Multiple sequence alignment - TraesCS3A01G246000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G246000 chr3A 100.000 6789 0 0 1 6789 461785295 461792083 0.000000e+00 12538
1 TraesCS3A01G246000 chr3A 100.000 210 0 0 7179 7388 461792473 461792682 8.990000e-104 388
2 TraesCS3A01G246000 chr3D 92.070 5006 208 48 1 4879 341513339 341508396 0.000000e+00 6870
3 TraesCS3A01G246000 chr3D 95.362 1919 57 7 4861 6757 341505134 341503226 0.000000e+00 3022
4 TraesCS3A01G246000 chr3B 92.959 4048 159 48 632 4592 440411384 440407376 0.000000e+00 5781
5 TraesCS3A01G246000 chr3B 93.888 2127 75 18 4659 6757 440407377 440405278 0.000000e+00 3157
6 TraesCS3A01G246000 chr3B 96.190 210 8 0 7179 7388 794381097 794380888 1.970000e-90 344
7 TraesCS3A01G246000 chr4B 83.238 525 60 11 1 523 633671582 633671084 2.430000e-124 457
8 TraesCS3A01G246000 chr4B 78.995 219 29 10 296 502 396525863 396526076 4.650000e-27 134
9 TraesCS3A01G246000 chr5A 81.538 520 64 19 1 509 448527659 448527161 4.150000e-107 399
10 TraesCS3A01G246000 chr7D 79.813 535 74 15 1 523 365975126 365975638 7.050000e-95 359
11 TraesCS3A01G246000 chr5D 95.261 211 9 1 7179 7388 13982295 13982505 4.270000e-87 333
12 TraesCS3A01G246000 chr6B 88.087 277 33 0 1 277 636188946 636188670 5.530000e-86 329
13 TraesCS3A01G246000 chr6B 94.286 210 12 0 7179 7388 115025600 115025809 9.250000e-84 322
14 TraesCS3A01G246000 chr6B 94.286 210 12 0 7179 7388 172025827 172025618 9.250000e-84 322
15 TraesCS3A01G246000 chr4A 94.286 210 12 0 7179 7388 403379683 403379474 9.250000e-84 322
16 TraesCS3A01G246000 chr1B 93.119 218 15 0 1 218 328940503 328940286 3.330000e-83 320
17 TraesCS3A01G246000 chr1B 79.175 509 68 23 1 509 105554505 105554975 1.200000e-82 318
18 TraesCS3A01G246000 chr1B 73.103 580 110 30 5134 5689 649053921 649054478 1.650000e-36 165
19 TraesCS3A01G246000 chr1B 89.362 94 10 0 1768 1861 649051030 649051123 1.300000e-22 119
20 TraesCS3A01G246000 chr7B 93.839 211 11 2 7179 7388 690093505 690093296 4.300000e-82 316
21 TraesCS3A01G246000 chr7B 93.810 210 13 0 7179 7388 690118965 690118756 4.300000e-82 316
22 TraesCS3A01G246000 chr7B 93.720 207 13 0 7182 7388 440199189 440198983 2.000000e-80 311
23 TraesCS3A01G246000 chr1A 79.388 490 68 15 1 479 462632921 462632454 1.550000e-81 315
24 TraesCS3A01G246000 chr1A 77.517 298 40 17 5399 5689 562320272 562320549 3.570000e-33 154
25 TraesCS3A01G246000 chr5B 93.333 210 14 0 7179 7388 18581608 18581817 2.000000e-80 311
26 TraesCS3A01G246000 chrUn 85.409 281 40 1 1 281 33078766 33079045 2.610000e-74 291
27 TraesCS3A01G246000 chrUn 79.612 206 26 11 321 512 31839623 31839420 4.650000e-27 134
28 TraesCS3A01G246000 chrUn 79.126 206 27 11 321 512 31854157 31853954 2.160000e-25 128
29 TraesCS3A01G246000 chr1D 73.276 580 106 34 5134 5689 469218888 469219442 4.580000e-37 167
30 TraesCS3A01G246000 chr1D 90.826 109 10 0 1492 1600 278890768 278890876 5.970000e-31 147
31 TraesCS3A01G246000 chr1D 80.925 173 28 3 341 509 287607343 287607514 1.670000e-26 132
32 TraesCS3A01G246000 chr2D 87.200 125 16 0 385 509 509121606 509121482 7.730000e-30 143
33 TraesCS3A01G246000 chr2D 80.097 206 25 11 321 512 635476714 635476917 1.000000e-28 139
34 TraesCS3A01G246000 chr2D 80.097 206 25 11 321 512 635518647 635518850 1.000000e-28 139
35 TraesCS3A01G246000 chr6D 83.846 130 20 1 381 509 380658228 380658099 1.010000e-23 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G246000 chr3A 461785295 461792682 7387 False 6463 12538 100.0000 1 7388 2 chr3A.!!$F1 7387
1 TraesCS3A01G246000 chr3D 341503226 341513339 10113 True 4946 6870 93.7160 1 6757 2 chr3D.!!$R1 6756
2 TraesCS3A01G246000 chr3B 440405278 440411384 6106 True 4469 5781 93.4235 632 6757 2 chr3B.!!$R2 6125
3 TraesCS3A01G246000 chr7D 365975126 365975638 512 False 359 359 79.8130 1 523 1 chr7D.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 350 0.191064 AAGAGGGGTCTGTCTCACCA 59.809 55.000 0.00 0.00 35.35 4.17 F
347 352 0.321996 GAGGGGTCTGTCTCACCAAC 59.678 60.000 0.00 0.00 35.35 3.77 F
944 1008 0.395862 TCCGTCTCCATCACTCCTCC 60.396 60.000 0.00 0.00 0.00 4.30 F
945 1009 0.396417 CCGTCTCCATCACTCCTCCT 60.396 60.000 0.00 0.00 0.00 3.69 F
1221 1308 0.606401 CCCATGTGTTCTGCCGAGTT 60.606 55.000 0.00 0.00 0.00 3.01 F
1880 1985 1.023513 GCAAGAGCGATTCACTGGCT 61.024 55.000 0.00 0.00 42.24 4.75 F
2220 2358 1.398390 GGATGGAGTGCATTCGTCAAC 59.602 52.381 12.87 2.62 0.00 3.18 F
4201 4364 0.560688 ACCTGTTTGGGGATGGTTGT 59.439 50.000 0.00 0.00 41.11 3.32 F
4608 4867 0.243907 GTGCACTCTAGCGTCTTGGA 59.756 55.000 10.32 0.00 37.31 3.53 F
5173 8757 0.249073 ATGATGTAGAGTGCCGTCGC 60.249 55.000 0.00 0.00 0.00 5.19 F
6008 9593 1.115467 ACATTACCTCTCTGGCCTCG 58.885 55.000 3.32 0.00 40.22 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1372 1468 0.109412 GGTACCTCGTTGTCGACCAG 60.109 60.000 14.12 4.35 41.35 4.00 R
2038 2175 2.627699 GCCAAAAGACCACCTCATGAAA 59.372 45.455 0.00 0.00 0.00 2.69 R
2439 2578 2.190981 GGCAACATTACCGAGACTACG 58.809 52.381 0.00 0.00 0.00 3.51 R
2913 3053 4.986622 ACAAGAAGCAACTCAAAACTGTC 58.013 39.130 0.00 0.00 0.00 3.51 R
3035 3175 5.538053 TGCCACAATTAAATGACCTTTGAGA 59.462 36.000 0.00 0.00 0.00 3.27 R
3240 3381 0.247736 ACAGGGTGCTGACGAGATTC 59.752 55.000 0.00 0.00 0.00 2.52 R
4209 4372 0.532862 CGTTAGGGATGCAAGCGGAT 60.533 55.000 0.00 0.00 0.00 4.18 R
5207 8791 0.880718 GATCCCGAAACCGATCCAGC 60.881 60.000 0.00 0.00 30.64 4.85 R
6313 9898 0.035152 TGCTCATGAACCTGCGGAAT 60.035 50.000 0.00 0.00 0.00 3.01 R
6316 9901 0.169672 CTTTGCTCATGAACCTGCGG 59.830 55.000 0.00 0.00 0.00 5.69 R
7359 10949 0.171007 CGGACGATGCTGCCAATTTT 59.829 50.000 0.00 0.00 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 2.353610 GGCCGACCGGAAGAGGTTA 61.354 63.158 9.46 0.00 46.09 2.85
110 111 1.457346 GAAGAGGTTAGGGACGACGA 58.543 55.000 0.00 0.00 0.00 4.20
161 162 1.598130 GGCAACACAGAGAACGCCT 60.598 57.895 0.00 0.00 36.58 5.52
175 176 2.908688 ACGCCTGCCAAATTCTTTTT 57.091 40.000 0.00 0.00 0.00 1.94
207 208 0.318441 GCGGAGACAGCTATGGCATA 59.682 55.000 7.06 7.06 36.64 3.14
220 221 4.174129 GCATAACGCGGTGGTGGC 62.174 66.667 7.07 0.21 0.00 5.01
252 253 4.887615 TGGAACACAATGCGACCA 57.112 50.000 0.00 0.00 0.00 4.02
345 350 0.191064 AAGAGGGGTCTGTCTCACCA 59.809 55.000 0.00 0.00 35.35 4.17
347 352 0.321996 GAGGGGTCTGTCTCACCAAC 59.678 60.000 0.00 0.00 35.35 3.77
375 380 2.844195 ATGGCAGGACAAGGGCACA 61.844 57.895 0.00 0.00 42.68 4.57
378 383 2.111043 CAGGACAAGGGCACACGT 59.889 61.111 0.00 0.00 0.00 4.49
394 410 2.332514 GTCCGTGTGTCCGTTCGA 59.667 61.111 0.00 0.00 0.00 3.71
409 425 2.357517 CGACCGCAAACTCAGCCT 60.358 61.111 0.00 0.00 0.00 4.58
417 433 2.350772 CGCAAACTCAGCCTAAACTTGG 60.351 50.000 0.00 0.00 0.00 3.61
421 437 4.373156 AACTCAGCCTAAACTTGGACAT 57.627 40.909 0.00 0.00 0.00 3.06
427 443 6.480763 TCAGCCTAAACTTGGACATGAAATA 58.519 36.000 0.00 0.00 0.00 1.40
467 483 4.719369 GACGACGGTCCGCTTGCT 62.719 66.667 12.28 0.00 37.19 3.91
