Multiple sequence alignment - TraesCS3A01G245500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G245500 chr3A 100.000 7128 0 0 1 7128 459955028 459962155 0.000000e+00 13164.0
1 TraesCS3A01G245500 chr3D 98.291 6731 94 7 14 6727 342522964 342516238 0.000000e+00 11773.0
2 TraesCS3A01G245500 chr3B 98.373 5838 80 4 16 5852 441462065 441456242 0.000000e+00 10240.0
3 TraesCS3A01G245500 chr3B 91.896 1197 69 14 5850 7031 441456149 441454966 0.000000e+00 1648.0
4 TraesCS3A01G245500 chr2B 81.687 3058 456 44 251 3247 716053441 716050427 0.000000e+00 2449.0
5 TraesCS3A01G245500 chr2B 85.480 2197 306 7 3361 5555 716050337 716048152 0.000000e+00 2278.0
6 TraesCS3A01G245500 chr2A 81.037 3048 473 61 243 3220 725420685 725417673 0.000000e+00 2329.0
7 TraesCS3A01G245500 chr2A 83.904 2249 347 10 3320 5553 725417627 725415379 0.000000e+00 2134.0
8 TraesCS3A01G245500 chr7D 89.474 76 4 4 6342 6416 214364450 214364522 7.610000e-15 93.5
9 TraesCS3A01G245500 chr4A 100.000 32 0 0 6810 6841 550075947 550075916 7.720000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G245500 chr3A 459955028 459962155 7127 False 13164.0 13164 100.0000 1 7128 1 chr3A.!!$F1 7127
1 TraesCS3A01G245500 chr3D 342516238 342522964 6726 True 11773.0 11773 98.2910 14 6727 1 chr3D.!!$R1 6713
2 TraesCS3A01G245500 chr3B 441454966 441462065 7099 True 5944.0 10240 95.1345 16 7031 2 chr3B.!!$R1 7015
3 TraesCS3A01G245500 chr2B 716048152 716053441 5289 True 2363.5 2449 83.5835 251 5555 2 chr2B.!!$R1 5304
4 TraesCS3A01G245500 chr2A 725415379 725420685 5306 True 2231.5 2329 82.4705 243 5553 2 chr2A.!!$R1 5310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 172 4.344865 ATCCACCACCACGCCCAC 62.345 66.667 0.00 0.00 0.00 4.61 F
1476 1517 5.868043 TCATGAAGTTCTTGTATGCAGTG 57.132 39.130 16.01 0.00 0.00 3.66 F
2421 2504 5.163364 GCTAGAGATCATCAAGGAAAGGACA 60.163 44.000 0.00 0.00 0.00 4.02 F
3370 3489 2.896801 GCAACCAGTGGTGTGAGCG 61.897 63.158 17.56 1.75 35.34 5.03 F
3909 4043 4.767255 GTCACTCTGGGGCAGCGG 62.767 72.222 0.00 0.00 0.00 5.52 F
6054 6284 4.315803 GCACATGGTCAAGTACTGTAGTT 58.684 43.478 0.00 2.06 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1053 1076 0.537371 CCTCCACAAAGCCCGTCTTT 60.537 55.000 0.00 0.00 45.43 2.52 R
3282 3383 1.066286 CCAGCACTCCCTTCTCTTCTG 60.066 57.143 0.00 0.00 0.00 3.02 R
4335 4469 3.260884 TGTTCTTGGTGATGTACTCCTCC 59.739 47.826 0.00 0.00 33.75 4.30 R
5738 5872 4.341806 TGTGGTGCTGTTTCTTCAATGAAT 59.658 37.500 0.00 0.00 0.00 2.57 R
