Multiple sequence alignment - TraesCS3A01G247100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G247100 chr3A 100.000 1618 0 0 1 1618 464916076 464917693 0.000000e+00 2988.0
1 TraesCS3A01G247100 chr3A 83.140 1376 198 15 11 1359 352452340 352450972 0.000000e+00 1225.0
2 TraesCS3A01G247100 chr3A 100.000 371 0 0 1969 2339 464918044 464918414 0.000000e+00 686.0
3 TraesCS3A01G247100 chr3A 93.671 316 18 1 2024 2339 464933375 464933688 2.720000e-129 472.0
4 TraesCS3A01G247100 chr3A 91.667 156 11 1 2184 2339 191609999 191610152 5.060000e-52 215.0
5 TraesCS3A01G247100 chr3D 92.242 1650 87 11 7 1618 339845409 339843763 0.000000e+00 2300.0
6 TraesCS3A01G247100 chr3D 83.790 1351 193 10 15 1339 177015457 177014107 0.000000e+00 1258.0
7 TraesCS3A01G247100 chr3D 83.248 1373 202 13 11 1359 213677784 213676416 0.000000e+00 1236.0
8 TraesCS3A01G247100 chr3D 82.304 1328 220 13 15 1333 100398998 100400319 0.000000e+00 1136.0
9 TraesCS3A01G247100 chr3D 93.651 189 12 0 2012 2200 482188889 482188701 1.370000e-72 283.0
10 TraesCS3A01G247100 chr3D 94.000 50 3 0 1969 2018 339843453 339843404 2.490000e-10 76.8
11 TraesCS3A01G247100 chr3D 86.957 46 6 0 1393 1438 339843964 339843919 4.000000e-03 52.8
12 TraesCS3A01G247100 chr1D 87.997 1383 132 14 9 1359 286395868 286397248 0.000000e+00 1604.0
13 TraesCS3A01G247100 chr1D 93.651 189 12 0 2012 2200 243565661 243565473 1.370000e-72 283.0
14 TraesCS3A01G247100 chr6B 87.290 1369 139 11 13 1354 331069927 331068567 0.000000e+00 1531.0
15 TraesCS3A01G247100 chr6B 83.097 704 90 19 678 1354 638232541 638231840 4.270000e-172 614.0
16 TraesCS3A01G247100 chr7D 86.681 1359 166 10 9 1359 509254653 509253302 0.000000e+00 1493.0
17 TraesCS3A01G247100 chr7D 85.414 1378 169 15 7 1356 472803834 472802461 0.000000e+00 1402.0
18 TraesCS3A01G247100 chr7D 82.262 1353 211 12 15 1339 219850285 219848934 0.000000e+00 1142.0
19 TraesCS3A01G247100 chr6A 84.191 1341 199 11 7 1339 342553815 342555150 0.000000e+00 1290.0
20 TraesCS3A01G247100 chr6A 76.226 795 161 20 15 803 454767487 454768259 1.680000e-106 396.0
21 TraesCS3A01G247100 chr6A 92.308 156 10 1 2184 2339 595702848 595703001 1.090000e-53 220.0
22 TraesCS3A01G247100 chr6A 91.026 156 12 1 2184 2339 218135861 218136014 2.360000e-50 209.0
23 TraesCS3A01G247100 chr2A 83.888 1353 188 13 11 1339 470230639 470231985 0.000000e+00 1264.0
24 TraesCS3A01G247100 chr2A 83.772 949 144 9 7 947 54148517 54147571 0.000000e+00 891.0
25 TraesCS3A01G247100 chr2A 92.079 202 16 0 1999 2200 216346473 216346272 3.800000e-73 285.0
26 TraesCS3A01G247100 chr2A 90.431 209 17 3 1993 2200 337888008 337888214 2.960000e-69 272.0
27 TraesCS3A01G247100 chr2A 92.357 157 9 2 2184 2339 90211494 90211340 1.090000e-53 220.0
28 TraesCS3A01G247100 chr2A 91.667 156 10 2 2184 2339 557269711 557269559 1.820000e-51 213.0
29 TraesCS3A01G247100 chr7A 83.174 1361 200 11 7 1339 75026930 75025571 0.000000e+00 1218.0
30 TraesCS3A01G247100 chr1A 83.672 1280 184 13 84 1339 455015486 455014208 0.000000e+00 1182.0
31 TraesCS3A01G247100 chr1A 78.534 1337 213 22 15 1317 309456254 309454958 0.000000e+00 811.0
32 TraesCS3A01G247100 chr1A 82.800 907 149 5 15 916 499743260 499744164 0.000000e+00 804.0
33 TraesCS3A01G247100 chr7B 82.708 1359 198 20 11 1339 511470558 511469207 0.000000e+00 1173.0
34 TraesCS3A01G247100 chr4D 80.766 1331 199 14 15 1339 439685202 439686481 0.000000e+00 987.0
35 TraesCS3A01G247100 chr4D 93.651 189 12 0 2012 2200 25507582 25507394 1.370000e-72 283.0
36 TraesCS3A01G247100 chr2B 82.018 1140 175 9 15 1125 310816048 310814910 0.000000e+00 942.0
37 TraesCS3A01G247100 chr2B 82.712 885 106 16 499 1354 421094014 421094880 0.000000e+00 743.0
38 TraesCS3A01G247100 chr6D 80.752 1117 184 15 270 1359 32688757 32687645 0.000000e+00 843.0
39 TraesCS3A01G247100 chr6D 76.826 1191 226 24 181 1339 55399655 55400827 1.970000e-175 625.0
40 TraesCS3A01G247100 chr6D 76.986 856 183 12 11 864 286789064 286789907 5.850000e-131 477.0
41 TraesCS3A01G247100 chr6D 94.211 190 10 1 2012 2200 99464533 99464344 2.940000e-74 289.0
42 TraesCS3A01G247100 chr6D 74.328 335 81 5 1007 1339 394870398 394870729 1.130000e-28 137.0
43 TraesCS3A01G247100 chr5D 83.840 823 128 5 7 826 551855296 551856116 0.000000e+00 778.0
44 TraesCS3A01G247100 chr4B 79.027 1130 184 24 235 1320 286750627 286749507 0.000000e+00 725.0
45 TraesCS3A01G247100 chr2D 85.784 408 56 2 947 1353 352197410 352197816 4.620000e-117 431.0
46 TraesCS3A01G247100 chr5A 93.299 194 12 1 2004 2197 571792644 571792836 3.800000e-73 285.0
47 TraesCS3A01G247100 chr4A 92.821 195 14 0 2006 2200 542736080 542735886 1.370000e-72 283.0
48 TraesCS3A01G247100 chr4A 91.667 156 10 2 2184 2339 385020646 385020798 1.820000e-51 213.0
49 TraesCS3A01G247100 chrUn 93.590 156 8 1 2184 2339 112495254 112495101 5.030000e-57 231.0
50 TraesCS3A01G247100 chr5B 93.793 145 9 0 2195 2339 693546361 693546505 3.910000e-53 219.0
51 TraesCS3A01G247100 chr3B 95.918 49 2 0 1388 1436 438536484 438536436 1.930000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G247100 chr3A 464916076 464918414 2338 False 1837.000000 2988 100.000000 1 2339 2 chr3A.!!$F3 2338
1 TraesCS3A01G247100 chr3A 352450972 352452340 1368 True 1225.000000 1225 83.140000 11 1359 1 chr3A.!!$R1 1348
2 TraesCS3A01G247100 chr3D 177014107 177015457 1350 True 1258.000000 1258 83.790000 15 1339 1 chr3D.!!$R1 1324
3 TraesCS3A01G247100 chr3D 213676416 213677784 1368 True 1236.000000 1236 83.248000 11 1359 1 chr3D.!!$R2 1348
4 TraesCS3A01G247100 chr3D 100398998 100400319 1321 False 1136.000000 1136 82.304000 15 1333 1 chr3D.!!$F1 1318
5 TraesCS3A01G247100 chr3D 339843404 339845409 2005 True 809.866667 2300 91.066333 7 2018 3 chr3D.!!$R4 2011
6 TraesCS3A01G247100 chr1D 286395868 286397248 1380 False 1604.000000 1604 87.997000 9 1359 1 chr1D.!!$F1 1350
7 TraesCS3A01G247100 chr6B 331068567 331069927 1360 True 1531.000000 1531 87.290000 13 1354 1 chr6B.!!$R1 1341