492 508 0.891904 GCGTTGGGAGGCCTGTTTTA 60.892 55.000 12.00 0.00 0.00 1.52
494 510 2.167662 CGTTGGGAGGCCTGTTTTATT 58.832 47.619 12.00 0.00 0.00 1.40
502 518 4.698780 GGAGGCCTGTTTTATTCGTTTACT 59.301 41.667 12.00 0.00 0.00 2.24
518 534 3.358111 TTACTCCCAAATGAATGCGGA 57.642 42.857 0.00 0.00 0.00 5.54
592 636 1.469308 TCGCTCTCTTTCGTCCTCTTC 59.531 52.381 0.00 0.00 0.00 2.87
593 637 1.470890 CGCTCTCTTTCGTCCTCTTCT 59.529 52.381 0.00 0.00 0.00 2.85
594 638 2.477189 CGCTCTCTTTCGTCCTCTTCTC 60.477 54.545 0.00 0.00 0.00 2.87
625 669 1.788258 CGCAGCACTGTATGATAGGG 58.212 55.000 0.00 0.00 0.00 3.53
627 671 2.608998 CGCAGCACTGTATGATAGGGAG 60.609 54.545 0.00 0.00 0.00 4.30
702 746 4.789123 AAGCCCCGCGCGGTTTAT 62.789 61.111 43.12 25.81 44.76 1.40
705 749 4.841861 CCCCGCGCGGTTTATCCA 62.842 66.667 43.12 0.00 35.57 3.41
746 809 2.446802 CCCCCTCTGCCTCCTACC 60.447 72.222 0.00 0.00 0.00 3.18
747 810 2.446802 CCCCTCTGCCTCCTACCC 60.447 72.222 0.00 0.00 0.00 3.69
748 811 2.699496 CCCTCTGCCTCCTACCCT 59.301 66.667 0.00 0.00 0.00 4.34
749 812 1.665948 CCCCTCTGCCTCCTACCCTA 61.666 65.000 0.00 0.00 0.00 3.53
750 813 0.470268 CCCTCTGCCTCCTACCCTAC 60.470 65.000 0.00 0.00 0.00 3.18
863 927 4.760047 CACCCACTCCGCTTCCCG 62.760 72.222 0.00 0.00 0.00 5.14
944 1008 0.395862 TCCGTCTCCATCACTCCTCC 60.396 60.000 0.00 0.00 0.00 4.30
945 1009 0.396417 CCGTCTCCATCACTCCTCCT 60.396 60.000 0.00 0.00 0.00 3.69
946 1010 1.028905 CGTCTCCATCACTCCTCCTC 58.971 60.000 0.00 0.00 0.00 3.71
1221 1308 0.606401 CCCATGTGTTCTGCCGAGTT 60.606 55.000 0.00 0.00 0.00 3.01
1372 1468 1.425412 TTACGCGCAAGTTTCTCTCC 58.575 50.000 5.73 0.00 41.68 3.71
1468 1572 1.800586 TGTGAGCTGAACGATCAAAGC 59.199 47.619 0.00 0.00 40.18 3.51
1540 1644 2.433318 AGCGAGGAAGCTTGCGAC 60.433 61.111 12.66 9.84 46.80 5.19
1865 1970 6.260870 ACATATCTATCGAGGTACTGCAAG 57.739 41.667 0.00 0.00 41.55 4.01
1880 1985 1.023513 GCAAGAGCGATTCACTGGCT 61.024 55.000 0.00 0.00 42.24 4.75
1881 1986 1.446907 CAAGAGCGATTCACTGGCTT 58.553 50.000 0.00 0.00 39.28 4.35
1882 1987 2.621338 CAAGAGCGATTCACTGGCTTA 58.379 47.619 0.00 0.00 39.28 3.09
1948 2081 7.016072 GCCCACCTGAGATATATAGAATGCTAT 59.984 40.741 0.00 0.00 40.38 2.97
1968 2105 7.154656 TGCTATGACATATCATGAGGTGTTAC 58.845 38.462 14.70 6.24 45.54 2.50
2038 2175 3.159472 TGGTCATCTGCATTTGCTTTCT 58.841 40.909 3.94 0.00 42.66 2.52
2077 2214 9.228949 TCTTTTGGCTATAATTTACCGTTACAA 57.771 29.630 0.00 0.00 0.00 2.41
2220 2358 1.398390 GGATGGAGTGCATTCGTCAAC 59.602 52.381 12.87 2.62 0.00 3.18
2429 2568 4.112634 TCCTGCACTTTTTAACCAGGAT 57.887 40.909 3.71 0.00 45.13 3.24
2439 2578 7.862873 CACTTTTTAACCAGGATTCAAGTCTTC 59.137 37.037 0.00 0.00 0.00 2.87
2583 2722 2.526432 ACAAGTCGCTTCCTCTCCTTA 58.474 47.619 0.00 0.00 0.00 2.69
2633 2772 6.530181 CGACTAATGCACAGTTATAGTGTTCA 59.470 38.462 4.40 0.00 39.17 3.18
2770 2909 4.054780 TGGGCGAATCAGTTATAGTGTC 57.945 45.455 0.00 0.00 0.00 3.67
2845 2984 5.865085 TGTCAGTCCTGTGCTAACTATTTT 58.135 37.500 0.00 0.00 0.00 1.82
2913 3053 1.421646 AGGTTCAGTTCCCTGGTGAAG 59.578 52.381 0.00 0.00 39.31 3.02
3099 3239 3.896888 AGCCATTCAGATTTGTTTGGTCA 59.103 39.130 8.31 0.00 33.11 4.02
3209 3350 9.342308 CTATTTTGAAAGTGCTCTATCCCATTA 57.658 33.333 0.00 0.00 0.00 1.90
3211 3352 8.593945 TTTTGAAAGTGCTCTATCCCATTATT 57.406 30.769 0.00 0.00 0.00 1.40
3212 3353 7.572523 TTGAAAGTGCTCTATCCCATTATTG 57.427 36.000 0.00 0.00 0.00 1.90
3213 3354 6.899089 TGAAAGTGCTCTATCCCATTATTGA 58.101 36.000 0.00 0.00 0.00 2.57
3214 3355 7.520798 TGAAAGTGCTCTATCCCATTATTGAT 58.479 34.615 0.00 0.00 0.00 2.57
3215 3356 8.659527 TGAAAGTGCTCTATCCCATTATTGATA 58.340 33.333 0.00 0.00 0.00 2.15
3216 3357 9.507329 GAAAGTGCTCTATCCCATTATTGATAA 57.493 33.333 0.00 0.00 0.00 1.75
3273 3414 6.100279 TCAGCACCCTGTTCAGATAGATAATT 59.900 38.462 1.00 0.00 40.09 1.40
3351 3492 5.106475 GCAACTTGGACGGTTCATTTGTATA 60.106 40.000 11.09 0.00 0.00 1.47
3457 3598 5.425217 ACCTTTTTCTGTTGGAATGAGGTTT 59.575 36.000 0.00 0.00 42.08 3.27
3671 3813 4.142447 GCTTTCTCATGCTTGACACATCAT 60.142 41.667 0.00 0.00 33.85 2.45
3674 3816 7.634671 TTTCTCATGCTTGACACATCATATT 57.365 32.000 0.00 0.00 33.85 1.28
3776 3920 3.406764 AGCATTGTGGTTCTCTGTCTTC 58.593 45.455 0.00 0.00 0.00 2.87
3871 4015 7.649533 TGAATAGATGCTGGTCATTTCAAAT 57.350 32.000 0.00 0.00 35.05 2.32
3896 4040 2.222227 AGGGCCAAAGAAATCCTGTC 57.778 50.000 6.18 0.00 0.00 3.51
3945 4089 2.603173 GCCTGTGAAGAAAAGTGAAGCG 60.603 50.000 0.00 0.00 0.00 4.68
4021 4165 8.353423 AGTTCCAATGTTTTGCACTAATCTAT 57.647 30.769 0.00 0.00 0.00 1.98
4029 4173 8.615878 TGTTTTGCACTAATCTATACAACTGT 57.384 30.769 0.00 0.00 0.00 3.55
4078 4222 8.625651 CATAACAGAGTAGAAGTATAGTGCACT 58.374 37.037 25.12 25.12 0.00 4.40
4134 4297 2.101575 GATGCGTCCGCGTAGTCA 59.898 61.111 4.92 0.00 45.51 3.41
4201 4364 0.560688 ACCTGTTTGGGGATGGTTGT 59.439 50.000 0.00 0.00 41.11 3.32
4209 4372 2.033448 GGATGGTTGTGGACGCCA 59.967 61.111 0.00 0.00 36.64 5.69
4440 4605 2.512286 GTGCGCTAGGAGCATGCA 60.512 61.111 21.98 0.00 46.96 3.96
4474 4639 3.786635 ACATATGACGTTTGAGGAGCTC 58.213 45.455 10.38 4.71 0.00 4.09
4483 4648 4.202223 ACGTTTGAGGAGCTCTAGACAAAA 60.202 41.667 14.64 3.89 0.00 2.44
4484 4649 4.750098 CGTTTGAGGAGCTCTAGACAAAAA 59.250 41.667 14.64 2.88 0.00 1.94
4506 4671 3.409026 AAAATCGGCTCTCACAGAAGT 57.591 42.857 0.00 0.00 0.00 3.01
4511 4676 1.532868 CGGCTCTCACAGAAGTTTTGG 59.467 52.381 0.00 0.00 0.00 3.28
4516 4681 5.221322 GGCTCTCACAGAAGTTTTGGAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
4592 4851 5.401550 TGAAAATTTGCATGCTACTAGTGC 58.598 37.500 20.33 7.95 39.26 4.40
4593 4852 5.048154 TGAAAATTTGCATGCTACTAGTGCA 60.048 36.000 20.33 18.15 46.15 4.57
4596 4855 2.299993 TGCATGCTACTAGTGCACTC 57.700 50.000 25.56 9.27 43.30 3.51
4597 4856 1.827344 TGCATGCTACTAGTGCACTCT 59.173 47.619 25.56 12.49 43.30 3.24
4598 4857 3.023832 TGCATGCTACTAGTGCACTCTA 58.976 45.455 25.56 12.99 43.30 2.43
4599 4858 3.067320 TGCATGCTACTAGTGCACTCTAG 59.933 47.826 25.56 22.14 43.30 2.43
4600 4859 3.637432 CATGCTACTAGTGCACTCTAGC 58.363 50.000 31.58 31.58 43.59 3.42
4601 4860 1.671328 TGCTACTAGTGCACTCTAGCG 59.329 52.381 31.73 19.45 40.50 4.26
4602 4861 1.671845 GCTACTAGTGCACTCTAGCGT 59.328 52.381 27.91 19.12 40.50 5.07
4603 4862 2.286536 GCTACTAGTGCACTCTAGCGTC 60.287 54.545 27.91 12.89 40.50 5.19
4604 4863 2.116827 ACTAGTGCACTCTAGCGTCT 57.883 50.000 25.56 0.00 40.50 4.18
4605 4864 2.438411 ACTAGTGCACTCTAGCGTCTT 58.562 47.619 25.56 0.00 40.50 3.01
4606 4865 2.162608 ACTAGTGCACTCTAGCGTCTTG 59.837 50.000 25.56 0.00 40.50 3.02
4607 4866 0.244994 AGTGCACTCTAGCGTCTTGG 59.755 55.000 15.25 0.00 37.31 3.61
4608 4867 0.243907 GTGCACTCTAGCGTCTTGGA 59.756 55.000 10.32 0.00 37.31 3.53
4609 4868 1.134965 GTGCACTCTAGCGTCTTGGAT 60.135 52.381 10.32 0.00 37.31 3.41
4610 4869 1.134995 TGCACTCTAGCGTCTTGGATG 60.135 52.381 0.00 0.00 37.31 3.51
4611 4870 1.565305 CACTCTAGCGTCTTGGATGC 58.435 55.000 3.81 3.81 44.07 3.91
4612 4871 0.461961 ACTCTAGCGTCTTGGATGCC 59.538 55.000 7.95 0.00 44.75 4.40