6056 6286 3.386726 AGTGTGTTAGAACAGCTGTACCA 59.613 43.478 22.01 11.43 40.05 3.25 R
7067 7313 0.109781 GCGTTCGGTGCATGACAAAT 60.110 50.000 0.00 0.00 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 142 8.806429 AGGATTTTCAATTTTTCAAACCACTT 57.194 26.923 0.00 0.00 0.00 3.16
141 146 7.986085 TTTCAATTTTTCAAACCACTTCCAA 57.014 28.000 0.00 0.00 0.00 3.53
167 172 4.344865 ATCCACCACCACGCCCAC 62.345 66.667 0.00 0.00 0.00 4.61
1475 1516 6.183360 CGAATCATGAAGTTCTTGTATGCAGT 60.183 38.462 16.01 0.00 0.00 4.40
1476 1517 5.868043 TCATGAAGTTCTTGTATGCAGTG 57.132 39.130 16.01 0.00 0.00 3.66
2421 2504 5.163364 GCTAGAGATCATCAAGGAAAGGACA 60.163 44.000 0.00 0.00 0.00 4.02
3282 3383 4.203226 GTTCCTCAAGATTTGGATCCTCC 58.797 47.826 14.23 0.00 36.96 4.30
3370 3489 2.896801 GCAACCAGTGGTGTGAGCG 61.897 63.158 17.56 1.75 35.34 5.03
3909 4043 4.767255 GTCACTCTGGGGCAGCGG 62.767 72.222 0.00 0.00 0.00 5.52
5738 5872 8.513774 GTTAGTTATTTTTATCCAACCGTTCCA 58.486 33.333 0.00 0.00 0.00 3.53
5896 6126 5.885230 TTGAATCGCAAATGTCTTCTCAT 57.115 34.783 0.00 0.00 32.46 2.90
6054 6284 4.315803 GCACATGGTCAAGTACTGTAGTT 58.684 43.478 0.00 2.06 0.00 2.24
6056 6286 5.238650 GCACATGGTCAAGTACTGTAGTTTT 59.761 40.000 5.17 0.00 0.00 2.43
6259 6489 4.214119 CGATTCGGCTCATATTCATGGTTT 59.786 41.667 0.00 0.00 32.61 3.27
6338 6568 3.070018 CTCTCGTGCCAGACATTTCTTT 58.930 45.455 0.00 0.00 0.00 2.52
6374 6604 8.872845 CATATTTTTGTTGTAAAGCTGGGAATC 58.127 33.333 0.00 0.00 0.00 2.52
6469 6699 0.179000 ATGTCATCGGCTGGGTCTTC 59.821 55.000 0.00 0.00 0.00 2.87
6523 6753 6.926272 GGGATGTACTACTTCTCATGTCAATC 59.074 42.308 0.00 0.00 0.00 2.67
6620 6850 3.920144 GCATGCTGCAGTCTGAATC 57.080 52.632 16.64 0.00 44.26 2.52
6621 6851 1.380524 GCATGCTGCAGTCTGAATCT 58.619 50.000 16.64 0.00 44.26 2.40
6648 6878 1.942657 TGTTCTTCAGCTCTTGTGCAC 59.057 47.619 10.75 10.75 34.99 4.57
6649 6879 1.942657 GTTCTTCAGCTCTTGTGCACA 59.057 47.619 17.42 17.42 34.99 4.57
6662 6904 3.857854 GCACAGTGATGCGCCTCG 61.858 66.667 4.18 0.00 35.50 4.63
6667 6909 2.125912 GTGATGCGCCTCGTCAGT 60.126 61.111 4.18 0.00 41.10 3.41
6676 6918 1.078759 GCCTCGTCAGTTCATGTCGG 61.079 60.000 0.00 0.00 40.29 4.79
6688 6930 3.120321 TCATGTCGGCTTGTGTTTACT 57.880 42.857 2.59 0.00 0.00 2.24
6691 6933 1.134340 TGTCGGCTTGTGTTTACTGGT 60.134 47.619 0.00 0.00 0.00 4.00
6738 6981 0.179037 GTGCCATGCTCTATGCTCCA 60.179 55.000 0.00 0.00 43.37 3.86
6747 6990 2.625737 CTCTATGCTCCACCTTGTGTG 58.374 52.381 0.00 0.00 45.01 3.82
