Multiple sequence alignment - TraesCS3A01G244000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G244000 chr3A 100.000 3785 0 0 1 3785 457089563 457085779 0.000000e+00 6990
1 TraesCS3A01G244000 chr3D 96.655 2661 77 4 710 3368 346639532 346642182 0.000000e+00 4410
2 TraesCS3A01G244000 chr3D 89.733 711 66 6 1 706 542836162 542836870 0.000000e+00 902
3 TraesCS3A01G244000 chr3D 98.214 224 3 1 3369 3592 346642340 346642562 1.270000e-104 390
4 TraesCS3A01G244000 chr3B 93.082 2631 151 18 711 3323 446168720 446171337 0.000000e+00 3821
5 TraesCS3A01G244000 chr3B 89.101 367 33 5 3406 3768 446171458 446171821 2.070000e-122 449
6 TraesCS3A01G244000 chr5A 90.417 720 61 5 1 713 524397978 524398696 0.000000e+00 941
7 TraesCS3A01G244000 chr5D 90.282 710 64 3 1 706 238123643 238124351 0.000000e+00 924
8 TraesCS3A01G244000 chr6D 90.227 706 64 4 5 706 36286155 36286859 0.000000e+00 917
9 TraesCS3A01G244000 chr2D 89.718 710 68 4 1 706 417208551 417209259 0.000000e+00 902
10 TraesCS3A01G244000 chr2D 89.306 720 71 5 1 715 634061587 634060869 0.000000e+00 898
11 TraesCS3A01G244000 chr7A 89.496 714 70 4 1 710 47054255 47053543 0.000000e+00 898
12 TraesCS3A01G244000 chr7D 89.577 710 68 5 1 706 437422302 437423009 0.000000e+00 896
13 TraesCS3A01G244000 chr4D 89.718 710 62 6 1 706 130441468 130440766 0.000000e+00 896


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G244000 chr3A 457085779 457089563 3784 True 6990 6990 100.0000 1 3785 1 chr3A.!!$R1 3784
1 TraesCS3A01G244000 chr3D 346639532 346642562 3030 False 2400 4410 97.4345 710 3592 2 chr3D.!!$F2 2882
2 TraesCS3A01G244000 chr3D 542836162 542836870 708 False 902 902 89.7330 1 706 1 chr3D.!!$F1 705
3 TraesCS3A01G244000 chr3B 446168720 446171821 3101 False 2135 3821 91.0915 711 3768 2 chr3B.!!$F1 3057
4 TraesCS3A01G244000 chr5A 524397978 524398696 718 False 941 941 90.4170 1 713 1 chr5A.!!$F1 712
5 TraesCS3A01G244000 chr5D 238123643 238124351 708 False 924 924 90.2820 1 706 1 chr5D.!!$F1 705
6 TraesCS3A01G244000 chr6D 36286155 36286859 704 False 917 917 90.2270 5 706 1 chr6D.!!$F1 701
7 TraesCS3A01G244000 chr2D 417208551 417209259 708 False 902 902 89.7180 1 706 1 chr2D.!!$F1 705
8 TraesCS3A01G244000 chr2D 634060869 634061587 718 True 898 898 89.3060 1 715 1 chr2D.!!$R1 714
9 TraesCS3A01G244000 chr7A 47053543 47054255 712 True 898 898 89.4960 1 710 1 chr7A.!!$R1 709
10 TraesCS3A01G244000 chr7D 437422302 437423009 707 False 896 896 89.5770 1 706 1 chr7D.!!$F1 705