4613 4872 0.461548 CTCTAGCGTCTTGGATGCCA 59.538 55.000 7.95 0.00 44.75 4.92
4614 4873 0.901827 TCTAGCGTCTTGGATGCCAA 59.098 50.000 7.95 0.00 44.75 4.52
4615 4874 1.486310 TCTAGCGTCTTGGATGCCAAT 59.514 47.619 7.95 0.00 44.75 3.16
4616 4875 2.092968 TCTAGCGTCTTGGATGCCAATT 60.093 45.455 7.95 0.00 44.75 2.32
4617 4876 1.549203 AGCGTCTTGGATGCCAATTT 58.451 45.000 7.95 0.00 44.75 1.82
4618 4877 1.895131 AGCGTCTTGGATGCCAATTTT 59.105 42.857 7.95 0.00 44.75 1.82
4619 4878 2.299867 AGCGTCTTGGATGCCAATTTTT 59.700 40.909 7.95 0.00 44.75 1.94
4649 4908 8.076178 AGAGTTTTTGGAATTTACTGTTCATCG 58.924 33.333 0.00 0.00 0.00 3.84
4650 4909 7.145323 AGTTTTTGGAATTTACTGTTCATCGG 58.855 34.615 0.00 0.00 0.00 4.18
4651 4910 5.637006 TTTGGAATTTACTGTTCATCGGG 57.363 39.130 0.00 0.00 0.00 5.14
4652 4911 4.561500 TGGAATTTACTGTTCATCGGGA 57.438 40.909 0.00 0.00 0.00 5.14
4653 4912 4.513442 TGGAATTTACTGTTCATCGGGAG 58.487 43.478 0.00 0.00 0.00 4.30
4654 4913 4.019681 TGGAATTTACTGTTCATCGGGAGT 60.020 41.667 0.00 0.00 0.00 3.85
4655 4914 4.941873 GGAATTTACTGTTCATCGGGAGTT 59.058 41.667 0.00 0.00 0.00 3.01
4656 4915 5.163754 GGAATTTACTGTTCATCGGGAGTTG 60.164 44.000 0.00 0.00 0.00 3.16
4657 4916 4.610605 TTTACTGTTCATCGGGAGTTGA 57.389 40.909 0.00 0.00 36.83 3.18
4658 4917 4.819105 TTACTGTTCATCGGGAGTTGAT 57.181 40.909 0.00 0.00 38.28 2.57
4659 4918 2.977914 ACTGTTCATCGGGAGTTGATG 58.022 47.619 0.00 0.00 43.62 3.07
4783 5042 9.871175 TGTATATATGCTATTAATCGGGTAGGA 57.129 33.333 2.37 0.00 0.00 2.94
4786 5045 4.202245 TGCTATTAATCGGGTAGGATGC 57.798 45.455 0.00 0.00 0.00 3.91
4787 5046 3.580895 TGCTATTAATCGGGTAGGATGCA 59.419 43.478 0.00 0.00 0.00 3.96
4788 5047 4.225042 TGCTATTAATCGGGTAGGATGCAT 59.775 41.667 0.00 0.00 0.00 3.96
4789 5048 4.811557 GCTATTAATCGGGTAGGATGCATC 59.188 45.833 18.81 18.81 0.00 3.91
4790 5049 5.395768 GCTATTAATCGGGTAGGATGCATCT 60.396 44.000 25.28 14.04 0.00 2.90
4791 5050 6.183360 GCTATTAATCGGGTAGGATGCATCTA 60.183 42.308 25.28 13.09 0.00 1.98
4792 5051 6.620877 ATTAATCGGGTAGGATGCATCTAA 57.379 37.500 25.28 12.99 0.00 2.10
4793 5052 6.620877 TTAATCGGGTAGGATGCATCTAAT 57.379 37.500 25.28 14.33 0.00 1.73
4794 5053 5.505181 AATCGGGTAGGATGCATCTAATT 57.495 39.130 25.28 11.68 0.00 1.40
4795 5054 4.974645 TCGGGTAGGATGCATCTAATTT 57.025 40.909 25.28 9.44 0.00 1.82
4796 5055 6.620877 ATCGGGTAGGATGCATCTAATTTA 57.379 37.500 25.28 8.55 0.00 1.40
4797 5056 6.037786 TCGGGTAGGATGCATCTAATTTAG 57.962 41.667 25.28 12.12 0.00 1.85
4798 5057 4.631813 CGGGTAGGATGCATCTAATTTAGC 59.368 45.833 25.28 17.19 0.00 3.09
4910 8473 1.131303 TCCCGATGGTGGAACAAGGT 61.131 55.000 0.00 0.00 44.16 3.50
4962 8529 2.575532 TGGCAAAGTTCTCACAAGGAG 58.424 47.619 0.00 0.00 45.49 3.69
4963 8530 2.092429 TGGCAAAGTTCTCACAAGGAGT 60.092 45.455 0.00 0.00 44.40 3.85
4964 8531 2.550180 GGCAAAGTTCTCACAAGGAGTC 59.450 50.000 0.00 0.00 44.40 3.36
4965 8532 3.206150 GCAAAGTTCTCACAAGGAGTCA 58.794 45.455 0.00 0.00 44.40 3.41
4966 8533 3.627577 GCAAAGTTCTCACAAGGAGTCAA 59.372 43.478 0.00 0.00 44.40 3.18
4967 8534 4.260948 GCAAAGTTCTCACAAGGAGTCAAG 60.261 45.833 0.00 0.00 44.40 3.02
4968 8535 3.760580 AGTTCTCACAAGGAGTCAAGG 57.239 47.619 0.00 0.00 44.40 3.61
4969 8536 3.309296 AGTTCTCACAAGGAGTCAAGGA 58.691 45.455 0.00 0.00 44.40 3.36
4985 8552 3.455910 TCAAGGATATGTGAACCCTGGAG 59.544 47.826 0.00 0.00 0.00 3.86
5030 8597 5.848286 TCCAGGATTGCATAGGATGTAAT 57.152 39.130 2.88 2.88 46.09 1.89
5033 8600 7.754624 TCCAGGATTGCATAGGATGTAATTTA 58.245 34.615 4.58 0.00 43.99 1.40
5053 8621 6.414408 TTTAAAACCATATTTTGCATGCCG 57.586 33.333 16.68 0.00 0.00 5.69
5152 8736 2.555664 ACTTGACAGGTGAGATGGGAT 58.444 47.619 0.00 0.00 0.00 3.85
5173 8757 0.249073 ATGATGTAGAGTGCCGTCGC 60.249 55.000 0.00 0.00 0.00 5.19
5175 8759 2.005960 GATGTAGAGTGCCGTCGCCT 62.006 60.000 0.00 0.00 0.00 5.52
5287 8871 2.092375 CCTCCCCCAAGTTAATCCAGAC 60.092 54.545 0.00 0.00 0.00 3.51
5493 9078 6.166279 TGGTACTGTTAATTCAGCTTCTGAG 58.834 40.000 0.00 0.00 41.75 3.35
5560 9145 4.769688 TCGGAATTGCTCTATCAACATGT 58.230 39.130 0.00 0.00 0.00 3.21
5689 9274 3.781079 TGCAAGGTCAAGAAGTGTTTG 57.219 42.857 0.00 0.00 0.00 2.93
5770 9355 5.220710 ACCTGATGGCAACTATACATCTC 57.779 43.478 0.00 0.00 41.12 2.75
5792 9377 6.710295 TCTCGTGCAACATATAAATGGCTTAT 59.290 34.615 0.00 0.00 37.43 1.73
5961 9546 8.758633 ATATTAGACATGTTACTATCAACGCC 57.241 34.615 0.00 0.00 0.00 5.68
6008 9593 1.115467 ACATTACCTCTCTGGCCTCG 58.885 55.000 3.32 0.00 40.22 4.63
6028 9613 2.735823 GTCTTGTTTCAGGCAAAGCAG 58.264 47.619 0.00 0.00 0.00 4.24
6059 9644 3.181480 TGTGCTGGAACTAAAAAGTTGCC 60.181 43.478 7.22 4.29 39.00 4.52
6067 9652 3.081804 ACTAAAAAGTTGCCCTCCATCG 58.918 45.455 0.00 0.00 0.00 3.84
6196 9781 3.981211 AGCAGTGCGAATTGTGATTTTT 58.019 36.364 10.00 0.00 0.00 1.94
6309 9894 7.167924 TCTTGATGCAATTGCTTATTAACCA 57.832 32.000 29.37 14.03 42.66 3.67
6313 9898 8.613060 TGATGCAATTGCTTATTAACCAAAAA 57.387 26.923 29.37 5.91 42.66 1.94
6572 10158 8.464770 TGCTTATCAAATTTGTAATGCACTTC 57.535 30.769 17.47 0.38 0.00 3.01
6665 10251 3.981211 AGTGTGTTTTTAAGCTGCATGG 58.019 40.909 1.02 0.00 0.00 3.66
6710 10296 8.197988 ACTAGCACGATTTAATTTCGAAGAAT 57.802 30.769 13.41 0.00 45.90 2.40
6757 10347 9.953565 TTAGCACCATTTATTACAAAGTACTCT 57.046 29.630 0.00 0.00 0.00 3.24
7198 10788 2.805845 GCCATAAGCAGCAAGTTCATG 58.194 47.619 0.00 0.00 42.97 3.07
7199 10789 2.480759 GCCATAAGCAGCAAGTTCATGG 60.481 50.000 0.00 0.00 42.97 3.66
7200 10790 2.480759 CCATAAGCAGCAAGTTCATGGC 60.481 50.000 0.00 0.00 0.00 4.40
7201 10791 2.205022 TAAGCAGCAAGTTCATGGCT 57.795 45.000 0.00 0.00 38.70 4.75
7202 10792 2.205022 AAGCAGCAAGTTCATGGCTA 57.795 45.000 0.00 0.00 35.82 3.93
7203 10793 2.205022 AGCAGCAAGTTCATGGCTAA 57.795 45.000 0.00 0.00 35.82 3.09
7204 10794 1.815003 AGCAGCAAGTTCATGGCTAAC 59.185 47.619 0.00 0.00 35.82 2.34
7205 10795 1.135286 GCAGCAAGTTCATGGCTAACC 60.135 52.381 0.00 0.00 35.82 2.85
7206 10796 2.440409 CAGCAAGTTCATGGCTAACCT 58.560 47.619 0.00 0.00 35.82 3.50
7207 10797 2.821969 CAGCAAGTTCATGGCTAACCTT 59.178 45.455 0.00 0.00 35.82 3.50
7208 10798 4.009675 CAGCAAGTTCATGGCTAACCTTA 58.990 43.478 0.00 0.00 35.82 2.69
7209 10799 4.641989 CAGCAAGTTCATGGCTAACCTTAT 59.358 41.667 0.00 0.00 35.82 1.73
7210 10800 5.126061 CAGCAAGTTCATGGCTAACCTTATT 59.874 40.000 0.00 0.00 35.82 1.40
7211 10801 5.358160 AGCAAGTTCATGGCTAACCTTATTC 59.642 40.000 0.00 0.00 35.82 1.75
7212 10802 5.358160 GCAAGTTCATGGCTAACCTTATTCT 59.642 40.000 0.00 0.00 36.63 2.40
7213 10803 6.678900 GCAAGTTCATGGCTAACCTTATTCTG 60.679 42.308 0.00 0.00 36.63 3.02
7214 10804 4.884164 AGTTCATGGCTAACCTTATTCTGC 59.116 41.667 0.00 0.00 36.63 4.26
7215 10805 3.466836 TCATGGCTAACCTTATTCTGCG 58.533 45.455 0.00 0.00 36.63 5.18
7216 10806 3.133901 TCATGGCTAACCTTATTCTGCGA 59.866 43.478 0.00 0.00 36.63 5.10
7217 10807 3.620427 TGGCTAACCTTATTCTGCGAA 57.380 42.857 0.00 0.00 36.63 4.70
7218 10808 3.267483 TGGCTAACCTTATTCTGCGAAC 58.733 45.455 0.00 0.00 36.63 3.95