6792 7035 0.947180 TTTTACCCGCTGTGAGACGC 60.947 55.000 0.00 0.00 0.00 5.19
6794 7037 2.486636 TTACCCGCTGTGAGACGCAG 62.487 60.000 7.78 7.78 43.89 5.18
6814 7057 7.971455 ACGCAGTTCCATTTTCTTAATACTAC 58.029 34.615 0.00 0.00 37.78 2.73
6815 7058 7.117454 CGCAGTTCCATTTTCTTAATACTACG 58.883 38.462 0.00 0.00 0.00 3.51
6817 7060 7.903431 GCAGTTCCATTTTCTTAATACTACGTG 59.097 37.037 0.00 0.00 0.00 4.49
6818 7061 8.932791 CAGTTCCATTTTCTTAATACTACGTGT 58.067 33.333 0.00 0.00 0.00 4.49
6819 7062 9.498176 AGTTCCATTTTCTTAATACTACGTGTT 57.502 29.630 0.00 0.00 0.00 3.32
7080 7326 9.630098 CTATATTTGGAATATTTGTCATGCACC 57.370 33.333 0.00 0.00 0.00 5.01
7081 7327 4.368874 TTGGAATATTTGTCATGCACCG 57.631 40.909 0.00 0.00 0.00 4.94
7082 7328 3.615155 TGGAATATTTGTCATGCACCGA 58.385 40.909 0.00 0.00 0.00 4.69
7083 7329 4.013050 TGGAATATTTGTCATGCACCGAA 58.987 39.130 0.00 0.00 0.00 4.30
7084 7330 4.142491 TGGAATATTTGTCATGCACCGAAC 60.142 41.667 0.00 0.00 0.00 3.95
7085 7331 3.673746 ATATTTGTCATGCACCGAACG 57.326 42.857 0.00 0.00 0.00 3.95
7086 7332 0.109781 ATTTGTCATGCACCGAACGC 60.110 50.000 0.00 0.00 0.00 4.84
7087 7333 1.163420 TTTGTCATGCACCGAACGCT 61.163 50.000 0.00 0.00 0.00 5.07
7088 7334 1.163420 TTGTCATGCACCGAACGCTT 61.163 50.000 0.00 0.00 0.00 4.68
7089 7335 1.132640 GTCATGCACCGAACGCTTC 59.867 57.895 0.00 0.00 0.00 3.86
7090 7336 2.032634 TCATGCACCGAACGCTTCC 61.033 57.895 0.00 0.00 0.00 3.46
7091 7337 2.746277 ATGCACCGAACGCTTCCC 60.746 61.111 0.00 0.00 0.00 3.97
7094 7340 4.675029 CACCGAACGCTTCCCCGT 62.675 66.667 0.00 0.00 44.41 5.28
7095 7341 2.990967 ACCGAACGCTTCCCCGTA 60.991 61.111 0.00 0.00 41.16 4.02
7096 7342 2.202703 CCGAACGCTTCCCCGTAG 60.203 66.667 0.00 0.00 41.16 3.51
7097 7343 2.703798 CCGAACGCTTCCCCGTAGA 61.704 63.158 0.00 0.00 41.16 2.59
7098 7344 1.226603 CGAACGCTTCCCCGTAGAG 60.227 63.158 0.00 0.00 41.16 2.43
7099 7345 1.651240 CGAACGCTTCCCCGTAGAGA 61.651 60.000 0.00 0.00 41.16 3.10
7100 7346 0.745468 GAACGCTTCCCCGTAGAGAT 59.255 55.000 0.00 0.00 41.16 2.75
7101 7347 0.460311 AACGCTTCCCCGTAGAGATG 59.540 55.000 0.00 0.00 41.16 2.90
7102 7348 1.364171 CGCTTCCCCGTAGAGATGG 59.636 63.158 0.00 0.00 0.00 3.51
7103 7349 1.392710 CGCTTCCCCGTAGAGATGGT 61.393 60.000 0.00 0.00 0.00 3.55
7104 7350 0.831307 GCTTCCCCGTAGAGATGGTT 59.169 55.000 0.00 0.00 0.00 3.67
7105 7351 1.202545 GCTTCCCCGTAGAGATGGTTC 60.203 57.143 0.00 0.00 0.00 3.62
7106 7352 1.413077 CTTCCCCGTAGAGATGGTTCC 59.587 57.143 0.00 0.00 0.00 3.62
7107 7353 0.635009 TCCCCGTAGAGATGGTTCCT 59.365 55.000 0.00 0.00 0.00 3.36