8 TraesCS3A01G247100 chr6B 638231840 638232541 701 True 614.000000 614 83.097000 678 1354 1 chr6B.!!$R2 676
9 TraesCS3A01G247100 chr7D 509253302 509254653 1351 True 1493.000000 1493 86.681000 9 1359 1 chr7D.!!$R3 1350
10 TraesCS3A01G247100 chr7D 472802461 472803834 1373 True 1402.000000 1402 85.414000 7 1356 1 chr7D.!!$R2 1349
11 TraesCS3A01G247100 chr7D 219848934 219850285 1351 True 1142.000000 1142 82.262000 15 1339 1 chr7D.!!$R1 1324
12 TraesCS3A01G247100 chr6A 342553815 342555150 1335 False 1290.000000 1290 84.191000 7 1339 1 chr6A.!!$F2 1332
13 TraesCS3A01G247100 chr6A 454767487 454768259 772 False 396.000000 396 76.226000 15 803 1 chr6A.!!$F3 788
14 TraesCS3A01G247100 chr2A 470230639 470231985 1346 False 1264.000000 1264 83.888000 11 1339 1 chr2A.!!$F2 1328
15 TraesCS3A01G247100 chr2A 54147571 54148517 946 True 891.000000 891 83.772000 7 947 1 chr2A.!!$R1 940
16 TraesCS3A01G247100 chr7A 75025571 75026930 1359 True 1218.000000 1218 83.174000 7 1339 1 chr7A.!!$R1 1332
17 TraesCS3A01G247100 chr1A 455014208 455015486 1278 True 1182.000000 1182 83.672000 84 1339 1 chr1A.!!$R2 1255
18 TraesCS3A01G247100 chr1A 309454958 309456254 1296 True 811.000000 811 78.534000 15 1317 1 chr1A.!!$R1 1302
19 TraesCS3A01G247100 chr1A 499743260 499744164 904 False 804.000000 804 82.800000 15 916 1 chr1A.!!$F1 901
20 TraesCS3A01G247100 chr7B 511469207 511470558 1351 True 1173.000000 1173 82.708000 11 1339 1 chr7B.!!$R1 1328
21 TraesCS3A01G247100 chr4D 439685202 439686481 1279 False 987.000000 987 80.766000 15 1339 1 chr4D.!!$F1 1324
22 TraesCS3A01G247100 chr2B 310814910 310816048 1138 True 942.000000 942 82.018000 15 1125 1 chr2B.!!$R1 1110
23 TraesCS3A01G247100 chr2B 421094014 421094880 866 False 743.000000 743 82.712000 499 1354 1 chr2B.!!$F1 855
24 TraesCS3A01G247100 chr6D 32687645 32688757 1112 True 843.000000 843 80.752000 270 1359 1 chr6D.!!$R1 1089
25 TraesCS3A01G247100 chr6D 55399655 55400827 1172 False 625.000000 625 76.826000 181 1339 1 chr6D.!!$F1 1158
26 TraesCS3A01G247100 chr6D 286789064 286789907 843 False 477.000000 477 76.986000 11 864 1 chr6D.!!$F2 853
27 TraesCS3A01G247100 chr5D 551855296 551856116 820 False 778.000000 778 83.840000 7 826 1 chr5D.!!$F1 819
28 TraesCS3A01G247100 chr4B 286749507 286750627 1120 True 725.000000 725 79.027000 235 1320 1 chr4B.!!$R1 1085

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
968 1038 4.263683 GGGCAGATTTATTGCTAGAGGGAT 60.264 45.833 0.0 0.0 41.27 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2180 0.040499 GACACACTCTCCCCTCTCCT 59.96 60.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 9.715121 AAAATTAACATTTGAGAAGATGCATGT 57.285 25.926 2.46 0.00 32.57 3.21
70 71 7.876936 AACATTTGAGAAGATGCATGTATCT 57.123 32.000 19.38 19.38 39.03 1.98
80 81 7.338703 AGAAGATGCATGTATCTCAAATTGTGT 59.661 33.333 24.20 7.54 36.42 3.72
138 151 6.096141 TCTGTTAACTGAGGAGATGATCTCAC 59.904 42.308 22.67 15.93 45.12 3.51
179 193 5.715439 TTGGGATGAACACCTAATCAGAT 57.285 39.130 0.00 0.00 0.00 2.90
420 442 8.617290 AAGTTATCTTGTCCGACAAAAGTTAT 57.383 30.769 14.74 6.67 37.69 1.89
669 695 5.911378 AAGTACTTACTACTTCTTCCGGG 57.089 43.478 6.26 0.00 41.16 5.73
968 1038 4.263683 GGGCAGATTTATTGCTAGAGGGAT 60.264 45.833 0.00 0.00 41.27 3.85
1135 1212 0.461870 ACAGTCAGCAAGCACGACAA 60.462 50.000 14.39 0.00 31.92 3.18
1420 1509 4.187506 TGGGCTTTAAGGTTAACCAAGT 57.812 40.909 26.26 13.24 38.89 3.16
1432 1521 4.453136 GGTTAACCAAGTAGTTGCGATCAA 59.547 41.667 20.12 0.00 35.64 2.57
1462 1551 0.802494 AGGTTAACCAAGCAATCGCG 59.198 50.000 26.26 0.00 40.37 5.87
1465 1554 2.538939 GGTTAACCAAGCAATCGCGATC 60.539 50.000 23.92 11.11 38.59 3.69
1492 1581 1.173913 GGCAGTGGACCAATGTAACC 58.826 55.000 22.12 11.89 31.72 2.85
1495 1584 2.552155 GCAGTGGACCAATGTAACCAGA 60.552 50.000 22.12 0.00 31.72 3.86
1498 1587 1.002659 TGGACCAATGTAACCAGACGG 59.997 52.381 0.00 0.00 38.77 4.79
1518 1607 2.618053 GGTGATCCACTTTACCAGACG 58.382 52.381 0.00 0.00 34.40 4.18
1522 1611 0.753867 TCCACTTTACCAGACGCACA 59.246 50.000 0.00 0.00 0.00 4.57
1534 1623 2.411069 CAGACGCACACTCTCATTTGAG 59.589 50.000 0.97 0.97 43.36 3.02
1538 1627 2.611473 CGCACACTCTCATTTGAGACCT 60.611 50.000 6.17 0.00 45.48 3.85
1545 1634 4.472833 ACTCTCATTTGAGACCTTGCCTAT 59.527 41.667 6.17 0.00 45.48 2.57
2011 2111 1.290134 GGAGGATGGAGGAAGTGGTT 58.710 55.000 0.00 0.00 0.00 3.67
2014 2114 2.040412 GAGGATGGAGGAAGTGGTTGTT 59.960 50.000 0.00 0.00 0.00 2.83
2018 2118 0.476771 GGAGGAAGTGGTTGTTGGGA 59.523 55.000 0.00 0.00 0.00 4.37
2019 2119 1.133606 GGAGGAAGTGGTTGTTGGGAA 60.134 52.381 0.00 0.00 0.00 3.97
2020 2120 2.661718 GAGGAAGTGGTTGTTGGGAAA 58.338 47.619 0.00 0.00 0.00 3.13
2021 2121 3.230976 GAGGAAGTGGTTGTTGGGAAAT 58.769 45.455 0.00 0.00 0.00 2.17
2022 2122 2.965147 AGGAAGTGGTTGTTGGGAAATG 59.035 45.455 0.00 0.00 0.00 2.32
2023 2123 2.698274 GGAAGTGGTTGTTGGGAAATGT 59.302 45.455 0.00 0.00 0.00 2.71
2024 2124 3.892588 GGAAGTGGTTGTTGGGAAATGTA 59.107 43.478 0.00 0.00 0.00 2.29
2025 2125 4.022329 GGAAGTGGTTGTTGGGAAATGTAG 60.022 45.833 0.00 0.00 0.00 2.74
2026 2126 4.178956 AGTGGTTGTTGGGAAATGTAGT 57.821 40.909 0.00 0.00 0.00 2.73
2027 2127 5.313280 AGTGGTTGTTGGGAAATGTAGTA 57.687 39.130 0.00 0.00 0.00 1.82
2028 2128 5.697067 AGTGGTTGTTGGGAAATGTAGTAA 58.303 37.500 0.00 0.00 0.00 2.24
2029 2129 6.311735 AGTGGTTGTTGGGAAATGTAGTAAT 58.688 36.000 0.00 0.00 0.00 1.89
2030 2130 6.780522 AGTGGTTGTTGGGAAATGTAGTAATT 59.219 34.615 0.00 0.00 0.00 1.40
2031 2131 7.039993 AGTGGTTGTTGGGAAATGTAGTAATTC 60.040 37.037 0.00 0.00 0.00 2.17
2032 2132 6.778069 TGGTTGTTGGGAAATGTAGTAATTCA 59.222 34.615 0.00 0.00 0.00 2.57
2033 2133 7.287927 TGGTTGTTGGGAAATGTAGTAATTCAA 59.712 33.333 0.00 0.00 0.00 2.69
2034 2134 8.145122 GGTTGTTGGGAAATGTAGTAATTCAAA 58.855 33.333 0.00 0.00 0.00 2.69
2035 2135 9.535878 GTTGTTGGGAAATGTAGTAATTCAAAA 57.464 29.630 0.00 0.00 0.00 2.44