7219 10809 2.284417 GGCTAACCTTATTCTGCGAACG 59.716 50.000 0.00 0.00 0.00 3.95
7220 10810 3.184541 GCTAACCTTATTCTGCGAACGA 58.815 45.455 0.00 0.00 0.00 3.85
7221 10811 3.000022 GCTAACCTTATTCTGCGAACGAC 60.000 47.826 0.00 0.00 0.00 4.34
7222 10812 1.625616 ACCTTATTCTGCGAACGACG 58.374 50.000 0.00 0.00 45.66 5.12
7223 10813 1.200716 ACCTTATTCTGCGAACGACGA 59.799 47.619 0.00 0.00 45.77 4.20
7224 10814 1.582502 CCTTATTCTGCGAACGACGAC 59.417 52.381 0.00 0.00 45.77 4.34
7225 10815 2.247637 CTTATTCTGCGAACGACGACA 58.752 47.619 0.00 7.14 45.77 4.35
7226 10816 2.334971 TATTCTGCGAACGACGACAA 57.665 45.000 0.00 1.11 45.77 3.18
7227 10817 1.493772 ATTCTGCGAACGACGACAAA 58.506 45.000 0.00 2.22 45.77 2.83
7228 10818 1.279152 TTCTGCGAACGACGACAAAA 58.721 45.000 0.00 0.37 45.77 2.44
7229 10819 1.279152 TCTGCGAACGACGACAAAAA 58.721 45.000 0.00 0.00 45.77 1.94
7230 10820 1.256895 TCTGCGAACGACGACAAAAAG 59.743 47.619 0.00 0.00 45.77 2.27
7231 10821 1.000884 TGCGAACGACGACAAAAAGT 58.999 45.000 0.00 0.00 45.77 2.66
7232 10822 2.191802 TGCGAACGACGACAAAAAGTA 58.808 42.857 0.00 0.00 45.77 2.24
7233 10823 2.602211 TGCGAACGACGACAAAAAGTAA 59.398 40.909 0.00 0.00 45.77 2.24
7234 10824 3.061831 TGCGAACGACGACAAAAAGTAAA 59.938 39.130 0.00 0.00 45.77 2.01
7235 10825 4.021169 GCGAACGACGACAAAAAGTAAAA 58.979 39.130 0.00 0.00 45.77 1.52
7236 10826 4.141861 GCGAACGACGACAAAAAGTAAAAG 59.858 41.667 0.00 0.00 45.77 2.27
7237 10827 5.483213 CGAACGACGACAAAAAGTAAAAGA 58.517 37.500 0.00 0.00 45.77 2.52
7238 10828 5.953205 CGAACGACGACAAAAAGTAAAAGAA 59.047 36.000 0.00 0.00 45.77 2.52
7239 10829 6.462323 CGAACGACGACAAAAAGTAAAAGAAA 59.538 34.615 0.00 0.00 45.77 2.52
7240 10830 7.163032 CGAACGACGACAAAAAGTAAAAGAAAT 59.837 33.333 0.00 0.00 45.77 2.17
7241 10831 7.887752 ACGACGACAAAAAGTAAAAGAAATC 57.112 32.000 0.00 0.00 0.00 2.17
7242 10832 7.691158 ACGACGACAAAAAGTAAAAGAAATCT 58.309 30.769 0.00 0.00 0.00 2.40
7243 10833 8.179615 ACGACGACAAAAAGTAAAAGAAATCTT 58.820 29.630 0.00 0.00 37.91 2.40
7258 10848 9.799106 AAAAGAAATCTTTCTATCCTCAGTTGA 57.201 29.630 8.74 0.00 46.22 3.18
7259 10849 9.447157 AAAGAAATCTTTCTATCCTCAGTTGAG 57.553 33.333 5.65 2.09 46.22 3.02
7260 10850 7.784633 GAAATCTTTCTATCCTCAGTTGAGG 57.215 40.000 19.91 19.91 46.09 3.86
7261 10851 6.259829 GAAATCTTTCTATCCTCAGTTGAGGC 59.740 42.308 20.91 1.46 45.34 4.70
7262 10852 8.594516 GAAATCTTTCTATCCTCAGTTGAGGCC 61.595 44.444 20.91 0.00 45.34 5.19
7268 10858 3.336122 CTCAGTTGAGGCCAAGCTT 57.664 52.632 5.01 0.00 38.48 3.74
7269 10859 1.613836 CTCAGTTGAGGCCAAGCTTT 58.386 50.000 5.01 0.00 38.48 3.51
7270 10860 1.959282 CTCAGTTGAGGCCAAGCTTTT 59.041 47.619 5.01 0.00 38.48 2.27
7271 10861 3.149196 CTCAGTTGAGGCCAAGCTTTTA 58.851 45.455 5.01 0.00 38.48 1.52
7272 10862 3.561143 TCAGTTGAGGCCAAGCTTTTAA 58.439 40.909 5.01 0.00 32.06 1.52
7273 10863 4.151883 TCAGTTGAGGCCAAGCTTTTAAT 58.848 39.130 5.01 0.00 32.06 1.40
7274 10864 4.218417 TCAGTTGAGGCCAAGCTTTTAATC 59.782 41.667 5.01 0.00 32.06 1.75
7275 10865 4.219288 CAGTTGAGGCCAAGCTTTTAATCT 59.781 41.667 5.01 0.00 32.06 2.40
7276 10866 4.835056 AGTTGAGGCCAAGCTTTTAATCTT 59.165 37.500 5.01 0.00 32.06 2.40
7277 10867 5.047731 AGTTGAGGCCAAGCTTTTAATCTTC 60.048 40.000 5.01 0.00 32.06 2.87
7278 10868 4.666512 TGAGGCCAAGCTTTTAATCTTCT 58.333 39.130 5.01 0.00 0.00 2.85
7279 10869 4.460382 TGAGGCCAAGCTTTTAATCTTCTG 59.540 41.667 5.01 0.00 0.00 3.02
7280 10870 3.766051 AGGCCAAGCTTTTAATCTTCTGG 59.234 43.478 5.01 0.00 0.00 3.86
7281 10871 3.763897 GGCCAAGCTTTTAATCTTCTGGA 59.236 43.478 0.00 0.00 0.00 3.86
7282 10872 4.403752 GGCCAAGCTTTTAATCTTCTGGAT 59.596 41.667 0.00 0.00 35.97 3.41
7283 10873 5.451103 GGCCAAGCTTTTAATCTTCTGGATC 60.451 44.000 0.00 0.00 32.76 3.36
7284 10874 5.126061 GCCAAGCTTTTAATCTTCTGGATCA 59.874 40.000 0.00 0.00 32.76 2.92
7285 10875 6.558909 CCAAGCTTTTAATCTTCTGGATCAC 58.441 40.000 0.00 0.00 32.76 3.06
7286 10876 6.253746 CAAGCTTTTAATCTTCTGGATCACG 58.746 40.000 0.00 0.00 32.76 4.35
7287 10877 5.734720 AGCTTTTAATCTTCTGGATCACGA 58.265 37.500 0.00 0.00 32.76 4.35
7288 10878 6.173339 AGCTTTTAATCTTCTGGATCACGAA 58.827 36.000 0.00 0.00 32.76 3.85
7289 10879 6.314896 AGCTTTTAATCTTCTGGATCACGAAG 59.685 38.462 13.96 13.96 38.34 3.79
7290 10880 6.422776 TTTTAATCTTCTGGATCACGAAGC 57.577 37.500 14.88 0.00 37.22 3.86
7291 10881 2.215907 ATCTTCTGGATCACGAAGCG 57.784 50.000 14.88 0.00 37.22 4.68
7292 10882 1.173913 TCTTCTGGATCACGAAGCGA 58.826 50.000 14.88 1.51 37.22 4.93
7293 10883 1.751351 TCTTCTGGATCACGAAGCGAT 59.249 47.619 14.88 0.00 37.22 4.58
7294 10884 1.857217 CTTCTGGATCACGAAGCGATG 59.143 52.381 9.43 0.00 31.34 3.84
7295 10885 0.817654 TCTGGATCACGAAGCGATGT 59.182 50.000 0.00 0.00 24.82 3.06
7296 10886 2.021457 TCTGGATCACGAAGCGATGTA 58.979 47.619 0.00 0.00 24.82 2.29
7297 10887 2.120232 CTGGATCACGAAGCGATGTAC 58.880 52.381 0.00 0.00 24.82 2.90
7298 10888 1.749063 TGGATCACGAAGCGATGTACT 59.251 47.619 0.00 0.00 24.82 2.73
7299 10889 2.120232 GGATCACGAAGCGATGTACTG 58.880 52.381 0.00 0.00 24.82 2.74
7300 10890 2.223502 GGATCACGAAGCGATGTACTGA 60.224 50.000 0.00 0.00 24.82 3.41
7301 10891 3.551046 GGATCACGAAGCGATGTACTGAT 60.551 47.826 0.00 0.00 24.82 2.90
7302 10892 3.066369 TCACGAAGCGATGTACTGATC 57.934 47.619 0.00 0.00 0.00 2.92
7303 10893 2.683362 TCACGAAGCGATGTACTGATCT 59.317 45.455 0.00 0.00 0.00 2.75
7304 10894 3.875134 TCACGAAGCGATGTACTGATCTA 59.125 43.478 0.00 0.00 0.00 1.98
7305 10895 4.515567 TCACGAAGCGATGTACTGATCTAT 59.484 41.667 0.00 0.00 0.00 1.98
7306 10896 5.008712 TCACGAAGCGATGTACTGATCTATT 59.991 40.000 0.00 0.00 0.00 1.73
7307 10897 6.204108 TCACGAAGCGATGTACTGATCTATTA 59.796 38.462 0.00 0.00 0.00 0.98
7308 10898 7.024171 CACGAAGCGATGTACTGATCTATTAT 58.976 38.462 0.00 0.00 0.00 1.28
7309 10899 7.217258 CACGAAGCGATGTACTGATCTATTATC 59.783 40.741 0.00 0.00 0.00 1.75
7310 10900 6.409473 CGAAGCGATGTACTGATCTATTATCG 59.591 42.308 12.33 12.33 38.98 2.92
7311 10901 6.125327 AGCGATGTACTGATCTATTATCGG 57.875 41.667 15.92 0.00 37.14 4.18
7312 10902 5.880887 AGCGATGTACTGATCTATTATCGGA 59.119 40.000 15.92 0.00 37.14 4.55
7313 10903 6.374613 AGCGATGTACTGATCTATTATCGGAA 59.625 38.462 15.92 0.00 37.14 4.30
7314 10904 7.067615 AGCGATGTACTGATCTATTATCGGAAT 59.932 37.037 15.92 0.00 37.14 3.01
7315 10905 7.702772 GCGATGTACTGATCTATTATCGGAATT 59.297 37.037 15.92 0.00 37.14 2.17
7316 10906 9.574458 CGATGTACTGATCTATTATCGGAATTT 57.426 33.333 0.96 0.00 34.13 1.82
7318 10908 8.534333 TGTACTGATCTATTATCGGAATTTGC 57.466 34.615 0.96 0.00 0.00 3.68
7319 10909 8.367911 TGTACTGATCTATTATCGGAATTTGCT 58.632 33.333 0.96 0.00 0.00 3.91
7320 10910 9.856488 GTACTGATCTATTATCGGAATTTGCTA 57.144 33.333 0.96 0.00 0.00 3.49
7322 10912 9.376075 ACTGATCTATTATCGGAATTTGCTATG 57.624 33.333 0.96 0.00 0.00 2.23
7323 10913 9.591792 CTGATCTATTATCGGAATTTGCTATGA 57.408 33.333 0.00 0.00 0.00 2.15
7327 10917 9.591792 TCTATTATCGGAATTTGCTATGATCAG 57.408 33.333 0.09 0.00 0.00 2.90