7108 7354 1.007963 TCCCCGTAGAGATGGTTCCTT 59.992 52.381 0.00 0.00 0.00 3.36
7109 7355 1.838077 CCCCGTAGAGATGGTTCCTTT 59.162 52.381 0.00 0.00 0.00 3.11
7110 7356 2.158943 CCCCGTAGAGATGGTTCCTTTC 60.159 54.545 0.00 0.00 0.00 2.62
7111 7357 2.500098 CCCGTAGAGATGGTTCCTTTCA 59.500 50.000 0.00 0.00 0.00 2.69
7112 7358 3.430929 CCCGTAGAGATGGTTCCTTTCAG 60.431 52.174 0.00 0.00 0.00 3.02
7113 7359 3.430929 CCGTAGAGATGGTTCCTTTCAGG 60.431 52.174 0.00 0.00 36.46 3.86
7114 7360 3.195825 CGTAGAGATGGTTCCTTTCAGGT 59.804 47.826 0.00 0.00 36.53 4.00
7115 7361 4.322801 CGTAGAGATGGTTCCTTTCAGGTT 60.323 45.833 0.00 0.00 36.53 3.50
7116 7362 4.731313 AGAGATGGTTCCTTTCAGGTTT 57.269 40.909 0.00 0.00 36.53 3.27
7117 7363 4.657013 AGAGATGGTTCCTTTCAGGTTTC 58.343 43.478 0.00 0.00 36.53 2.78
7118 7364 4.352298 AGAGATGGTTCCTTTCAGGTTTCT 59.648 41.667 0.00 0.00 36.53 2.52
7119 7365 5.548056 AGAGATGGTTCCTTTCAGGTTTCTA 59.452 40.000 0.00 0.00 36.53 2.10
7120 7366 6.216456 AGAGATGGTTCCTTTCAGGTTTCTAT 59.784 38.462 0.00 0.00 36.53 1.98
7121 7367 6.183347 AGATGGTTCCTTTCAGGTTTCTATG 58.817 40.000 0.00 0.00 36.53 2.23
7122 7368 4.662278 TGGTTCCTTTCAGGTTTCTATGG 58.338 43.478 0.00 0.00 36.53 2.74
7123 7369 4.017126 GGTTCCTTTCAGGTTTCTATGGG 58.983 47.826 0.00 0.00 36.53 4.00
7124 7370 4.508584 GGTTCCTTTCAGGTTTCTATGGGT 60.509 45.833 0.00 0.00 36.53 4.51
7125 7371 5.077564 GTTCCTTTCAGGTTTCTATGGGTT 58.922 41.667 0.00 0.00 36.53 4.11
7126 7372 5.333566 TCCTTTCAGGTTTCTATGGGTTT 57.666 39.130 0.00 0.00 36.53 3.27
7127 7373 5.711698 TCCTTTCAGGTTTCTATGGGTTTT 58.288 37.500 0.00 0.00 36.53 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.046892 CGTGCTGGAGGGAAGGTG 60.047 66.667 0.00 0.00 0.00 4.00
5 6 1.738099 CGTTCGTGCTGGAGGGAAG 60.738 63.158 0.00 0.00 0.00 3.46
6 7 2.342279 CGTTCGTGCTGGAGGGAA 59.658 61.111 0.00 0.00 0.00 3.97
7 8 4.373116 GCGTTCGTGCTGGAGGGA 62.373 66.667 0.00 0.00 0.00 4.20
8 9 4.680237 TGCGTTCGTGCTGGAGGG 62.680 66.667 0.00 0.00 35.36 4.30
10 11 3.767230 CGTGCGTTCGTGCTGGAG 61.767 66.667 0.00 0.00 35.36 3.86
44 45 1.370051 GAAACGAAACGCTGTGGGC 60.370 57.895 0.00 0.00 37.64 5.36
51 56 1.070108 GGAGGAACTGAAACGAAACGC 60.070 52.381 0.00 0.00 41.55 4.84
137 142 0.407918 GGTGGATGGGGAGTTTTGGA 59.592 55.000 0.00 0.00 0.00 3.53
141 146 1.071314 TGGTGGTGGATGGGGAGTTT 61.071 55.000 0.00 0.00 0.00 2.66
167 172 2.442126 GGGTTTAGGGTTAGATCTGGGG 59.558 54.545 5.18 0.00 0.00 4.96
1053 1076 0.537371 CCTCCACAAAGCCCGTCTTT 60.537 55.000 0.00 0.00 45.43 2.52