2052 2152 8.447787 AATTCAAAAATTTTCCTACGATCACG 57.552 30.769 3.41 0.00 37.38 4.35
2053 2153 5.387279 TCAAAAATTTTCCTACGATCACGC 58.613 37.500 3.41 0.00 43.96 5.34
2054 2154 5.049336 TCAAAAATTTTCCTACGATCACGCA 60.049 36.000 3.41 0.00 43.96 5.24
2055 2155 5.365403 AAAATTTTCCTACGATCACGCAA 57.635 34.783 0.00 0.00 43.96 4.85
2056 2156 5.560966 AAATTTTCCTACGATCACGCAAT 57.439 34.783 0.00 0.00 43.96 3.56
2057 2157 6.671614 AAATTTTCCTACGATCACGCAATA 57.328 33.333 0.00 0.00 43.96 1.90
2058 2158 6.861065 AATTTTCCTACGATCACGCAATAT 57.139 33.333 0.00 0.00 43.96 1.28
2059 2159 5.900339 TTTTCCTACGATCACGCAATATC 57.100 39.130 0.00 0.00 43.96 1.63
2060 2160 4.848562 TTCCTACGATCACGCAATATCT 57.151 40.909 0.00 0.00 43.96 1.98
2061 2161 5.952526 TTCCTACGATCACGCAATATCTA 57.047 39.130 0.00 0.00 43.96 1.98
2062 2162 5.952526 TCCTACGATCACGCAATATCTAA 57.047 39.130 0.00 0.00 43.96 2.10
2063 2163 5.696822 TCCTACGATCACGCAATATCTAAC 58.303 41.667 0.00 0.00 43.96 2.34
2064 2164 5.472478 TCCTACGATCACGCAATATCTAACT 59.528 40.000 0.00 0.00 43.96 2.24
2065 2165 6.652062 TCCTACGATCACGCAATATCTAACTA 59.348 38.462 0.00 0.00 43.96 2.24
2066 2166 6.962116 CCTACGATCACGCAATATCTAACTAG 59.038 42.308 0.00 0.00 43.96 2.57
2067 2167 5.700846 ACGATCACGCAATATCTAACTAGG 58.299 41.667 0.00 0.00 43.96 3.02
2068 2168 5.472478 ACGATCACGCAATATCTAACTAGGA 59.528 40.000 0.00 0.00 43.96 2.94
2069 2169 6.024664 CGATCACGCAATATCTAACTAGGAG 58.975 44.000 0.00 0.00 0.00 3.69
2070 2170 6.128254 CGATCACGCAATATCTAACTAGGAGA 60.128 42.308 0.00 0.00 0.00 3.71
2071 2171 7.414651 CGATCACGCAATATCTAACTAGGAGAT 60.415 40.741 12.53 12.53 37.43 2.75
2072 2172 6.914259 TCACGCAATATCTAACTAGGAGATG 58.086 40.000 16.02 5.92 35.30 2.90
2073 2173 5.574830 CACGCAATATCTAACTAGGAGATGC 59.425 44.000 16.02 12.51 35.30 3.91
2074 2174 5.243954 ACGCAATATCTAACTAGGAGATGCA 59.756 40.000 16.02 0.00 35.30 3.96
2075 2175 6.071108 ACGCAATATCTAACTAGGAGATGCAT 60.071 38.462 16.02 0.00 35.30 3.96
2076 2176 7.122799 ACGCAATATCTAACTAGGAGATGCATA 59.877 37.037 16.02 1.27 35.30 3.14
2077 2177 7.647318 CGCAATATCTAACTAGGAGATGCATAG 59.353 40.741 16.02 0.00 35.30 2.23
2078 2178 7.437862 GCAATATCTAACTAGGAGATGCATAGC 59.562 40.741 16.02 10.49 34.30 2.97
2079 2179 8.473219 CAATATCTAACTAGGAGATGCATAGCA 58.527 37.037 16.02 0.00 44.86 3.49
2080 2180 6.924913 ATCTAACTAGGAGATGCATAGCAA 57.075 37.500 0.00 0.00 43.62 3.91
2081 2181 6.338214 TCTAACTAGGAGATGCATAGCAAG 57.662 41.667 0.00 0.00 43.62 4.01
2082 2182 4.348863 AACTAGGAGATGCATAGCAAGG 57.651 45.455 0.00 0.00 43.62 3.61
2083 2183 3.581101 ACTAGGAGATGCATAGCAAGGA 58.419 45.455 0.00 0.00 43.62 3.36
2084 2184 3.577848 ACTAGGAGATGCATAGCAAGGAG 59.422 47.826 0.00 0.00 43.62 3.69
2085 2185 2.687297 AGGAGATGCATAGCAAGGAGA 58.313 47.619 0.00 0.00 43.62 3.71
2086 2186 2.633967 AGGAGATGCATAGCAAGGAGAG 59.366 50.000 0.00 0.00 43.62 3.20
2087 2187 2.289569 GGAGATGCATAGCAAGGAGAGG 60.290 54.545 0.00 0.00 43.62 3.69
2088 2188 1.698532 AGATGCATAGCAAGGAGAGGG 59.301 52.381 0.00 0.00 43.62 4.30
2089 2189 0.769873 ATGCATAGCAAGGAGAGGGG 59.230 55.000 0.00 0.00 43.62 4.79
2090 2190 0.326522 TGCATAGCAAGGAGAGGGGA 60.327 55.000 0.00 0.00 34.76 4.81
2091 2191 0.396060 GCATAGCAAGGAGAGGGGAG 59.604 60.000 0.00 0.00 0.00 4.30
2092 2192 2.036929 GCATAGCAAGGAGAGGGGAGA 61.037 57.143 0.00 0.00 0.00 3.71
2093 2193 1.969923 CATAGCAAGGAGAGGGGAGAG 59.030 57.143 0.00 0.00 0.00 3.20
2094 2194 1.011595 TAGCAAGGAGAGGGGAGAGT 58.988 55.000 0.00 0.00 0.00 3.24
2095 2195 0.617249 AGCAAGGAGAGGGGAGAGTG 60.617 60.000 0.00 0.00 0.00 3.51
2096 2196 0.907230 GCAAGGAGAGGGGAGAGTGT 60.907 60.000 0.00 0.00 0.00 3.55
2097 2197 0.901124 CAAGGAGAGGGGAGAGTGTG 59.099 60.000 0.00 0.00 0.00 3.82
2098 2198 0.489567 AAGGAGAGGGGAGAGTGTGT 59.510 55.000 0.00 0.00 0.00 3.72
2099 2199 0.040499 AGGAGAGGGGAGAGTGTGTC 59.960 60.000 0.00 0.00 0.00 3.67
2100 2200 0.973496 GGAGAGGGGAGAGTGTGTCC 60.973 65.000 0.00 0.00 0.00 4.02
2101 2201 0.251832 GAGAGGGGAGAGTGTGTCCA 60.252 60.000 0.00 0.00 35.57 4.02
2102 2202 0.543174 AGAGGGGAGAGTGTGTCCAC 60.543 60.000 0.00 0.00 42.17 4.02
2103 2203 1.878656 GAGGGGAGAGTGTGTCCACG 61.879 65.000 0.00 0.00 46.56 4.94
2104 2204 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
2105 2205 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
2106 2206 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
2107 2207 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
2108 2208 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
2109 2209 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
2110 2210 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
2111 2211 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
2112 2212 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
2113 2213 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
2114 2214 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
2115 2215 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
2116 2216 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
2117 2217 0.615331 TCCACGTACCCTCGTAGACT 59.385 55.000 0.00 0.00 42.27 3.24
2118 2218 0.731417 CCACGTACCCTCGTAGACTG 59.269 60.000 0.00 0.00 42.27 3.51
2119 2219 1.676916 CCACGTACCCTCGTAGACTGA 60.677 57.143 0.00 0.00 42.27 3.41
2120 2220 2.079158 CACGTACCCTCGTAGACTGAA 58.921 52.381 0.00 0.00 42.27 3.02
2121 2221 2.485426 CACGTACCCTCGTAGACTGAAA 59.515 50.000 0.00 0.00 42.27 2.69
2122 2222 2.746362 ACGTACCCTCGTAGACTGAAAG 59.254 50.000 0.00 0.00 42.35 2.62
2123 2223 3.005554 CGTACCCTCGTAGACTGAAAGA 58.994 50.000 0.00 0.00 37.43 2.52
2124 2224 3.063725 CGTACCCTCGTAGACTGAAAGAG 59.936 52.174 0.00 0.00 37.43 2.85
2125 2225 2.448453 ACCCTCGTAGACTGAAAGAGG 58.552 52.381 3.02 3.02 45.90 3.69
2129 2229 3.765026 CTCGTAGACTGAAAGAGGAAGC 58.235 50.000 0.00 0.00 37.43 3.86
2130 2230 2.161808 TCGTAGACTGAAAGAGGAAGCG 59.838 50.000 0.00 0.00 37.43 4.68