7328 10918 6.486253 TTATCGGAATTTGCTATGATCAGC 57.514 37.500 0.09 0.09 42.15 4.26
7329 10919 2.802247 TCGGAATTTGCTATGATCAGCG 59.198 45.455 0.09 0.00 44.88 5.18
7330 10920 2.802247 CGGAATTTGCTATGATCAGCGA 59.198 45.455 0.09 0.00 44.88 4.93
7331 10921 3.363378 CGGAATTTGCTATGATCAGCGAC 60.363 47.826 0.09 0.00 44.88 5.19
7332 10922 3.561310 GGAATTTGCTATGATCAGCGACA 59.439 43.478 0.09 0.00 44.88 4.35
7333 10923 4.521943 GAATTTGCTATGATCAGCGACAC 58.478 43.478 0.09 0.00 44.88 3.67
7334 10924 2.967599 TTGCTATGATCAGCGACACT 57.032 45.000 0.09 0.00 44.88 3.55
7336 10926 0.857935 GCTATGATCAGCGACACTGC 59.142 55.000 0.09 0.00 46.76 4.40
7337 10927 1.495878 CTATGATCAGCGACACTGCC 58.504 55.000 0.09 0.00 46.76 4.85
7338 10928 1.068281 CTATGATCAGCGACACTGCCT 59.932 52.381 0.09 0.00 46.76 4.75
7339 10929 0.179089 ATGATCAGCGACACTGCCTC 60.179 55.000 0.09 0.00 46.76 4.70
7340 10930 1.216444 GATCAGCGACACTGCCTCA 59.784 57.895 0.00 0.00 46.76 3.86
7341 10931 0.805322 GATCAGCGACACTGCCTCAG 60.805 60.000 0.00 0.00 46.76 3.35
7342 10932 1.253593 ATCAGCGACACTGCCTCAGA 61.254 55.000 0.29 0.00 46.76 3.27
7343 10933 1.005748 CAGCGACACTGCCTCAGAA 60.006 57.895 0.29 0.00 40.19 3.02
7344 10934 0.601046 CAGCGACACTGCCTCAGAAA 60.601 55.000 0.29 0.00 40.19 2.52
7345 10935 0.322975 AGCGACACTGCCTCAGAAAT 59.677 50.000 0.29 0.00 35.18 2.17
7346 10936 1.550524 AGCGACACTGCCTCAGAAATA 59.449 47.619 0.29 0.00 35.18 1.40
7347 10937 2.169352 AGCGACACTGCCTCAGAAATAT 59.831 45.455 0.29 0.00 35.18 1.28
7348 10938 2.541762 GCGACACTGCCTCAGAAATATC 59.458 50.000 0.29 0.00 35.18 1.63
7349 10939 3.739519 GCGACACTGCCTCAGAAATATCT 60.740 47.826 0.29 0.00 35.18 1.98
7350 10940 4.499865 GCGACACTGCCTCAGAAATATCTA 60.500 45.833 0.29 0.00 35.18 1.98
7351 10941 5.218885 CGACACTGCCTCAGAAATATCTAG 58.781 45.833 0.29 0.00 35.18 2.43
7352 10942 5.221145 CGACACTGCCTCAGAAATATCTAGT 60.221 44.000 0.29 0.00 35.18 2.57
7353 10943 6.552445 ACACTGCCTCAGAAATATCTAGTT 57.448 37.500 0.29 0.00 35.18 2.24
7354 10944 6.578023 ACACTGCCTCAGAAATATCTAGTTC 58.422 40.000 0.29 0.00 35.18 3.01
7355 10945 6.382570 ACACTGCCTCAGAAATATCTAGTTCT 59.617 38.462 0.29 0.00 40.79 3.01
7356 10946 7.561722 ACACTGCCTCAGAAATATCTAGTTCTA 59.438 37.037 0.29 0.00 38.42 2.10
7357 10947 7.865385 CACTGCCTCAGAAATATCTAGTTCTAC 59.135 40.741 0.29 0.00 38.42 2.59
7358 10948 7.014808 ACTGCCTCAGAAATATCTAGTTCTACC 59.985 40.741 0.29 0.00 38.42 3.18
7359 10949 6.839134 TGCCTCAGAAATATCTAGTTCTACCA 59.161 38.462 0.10 0.00 38.42 3.25
7360 10950 7.344612 TGCCTCAGAAATATCTAGTTCTACCAA 59.655 37.037 0.10 0.00 38.42 3.67
7361 10951 8.204836 GCCTCAGAAATATCTAGTTCTACCAAA 58.795 37.037 0.10 0.00 38.42 3.28
7375 10965 3.818586 CCAAAATTGGCAGCATCGT 57.181 47.368 0.00 0.00 42.21 3.73
7376 10966 1.632422 CCAAAATTGGCAGCATCGTC 58.368 50.000 0.00 0.00 42.21 4.20
7377 10967 1.632422 CAAAATTGGCAGCATCGTCC 58.368 50.000 0.00 0.00 0.00 4.79
7378 10968 0.171007 AAAATTGGCAGCATCGTCCG 59.829 50.000 0.00 0.00 0.00 4.79
7379 10969 1.656818 AAATTGGCAGCATCGTCCGG 61.657 55.000 0.00 0.00 0.00 5.14
7380 10970 2.819984 AATTGGCAGCATCGTCCGGT 62.820 55.000 0.00 0.00 0.00 5.28
7381 10971 4.758251 TGGCAGCATCGTCCGGTG 62.758 66.667 0.00 0.00 34.99 4.94
7383 10973 4.451150 GCAGCATCGTCCGGTGGA 62.451 66.667 0.00 0.00 32.51 4.02
7384 10974 2.202797 CAGCATCGTCCGGTGGAG 60.203 66.667 0.00 0.00 29.39 3.86
7385 10975 3.461773 AGCATCGTCCGGTGGAGG 61.462 66.667 0.00 2.81 38.76 4.30
7386 10976 4.530857 GCATCGTCCGGTGGAGGG 62.531 72.222 0.00 0.00 38.06 4.30
7387 10977 4.530857 CATCGTCCGGTGGAGGGC 62.531 72.222 0.00 0.00 38.06 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 0.969409 CGTCCCTAACCTCTTCCGGT 60.969 60.000 0.00 0.00 39.48 5.28
100 101 2.981909 TTGTCGCTCGTCGTCCCT 60.982 61.111 0.00 0.00 39.67 4.20
129 130 0.893727 GTTGCCGGTGGGAGACAAAT 60.894 55.000 1.90 0.00 34.06 2.32
161 162 2.298729 CCTCCCGAAAAAGAATTTGGCA 59.701 45.455 0.00 0.00 39.02 4.92
228 229 0.827507 GCATTGTGTTCCACCAGGGT 60.828 55.000 0.00 0.00 38.11 4.34
243 244 4.740822 GCCACCCCTGGTCGCATT 62.741 66.667 0.00 0.00 39.55 3.56
304 309 1.221021 CTTTCTCTACCCGCCCCAC 59.779 63.158 0.00 0.00 0.00 4.61
319 324 3.580895 GAGACAGACCCCTCTTTCTCTTT 59.419 47.826 6.63 0.00 43.15 2.52
375 380 2.026590 GAACGGACACACGGACGT 59.973 61.111 0.00 0.00 41.88 4.34
378 383 2.332514 GTCGAACGGACACACGGA 59.667 61.111 0.00 0.00 45.36 4.69
394 410 1.202770 AGTTTAGGCTGAGTTTGCGGT 60.203 47.619 0.00 0.00 0.00 5.68
409 425 6.703319 TCGACCTATTTCATGTCCAAGTTTA 58.297 36.000 0.00 0.00 0.00 2.01
417 433 3.001330 CCGCTTTCGACCTATTTCATGTC 59.999 47.826 0.00 0.00 38.10 3.06
421 437 2.028839 TGTCCGCTTTCGACCTATTTCA 60.029 45.455 0.00 0.00 38.10 2.69
427 443 0.391597 TTTCTGTCCGCTTTCGACCT 59.608 50.000 0.00 0.00 38.10 3.85
492 508 5.650543 GCATTCATTTGGGAGTAAACGAAT 58.349 37.500 0.00 0.00 34.06 3.34
494 510 3.126171 CGCATTCATTTGGGAGTAAACGA 59.874 43.478 0.00 0.00 0.00 3.85
502 518 1.029408 CCGTCCGCATTCATTTGGGA 61.029 55.000 0.00 0.00 0.00 4.37
572 616 1.469308 GAAGAGGACGAAAGAGAGCGA 59.531 52.381 0.00 0.00 0.00 4.93
592 636 1.500844 CTGCGCTGCTGGAAAAGAG 59.499 57.895 9.73 0.00 0.00 2.85
593 637 2.620112 GCTGCGCTGCTGGAAAAGA 61.620 57.895 29.28 0.00 0.00 2.52
594 638 2.126580 GCTGCGCTGCTGGAAAAG 60.127 61.111 29.28 6.62 0.00 2.27
625 669 1.466697 CGAGGACGAAGAGAACTGCTC 60.467 57.143 0.00 0.00 42.04 4.26
627 671 0.522180 TCGAGGACGAAGAGAACTGC 59.478 55.000 0.00 0.00 45.74 4.40
698 742 4.340381 GCTACGGACTAGGAGTTGGATAAA 59.660 45.833 0.00 0.00 0.00 1.40
701 745 2.308690 GCTACGGACTAGGAGTTGGAT 58.691 52.381 0.00 0.00 0.00 3.41
702 746 1.684248 GGCTACGGACTAGGAGTTGGA 60.684 57.143 0.00 0.00 0.00 3.53
703 747 0.745468 GGCTACGGACTAGGAGTTGG 59.255 60.000 0.00 0.00 0.00 3.77
705 749 0.630134 AGGGCTACGGACTAGGAGTT 59.370 55.000 0.00 0.00 0.00 3.01
746 809 1.904378 GCTAGGGGGAGCTCGTAGG 60.904 68.421 7.83 0.00 39.50 3.18
747 810 3.766432 GCTAGGGGGAGCTCGTAG 58.234 66.667 7.83 7.10 39.50 3.51
944 1008 2.805353 CACGGAGCAACGGTCGAG 60.805 66.667 5.09 0.00 38.39 4.04
945 1009 3.547249 GACACGGAGCAACGGTCGA 62.547 63.158 5.09 0.00 38.39 4.20
946 1010 3.103911 GACACGGAGCAACGGTCG 61.104 66.667 5.09 0.00 38.39 4.79
1071 1149 1.446792 CAGCTCTAGGCACACCGTG 60.447 63.158 0.00 0.00 44.79 4.94
1221 1308 2.094026 CACCTGGAGATTGACATCGACA 60.094 50.000 0.00 0.00 34.17 4.35
1338 1434 1.211190 GTAAACCTCGTCCGTCGCT 59.789 57.895 0.00 0.00 39.67 4.93
1372 1468 0.109412 GGTACCTCGTTGTCGACCAG 60.109 60.000 14.12 4.35 41.35 4.00
1393 1489 5.860941 ATTCAGATCAGTGGTAGTGGTAG 57.139 43.478 0.00 0.00 0.00 3.18
1468 1572 3.250323 CATCACCGACGCGCAGAG 61.250 66.667 5.73 0.00 0.00 3.35
1865 1970 5.683859 CAATAATAAGCCAGTGAATCGCTC 58.316 41.667 0.00 0.00 30.92 5.03
1880 1985 9.494271 CTGAACCTGAGCTATAAGCAATAATAA 57.506 33.333 1.22 0.00 45.56 1.40
1881 1986 7.604164 GCTGAACCTGAGCTATAAGCAATAATA 59.396 37.037 1.22 0.00 45.56 0.98
1882 1987 6.429385 GCTGAACCTGAGCTATAAGCAATAAT 59.571 38.462 1.22 0.00 45.56 1.28
1948 2081 6.607198 TCTCTGTAACACCTCATGATATGTCA 59.393 38.462 11.31 0.00 39.04 3.58