1475 1516 1.377202 GGGATCAGAAACGCTGCCA 60.377 57.895 0.00 0.00 44.52 4.92
1476 1517 2.115291 GGGGATCAGAAACGCTGCC 61.115 63.158 0.00 0.00 44.52 4.85
1806 1862 4.879545 ACTACCGGCAACCACAATATAAAG 59.120 41.667 0.00 0.00 0.00 1.85
2421 2504 2.440409 GTCACAATGCCATGTTCCTCT 58.560 47.619 0.00 0.00 0.00 3.69
2722 2811 1.409241 GGCATTCTCCTCATCAGGCAA 60.409 52.381 0.00 0.00 40.12 4.52
3282 3383 1.066286 CCAGCACTCCCTTCTCTTCTG 60.066 57.143 0.00 0.00 0.00 3.02
3370 3489 4.744136 ACTCGCTACCTTTAAACAAAGC 57.256 40.909 0.00 0.00 0.00 3.51
4335 4469 3.260884 TGTTCTTGGTGATGTACTCCTCC 59.739 47.826 0.00 0.00 33.75 4.30
5738 5872 4.341806 TGTGGTGCTGTTTCTTCAATGAAT 59.658 37.500 0.00 0.00 0.00 2.57
6054 6284 4.573201 GTGTGTTAGAACAGCTGTACCAAA 59.427 41.667 22.01 9.62 40.05 3.28
6056 6286 3.386726 AGTGTGTTAGAACAGCTGTACCA 59.613 43.478 22.01 11.43 40.05 3.25
6259 6489 8.445275 TTCACTACAAAACTAGCAAAATCTCA 57.555 30.769 0.00 0.00 0.00 3.27
6338 6568 2.255406 ACAAAAATATGGCAGCACCCA 58.745 42.857 0.00 0.00 39.65 4.51
6485 6715 7.248976 AGTAGTACATCCCAATATGGATCAGA 58.751 38.462 2.52 0.00 43.39 3.27
6617 6847 6.416415 AGAGCTGAAGAACATGATCAAGATT 58.584 36.000 4.68 0.00 0.00 2.40
6620 6850 5.411977 ACAAGAGCTGAAGAACATGATCAAG 59.588 40.000 0.00 0.00 0.00 3.02
6621 6851 5.180680 CACAAGAGCTGAAGAACATGATCAA 59.819 40.000 0.00 0.00 0.00 2.57
6648 6878 2.125952 TGACGAGGCGCATCACTG 60.126 61.111 23.09 8.41 0.00 3.66
6649 6879 2.159819 AACTGACGAGGCGCATCACT 62.160 55.000 23.09 5.85 0.00 3.41
6662 6904 1.195448 CACAAGCCGACATGAACTGAC 59.805 52.381 0.00 0.00 0.00 3.51
6667 6909 3.249799 CAGTAAACACAAGCCGACATGAA 59.750 43.478 0.00 0.00 0.00 2.57
6676 6918 5.831997 AGAATTCAACCAGTAAACACAAGC 58.168 37.500 8.44 0.00 0.00 4.01
6688 6930 3.889815 CCAGGCTCATAGAATTCAACCA 58.110 45.455 8.44 0.00 0.00 3.67
6691 6933 2.511218 AGGCCAGGCTCATAGAATTCAA 59.489 45.455 12.43 0.00 0.00 2.69
6760 7003 0.034477 GGTAAAAGCTAGCCCTGGCA 60.034 55.000 12.13 0.00 44.88 4.92
6761 7004 0.752009 GGGTAAAAGCTAGCCCTGGC 60.752 60.000 12.13 0.00 38.12 4.85
6771 7014 0.796927 GTCTCACAGCGGGTAAAAGC 59.203 55.000 0.00 0.00 0.00 3.51
6792 7035 8.932791 ACACGTAGTATTAAGAAAATGGAACTG 58.067 33.333 0.00 0.00 41.61 3.16
7054 7300 9.630098 GGTGCATGACAAATATTCCAAATATAG 57.370 33.333 0.00 0.00 0.00 1.31
7055 7301 8.296000 CGGTGCATGACAAATATTCCAAATATA 58.704 33.333 0.00 0.00 0.00 0.86
7056 7302 7.014134 TCGGTGCATGACAAATATTCCAAATAT 59.986 33.333 0.00 0.00 0.00 1.28
7057 7303 6.319911 TCGGTGCATGACAAATATTCCAAATA 59.680 34.615 0.00 0.00 0.00 1.40