2131 2231 2.095161 CGTAGACTGAAAGAGGAAGCGT 60.095 50.000 0.00 0.00 37.43 5.07
2132 2232 3.612004 CGTAGACTGAAAGAGGAAGCGTT 60.612 47.826 0.00 0.00 37.43 4.84
2133 2233 3.477210 AGACTGAAAGAGGAAGCGTTT 57.523 42.857 0.00 0.00 37.43 3.60
2134 2234 4.602340 AGACTGAAAGAGGAAGCGTTTA 57.398 40.909 0.00 0.00 37.43 2.01
2135 2235 4.561105 AGACTGAAAGAGGAAGCGTTTAG 58.439 43.478 0.00 0.00 37.43 1.85
2136 2236 4.039366 AGACTGAAAGAGGAAGCGTTTAGT 59.961 41.667 0.00 0.00 37.43 2.24
2137 2237 5.243283 AGACTGAAAGAGGAAGCGTTTAGTA 59.757 40.000 0.00 0.00 37.43 1.82
2138 2238 5.850614 ACTGAAAGAGGAAGCGTTTAGTAA 58.149 37.500 0.00 0.00 37.43 2.24
2139 2239 5.695363 ACTGAAAGAGGAAGCGTTTAGTAAC 59.305 40.000 0.00 0.00 37.43 2.50
2152 2252 5.122328 GTTTAGTAACGCGGTTGATGTAG 57.878 43.478 12.47 0.00 0.00 2.74
2153 2253 4.439305 TTAGTAACGCGGTTGATGTAGT 57.561 40.909 12.47 0.00 0.00 2.73
2154 2254 2.872370 AGTAACGCGGTTGATGTAGTC 58.128 47.619 12.47 0.00 0.00 2.59
2155 2255 1.580704 GTAACGCGGTTGATGTAGTCG 59.419 52.381 12.47 0.00 0.00 4.18
2156 2256 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
2157 2257 0.241749 ACGCGGTTGATGTAGTCGAA 59.758 50.000 12.47 0.00 0.00 3.71
2158 2258 0.638746 CGCGGTTGATGTAGTCGAAC 59.361 55.000 0.00 0.00 0.00 3.95
2160 2260 1.973138 CGGTTGATGTAGTCGAACGT 58.027 50.000 0.00 0.00 44.71 3.99
2161 2261 1.909532 CGGTTGATGTAGTCGAACGTC 59.090 52.381 3.01 3.01 44.71 4.34
2162 2262 2.413765 CGGTTGATGTAGTCGAACGTCT 60.414 50.000 10.09 0.00 44.71 4.18
2163 2263 3.572584 GGTTGATGTAGTCGAACGTCTT 58.427 45.455 10.09 0.00 36.53 3.01
2164 2264 3.607209 GGTTGATGTAGTCGAACGTCTTC 59.393 47.826 10.09 4.37 36.53 2.87
2171 2271 3.286669 CGAACGTCTTCGCGATCC 58.713 61.111 10.88 0.00 42.72 3.36
2172 2272 1.513373 CGAACGTCTTCGCGATCCA 60.513 57.895 10.88 0.00 42.72 3.41
2173 2273 1.068832 CGAACGTCTTCGCGATCCAA 61.069 55.000 10.88 0.00 42.72 3.53
2174 2274 0.365859 GAACGTCTTCGCGATCCAAC 59.634 55.000 10.88 5.11 41.18 3.77
2175 2275 1.012486 AACGTCTTCGCGATCCAACC 61.012 55.000 10.88 0.00 41.18 3.77
2176 2276 2.505498 CGTCTTCGCGATCCAACCG 61.505 63.158 10.88 3.09 0.00 4.44
2177 2277 1.153901 GTCTTCGCGATCCAACCGA 60.154 57.895 10.88 0.00 0.00 4.69
2178 2278 0.527817 GTCTTCGCGATCCAACCGAT 60.528 55.000 10.88 0.00 0.00 4.18
2179 2279 0.248907 TCTTCGCGATCCAACCGATC 60.249 55.000 10.88 0.00 43.58 3.69
2180 2280 1.215655 CTTCGCGATCCAACCGATCC 61.216 60.000 10.88 0.00 44.07 3.36
2181 2281 1.672854 TTCGCGATCCAACCGATCCT 61.673 55.000 10.88 0.00 44.07 3.24
2182 2282 0.820482 TCGCGATCCAACCGATCCTA 60.820 55.000 3.71 0.00 44.07 2.94
2183 2283 0.387367 CGCGATCCAACCGATCCTAG 60.387 60.000 0.00 0.00 44.07 3.02
2184 2284 0.667792 GCGATCCAACCGATCCTAGC 60.668 60.000 0.00 0.00 44.07 3.42
2185 2285 0.673985 CGATCCAACCGATCCTAGCA 59.326 55.000 0.00 0.00 44.07 3.49
2186 2286 1.603172 CGATCCAACCGATCCTAGCAC 60.603 57.143 0.00 0.00 44.07 4.40
2187 2287 0.759346 ATCCAACCGATCCTAGCACC 59.241 55.000 0.00 0.00 0.00 5.01
2188 2288 1.227263 CCAACCGATCCTAGCACCG 60.227 63.158 0.00 0.00 0.00 4.94
2189 2289 1.672854 CCAACCGATCCTAGCACCGA 61.673 60.000 0.00 0.00 0.00 4.69
2190 2290 0.174845 CAACCGATCCTAGCACCGAA 59.825 55.000 0.00 0.00 0.00 4.30
2191 2291 0.175073 AACCGATCCTAGCACCGAAC 59.825 55.000 0.00 0.00 0.00 3.95
2192 2292 1.299165 CCGATCCTAGCACCGAACG 60.299 63.158 0.00 0.00 0.00 3.95
2193 2293 1.432251 CGATCCTAGCACCGAACGT 59.568 57.895 0.00 0.00 0.00 3.99
2194 2294 0.659427 CGATCCTAGCACCGAACGTA 59.341 55.000 0.00 0.00 0.00 3.57
2195 2295 1.596464 CGATCCTAGCACCGAACGTAC 60.596 57.143 0.00 0.00 0.00 3.67
2196 2296 0.379669 ATCCTAGCACCGAACGTACG 59.620 55.000 15.01 15.01 0.00 3.67
2203 2303 4.248402 CCGAACGTACGGCAAAGA 57.752 55.556 21.06 0.00 46.20 2.52
2204 2304 2.067616 CCGAACGTACGGCAAAGAG 58.932 57.895 21.06 3.43 46.20 2.85
2205 2305 0.387622 CCGAACGTACGGCAAAGAGA 60.388 55.000 21.06 0.00 46.20 3.10
2206 2306 1.411394 CGAACGTACGGCAAAGAGAA 58.589 50.000 21.06 0.00 0.00 2.87
2207 2307 1.385743 CGAACGTACGGCAAAGAGAAG 59.614 52.381 21.06 0.00 0.00 2.85
2208 2308 2.669364 GAACGTACGGCAAAGAGAAGA 58.331 47.619 21.06 0.00 0.00 2.87
2209 2309 2.061740 ACGTACGGCAAAGAGAAGAC 57.938 50.000 21.06 0.00 0.00 3.01
2210 2310 1.612463 ACGTACGGCAAAGAGAAGACT 59.388 47.619 21.06 0.00 0.00 3.24
2211 2311 2.035576 ACGTACGGCAAAGAGAAGACTT 59.964 45.455 21.06 0.00 0.00 3.01
2212 2312 2.408704 CGTACGGCAAAGAGAAGACTTG 59.591 50.000 7.57 0.00 0.00 3.16
2213 2313 1.884235 ACGGCAAAGAGAAGACTTGG 58.116 50.000 0.00 0.00 0.00 3.61
2214 2314 1.141053 ACGGCAAAGAGAAGACTTGGT 59.859 47.619 0.00 0.00 0.00 3.67
2215 2315 1.532868 CGGCAAAGAGAAGACTTGGTG 59.467 52.381 0.00 0.00 0.00 4.17
2216 2316 2.576615 GGCAAAGAGAAGACTTGGTGT 58.423 47.619 0.00 0.00 0.00 4.16
2217 2317 2.291741 GGCAAAGAGAAGACTTGGTGTG 59.708 50.000 0.00 0.00 0.00 3.82
2218 2318 2.945668 GCAAAGAGAAGACTTGGTGTGT 59.054 45.455 0.00 0.00 0.00 3.72
2219 2319 4.127171 GCAAAGAGAAGACTTGGTGTGTA 58.873 43.478 0.00 0.00 0.00 2.90
2220 2320 4.757149 GCAAAGAGAAGACTTGGTGTGTAT 59.243 41.667 0.00 0.00 0.00 2.29
2221 2321 5.239525 GCAAAGAGAAGACTTGGTGTGTATT 59.760 40.000 0.00 0.00 0.00 1.89
2222 2322 6.238759 GCAAAGAGAAGACTTGGTGTGTATTT 60.239 38.462 0.00 0.00 0.00 1.40
2223 2323 6.867662 AAGAGAAGACTTGGTGTGTATTTG 57.132 37.500 0.00 0.00 0.00 2.32
2224 2324 5.308825 AGAGAAGACTTGGTGTGTATTTGG 58.691 41.667 0.00 0.00 0.00 3.28
2225 2325 4.398319 AGAAGACTTGGTGTGTATTTGGG 58.602 43.478 0.00 0.00 0.00 4.12
2226 2326 3.154827 AGACTTGGTGTGTATTTGGGG 57.845 47.619 0.00 0.00 0.00 4.96
2227 2327 2.445525 AGACTTGGTGTGTATTTGGGGT 59.554 45.455 0.00 0.00 0.00 4.95
2228 2328 2.556622 GACTTGGTGTGTATTTGGGGTG 59.443 50.000 0.00 0.00 0.00 4.61
2229 2329 1.272212 CTTGGTGTGTATTTGGGGTGC 59.728 52.381 0.00 0.00 0.00 5.01
2230 2330 0.540830 TGGTGTGTATTTGGGGTGCC 60.541 55.000 0.00 0.00 0.00 5.01
2231 2331 1.254975 GGTGTGTATTTGGGGTGCCC 61.255 60.000 0.00 0.00 45.71 5.36
2243 2343 4.338710 GTGCCCCTTGCCCACGTA 62.339 66.667 0.00 0.00 40.16 3.57
