305 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
2208 2306 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
2209 2307 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
2210 2308 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
2218 2316 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
2219 2317 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
2245 2343 8.268738 CAGTAATTTCAACAGTTTTGCTAAAGC 58.731 33.333 0.00 0.00 42.50 3.51
2246 2344 9.301153 ACAGTAATTTCAACAGTTTTGCTAAAG 57.699 29.630 0.00 0.00 0.00 1.85
2247 2345 9.081997 CACAGTAATTTCAACAGTTTTGCTAAA 57.918 29.630 0.00 0.00 0.00 1.85
2248 2346 8.247562 ACACAGTAATTTCAACAGTTTTGCTAA 58.752 29.630 0.00 0.00 0.00 3.09
2249 2347 7.767261 ACACAGTAATTTCAACAGTTTTGCTA 58.233 30.769 0.00 0.00 0.00 3.49
2250 2348 6.630071 ACACAGTAATTTCAACAGTTTTGCT 58.370 32.000 0.00 0.00 0.00 3.91
2251 2349 6.885735 ACACAGTAATTTCAACAGTTTTGC 57.114 33.333 0.00 0.00 0.00 3.68
2252 2350 8.459521 TGAACACAGTAATTTCAACAGTTTTG 57.540 30.769 0.00 0.00 0.00 2.44
2253 2351 9.086336 CATGAACACAGTAATTTCAACAGTTTT 57.914 29.630 0.00 0.00 33.13 2.43
2254 2352 8.250332 ACATGAACACAGTAATTTCAACAGTTT 58.750 29.630 0.00 0.00 33.13 2.66
2255 2353 7.771183 ACATGAACACAGTAATTTCAACAGTT 58.229 30.769 0.00 0.00 33.13 3.16
2256 2354 7.333528 ACATGAACACAGTAATTTCAACAGT 57.666 32.000 0.00 0.00 33.13 3.55
2257 2355 9.897744 ATAACATGAACACAGTAATTTCAACAG 57.102 29.630 0.00 0.00 33.13 3.16
2258 2356 9.676195 CATAACATGAACACAGTAATTTCAACA 57.324 29.630 0.00 0.00 33.13 3.33
2259 2357 9.677567 ACATAACATGAACACAGTAATTTCAAC 57.322 29.630 0.00 0.00 33.13 3.18
2260 2358 9.891828 GACATAACATGAACACAGTAATTTCAA 57.108 29.630 0.00 0.00 33.13 2.69
2261 2359 9.061435 TGACATAACATGAACACAGTAATTTCA 57.939 29.630 0.00 0.00 33.89 2.69
2312 2410 8.037758 TGAAACCAAGAAAATTGCAAGTTCTAA 58.962 29.630 21.99 6.14 31.41 2.10
2346 2524 2.341257 ACTCTTGCATACAGCTTCACG 58.659 47.619 0.00 0.00 45.94 4.35
2364 2542 3.260740 CAATGCACACACACCAAAAACT 58.739 40.909 0.00 0.00 0.00 2.66
2496 2674 7.418337 AGGTTTACTTGGTGAAAAGTGAAAT 57.582 32.000 0.00 0.00 40.58 2.17
2637 2815 6.721208 ACCAAATCCTAAAGATCAGAAAGCAA 59.279 34.615 0.00 0.00 32.47 3.91
2649 2827 5.773176 AGGTACCAAACACCAAATCCTAAAG 59.227 40.000 15.94 0.00 38.62 1.85
2937 3142 4.837093 TCGGATGGAGGAAGTACAAATT 57.163 40.909 0.00 0.00 0.00 1.82
2945 3150 5.186198 ACAAGTATTTTCGGATGGAGGAAG 58.814 41.667 0.00 0.00 0.00 3.46
2946 3151 5.174037 ACAAGTATTTTCGGATGGAGGAA 57.826 39.130 0.00 0.00 0.00 3.36
2947 3152 4.224147 TGACAAGTATTTTCGGATGGAGGA 59.776 41.667 0.00 0.00 0.00 3.71
2948 3153 4.513442 TGACAAGTATTTTCGGATGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
2949 3154 5.817296 TGATGACAAGTATTTTCGGATGGAG 59.183 40.000 0.00 0.00 0.00 3.86
2950 3155 5.739959 TGATGACAAGTATTTTCGGATGGA 58.260 37.500 0.00 0.00 0.00 3.41
2951 3156 6.435430 TTGATGACAAGTATTTTCGGATGG 57.565 37.500 0.00 0.00 0.00 3.51
2952 3157 8.800972 CATTTTGATGACAAGTATTTTCGGATG 58.199 33.333 0.00 0.00 37.32 3.51
2953 3158 8.739039 TCATTTTGATGACAAGTATTTTCGGAT 58.261 29.630 0.00 0.00 37.32 4.18
2954 3159 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
2955 3160 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