7058 7304 5.126869 TCGGTGCATGACAAATATTCCAAAT 59.873 36.000 0.00 0.00 0.00 2.32
7059 7305 4.460731 TCGGTGCATGACAAATATTCCAAA 59.539 37.500 0.00 0.00 0.00 3.28
7060 7306 4.013050 TCGGTGCATGACAAATATTCCAA 58.987 39.130 0.00 0.00 0.00 3.53
7061 7307 3.615155 TCGGTGCATGACAAATATTCCA 58.385 40.909 0.00 0.00 0.00 3.53
7062 7308 4.351192 GTTCGGTGCATGACAAATATTCC 58.649 43.478 0.00 0.00 0.00 3.01
7063 7309 4.028383 CGTTCGGTGCATGACAAATATTC 58.972 43.478 0.00 0.00 0.00 1.75
7064 7310 3.730662 GCGTTCGGTGCATGACAAATATT 60.731 43.478 0.00 0.00 0.00 1.28
7065 7311 2.223249 GCGTTCGGTGCATGACAAATAT 60.223 45.455 0.00 0.00 0.00 1.28
7066 7312 1.129624 GCGTTCGGTGCATGACAAATA 59.870 47.619 0.00 0.00 0.00 1.40
7067 7313 0.109781 GCGTTCGGTGCATGACAAAT 60.110 50.000 0.00 0.00 0.00 2.32
7068 7314 1.163420 AGCGTTCGGTGCATGACAAA 61.163 50.000 0.00 0.00 33.85 2.83
7069 7315 1.163420 AAGCGTTCGGTGCATGACAA 61.163 50.000 0.00 0.00 33.85 3.18
7070 7316 1.565156 GAAGCGTTCGGTGCATGACA 61.565 55.000 0.00 0.00 33.85 3.58
7071 7317 1.132640 GAAGCGTTCGGTGCATGAC 59.867 57.895 0.00 0.00 33.85 3.06
7072 7318 2.032634 GGAAGCGTTCGGTGCATGA 61.033 57.895 0.00 0.00 33.85 3.07
7073 7319 2.480555 GGAAGCGTTCGGTGCATG 59.519 61.111 4.81 0.00 33.85 4.06
7074 7320 2.746277 GGGAAGCGTTCGGTGCAT 60.746 61.111 4.81 0.00 33.85 3.96
7077 7323 3.285523 TACGGGGAAGCGTTCGGTG 62.286 63.158 0.00 0.00 0.00 4.94
7078 7324 2.990967 TACGGGGAAGCGTTCGGT 60.991 61.111 0.00 0.00 0.00 4.69
7079 7325 2.202703 CTACGGGGAAGCGTTCGG 60.203 66.667 0.00 0.00 0.00 4.30
7080 7326 1.226603 CTCTACGGGGAAGCGTTCG 60.227 63.158 0.00 0.00 0.00 3.95
7081 7327 0.745468 ATCTCTACGGGGAAGCGTTC 59.255 55.000 0.00 0.00 0.00 3.95
7082 7328 0.460311 CATCTCTACGGGGAAGCGTT 59.540 55.000 0.00 0.00 0.00 4.84
7083 7329 1.392710 CCATCTCTACGGGGAAGCGT 61.393 60.000 0.00 0.00 0.00 5.07
7084 7330 1.364171 CCATCTCTACGGGGAAGCG 59.636 63.158 0.00 0.00 0.00 4.68
7085 7331 0.831307 AACCATCTCTACGGGGAAGC 59.169 55.000 0.00 0.00 0.00 3.86
7086 7332 1.413077 GGAACCATCTCTACGGGGAAG 59.587 57.143 0.00 0.00 0.00 3.46
7087 7333 1.007963 AGGAACCATCTCTACGGGGAA 59.992 52.381 0.00 0.00 0.00 3.97
7088 7334 0.635009 AGGAACCATCTCTACGGGGA 59.365 55.000 0.00 0.00 0.00 4.81
7089 7335 1.497161 AAGGAACCATCTCTACGGGG 58.503 55.000 0.00 0.00 0.00 5.73
7090 7336 2.500098 TGAAAGGAACCATCTCTACGGG 59.500 50.000 0.00 0.00 0.00 5.28
7091 7337 3.786635 CTGAAAGGAACCATCTCTACGG 58.213 50.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.