2244 2344 3.334891 TGCCCCTTGCCCACGTAT 61.335 61.111 0.00 0.00 40.16 3.06
2245 2345 1.996187 TGCCCCTTGCCCACGTATA 60.996 57.895 0.00 0.00 40.16 1.47
2246 2346 1.349542 TGCCCCTTGCCCACGTATAT 61.350 55.000 0.00 0.00 40.16 0.86
2247 2347 0.688487 GCCCCTTGCCCACGTATATA 59.312 55.000 0.00 0.00 0.00 0.86
2248 2348 1.072648 GCCCCTTGCCCACGTATATAA 59.927 52.381 0.00 0.00 0.00 0.98
2249 2349 2.487625 GCCCCTTGCCCACGTATATAAA 60.488 50.000 0.00 0.00 0.00 1.40
2250 2350 3.408634 CCCCTTGCCCACGTATATAAAG 58.591 50.000 0.00 0.00 0.00 1.85
2251 2351 3.408634 CCCTTGCCCACGTATATAAAGG 58.591 50.000 8.49 8.49 33.90 3.11
2252 2352 3.071892 CCCTTGCCCACGTATATAAAGGA 59.928 47.826 14.43 0.00 35.73 3.36
2253 2353 4.315803 CCTTGCCCACGTATATAAAGGAG 58.684 47.826 9.45 0.00 35.73 3.69
2254 2354 4.315803 CTTGCCCACGTATATAAAGGAGG 58.684 47.826 0.00 0.00 0.00 4.30
2255 2355 2.635915 TGCCCACGTATATAAAGGAGGG 59.364 50.000 11.60 11.60 37.96 4.30
2256 2356 2.901839 GCCCACGTATATAAAGGAGGGA 59.098 50.000 16.55 0.00 37.34 4.20
2257 2357 3.056035 GCCCACGTATATAAAGGAGGGAG 60.056 52.174 16.55 0.00 37.34 4.30
2258 2358 3.514309 CCCACGTATATAAAGGAGGGAGG 59.486 52.174 10.93 0.00 37.34 4.30
2259 2359 3.514309 CCACGTATATAAAGGAGGGAGGG 59.486 52.174 0.00 0.00 0.00 4.30
2260 2360 4.413760 CACGTATATAAAGGAGGGAGGGA 58.586 47.826 0.00 0.00 0.00 4.20
2261 2361 4.463186 CACGTATATAAAGGAGGGAGGGAG 59.537 50.000 0.00 0.00 0.00 4.30
2262 2362 4.356190 ACGTATATAAAGGAGGGAGGGAGA 59.644 45.833 0.00 0.00 0.00 3.71
2263 2363 4.951094 CGTATATAAAGGAGGGAGGGAGAG 59.049 50.000 0.00 0.00 0.00 3.20
2264 2364 5.281089 CGTATATAAAGGAGGGAGGGAGAGA 60.281 48.000 0.00 0.00 0.00 3.10
2265 2365 3.628832 ATAAAGGAGGGAGGGAGAGAG 57.371 52.381 0.00 0.00 0.00 3.20
2266 2366 0.341609 AAAGGAGGGAGGGAGAGAGG 59.658 60.000 0.00 0.00 0.00 3.69
2267 2367 2.123033 GGAGGGAGGGAGAGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
2268 2368 2.123033 GAGGGAGGGAGAGAGGCC 60.123 72.222 0.00 0.00 0.00 5.19
2269 2369 4.150454 AGGGAGGGAGAGAGGCCG 62.150 72.222 0.00 0.00 0.00 6.13
2270 2370 4.144727 GGGAGGGAGAGAGGCCGA 62.145 72.222 0.00 0.00 0.00 5.54
2271 2371 2.835895 GGAGGGAGAGAGGCCGAC 60.836 72.222 0.00 0.00 0.00 4.79
2272 2372 2.835895 GAGGGAGAGAGGCCGACC 60.836 72.222 0.00 0.00 0.00 4.79
2273 2373 4.467107 AGGGAGAGAGGCCGACCC 62.467 72.222 14.67 14.67 40.71 4.46
2290 2390 3.399181 CTCCTAGGGGTGCGCCAA 61.399 66.667 19.98 1.52 36.17 4.52
2291 2391 3.391665 CTCCTAGGGGTGCGCCAAG 62.392 68.421 19.98 11.81 36.17 3.61
2292 2392 3.717294 CCTAGGGGTGCGCCAAGT 61.717 66.667 19.98 3.94 36.17 3.16
2293 2393 2.436646 CTAGGGGTGCGCCAAGTG 60.437 66.667 19.98 1.22 36.17 3.16
2294 2394 3.246112 TAGGGGTGCGCCAAGTGT 61.246 61.111 19.98 0.00 36.17 3.55
2295 2395 1.895020 CTAGGGGTGCGCCAAGTGTA 61.895 60.000 19.98 0.56 36.17 2.90
2296 2396 1.895020 TAGGGGTGCGCCAAGTGTAG 61.895 60.000 19.98 0.00 36.17 2.74
2297 2397 2.746277 GGGTGCGCCAAGTGTAGG 60.746 66.667 19.98 0.00 36.17 3.18
2298 2398 2.746277 GGTGCGCCAAGTGTAGGG 60.746 66.667 12.58 0.00 34.09 3.53
2299 2399 2.345991 GTGCGCCAAGTGTAGGGA 59.654 61.111 4.18 0.00 0.00 4.20
2300 2400 1.741770 GTGCGCCAAGTGTAGGGAG 60.742 63.158 4.18 0.00 0.00 4.30
2301 2401 2.214216 TGCGCCAAGTGTAGGGAGT 61.214 57.895 4.18 0.00 0.00 3.85
2302 2402 1.448013 GCGCCAAGTGTAGGGAGTC 60.448 63.158 0.00 0.00 0.00 3.36
2303 2403 1.218316 CGCCAAGTGTAGGGAGTCC 59.782 63.158 0.00 0.00 0.00 3.85
2304 2404 1.258445 CGCCAAGTGTAGGGAGTCCT 61.258 60.000 9.58 0.00 46.96 3.85
2305 2405 1.861982 GCCAAGTGTAGGGAGTCCTA 58.138 55.000 9.58 0.00 44.38 2.94
2321 2421 3.544698 TCCTACCAGGACTCTCAAGTT 57.455 47.619 0.00 0.00 40.06 2.66
2322 2422 3.432378 TCCTACCAGGACTCTCAAGTTC 58.568 50.000 0.00 0.00 40.06 3.01
2323 2423 3.076182 TCCTACCAGGACTCTCAAGTTCT 59.924 47.826 0.00 0.00 42.52 3.01
2324 2424 4.291513 TCCTACCAGGACTCTCAAGTTCTA 59.708 45.833 0.00 0.00 39.52 2.10
2325 2425 4.642885 CCTACCAGGACTCTCAAGTTCTAG 59.357 50.000 0.00 0.00 39.52 2.43
2326 2426 4.120946 ACCAGGACTCTCAAGTTCTAGT 57.879 45.455 0.00 0.00 39.52 2.57
2327 2427 5.258216 ACCAGGACTCTCAAGTTCTAGTA 57.742 43.478 0.00 0.00 39.52 1.82
2328 2428 5.258051 ACCAGGACTCTCAAGTTCTAGTAG 58.742 45.833 0.00 0.00 39.52 2.57
2329 2429 4.642885 CCAGGACTCTCAAGTTCTAGTAGG 59.357 50.000 0.00 0.00 39.52 3.18
2330 2430 5.502079 CAGGACTCTCAAGTTCTAGTAGGA 58.498 45.833 0.00 0.00 39.52 2.94
2331 2431 6.126409 CAGGACTCTCAAGTTCTAGTAGGAT 58.874 44.000 0.00 0.00 39.52 3.24
2332 2432 6.605594 CAGGACTCTCAAGTTCTAGTAGGATT 59.394 42.308 0.00 0.00 39.52 3.01
2333 2433 6.831868 AGGACTCTCAAGTTCTAGTAGGATTC 59.168 42.308 0.00 0.00 39.76 2.52
2334 2434 6.040054 GGACTCTCAAGTTCTAGTAGGATTCC 59.960 46.154 0.00 0.00 35.28 3.01
2335 2435 5.894964 ACTCTCAAGTTCTAGTAGGATTCCC 59.105 44.000 0.00 0.00 28.74 3.97
2336 2436 6.093617 TCTCAAGTTCTAGTAGGATTCCCT 57.906 41.667 0.00 0.00 46.62 4.20
2337 2437 6.503944 TCTCAAGTTCTAGTAGGATTCCCTT 58.496 40.000 0.00 0.00 40.78 3.95
2338 2438 6.960542 TCTCAAGTTCTAGTAGGATTCCCTTT 59.039 38.462 0.00 0.00 40.78 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.762645 ACTCATCAAATATGACCTCTTCTGTTA 58.237 33.333 0.00 0.00 38.69 2.41
1 2 7.551974 CACTCATCAAATATGACCTCTTCTGTT 59.448 37.037 0.00 0.00 38.69 3.16
2 3 7.046652 CACTCATCAAATATGACCTCTTCTGT 58.953 38.462 0.00 0.00 38.69 3.41
3 4 6.482641 CCACTCATCAAATATGACCTCTTCTG 59.517 42.308 0.00 0.00 38.69 3.02
4 5 6.409005 CCCACTCATCAAATATGACCTCTTCT 60.409 42.308 0.00 0.00 38.69 2.85
5 6 5.762218 CCCACTCATCAAATATGACCTCTTC 59.238 44.000 0.00 0.00 38.69 2.87
80 81 9.321562 CCTTAGGCGTTATAATTTTTCTAGTGA 57.678 33.333 0.00 0.00 0.00 3.41
138 151 2.426024 CAATTGTTGGAGGCAGGATCAG 59.574 50.000 0.00 0.00 0.00 2.90
179 193 3.636300 GCATCAATGGGCCACATAGTTTA 59.364 43.478 9.28 0.00 39.40 2.01
443 465 1.268992 CGGTGGGGGAGTGTTCCATA 61.269 60.000 0.00 0.00 45.98 2.74
669 695 3.631250 TCCATTATCCTCAAACCTTGGC 58.369 45.455 0.00 0.00 0.00 4.52