11 TraesCS3A01G244000 chr4D 130440766 130441468 702 True 896 896 89.7180 1 706 1 chr4D.!!$R1 705


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 384 0.321653 AGGTGGATCGTCAGTTTGGC 60.322 55.0 0.00 0.0 0.00 4.52 F
1650 1664 0.530650 CGATATGCGCCAAGTCTGGT 60.531 55.0 4.18 0.0 45.53 4.00 F
2601 2615 0.712979 TCAGGGACCTGATGAGGAGT 59.287 55.0 16.79 0.0 46.80 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2363 2377 0.034896 CTTGTACGCCTCCCACAGTT 59.965 55.0 0.0 0.0 0.0 3.16 R
2745 2759 1.323271 GCAGGTCGGGATCAGAGTCA 61.323 60.0 0.0 0.0 0.0 3.41 R
3611 3878 2.023888 ACTGACCCTACCTCTAGCACAT 60.024 50.0 0.0 0.0 0.0 3.21 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 85 5.411053 GCATGTTTTACTTCTCTTCTGCTCT 59.589 40.000 0.00 0.00 0.00 4.09
107 112 5.106118 TGTTGTTTGTGTGCTACTTTGCTTA 60.106 36.000 0.00 0.00 0.00 3.09
177 182 1.285280 TGCTAGGGCAAGTGGTATGT 58.715 50.000 0.00 0.00 46.36 2.29
209 214 1.134007 GTAAGGTCCCGGGGGTTTATG 60.134 57.143 23.50 0.00 36.47 1.90
244 249 1.753930 CCAGTGCATAAGTGGCATCA 58.246 50.000 0.00 0.00 42.56 3.07
274 279 3.009473 ACAGCACACATAGAGGGTTCAAT 59.991 43.478 0.00 0.00 0.00 2.57
289 294 1.500474 TCAATACTAGGCAGGCAGCT 58.500 50.000 0.81 0.00 44.79 4.24
319 324 0.390124 AGTACGAGTGGGTGCGAAAA 59.610 50.000 0.00 0.00 0.00 2.29
337 342 3.988379 AAACACGACAGCAATGTTGAT 57.012 38.095 3.62 0.00 36.69 2.57
343 348 3.002791 CGACAGCAATGTTGATAGTGGT 58.997 45.455 3.62 0.00 0.00 4.16
350 355 6.010219 AGCAATGTTGATAGTGGTAAGGTTT 58.990 36.000 0.00 0.00 0.00 3.27
351 356 7.120579 CAGCAATGTTGATAGTGGTAAGGTTTA 59.879 37.037 0.00 0.00 0.00 2.01
379 384 0.321653 AGGTGGATCGTCAGTTTGGC 60.322 55.000 0.00 0.00 0.00 4.52
412 417 4.410099 AGAACTTCATCATCTTTGCCCAA 58.590 39.130 0.00 0.00 0.00 4.12
415 420 5.750352 ACTTCATCATCTTTGCCCAATTT 57.250 34.783 0.00 0.00 0.00 1.82
420 425 5.593909 TCATCATCTTTGCCCAATTTATCGT 59.406 36.000 0.00 0.00 0.00 3.73
427 432 2.223456 TGCCCAATTTATCGTCATTGCG 60.223 45.455 0.00 0.00 0.00 4.85
460 465 1.831106 TGATGTGCTAGGTGTGGGTAG 59.169 52.381 0.00 0.00 0.00 3.18
463 471 3.006061 TGCTAGGTGTGGGTAGCAT 57.994 52.632 0.00 0.00 45.28 3.79
466 474 1.202580 GCTAGGTGTGGGTAGCATCAG 60.203 57.143 0.00 0.00 41.21 2.90
483 491 6.110411 GCATCAGCTAGGGTATAAGGTAAA 57.890 41.667 0.00 0.00 37.91 2.01
600 608 0.615331 CAGGGACACTACATGCAGGT 59.385 55.000 9.77 9.77 0.00 4.00
605 613 2.268298 GACACTACATGCAGGTAACCG 58.732 52.381 12.87 3.77 37.17 4.44