2038 2175 2.627699 GCCAAAAGACCACCTCATGAAA 59.372 45.455 0.00 0.00 0.00 2.69
2077 2214 6.094881 CCAATGGTCTTCGTATTAACAATGGT 59.905 38.462 0.00 0.00 0.00 3.55
2214 2352 4.662145 AGACAAGCTTCTTTTTGTTGACG 58.338 39.130 0.00 0.00 37.63 4.35
2220 2358 3.005155 CCCCAGAGACAAGCTTCTTTTTG 59.995 47.826 0.00 0.00 0.00 2.44
2362 2501 2.436646 CTCGGCGCACTCCCAATT 60.437 61.111 10.83 0.00 0.00 2.32
2402 2541 4.141824 TGGTTAAAAAGTGCAGGAAAAGGG 60.142 41.667 0.00 0.00 0.00 3.95
2429 2568 3.144506 ACCGAGACTACGAAGACTTGAA 58.855 45.455 0.00 0.00 32.47 2.69
2439 2578 2.190981 GGCAACATTACCGAGACTACG 58.809 52.381 0.00 0.00 0.00 3.51
2604 2743 6.530181 CACTATAACTGTGCATTAGTCGAACA 59.470 38.462 6.99 0.00 0.00 3.18
2608 2747 6.530181 TGAACACTATAACTGTGCATTAGTCG 59.470 38.462 6.99 1.01 38.86 4.18
2633 2772 5.218139 CGACGTGTCTAACTTTTTCTAGGT 58.782 41.667 0.00 0.00 0.00 3.08
2770 2909 8.818057 CCGACAAGTATAATTTGTTCTAGGAAG 58.182 37.037 5.61 0.00 38.78 3.46
2845 2984 7.011016 TCGTACGGTATTAAGAACGAGTATTCA 59.989 37.037 15.47 0.00 34.74 2.57
2913 3053 4.986622 ACAAGAAGCAACTCAAAACTGTC 58.013 39.130 0.00 0.00 0.00 3.51
3034 3174 6.041409 TGCCACAATTAAATGACCTTTGAGAA 59.959 34.615 0.00 0.00 0.00 2.87
3035 3175 5.538053 TGCCACAATTAAATGACCTTTGAGA 59.462 36.000 0.00 0.00 0.00 3.27
3099 3239 9.204337 TCAATTCCCAATATCAAATTCAGACAT 57.796 29.630 0.00 0.00 0.00 3.06
3175 3316 6.643770 AGAGCACTTTCAAAATAGTTGCATTG 59.356 34.615 0.00 0.00 0.00 2.82
3179 3320 6.969473 GGATAGAGCACTTTCAAAATAGTTGC 59.031 38.462 4.24 0.00 0.00 4.17
3240 3381 0.247736 ACAGGGTGCTGACGAGATTC 59.752 55.000 0.00 0.00 0.00 2.52
3244 3385 0.668706 CTGAACAGGGTGCTGACGAG 60.669 60.000 0.00 0.00 0.00 4.18
3247 3388 2.497675 TCTATCTGAACAGGGTGCTGAC 59.502 50.000 1.93 0.00 0.00 3.51
3351 3492 6.656693 CCTGTCAAGTCCAATGAACTTATTCT 59.343 38.462 0.00 0.00 35.25 2.40
3528 3670 4.095946 AGTTATGGCATTGTGAACCCAAT 58.904 39.130 4.78 0.00 35.45 3.16
3578 3720 3.027412 TGACTCTCTGCTCCCAGTTATC 58.973 50.000 0.00 0.00 40.09 1.75
3776 3920 6.363088 ACACATAACACAAAATGCTGAAATCG 59.637 34.615 0.00 0.00 0.00 3.34
3871 4015 4.711355 CAGGATTTCTTTGGCCCTTAATGA 59.289 41.667 0.00 0.00 0.00 2.57
3945 4089 6.817765 TCTTGATTAGGACAAATGGACAAC 57.182 37.500 0.00 0.00 0.00 3.32
4021 4165 7.725397 TCCTCTTACTAGTAAACCACAGTTGTA 59.275 37.037 15.95 0.00 35.97 2.41
4029 4173 4.159879 GCTGCTCCTCTTACTAGTAAACCA 59.840 45.833 15.95 3.18 0.00 3.67
4078 4222 6.038603 GGCTGCAGTATGAATTGTATCTTTGA 59.961 38.462 16.64 0.00 39.69 2.69
4119 4263 0.668096 ATTTTGACTACGCGGACGCA 60.668 50.000 17.35 0.00 45.53 5.24
4209 4372 0.532862 CGTTAGGGATGCAAGCGGAT 60.533 55.000 0.00 0.00 0.00 4.18
4403 4568 1.140852 CCCGAGTATCTTGGATGCCAA 59.859 52.381 4.74 0.00 41.69 4.52
4417 4582 3.141488 CTCCTAGCGCACCCGAGT 61.141 66.667 11.47 0.00 36.29 4.18
4440 4605 6.024552 ACGTCATATGTTCAGGCAATTTTT 57.975 33.333 1.90 0.00 0.00 1.94
4505 4670 4.195416 TCCAAAGTGCCATTTTCCAAAAC 58.805 39.130 0.00 0.00 0.00 2.43
4506 4671 4.163078 TCTCCAAAGTGCCATTTTCCAAAA 59.837 37.500 0.00 0.00 0.00 2.44
4511 4676 4.202151 ACAGTTCTCCAAAGTGCCATTTTC 60.202 41.667 0.00 0.00 0.00 2.29
4516 4681 2.435372 AACAGTTCTCCAAAGTGCCA 57.565 45.000 0.00 0.00 0.00 4.92
4592 4851 1.565305 GCATCCAAGACGCTAGAGTG 58.435 55.000 2.99 0.00 0.00 3.51
4593 4852 0.461961 GGCATCCAAGACGCTAGAGT 59.538 55.000 0.00 0.00 0.00 3.24
4594 4853 0.461548 TGGCATCCAAGACGCTAGAG 59.538 55.000 0.00 0.00 0.00 2.43
4595 4854 0.901827 TTGGCATCCAAGACGCTAGA 59.098 50.000 0.00 0.00 38.75 2.43
4596 4855 3.458872 TTGGCATCCAAGACGCTAG 57.541 52.632 0.00 0.00 38.75 3.42
4623 4882 8.076178 CGATGAACAGTAAATTCCAAAAACTCT 58.924 33.333 0.00 0.00 0.00 3.24
4624 4883 7.326063 CCGATGAACAGTAAATTCCAAAAACTC 59.674 37.037 0.00 0.00 0.00 3.01
4625 4884 7.145323 CCGATGAACAGTAAATTCCAAAAACT 58.855 34.615 0.00 0.00 0.00 2.66
4626 4885 6.364976 CCCGATGAACAGTAAATTCCAAAAAC 59.635 38.462 0.00 0.00 0.00 2.43
4627 4886 6.265649 TCCCGATGAACAGTAAATTCCAAAAA 59.734 34.615 0.00 0.00 0.00 1.94
4628 4887 5.770663 TCCCGATGAACAGTAAATTCCAAAA 59.229 36.000 0.00 0.00 0.00 2.44
4629 4888 5.317808 TCCCGATGAACAGTAAATTCCAAA 58.682 37.500 0.00 0.00 0.00 3.28
4630 4889 4.912586 TCCCGATGAACAGTAAATTCCAA 58.087 39.130 0.00 0.00 0.00 3.53
4631 4890 4.019681 ACTCCCGATGAACAGTAAATTCCA 60.020 41.667 0.00 0.00 0.00 3.53
4632 4891 4.514401 ACTCCCGATGAACAGTAAATTCC 58.486 43.478 0.00 0.00 0.00 3.01
4633 4892 5.642063 TCAACTCCCGATGAACAGTAAATTC 59.358 40.000 0.00 0.00 0.00 2.17
4634 4893 5.556915 TCAACTCCCGATGAACAGTAAATT 58.443 37.500 0.00 0.00 0.00 1.82
4635 4894 5.160607 TCAACTCCCGATGAACAGTAAAT 57.839 39.130 0.00 0.00 0.00 1.40
4636 4895 4.610605 TCAACTCCCGATGAACAGTAAA 57.389 40.909 0.00 0.00 0.00 2.01
4637 4896 4.221924 TCATCAACTCCCGATGAACAGTAA 59.778 41.667 0.49 0.00 44.76 2.24
4638 4897 3.767131 TCATCAACTCCCGATGAACAGTA 59.233 43.478 0.49 0.00 44.76 2.74
4639 4898 2.567169 TCATCAACTCCCGATGAACAGT 59.433 45.455 0.49 0.00 44.76 3.55
4640 4899 3.193263 CTCATCAACTCCCGATGAACAG 58.807 50.000 4.56 0.00 46.43 3.16
4641 4900 2.677902 GCTCATCAACTCCCGATGAACA 60.678 50.000 4.56 0.00 46.43 3.18
4642 4901 1.936547 GCTCATCAACTCCCGATGAAC 59.063 52.381 4.56 0.00 46.43 3.18
4643 4902 1.134401 GGCTCATCAACTCCCGATGAA 60.134 52.381 4.56 0.00 46.43 2.57
4644 4903 0.465705 GGCTCATCAACTCCCGATGA 59.534 55.000 3.09 3.09 45.36 2.92
4645 4904 0.467384 AGGCTCATCAACTCCCGATG 59.533 55.000 0.00 0.00 41.38 3.84
4646 4905 0.467384 CAGGCTCATCAACTCCCGAT 59.533 55.000 0.00 0.00 0.00 4.18
4647 4906 1.617018 CCAGGCTCATCAACTCCCGA 61.617 60.000 0.00 0.00 0.00 5.14
4648 4907 1.153289 CCAGGCTCATCAACTCCCG 60.153 63.158 0.00 0.00 0.00 5.14
4649 4908 1.225704 CCCAGGCTCATCAACTCCC 59.774 63.158 0.00 0.00 0.00 4.30
4650 4909 1.452833 GCCCAGGCTCATCAACTCC 60.453 63.158 0.08 0.00 38.26 3.85
4651 4910 4.232310 GCCCAGGCTCATCAACTC 57.768 61.111 0.08 0.00 38.26 3.01
4723 4982 6.257849 GCAGTCGTTATATGGACATTCAGAAA 59.742 38.462 6.49 0.00 35.63 2.52
4775 5034 4.631813 GCTAAATTAGATGCATCCTACCCG 59.368 45.833 23.06 7.87 0.00 5.28
4776 5035 4.944317 GGCTAAATTAGATGCATCCTACCC 59.056 45.833 23.06 9.13 0.00 3.69
4777 5036 4.631813 CGGCTAAATTAGATGCATCCTACC 59.368 45.833 23.06 11.92 0.00 3.18
4778 5037 5.479306 TCGGCTAAATTAGATGCATCCTAC 58.521 41.667 23.06 0.00 0.00 3.18
4779 5038 5.738619 TCGGCTAAATTAGATGCATCCTA 57.261 39.130 23.06 11.71 0.00 2.94
4780 5039 4.623932 TCGGCTAAATTAGATGCATCCT 57.376 40.909 23.06 12.70 0.00 3.24
4781 5040 5.452777 GTTTCGGCTAAATTAGATGCATCC 58.547 41.667 23.06 4.14 0.00 3.51
4782 5041 5.452777 GGTTTCGGCTAAATTAGATGCATC 58.547 41.667 19.37 19.37 0.00 3.91
4783 5042 4.024048 CGGTTTCGGCTAAATTAGATGCAT 60.024 41.667 0.00 0.00 0.00 3.96
4784 5043 3.311322 CGGTTTCGGCTAAATTAGATGCA 59.689 43.478 3.88 0.00 0.00 3.96
4785 5044 3.558418 TCGGTTTCGGCTAAATTAGATGC 59.442 43.478 3.88 0.00 36.95 3.91
4786 5045 4.318831 GCTCGGTTTCGGCTAAATTAGATG 60.319 45.833 3.88 0.00 36.95 2.90