884 928 6.974622 AGCATCAGTGTTAAGTTTCACAAAAG 59.025 34.615 11.54 3.18 37.07 2.27
961 1031 6.838401 ATAGTCAATCTTTCCAATCCCTCT 57.162 37.500 0.00 0.00 0.00 3.69
968 1038 4.155826 CCACGCAATAGTCAATCTTTCCAA 59.844 41.667 0.00 0.00 0.00 3.53
1420 1509 2.418368 AGCCCATTTGATCGCAACTA 57.582 45.000 0.00 0.00 32.79 2.24
1432 1521 4.020573 GCTTGGTTAACCTTAAAGCCCATT 60.021 41.667 26.58 0.00 36.88 3.16
1462 1551 1.150081 CCACTGCCCCCATCTGATC 59.850 63.158 0.00 0.00 0.00 2.92
1465 1554 2.273449 GTCCACTGCCCCCATCTG 59.727 66.667 0.00 0.00 0.00 2.90
1492 1581 2.618053 GTAAAGTGGATCACCCGTCTG 58.382 52.381 0.00 0.00 37.93 3.51
1495 1584 1.278127 CTGGTAAAGTGGATCACCCGT 59.722 52.381 0.00 0.00 37.93 5.28
1498 1587 2.618053 CGTCTGGTAAAGTGGATCACC 58.382 52.381 0.00 0.00 34.49 4.02
1534 1623 2.158798 GGTTCTACCCATAGGCAAGGTC 60.159 54.545 0.00 0.00 36.11 3.85
1538 1627 1.760613 CGAGGTTCTACCCATAGGCAA 59.239 52.381 0.00 0.00 39.75 4.52
1545 1634 2.050350 CGCCTCGAGGTTCTACCCA 61.050 63.158 31.43 0.00 39.75 4.51
1975 2075 2.434336 CCTCCCCAATATGTTCAGTCGA 59.566 50.000 0.00 0.00 0.00 4.20
2026 2126 9.549509 CGTGATCGTAGGAAAATTTTTGAATTA 57.450 29.630 4.63 0.00 0.00 1.40
2027 2127 7.061789 GCGTGATCGTAGGAAAATTTTTGAATT 59.938 33.333 4.63 0.00 39.49 2.17
2028 2128 6.526674 GCGTGATCGTAGGAAAATTTTTGAAT 59.473 34.615 4.63 0.00 39.49 2.57
2029 2129 5.854338 GCGTGATCGTAGGAAAATTTTTGAA 59.146 36.000 4.63 0.00 39.49 2.69
2030 2130 5.049336 TGCGTGATCGTAGGAAAATTTTTGA 60.049 36.000 4.63 0.00 39.49 2.69
2031 2131 5.150683 TGCGTGATCGTAGGAAAATTTTTG 58.849 37.500 4.63 0.00 39.49 2.44
2032 2132 5.365403 TGCGTGATCGTAGGAAAATTTTT 57.635 34.783 4.63 0.00 39.49 1.94
2033 2133 5.365403 TTGCGTGATCGTAGGAAAATTTT 57.635 34.783 2.28 2.28 39.49 1.82
2034 2134 5.560966 ATTGCGTGATCGTAGGAAAATTT 57.439 34.783 0.00 0.00 39.49 1.82
2035 2135 6.706270 AGATATTGCGTGATCGTAGGAAAATT 59.294 34.615 0.00 0.00 39.49 1.82
2036 2136 6.223852 AGATATTGCGTGATCGTAGGAAAAT 58.776 36.000 0.00 0.00 39.49 1.82
2037 2137 5.597806 AGATATTGCGTGATCGTAGGAAAA 58.402 37.500 0.00 0.00 39.49 2.29
2038 2138 5.196341 AGATATTGCGTGATCGTAGGAAA 57.804 39.130 0.00 0.00 39.49 3.13
2039 2139 4.848562 AGATATTGCGTGATCGTAGGAA 57.151 40.909 0.00 0.00 39.49 3.36
2040 2140 5.472478 AGTTAGATATTGCGTGATCGTAGGA 59.528 40.000 0.00 0.00 39.49 2.94
2041 2141 5.700846 AGTTAGATATTGCGTGATCGTAGG 58.299 41.667 0.00 0.00 39.49 3.18
2042 2142 6.962116 CCTAGTTAGATATTGCGTGATCGTAG 59.038 42.308 0.00 0.00 39.49 3.51
2043 2143 6.652062 TCCTAGTTAGATATTGCGTGATCGTA 59.348 38.462 0.00 0.00 39.49 3.43
2044 2144 5.472478 TCCTAGTTAGATATTGCGTGATCGT 59.528 40.000 0.00 0.00 39.49 3.73
2045 2145 5.939457 TCCTAGTTAGATATTGCGTGATCG 58.061 41.667 0.00 0.00 40.37 3.69
2046 2146 7.147143 TCTCCTAGTTAGATATTGCGTGATC 57.853 40.000 0.00 0.00 0.00 2.92
2047 2147 7.542890 CATCTCCTAGTTAGATATTGCGTGAT 58.457 38.462 4.90 0.00 32.40 3.06
2048 2148 6.570571 GCATCTCCTAGTTAGATATTGCGTGA 60.571 42.308 4.90 0.00 32.40 4.35
2049 2149 5.574830 GCATCTCCTAGTTAGATATTGCGTG 59.425 44.000 4.90 0.00 32.40 5.34
2050 2150 5.243954 TGCATCTCCTAGTTAGATATTGCGT 59.756 40.000 4.90 0.00 32.40 5.24
2051 2151 5.714047 TGCATCTCCTAGTTAGATATTGCG 58.286 41.667 4.90 0.00 32.40 4.85
2052 2152 7.437862 GCTATGCATCTCCTAGTTAGATATTGC 59.562 40.741 0.19 6.88 32.40 3.56
2053 2153 8.473219 TGCTATGCATCTCCTAGTTAGATATTG 58.527 37.037 0.19 0.00 32.40 1.90
2054 2154 8.601047 TGCTATGCATCTCCTAGTTAGATATT 57.399 34.615 0.19 0.00 32.40 1.28
2055 2155 8.601047 TTGCTATGCATCTCCTAGTTAGATAT 57.399 34.615 0.19 0.75 38.76 1.63
2056 2156 7.123397 CCTTGCTATGCATCTCCTAGTTAGATA 59.877 40.741 0.19 0.00 38.76 1.98
2057 2157 6.070881 CCTTGCTATGCATCTCCTAGTTAGAT 60.071 42.308 0.19 0.13 38.76 1.98
2058 2158 5.244851 CCTTGCTATGCATCTCCTAGTTAGA 59.755 44.000 0.19 0.00 38.76 2.10
2059 2159 5.244851 TCCTTGCTATGCATCTCCTAGTTAG 59.755 44.000 0.19 0.00 38.76 2.34
2060 2160 5.147767 TCCTTGCTATGCATCTCCTAGTTA 58.852 41.667 0.19 0.00 38.76 2.24
2061 2161 3.969976 TCCTTGCTATGCATCTCCTAGTT 59.030 43.478 0.19 0.00 38.76 2.24
2062 2162 3.577848 CTCCTTGCTATGCATCTCCTAGT 59.422 47.826 0.19 0.00 38.76 2.57
2063 2163 3.831333 TCTCCTTGCTATGCATCTCCTAG 59.169 47.826 0.19 0.00 38.76 3.02
2064 2164 3.831333 CTCTCCTTGCTATGCATCTCCTA 59.169 47.826 0.19 0.00 38.76 2.94
2065 2165 2.633967 CTCTCCTTGCTATGCATCTCCT 59.366 50.000 0.19 0.00 38.76 3.69
2066 2166 2.289569 CCTCTCCTTGCTATGCATCTCC 60.290 54.545 0.19 0.00 38.76 3.71
2067 2167 2.289569 CCCTCTCCTTGCTATGCATCTC 60.290 54.545 0.19 0.00 38.76 2.75
2068 2168 1.698532 CCCTCTCCTTGCTATGCATCT 59.301 52.381 0.19 0.00 38.76 2.90
2069 2169 1.271271 CCCCTCTCCTTGCTATGCATC 60.271 57.143 0.19 0.00 38.76 3.91
2070 2170 0.769873 CCCCTCTCCTTGCTATGCAT 59.230 55.000 3.79 3.79 38.76 3.96
2071 2171 0.326522 TCCCCTCTCCTTGCTATGCA 60.327 55.000 0.00 0.00 36.47 3.96
2072 2172 0.396060 CTCCCCTCTCCTTGCTATGC 59.604 60.000 0.00 0.00 0.00 3.14
2073 2173 1.969923 CTCTCCCCTCTCCTTGCTATG 59.030 57.143 0.00 0.00 0.00 2.23
2074 2174 1.578215 ACTCTCCCCTCTCCTTGCTAT 59.422 52.381 0.00 0.00 0.00 2.97
2075 2175 1.011595 ACTCTCCCCTCTCCTTGCTA 58.988 55.000 0.00 0.00 0.00 3.49
2076 2176 0.617249 CACTCTCCCCTCTCCTTGCT 60.617 60.000 0.00 0.00 0.00 3.91
2077 2177 0.907230 ACACTCTCCCCTCTCCTTGC 60.907 60.000 0.00 0.00 0.00 4.01
2078 2178 0.901124 CACACTCTCCCCTCTCCTTG 59.099 60.000 0.00 0.00 0.00 3.61
2079 2179 0.489567 ACACACTCTCCCCTCTCCTT 59.510 55.000 0.00 0.00 0.00 3.36
2080 2180 0.040499 GACACACTCTCCCCTCTCCT 59.960 60.000 0.00 0.00 0.00 3.69
2081 2181 0.973496 GGACACACTCTCCCCTCTCC 60.973 65.000 0.00 0.00 0.00 3.71
2082 2182 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
2083 2183 0.543174 GTGGACACACTCTCCCCTCT 60.543 60.000 0.00 0.00 44.29 3.69
2084 2184 1.878656 CGTGGACACACTCTCCCCTC 61.879 65.000 3.12 0.00 45.50 4.30
2085 2185 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
2086 2186 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