2963 3168 9.918630 CCTCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
3009 3214 9.661954 TGGATAGAAAAGGATGTATCTAGAACT 57.338 33.333 0.00 0.00 0.00 3.01
3018 3223 9.919416 TCATCAAAATGGATAGAAAAGGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
3019 3224 8.689972 GTCATCAAAATGGATAGAAAAGGATGT 58.310 33.333 0.00 0.00 33.42 3.06
3020 3225 8.689061 TGTCATCAAAATGGATAGAAAAGGATG 58.311 33.333 0.00 0.00 33.42 3.51
3021 3226 8.827832 TGTCATCAAAATGGATAGAAAAGGAT 57.172 30.769 0.00 0.00 33.42 3.24
3022 3227 8.648698 TTGTCATCAAAATGGATAGAAAAGGA 57.351 30.769 0.00 0.00 33.42 3.36
3023 3228 8.526147 ACTTGTCATCAAAATGGATAGAAAAGG 58.474 33.333 0.00 0.00 31.30 3.11
3031 3236 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3032 3237 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3033 3238 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3034 3239 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3035 3240 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3036 3241 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3037 3242 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3038 3243 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3039 3244 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3040 3245 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3041 3246 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3042 3247 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3043 3248 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3044 3249 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3045 3250 2.277084 CCCTCCGTCCGAAAATACTTG 58.723 52.381 0.00 0.00 0.00 3.16
3046 3251 1.208776 CCCCTCCGTCCGAAAATACTT 59.791 52.381 0.00 0.00 0.00 2.24
3047 3252 0.828677 CCCCTCCGTCCGAAAATACT 59.171 55.000 0.00 0.00 0.00 2.12
3048 3253 0.179065 CCCCCTCCGTCCGAAAATAC 60.179 60.000 0.00 0.00 0.00 1.89
3049 3254 0.618393 ACCCCCTCCGTCCGAAAATA 60.618 55.000 0.00 0.00 0.00 1.40
3050 3255 0.618393 TACCCCCTCCGTCCGAAAAT 60.618 55.000 0.00 0.00 0.00 1.82
3051 3256 0.618393 ATACCCCCTCCGTCCGAAAA 60.618 55.000 0.00 0.00 0.00 2.29
3052 3257 0.618393 AATACCCCCTCCGTCCGAAA 60.618 55.000 0.00 0.00 0.00 3.46
3053 3258 1.002017 AATACCCCCTCCGTCCGAA 59.998 57.895 0.00 0.00 0.00 4.30
3054 3259 1.759299 CAATACCCCCTCCGTCCGA 60.759 63.158 0.00 0.00 0.00 4.55
3055 3260 2.803817 CCAATACCCCCTCCGTCCG 61.804 68.421 0.00 0.00 0.00 4.79
3056 3261 1.276859 AACCAATACCCCCTCCGTCC 61.277 60.000 0.00 0.00 0.00 4.79
3057 3262 0.622136 AAACCAATACCCCCTCCGTC 59.378 55.000 0.00 0.00 0.00 4.79
3058 3263 1.969713 TAAACCAATACCCCCTCCGT 58.030 50.000 0.00 0.00 0.00 4.69
3059 3264 3.588210 AATAAACCAATACCCCCTCCG 57.412 47.619 0.00 0.00 0.00 4.63
3060 3265 4.407621 CCAAAATAAACCAATACCCCCTCC 59.592 45.833 0.00 0.00 0.00 4.30
3061 3266 5.027460 ACCAAAATAAACCAATACCCCCTC 58.973 41.667 0.00 0.00 0.00 4.30
3062 3267 5.031269 ACCAAAATAAACCAATACCCCCT 57.969 39.130 0.00 0.00 0.00 4.79
3063 3268 5.364446 CCTACCAAAATAAACCAATACCCCC 59.636 44.000 0.00 0.00 0.00 5.40
3064 3269 6.097270 GTCCTACCAAAATAAACCAATACCCC 59.903 42.308 0.00 0.00 0.00 4.95
3065 3270 6.097270 GGTCCTACCAAAATAAACCAATACCC 59.903 42.308 0.00 0.00 38.42 3.69
3066 3271 7.104043 GGTCCTACCAAAATAAACCAATACC 57.896 40.000 0.00 0.00 38.42 2.73