4787 5046 3.808174 GCTCGGTTTCGGCTAAATTAGAT 59.192 43.478 3.88 0.00 36.95 1.98
4788 5047 3.118884 AGCTCGGTTTCGGCTAAATTAGA 60.119 43.478 3.88 0.00 39.71 2.10
4789 5048 3.195661 AGCTCGGTTTCGGCTAAATTAG 58.804 45.455 0.00 0.00 39.71 1.73
4790 5049 3.255969 AGCTCGGTTTCGGCTAAATTA 57.744 42.857 0.00 0.00 39.71 1.40
4791 5050 2.109425 AGCTCGGTTTCGGCTAAATT 57.891 45.000 0.00 0.00 39.71 1.82
4792 5051 2.007608 GAAGCTCGGTTTCGGCTAAAT 58.992 47.619 0.00 0.00 40.26 1.40
4793 5052 1.435577 GAAGCTCGGTTTCGGCTAAA 58.564 50.000 0.00 0.00 40.26 1.85
4794 5053 0.390735 GGAAGCTCGGTTTCGGCTAA 60.391 55.000 0.00 0.00 40.26 3.09
4795 5054 1.217244 GGAAGCTCGGTTTCGGCTA 59.783 57.895 0.00 0.00 40.26 3.93
4796 5055 2.047179 GGAAGCTCGGTTTCGGCT 60.047 61.111 0.00 0.00 41.93 5.52
4797 5056 0.461339 TATGGAAGCTCGGTTTCGGC 60.461 55.000 0.00 0.00 36.95 5.54
4798 5057 2.018542 TTATGGAAGCTCGGTTTCGG 57.981 50.000 0.00 0.00 36.95 4.30
4875 5158 5.301551 CCATCGGGAATTTCCAATCACATTA 59.698 40.000 17.08 0.00 38.64 1.90
4884 8447 0.995803 TCCACCATCGGGAATTTCCA 59.004 50.000 17.08 0.00 38.64 3.53
4885 8448 1.749063 GTTCCACCATCGGGAATTTCC 59.251 52.381 6.91 6.91 45.55 3.13
4962 8529 3.199946 TCCAGGGTTCACATATCCTTGAC 59.800 47.826 0.00 0.00 31.35 3.18
4963 8530 3.455910 CTCCAGGGTTCACATATCCTTGA 59.544 47.826 0.00 0.00 31.35 3.02
4964 8531 3.200825 ACTCCAGGGTTCACATATCCTTG 59.799 47.826 0.00 0.00 0.00 3.61
4965 8532 3.464828 ACTCCAGGGTTCACATATCCTT 58.535 45.455 0.00 0.00 0.00 3.36
4966 8533 3.136641 ACTCCAGGGTTCACATATCCT 57.863 47.619 0.00 0.00 0.00 3.24
4967 8534 3.933861 AACTCCAGGGTTCACATATCC 57.066 47.619 0.00 0.00 0.00 2.59
4968 8535 4.816925 GCTAAACTCCAGGGTTCACATATC 59.183 45.833 0.00 0.00 0.00 1.63
4969 8536 4.227300 TGCTAAACTCCAGGGTTCACATAT 59.773 41.667 0.00 0.00 0.00 1.78
5030 8597 5.934625 ACGGCATGCAAAATATGGTTTTAAA 59.065 32.000 21.36 0.00 0.00 1.52
5033 8600 3.683822 CACGGCATGCAAAATATGGTTTT 59.316 39.130 21.36 0.00 0.00 2.43
5053 8621 6.861065 TGACTAAGATTCCTTGTTCAACAC 57.139 37.500 0.00 0.00 33.94 3.32
5152 8736 1.065551 CGACGGCACTCTACATCATCA 59.934 52.381 0.00 0.00 0.00 3.07
5173 8757 5.412384 TCCCAAGGAGATACCCTATTAAGG 58.588 45.833 0.00 0.00 43.25 2.69
5207 8791 0.880718 GATCCCGAAACCGATCCAGC 60.881 60.000 0.00 0.00 30.64 4.85
5287 8871 4.164822 CAACCTACTTGGAAGCAACATG 57.835 45.455 0.00 0.00 39.71 3.21
5493 9078 2.973899 TCAGACGCCTGAGAAGCC 59.026 61.111 0.00 0.00 44.01 4.35
5560 9145 2.041081 CTGGAACCCCTGGAATGTTACA 59.959 50.000 0.00 1.94 32.18 2.41
5770 9355 6.437928 ACATAAGCCATTTATATGTTGCACG 58.562 36.000 0.00 0.00 37.03 5.34
5792 9377 2.545742 CGATAATCGCATCCCTGTGACA 60.546 50.000 0.00 0.00 44.27 3.58
5953 9538 3.470709 CCATATCTTGAGTGGCGTTGAT 58.529 45.455 0.00 0.00 0.00 2.57
5961 9546 5.102953 TGGTTCTTCCCATATCTTGAGTG 57.897 43.478 0.00 0.00 34.77 3.51
6008 9593 2.099756 ACTGCTTTGCCTGAAACAAGAC 59.900 45.455 0.00 0.00 0.00 3.01
6028 9613 3.320673 AGTTCCAGCACAACTAGCTAC 57.679 47.619 0.00 0.00 41.14 3.58
6040 9625 2.628178 AGGGCAACTTTTTAGTTCCAGC 59.372 45.455 0.00 0.00 0.00 4.85
6059 9644 2.513204 CTGCACTGCCGATGGAGG 60.513 66.667 0.00 0.00 32.27 4.30
6067 9652 1.505353 GTTCATGCTCTGCACTGCC 59.495 57.895 0.00 0.00 43.04 4.85
6196 9781 2.420058 GGCTTTAAAGGCTGGAGCTA 57.580 50.000 29.08 0.00 46.98 3.32
6309 9894 3.614870 GCTCATGAACCTGCGGAATTTTT 60.615 43.478 0.00 0.00 0.00 1.94
6313 9898 0.035152 TGCTCATGAACCTGCGGAAT 60.035 50.000 0.00 0.00 0.00 3.01
6316 9901 0.169672 CTTTGCTCATGAACCTGCGG 59.830 55.000 0.00 0.00 0.00 5.69
6665 10251 9.146984 TGCTAGTACAAACAAGTCATAACATAC 57.853 33.333 0.00 0.00 0.00 2.39
6710 10296 9.719355 TGCTAATTCAAACAAGAACTACATCTA 57.281 29.630 0.00 0.00 0.00 1.98
7178 10768 2.480759 CCATGAACTTGCTGCTTATGGC 60.481 50.000 0.00 0.00 42.22 4.40
7179 10769 2.480759 GCCATGAACTTGCTGCTTATGG 60.481 50.000 0.00 3.72 37.30 2.74
7180 10770 2.426024 AGCCATGAACTTGCTGCTTATG 59.574 45.455 0.00 0.00 33.23 1.90
7181 10771 2.731572 AGCCATGAACTTGCTGCTTAT 58.268 42.857 0.00 0.00 33.23 1.73
7182 10772 2.205022 AGCCATGAACTTGCTGCTTA 57.795 45.000 0.00 0.00 33.23 3.09
7183 10773 2.205022 TAGCCATGAACTTGCTGCTT 57.795 45.000 0.00 0.00 36.57 3.91
7184 10774 1.815003 GTTAGCCATGAACTTGCTGCT 59.185 47.619 0.00 0.00 36.57 4.24
7185 10775 1.135286 GGTTAGCCATGAACTTGCTGC 60.135 52.381 0.00 0.00 36.57 5.25
7186 10776 2.440409 AGGTTAGCCATGAACTTGCTG 58.560 47.619 0.00 0.00 36.57 4.41
7187 10777 2.887151 AGGTTAGCCATGAACTTGCT 57.113 45.000 0.00 0.00 39.10 3.91
7188 10778 5.358160 AGAATAAGGTTAGCCATGAACTTGC 59.642 40.000 0.00 0.00 37.19 4.01
7189 10779 6.678900 GCAGAATAAGGTTAGCCATGAACTTG 60.679 42.308 0.00 0.00 37.19 3.16
7190 10780 5.358160 GCAGAATAAGGTTAGCCATGAACTT 59.642 40.000 0.00 0.00 37.19 2.66
7191 10781 4.884164 GCAGAATAAGGTTAGCCATGAACT 59.116 41.667 0.00 0.00 37.19 3.01
7192 10782 4.260784 CGCAGAATAAGGTTAGCCATGAAC 60.261 45.833 0.00 0.00 37.19 3.18
7193 10783 3.876914 CGCAGAATAAGGTTAGCCATGAA 59.123 43.478 0.00 0.00 37.19 2.57
7194 10784 3.133901 TCGCAGAATAAGGTTAGCCATGA 59.866 43.478 0.00 0.00 37.19 3.07
7195 10785 3.466836 TCGCAGAATAAGGTTAGCCATG 58.533 45.455 0.00 0.00 37.19 3.66
7196 10786 3.838244 TCGCAGAATAAGGTTAGCCAT 57.162 42.857 0.00 0.00 37.19 4.40
7197 10787 3.267483 GTTCGCAGAATAAGGTTAGCCA 58.733 45.455 0.00 0.00 45.90 4.75
7198 10788 2.284417 CGTTCGCAGAATAAGGTTAGCC 59.716 50.000 0.00 0.00 45.90 3.93
7199 10789 3.000022 GTCGTTCGCAGAATAAGGTTAGC 60.000 47.826 0.00 0.00 45.90 3.09
7200 10790 3.239941 CGTCGTTCGCAGAATAAGGTTAG 59.760 47.826 0.00 0.00 45.90 2.34
7201 10791 3.119884 TCGTCGTTCGCAGAATAAGGTTA 60.120 43.478 0.00 0.00 45.90 2.85
7202 10792 1.990563 CGTCGTTCGCAGAATAAGGTT 59.009 47.619 0.00 0.00 45.90 3.50
7203 10793 1.200716 TCGTCGTTCGCAGAATAAGGT 59.799 47.619 0.00 0.00 45.90 3.50
7204 10794 1.582502 GTCGTCGTTCGCAGAATAAGG 59.417 52.381 0.00 0.00 45.90 2.69
7205 10795 2.247637 TGTCGTCGTTCGCAGAATAAG 58.752 47.619 0.00 0.00 45.90 1.73
7206 10796 2.334971 TGTCGTCGTTCGCAGAATAA 57.665 45.000 0.00 0.00 45.90 1.40
7207 10797 2.334971 TTGTCGTCGTTCGCAGAATA 57.665 45.000 0.00 0.00 45.90 1.75
7208 10798 1.493772 TTTGTCGTCGTTCGCAGAAT 58.506 45.000 0.00 0.00 45.90 2.40
7209 10799 1.279152 TTTTGTCGTCGTTCGCAGAA 58.721 45.000 0.00 0.00 45.90 3.02
7210 10800 1.256895 CTTTTTGTCGTCGTTCGCAGA 59.743 47.619 0.00 0.00 39.67 4.26
7211 10801 1.005347 ACTTTTTGTCGTCGTTCGCAG 60.005 47.619 0.00 0.00 39.67 5.18
7212 10802 1.000884 ACTTTTTGTCGTCGTTCGCA 58.999 45.000 0.00 0.00 39.67 5.10
7213 10803 2.909076 TACTTTTTGTCGTCGTTCGC 57.091 45.000 0.00 0.00 39.67 4.70
7214 10804 5.483213 TCTTTTACTTTTTGTCGTCGTTCG 58.517 37.500 0.00 0.00 41.41 3.95
7215 10805 7.709385 TTTCTTTTACTTTTTGTCGTCGTTC 57.291 32.000 0.00 0.00 0.00 3.95
7216 10806 8.179615 AGATTTCTTTTACTTTTTGTCGTCGTT 58.820 29.630 0.00 0.00 0.00 3.85
7217 10807 7.691158 AGATTTCTTTTACTTTTTGTCGTCGT 58.309 30.769 0.00 0.00 0.00 4.34
7218 10808 8.543071 AAGATTTCTTTTACTTTTTGTCGTCG 57.457 30.769 0.00 0.00 30.82 5.12