2087 2187 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
2088 2188 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
2089 2189 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
2090 2190 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
2091 2191 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
2092 2192 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
2093 2193 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
2094 2194 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
2095 2195 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
2096 2196 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
2097 2197 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
2099 2199 0.731417 CAGTCTACGAGGGTACGTGG 59.269 60.000 0.00 0.00 46.02 4.94
2100 2200 1.730501 TCAGTCTACGAGGGTACGTG 58.269 55.000 0.00 0.00 46.02 4.49
2102 2202 3.005554 TCTTTCAGTCTACGAGGGTACG 58.994 50.000 0.00 0.00 39.31 3.67
2103 2203 3.377798 CCTCTTTCAGTCTACGAGGGTAC 59.622 52.174 0.00 0.00 38.04 3.34
2104 2204 3.265221 TCCTCTTTCAGTCTACGAGGGTA 59.735 47.826 0.00 0.00 41.20 3.69
2105 2205 2.041350 TCCTCTTTCAGTCTACGAGGGT 59.959 50.000 0.00 0.00 41.20 4.34
2106 2206 2.724454 TCCTCTTTCAGTCTACGAGGG 58.276 52.381 0.00 0.00 41.20 4.30
2107 2207 3.428316 GCTTCCTCTTTCAGTCTACGAGG 60.428 52.174 0.00 0.00 42.00 4.63
2108 2208 3.729462 CGCTTCCTCTTTCAGTCTACGAG 60.729 52.174 0.00 0.00 0.00 4.18
2109 2209 2.161808 CGCTTCCTCTTTCAGTCTACGA 59.838 50.000 0.00 0.00 0.00 3.43
2110 2210 2.095161 ACGCTTCCTCTTTCAGTCTACG 60.095 50.000 0.00 0.00 0.00 3.51
2111 2211 3.579335 ACGCTTCCTCTTTCAGTCTAC 57.421 47.619 0.00 0.00 0.00 2.59
2112 2212 4.602340 AAACGCTTCCTCTTTCAGTCTA 57.398 40.909 0.00 0.00 0.00 2.59
2113 2213 3.477210 AAACGCTTCCTCTTTCAGTCT 57.523 42.857 0.00 0.00 0.00 3.24
2114 2214 4.308265 ACTAAACGCTTCCTCTTTCAGTC 58.692 43.478 0.00 0.00 0.00 3.51
2115 2215 4.338379 ACTAAACGCTTCCTCTTTCAGT 57.662 40.909 0.00 0.00 0.00 3.41
2116 2216 6.154451 GTTACTAAACGCTTCCTCTTTCAG 57.846 41.667 0.00 0.00 0.00 3.02
2130 2230 4.622740 ACTACATCAACCGCGTTACTAAAC 59.377 41.667 4.92 0.00 0.00 2.01
2131 2231 4.808558 ACTACATCAACCGCGTTACTAAA 58.191 39.130 4.92 0.00 0.00 1.85
2132 2232 4.414852 GACTACATCAACCGCGTTACTAA 58.585 43.478 4.92 0.00 0.00 2.24
2133 2233 3.485711 CGACTACATCAACCGCGTTACTA 60.486 47.826 4.92 0.00 0.00 1.82
2134 2234 2.730090 CGACTACATCAACCGCGTTACT 60.730 50.000 4.92 0.00 0.00 2.24
2135 2235 1.580704 CGACTACATCAACCGCGTTAC 59.419 52.381 4.92 0.00 0.00 2.50
2136 2236 1.468127 TCGACTACATCAACCGCGTTA 59.532 47.619 4.92 0.00 0.00 3.18
2137 2237 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
2138 2238 0.241749 TTCGACTACATCAACCGCGT 59.758 50.000 4.92 0.00 0.00 6.01
2139 2239 0.638746 GTTCGACTACATCAACCGCG 59.361 55.000 0.00 0.00 0.00 6.46
2140 2240 0.638746 CGTTCGACTACATCAACCGC 59.361 55.000 0.00 0.00 0.00 5.68
2141 2241 1.909532 GACGTTCGACTACATCAACCG 59.090 52.381 0.00 0.00 0.00 4.44
2142 2242 3.213249 AGACGTTCGACTACATCAACC 57.787 47.619 0.00 0.00 0.00 3.77
2143 2243 4.802664 GAAGACGTTCGACTACATCAAC 57.197 45.455 0.00 0.00 0.00 3.18
2155 2255 0.365859 GTTGGATCGCGAAGACGTTC 59.634 55.000 15.24 4.43 41.98 3.95
2156 2256 1.012486 GGTTGGATCGCGAAGACGTT 61.012 55.000 15.24 0.00 41.98 3.99
2157 2257 1.445582 GGTTGGATCGCGAAGACGT 60.446 57.895 15.24 0.00 41.98 4.34
2158 2258 2.505498 CGGTTGGATCGCGAAGACG 61.505 63.158 15.24 8.74 42.93 4.18
2159 2259 0.527817 ATCGGTTGGATCGCGAAGAC 60.528 55.000 15.24 9.41 0.00 3.01
2160 2260 0.248907 GATCGGTTGGATCGCGAAGA 60.249 55.000 15.24 4.68 42.02 2.87
2161 2261 2.217112 GATCGGTTGGATCGCGAAG 58.783 57.895 15.24 0.00 42.02 3.79
2162 2262 4.412933 GATCGGTTGGATCGCGAA 57.587 55.556 15.24 0.00 42.02 4.70
2168 2268 0.759346 GGTGCTAGGATCGGTTGGAT 59.241 55.000 0.00 0.00 38.35 3.41
2169 2269 1.672854 CGGTGCTAGGATCGGTTGGA 61.673 60.000 9.33 0.00 0.00 3.53
2170 2270 1.227263 CGGTGCTAGGATCGGTTGG 60.227 63.158 9.33 0.00 0.00 3.77
2171 2271 0.174845 TTCGGTGCTAGGATCGGTTG 59.825 55.000 17.34 0.00 0.00 3.77
2172 2272 0.175073 GTTCGGTGCTAGGATCGGTT 59.825 55.000 17.34 0.00 0.00 4.44
2173 2273 1.814527 GTTCGGTGCTAGGATCGGT 59.185 57.895 17.34 0.00 0.00 4.69
2174 2274 1.299165 CGTTCGGTGCTAGGATCGG 60.299 63.158 17.34 0.00 0.00 4.18
2175 2275 0.659427 TACGTTCGGTGCTAGGATCG 59.341 55.000 11.11 11.11 0.00 3.69
2176 2276 1.596464 CGTACGTTCGGTGCTAGGATC 60.596 57.143 7.22 0.00 0.00 3.36
2177 2277 0.379669 CGTACGTTCGGTGCTAGGAT 59.620 55.000 7.22 0.00 0.00 3.24
2178 2278 1.647545 CCGTACGTTCGGTGCTAGGA 61.648 60.000 23.71 0.00 44.77 2.94
2179 2279 1.226491 CCGTACGTTCGGTGCTAGG 60.226 63.158 23.71 0.00 44.77 3.02
2180 2280 4.372235 CCGTACGTTCGGTGCTAG 57.628 61.111 23.71 0.00 44.77 3.42
2187 2287 1.385743 CTTCTCTTTGCCGTACGTTCG 59.614 52.381 15.21 7.68 0.00 3.95
2188 2288 2.407696 GTCTTCTCTTTGCCGTACGTTC 59.592 50.000 15.21 6.17 0.00 3.95
2189 2289 2.035576 AGTCTTCTCTTTGCCGTACGTT 59.964 45.455 15.21 0.00 0.00 3.99
2190 2290 1.612463 AGTCTTCTCTTTGCCGTACGT 59.388 47.619 15.21 0.00 0.00 3.57
2191 2291 2.349297 AGTCTTCTCTTTGCCGTACG 57.651 50.000 8.69 8.69 0.00 3.67
2192 2292 2.737252 CCAAGTCTTCTCTTTGCCGTAC 59.263 50.000 0.00 0.00 0.00 3.67
2193 2293 2.367567 ACCAAGTCTTCTCTTTGCCGTA 59.632 45.455 0.00 0.00 0.00 4.02
2194 2294 1.141053 ACCAAGTCTTCTCTTTGCCGT 59.859 47.619 0.00 0.00 0.00 5.68
2195 2295 1.532868 CACCAAGTCTTCTCTTTGCCG 59.467 52.381 0.00 0.00 0.00 5.69
2196 2296 2.291741 CACACCAAGTCTTCTCTTTGCC 59.708 50.000 0.00 0.00 0.00 4.52
2197 2297 2.945668 ACACACCAAGTCTTCTCTTTGC 59.054 45.455 0.00 0.00 0.00 3.68
2198 2298 6.867662 AATACACACCAAGTCTTCTCTTTG 57.132 37.500 0.00 0.00 0.00 2.77
2199 2299 6.263168 CCAAATACACACCAAGTCTTCTCTTT 59.737 38.462 0.00 0.00 0.00 2.52
2200 2300 5.765182 CCAAATACACACCAAGTCTTCTCTT 59.235 40.000 0.00 0.00 0.00 2.85
2201 2301 5.308825 CCAAATACACACCAAGTCTTCTCT 58.691 41.667 0.00 0.00 0.00 3.10