3345 3699 9.916397 GTTCATAAATACACGTTAGAAATCCTG 57.084 33.333 0.00 0.00 0.00 3.86
3500 3874 9.017669 GTAGACAAAGTGATTTAACGTATCGAT 57.982 33.333 2.16 2.16 0.00 3.59
3587 3961 9.498176 GGACTATAAAAGAACTGAAAAGGTGTA 57.502 33.333 0.00 0.00 0.00 2.90
3591 3965 8.515414 CAAGGGACTATAAAAGAACTGAAAAGG 58.485 37.037 0.00 0.00 38.49 3.11
3653 4028 7.816031 ACAGAAAATGGATAAAGACAAGCAATG 59.184 33.333 0.00 0.00 0.00 2.82
3660 4078 8.328758 AGTATGGACAGAAAATGGATAAAGACA 58.671 33.333 0.00 0.00 0.00 3.41
3726 4144 6.042208 ACACCTAGAACTGAAAGCTTAAGACT 59.958 38.462 6.67 13.70 37.60 3.24
3820 4238 1.335324 CGCCAAGGACAGCTTCTTTTG 60.335 52.381 0.00 0.00 0.00 2.44
3831 4249 0.179097 GTCTGGATCTCGCCAAGGAC 60.179 60.000 0.00 0.00 37.52 3.85
3837 4255 1.617947 AACTGGGTCTGGATCTCGCC 61.618 60.000 0.00 0.00 0.00 5.54
3953 4371 3.815856 TCATCAACAGGATCTGAGAGC 57.184 47.619 1.59 0.00 35.18 4.09
3954 4372 4.081254 TGGTTCATCAACAGGATCTGAGAG 60.081 45.833 1.59 0.00 35.18 3.20
3963 4381 4.074970 ACTAAGCTTGGTTCATCAACAGG 58.925 43.478 10.03 0.00 33.70 4.00
3967 4385 4.518970 GGTTGACTAAGCTTGGTTCATCAA 59.481 41.667 17.25 12.93 0.00 2.57
3984 4402 4.301637 AGGAAACATTGAAACGGTTGAC 57.698 40.909 0.00 0.00 0.00 3.18
3989 4407 6.200097 CACCTAAAAAGGAAACATTGAAACGG 59.800 38.462 0.00 0.00 0.00 4.44
3990 4408 6.754675 ACACCTAAAAAGGAAACATTGAAACG 59.245 34.615 0.00 0.00 0.00 3.60
4072 4490 3.181490 GGAGTGTGGTTTGTCAAAGGAAC 60.181 47.826 0.00 0.00 0.00 3.62
4284 4707 1.985473 ACATCAGCACCAAGAGCAAA 58.015 45.000 0.00 0.00 0.00 3.68
4339 4762 2.223377 GTGAAACTCGCTCCGAAATTGT 59.777 45.455 0.00 0.00 34.74 2.71
4364 4787 0.567968 CAGCAGCGTAAAGATCGTCG 59.432 55.000 0.00 0.00 0.00 5.12
4419 4842 3.857157 TTACAGGAAAGGTGAAGCAGT 57.143 42.857 0.00 0.00 0.00 4.40
4421 4844 4.640771 AGATTACAGGAAAGGTGAAGCA 57.359 40.909 0.00 0.00 0.00 3.91
4422 4845 4.379918 GCAAGATTACAGGAAAGGTGAAGC 60.380 45.833 0.00 0.00 0.00 3.86
4555 4978 0.543883 TCACTTCTCCTCCAGCAGCT 60.544 55.000 0.00 0.00 0.00 4.24
4592 5015 0.401738 AAGGTGGTGGTGGTCTCATG 59.598 55.000 0.00 0.00 0.00 3.07
4679 5102 2.821366 GTGCTGGATGAGGGCACG 60.821 66.667 0.00 0.00 44.91 5.34
4898 5336 3.546218 GGACAAGTTCGCAGAAACAAGAC 60.546 47.826 0.00 0.00 45.90 3.01
4902 5340 2.210116 GAGGACAAGTTCGCAGAAACA 58.790 47.619 0.00 0.00 45.90 2.83
4911 5349 0.514691 CAGCAAGCGAGGACAAGTTC 59.485 55.000 0.00 0.00 0.00 3.01
4959 5938 3.788227 AACAAGCTACTGGACATTGGA 57.212 42.857 0.00 0.00 0.00 3.53
4998 5978 9.647918 AGTTCAATACCTAGAGAATCACTGATA 57.352 33.333 0.00 0.00 37.82 2.15
5014 5994 7.640240 GCATTTACGAGATTTCAGTTCAATACC 59.360 37.037 0.00 0.00 0.00 2.73
5026 6008 4.220602 AGGCCAAAAGCATTTACGAGATTT 59.779 37.500 5.01 0.00 46.50 2.17
5286 6278 5.616488 CAAAATTGCCTGCTGCTTATTTT 57.384 34.783 0.00 13.59 41.37 1.82
5461 6457 6.919775 ACTAATAGCATACAGGTAGGAAGG 57.080 41.667 0.00 0.00 32.98 3.46
5510 6507 1.279271 AGCGGCATCCTAGACTTTGTT 59.721 47.619 1.45 0.00 0.00 2.83
5524 6521 0.539438 ACAAAATCTGGGAAGCGGCA 60.539 50.000 1.45 0.00 0.00 5.69
5665 6662 7.203255 TGTCGGTATGTAGATCAAGATACTG 57.797 40.000 0.00 3.34 34.72 2.74
5719 6716 7.886446 TGATGATGTCCATATATGCAATGAACT 59.114 33.333 7.24 0.00 35.17 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.