7232 10822 9.799106 TCAACTGAGGATAGAAAGATTTCTTTT 57.201 29.630 12.73 2.30 44.70 2.27
7233 10823 9.447157 CTCAACTGAGGATAGAAAGATTTCTTT 57.553 33.333 12.73 5.27 41.57 2.52
7250 10840 1.613836 AAAGCTTGGCCTCAACTGAG 58.386 50.000 3.32 0.00 41.71 3.35
7251 10841 2.071778 AAAAGCTTGGCCTCAACTGA 57.928 45.000 3.32 0.00 0.00 3.41
7252 10842 4.219288 AGATTAAAAGCTTGGCCTCAACTG 59.781 41.667 3.32 0.00 0.00 3.16
7253 10843 4.411013 AGATTAAAAGCTTGGCCTCAACT 58.589 39.130 3.32 0.00 0.00 3.16
7254 10844 4.790765 AGATTAAAAGCTTGGCCTCAAC 57.209 40.909 3.32 0.00 0.00 3.18
7255 10845 5.047802 CAGAAGATTAAAAGCTTGGCCTCAA 60.048 40.000 3.32 0.00 34.31 3.02
7256 10846 4.460382 CAGAAGATTAAAAGCTTGGCCTCA 59.540 41.667 3.32 0.00 34.31 3.86
7257 10847 4.142293 CCAGAAGATTAAAAGCTTGGCCTC 60.142 45.833 3.32 0.00 34.31 4.70
7258 10848 3.766051 CCAGAAGATTAAAAGCTTGGCCT 59.234 43.478 3.32 0.00 34.31 5.19
7259 10849 3.763897 TCCAGAAGATTAAAAGCTTGGCC 59.236 43.478 0.00 0.00 34.31 5.36
7260 10850 5.126061 TGATCCAGAAGATTAAAAGCTTGGC 59.874 40.000 0.00 0.00 34.31 4.52
7261 10851 6.558909 GTGATCCAGAAGATTAAAAGCTTGG 58.441 40.000 0.00 0.00 34.31 3.61
7262 10852 6.092670 TCGTGATCCAGAAGATTAAAAGCTTG 59.907 38.462 0.00 0.00 34.31 4.01
7263 10853 6.173339 TCGTGATCCAGAAGATTAAAAGCTT 58.827 36.000 0.00 0.00 37.35 3.74
7264 10854 5.734720 TCGTGATCCAGAAGATTAAAAGCT 58.265 37.500 0.00 0.00 34.42 3.74
7265 10855 6.422776 TTCGTGATCCAGAAGATTAAAAGC 57.577 37.500 0.00 0.00 34.42 3.51
7266 10856 6.481984 GCTTCGTGATCCAGAAGATTAAAAG 58.518 40.000 23.33 3.86 44.76 2.27
7267 10857 5.063438 CGCTTCGTGATCCAGAAGATTAAAA 59.937 40.000 23.33 0.00 44.76 1.52
7268 10858 4.566759 CGCTTCGTGATCCAGAAGATTAAA 59.433 41.667 23.33 0.00 44.76 1.52
7269 10859 4.112634 CGCTTCGTGATCCAGAAGATTAA 58.887 43.478 23.33 0.00 44.76 1.40
7270 10860 3.380320 TCGCTTCGTGATCCAGAAGATTA 59.620 43.478 23.33 10.16 44.76 1.75
7271 10861 2.166459 TCGCTTCGTGATCCAGAAGATT 59.834 45.455 23.33 0.00 44.76 2.40
7272 10862 1.751351 TCGCTTCGTGATCCAGAAGAT 59.249 47.619 23.33 0.00 44.76 2.40
7273 10863 1.173913 TCGCTTCGTGATCCAGAAGA 58.826 50.000 23.33 7.81 44.76 2.87
7274 10864 1.857217 CATCGCTTCGTGATCCAGAAG 59.143 52.381 17.83 17.83 44.77 2.85
7275 10865 1.204704 ACATCGCTTCGTGATCCAGAA 59.795 47.619 0.00 0.00 29.68 3.02
7276 10866 0.817654 ACATCGCTTCGTGATCCAGA 59.182 50.000 0.00 0.00 29.68 3.86
7277 10867 2.120232 GTACATCGCTTCGTGATCCAG 58.880 52.381 0.00 0.00 29.68 3.86
7278 10868 1.749063 AGTACATCGCTTCGTGATCCA 59.251 47.619 0.00 0.00 29.68 3.41
7279 10869 2.120232 CAGTACATCGCTTCGTGATCC 58.880 52.381 0.00 0.00 29.68 3.36
7280 10870 3.066369 TCAGTACATCGCTTCGTGATC 57.934 47.619 0.00 0.00 29.68 2.92
7281 10871 3.316588 AGATCAGTACATCGCTTCGTGAT 59.683 43.478 0.00 0.00 32.60 3.06
7282 10872 2.683362 AGATCAGTACATCGCTTCGTGA 59.317 45.455 0.00 0.00 0.00 4.35
7283 10873 3.071786 AGATCAGTACATCGCTTCGTG 57.928 47.619 0.00 0.00 0.00 4.35
7284 10874 5.440234 AATAGATCAGTACATCGCTTCGT 57.560 39.130 0.00 0.00 0.00 3.85
7285 10875 6.409473 CGATAATAGATCAGTACATCGCTTCG 59.591 42.308 0.00 0.00 0.00 3.79
7286 10876 6.689241 CCGATAATAGATCAGTACATCGCTTC 59.311 42.308 0.00 0.00 34.11 3.86
7287 10877 6.374613 TCCGATAATAGATCAGTACATCGCTT 59.625 38.462 0.00 0.00 34.11 4.68
7288 10878 5.880887 TCCGATAATAGATCAGTACATCGCT 59.119 40.000 0.00 0.00 34.11 4.93
7289 10879 6.120378 TCCGATAATAGATCAGTACATCGC 57.880 41.667 0.00 0.00 34.11 4.58
7290 10880 9.574458 AAATTCCGATAATAGATCAGTACATCG 57.426 33.333 0.00 2.90 34.96 3.84
7292 10882 9.155975 GCAAATTCCGATAATAGATCAGTACAT 57.844 33.333 0.00 0.00 0.00 2.29
7293 10883 8.367911 AGCAAATTCCGATAATAGATCAGTACA 58.632 33.333 0.00 0.00 0.00 2.90
7294 10884 8.764524 AGCAAATTCCGATAATAGATCAGTAC 57.235 34.615 0.00 0.00 0.00 2.73
7296 10886 9.376075 CATAGCAAATTCCGATAATAGATCAGT 57.624 33.333 0.00 0.00 0.00 3.41
7297 10887 9.591792 TCATAGCAAATTCCGATAATAGATCAG 57.408 33.333 0.00 0.00 0.00 2.90
7301 10891 9.591792 CTGATCATAGCAAATTCCGATAATAGA 57.408 33.333 0.00 0.00 0.00 1.98
7302 10892 8.333908 GCTGATCATAGCAAATTCCGATAATAG 58.666 37.037 0.00 0.00 43.17 1.73
7303 10893 7.010460 CGCTGATCATAGCAAATTCCGATAATA 59.990 37.037 7.61 0.00 43.87 0.98
7304 10894 6.183360 CGCTGATCATAGCAAATTCCGATAAT 60.183 38.462 7.61 0.00 43.87 1.28
7305 10895 5.120674 CGCTGATCATAGCAAATTCCGATAA 59.879 40.000 7.61 0.00 43.87 1.75
7306 10896 4.627035 CGCTGATCATAGCAAATTCCGATA 59.373 41.667 7.61 0.00 43.87 2.92
7307 10897 3.434641 CGCTGATCATAGCAAATTCCGAT 59.565 43.478 7.61 0.00 43.87 4.18
7308 10898 2.802247 CGCTGATCATAGCAAATTCCGA 59.198 45.455 7.61 0.00 43.87 4.55
7309 10899 2.802247 TCGCTGATCATAGCAAATTCCG 59.198 45.455 7.61 0.00 43.87 4.30
7310 10900 3.561310 TGTCGCTGATCATAGCAAATTCC 59.439 43.478 7.61 0.00 43.87 3.01
7311 10901 4.272018 AGTGTCGCTGATCATAGCAAATTC 59.728 41.667 7.61 0.00 43.87 2.17
7312 10902 4.194640 AGTGTCGCTGATCATAGCAAATT 58.805 39.130 7.61 0.00 43.87 1.82
7313 10903 3.801698 AGTGTCGCTGATCATAGCAAAT 58.198 40.909 7.61 0.00 43.87 2.32
7314 10904 3.251479 AGTGTCGCTGATCATAGCAAA 57.749 42.857 7.61 0.00 43.87 3.68
7315 10905 2.967599 AGTGTCGCTGATCATAGCAA 57.032 45.000 7.61 0.00 43.87 3.91
7325 10915 8.609206 TAGATATTTCTGAGGCAGTGTCGCTG 62.609 46.154 9.13 9.13 39.54 5.18
7326 10916 0.322975 ATTTCTGAGGCAGTGTCGCT 59.677 50.000 0.00 0.00 32.61 4.93
7327 10917 2.010145 TATTTCTGAGGCAGTGTCGC 57.990 50.000 0.00 0.00 32.61 5.19
7328 10918 4.052159 AGATATTTCTGAGGCAGTGTCG 57.948 45.455 0.00 0.00 32.61 4.35
7329 10919 6.155475 ACTAGATATTTCTGAGGCAGTGTC 57.845 41.667 0.00 0.00 33.17 3.67
7330 10920 6.382570 AGAACTAGATATTTCTGAGGCAGTGT 59.617 38.462 0.00 0.00 33.17 3.55
7331 10921 6.815089 AGAACTAGATATTTCTGAGGCAGTG 58.185 40.000 0.00 0.00 33.17 3.66
7332 10922 7.014808 GGTAGAACTAGATATTTCTGAGGCAGT 59.985 40.741 0.00 0.00 33.96 4.40
7333 10923 7.014711 TGGTAGAACTAGATATTTCTGAGGCAG 59.985 40.741 0.00 0.00 33.96 4.85
7334 10924 6.839134 TGGTAGAACTAGATATTTCTGAGGCA 59.161 38.462 0.00 0.00 33.96 4.75
7335 10925 7.291411 TGGTAGAACTAGATATTTCTGAGGC 57.709 40.000 0.00 0.00 33.96 4.70
7358 10948 1.632422 GGACGATGCTGCCAATTTTG 58.368 50.000 0.00 0.00 0.00 2.44
7359 10949 0.171007 CGGACGATGCTGCCAATTTT 59.829 50.000 0.00 0.00 0.00 1.82
7360 10950 1.656818 CCGGACGATGCTGCCAATTT 61.657 55.000 0.00 0.00 0.00 1.82
7361 10951 2.114670 CCGGACGATGCTGCCAATT 61.115 57.895 0.00 0.00 0.00 2.32
7362 10952 2.514592 CCGGACGATGCTGCCAAT 60.515 61.111 0.00 0.00 0.00 3.16
7363 10953 4.015406 ACCGGACGATGCTGCCAA 62.015 61.111 9.46 0.00 0.00 4.52
7364 10954 4.758251 CACCGGACGATGCTGCCA 62.758 66.667 9.46 0.00 0.00 4.92
7366 10956 4.451150 TCCACCGGACGATGCTGC 62.451 66.667 9.46 0.00 0.00 5.25
7367 10957 2.202797 CTCCACCGGACGATGCTG 60.203 66.667 9.46 0.00 0.00 4.41
7368 10958 3.461773 CCTCCACCGGACGATGCT 61.462 66.667 9.46 0.00 0.00 3.79
7369 10959 4.530857 CCCTCCACCGGACGATGC 62.531 72.222 9.46 0.00 0.00 3.91
7370 10960 4.530857 GCCCTCCACCGGACGATG 62.531 72.222 9.46 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.