2202 2302 4.455877 CCCAAATACACACCAAGTCTTCTC 59.544 45.833 0.00 0.00 0.00 2.87
2203 2303 4.398319 CCCAAATACACACCAAGTCTTCT 58.602 43.478 0.00 0.00 0.00 2.85
2204 2304 3.506067 CCCCAAATACACACCAAGTCTTC 59.494 47.826 0.00 0.00 0.00 2.87
2205 2305 3.117284 ACCCCAAATACACACCAAGTCTT 60.117 43.478 0.00 0.00 0.00 3.01
2206 2306 2.445525 ACCCCAAATACACACCAAGTCT 59.554 45.455 0.00 0.00 0.00 3.24
2207 2307 2.556622 CACCCCAAATACACACCAAGTC 59.443 50.000 0.00 0.00 0.00 3.01
2208 2308 2.593026 CACCCCAAATACACACCAAGT 58.407 47.619 0.00 0.00 0.00 3.16
2209 2309 1.272212 GCACCCCAAATACACACCAAG 59.728 52.381 0.00 0.00 0.00 3.61
2210 2310 1.333177 GCACCCCAAATACACACCAA 58.667 50.000 0.00 0.00 0.00 3.67
2211 2311 0.540830 GGCACCCCAAATACACACCA 60.541 55.000 0.00 0.00 0.00 4.17
2212 2312 2.272923 GGCACCCCAAATACACACC 58.727 57.895 0.00 0.00 0.00 4.16
2228 2328 0.688487 TATATACGTGGGCAAGGGGC 59.312 55.000 0.00 0.00 43.74 5.80
2229 2329 3.408634 CTTTATATACGTGGGCAAGGGG 58.591 50.000 0.00 0.00 0.00 4.79
2230 2330 3.071892 TCCTTTATATACGTGGGCAAGGG 59.928 47.826 0.00 0.00 31.82 3.95
2231 2331 4.315803 CTCCTTTATATACGTGGGCAAGG 58.684 47.826 0.00 3.69 0.00 3.61
2232 2332 4.315803 CCTCCTTTATATACGTGGGCAAG 58.684 47.826 0.00 0.00 0.00 4.01
2233 2333 3.071892 CCCTCCTTTATATACGTGGGCAA 59.928 47.826 0.00 0.00 0.00 4.52
2234 2334 2.635915 CCCTCCTTTATATACGTGGGCA 59.364 50.000 0.00 0.00 0.00 5.36
2235 2335 2.901839 TCCCTCCTTTATATACGTGGGC 59.098 50.000 0.00 0.00 33.77 5.36
2236 2336 3.514309 CCTCCCTCCTTTATATACGTGGG 59.486 52.174 0.00 0.00 34.98 4.61
2237 2337 3.514309 CCCTCCCTCCTTTATATACGTGG 59.486 52.174 0.00 0.00 0.00 4.94
2238 2338 4.413760 TCCCTCCCTCCTTTATATACGTG 58.586 47.826 0.00 0.00 0.00 4.49
2239 2339 4.356190 TCTCCCTCCCTCCTTTATATACGT 59.644 45.833 0.00 0.00 0.00 3.57
2240 2340 4.931914 TCTCCCTCCCTCCTTTATATACG 58.068 47.826 0.00 0.00 0.00 3.06
2241 2341 6.155247 TCTCTCCCTCCCTCCTTTATATAC 57.845 45.833 0.00 0.00 0.00 1.47
2242 2342 5.256626 CCTCTCTCCCTCCCTCCTTTATATA 59.743 48.000 0.00 0.00 0.00 0.86
2243 2343 4.046618 CCTCTCTCCCTCCCTCCTTTATAT 59.953 50.000 0.00 0.00 0.00 0.86
2244 2344 3.403051 CCTCTCTCCCTCCCTCCTTTATA 59.597 52.174 0.00 0.00 0.00 0.98
2245 2345 2.181196 CCTCTCTCCCTCCCTCCTTTAT 59.819 54.545 0.00 0.00 0.00 1.40
2246 2346 1.576272 CCTCTCTCCCTCCCTCCTTTA 59.424 57.143 0.00 0.00 0.00 1.85
2247 2347 0.341609 CCTCTCTCCCTCCCTCCTTT 59.658 60.000 0.00 0.00 0.00 3.11
2248 2348 2.023532 CCTCTCTCCCTCCCTCCTT 58.976 63.158 0.00 0.00 0.00 3.36
2249 2349 2.710826 GCCTCTCTCCCTCCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
2250 2350 2.123033 GCCTCTCTCCCTCCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
2251 2351 2.123033 GGCCTCTCTCCCTCCCTC 60.123 72.222 0.00 0.00 0.00 4.30
2252 2352 4.150454 CGGCCTCTCTCCCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
2253 2353 4.144727 TCGGCCTCTCTCCCTCCC 62.145 72.222 0.00 0.00 0.00 4.30
2254 2354 2.835895 GTCGGCCTCTCTCCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
2255 2355 2.835895 GGTCGGCCTCTCTCCCTC 60.836 72.222 0.00 0.00 0.00 4.30
2256 2356 4.467107 GGGTCGGCCTCTCTCCCT 62.467 72.222 5.77 0.00 35.63 4.20
2257 2357 4.467107 AGGGTCGGCCTCTCTCCC 62.467 72.222 5.77 5.32 38.50 4.30
2258 2358 2.835895 GAGGGTCGGCCTCTCTCC 60.836 72.222 5.77 2.17 32.67 3.71
2259 2359 1.997256 TAGGAGGGTCGGCCTCTCTC 61.997 65.000 19.66 14.04 35.73 3.20
2260 2360 2.002018 CTAGGAGGGTCGGCCTCTCT 62.002 65.000 19.66 11.31 35.73 3.10
2261 2361 1.529713 CTAGGAGGGTCGGCCTCTC 60.530 68.421 5.77 11.11 35.73 3.20
2262 2362 2.604152 CTAGGAGGGTCGGCCTCT 59.396 66.667 5.77 0.18 35.73 3.69
2263 2363 2.522193 CCTAGGAGGGTCGGCCTC 60.522 72.222 5.77 0.86 35.73 4.70
2273 2373 3.391665 CTTGGCGCACCCCTAGGAG 62.392 68.421 11.48 0.00 36.73 3.69
2274 2374 3.399181 CTTGGCGCACCCCTAGGA 61.399 66.667 11.48 0.00 36.73 2.94
2275 2375 3.717294 ACTTGGCGCACCCCTAGG 61.717 66.667 10.83 0.06 40.04 3.02
2276 2376 1.895020 TACACTTGGCGCACCCCTAG 61.895 60.000 10.83 0.00 34.48 3.02
2277 2377 1.895020 CTACACTTGGCGCACCCCTA 61.895 60.000 10.83 0.00 33.59 3.53
2278 2378 3.246112 TACACTTGGCGCACCCCT 61.246 61.111 10.83 0.00 33.59 4.79
2279 2379 2.746277 CTACACTTGGCGCACCCC 60.746 66.667 10.83 0.00 33.59 4.95
2280 2380 2.746277 CCTACACTTGGCGCACCC 60.746 66.667 10.83 0.00 33.59 4.61
2281 2381 2.746277 CCCTACACTTGGCGCACC 60.746 66.667 10.83 0.00 0.00 5.01
2282 2382 1.741770 CTCCCTACACTTGGCGCAC 60.742 63.158 10.83 0.00 0.00 5.34
2283 2383 2.167398 GACTCCCTACACTTGGCGCA 62.167 60.000 10.83 0.00 0.00 6.09
2284 2384 1.448013 GACTCCCTACACTTGGCGC 60.448 63.158 0.00 0.00 0.00 6.53
2285 2385 1.218316 GGACTCCCTACACTTGGCG 59.782 63.158 0.00 0.00 0.00 5.69
2286 2386 1.861982 TAGGACTCCCTACACTTGGC 58.138 55.000 0.00 0.00 43.97 4.52
2301 2401 3.076182 AGAACTTGAGAGTCCTGGTAGGA 59.924 47.826 0.00 0.00 43.43 2.94
2302 2402 3.436243 AGAACTTGAGAGTCCTGGTAGG 58.564 50.000 0.00 0.00 34.21 3.18
2303 2403 5.258051 ACTAGAACTTGAGAGTCCTGGTAG 58.742 45.833 0.00 0.00 34.21 3.18
2304 2404 5.258216 ACTAGAACTTGAGAGTCCTGGTA 57.742 43.478 0.00 0.00 34.21 3.25
2305 2405 4.120946 ACTAGAACTTGAGAGTCCTGGT 57.879 45.455 0.00 0.00 34.21 4.00
2306 2406 4.642885 CCTACTAGAACTTGAGAGTCCTGG 59.357 50.000 0.00 0.00 34.21 4.45
2307 2407 5.502079 TCCTACTAGAACTTGAGAGTCCTG 58.498 45.833 0.00 0.00 34.21 3.86
2308 2408 5.782677 TCCTACTAGAACTTGAGAGTCCT 57.217 43.478 0.00 0.00 34.21 3.85
2309 2409 6.040054 GGAATCCTACTAGAACTTGAGAGTCC 59.960 46.154 0.00 0.00 34.21 3.85
2310 2410 6.040054 GGGAATCCTACTAGAACTTGAGAGTC 59.960 46.154 0.00 0.00 34.21 3.36
2311 2411 5.894964 GGGAATCCTACTAGAACTTGAGAGT 59.105 44.000 0.00 0.00 37.87 3.24
2312 2412 6.133356 AGGGAATCCTACTAGAACTTGAGAG 58.867 44.000 0.00 0.00 42.75 3.20
2313 2413 6.093617 AGGGAATCCTACTAGAACTTGAGA 57.906 41.667 0.00 0.00 42.75 3.27
2314 2414 6.800072 AAGGGAATCCTACTAGAACTTGAG 57.200 41.667 0.00 0.00 44.07 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.