620 629 6.349033 GCAGGTAACCGAACAATTTACAGATT 60.349 38.462 0.00 0.00 37.17 2.40
632 641 8.718102 ACAATTTACAGATTGCGTATTAGAGT 57.282 30.769 0.00 0.00 39.97 3.24
644 653 5.468746 TGCGTATTAGAGTCTGTTTTTGCTT 59.531 36.000 1.86 0.00 0.00 3.91
650 659 5.500645 AGAGTCTGTTTTTGCTTAACCAC 57.499 39.130 0.00 0.00 0.00 4.16
651 660 4.947388 AGAGTCTGTTTTTGCTTAACCACA 59.053 37.500 0.00 0.00 0.00 4.17
679 688 5.643777 GGTTAAGAAGTGTATGTGATGCAGT 59.356 40.000 0.00 0.00 0.00 4.40
706 715 2.428491 TCACAACGACAACCAAACACT 58.572 42.857 0.00 0.00 0.00 3.55
834 844 3.788766 GCCGCCACTACAACTGCG 61.789 66.667 0.00 0.00 46.14 5.18
835 845 2.357034 CCGCCACTACAACTGCGT 60.357 61.111 0.00 0.00 45.18 5.24
838 848 1.866925 GCCACTACAACTGCGTTCC 59.133 57.895 0.00 0.00 0.00 3.62
941 952 1.885388 CAAACACCCACGCTGACGA 60.885 57.895 0.00 0.00 43.93 4.20
942 953 1.885850 AAACACCCACGCTGACGAC 60.886 57.895 0.00 0.00 43.93 4.34
943 954 3.802418 AACACCCACGCTGACGACC 62.802 63.158 0.00 0.00 43.93 4.79
1005 1019 3.063704 CCGCTGCCAGCAATGGAA 61.064 61.111 18.21 0.00 42.58 3.53
1309 1323 1.003839 CTTGTCCGTGGGCTGCTTA 60.004 57.895 0.00 0.00 0.00 3.09
1389 1403 1.138069 TCCGCTGTCAGTGTCTTTGAA 59.862 47.619 12.31 0.00 0.00 2.69
1495 1509 2.622064 ATTTGACGGTATGGAGAGGC 57.378 50.000 0.00 0.00 0.00 4.70
1518 1532 1.338674 ACATCCGCTTCGTGGAATTCA 60.339 47.619 7.93 0.00 45.75 2.57
1617 1631 3.350219 AGACCAAACGCTATCACCATT 57.650 42.857 0.00 0.00 0.00 3.16
1620 1634 3.936453 GACCAAACGCTATCACCATTACA 59.064 43.478 0.00 0.00 0.00 2.41
1623 1637 4.318760 CCAAACGCTATCACCATTACATCG 60.319 45.833 0.00 0.00 0.00 3.84
1626 1640 3.570975 ACGCTATCACCATTACATCGGTA 59.429 43.478 0.00 0.00 32.98 4.02
1650 1664 0.530650 CGATATGCGCCAAGTCTGGT 60.531 55.000 4.18 0.00 45.53 4.00
1671 1685 1.262683 GATCTTGATACTGGCAAGCGC 59.737 52.381 0.00 0.00 41.83 5.92
1698 1712 1.769026 CTCTGATCGGTGAGGAGGAA 58.231 55.000 0.42 0.00 0.00 3.36
1751 1765 8.628630 TTGATGGAAATGTATGTAAAGTGTCA 57.371 30.769 0.00 0.00 0.00 3.58
1783 1797 1.300697 GCACGTCGGGAGTTTGACT 60.301 57.895 0.00 0.00 32.93 3.41
1999 2013 2.826488 ACTATGCTGAGAACCAGAGGT 58.174 47.619 0.00 0.00 45.78 3.85
2028 2042 2.308690 ACGAGTTACCTAGGATCTGCC 58.691 52.381 17.98 0.00 0.00 4.85
2034 2048 5.477913 AGTTACCTAGGATCTGCCCTAATT 58.522 41.667 17.98 0.00 38.26 1.40
2071 2085 1.000396 GGGCATGTTGGAAGAGCCT 60.000 57.895 0.00 0.00 44.60 4.58
2363 2377 1.228398 TCCTGTGCAAATCCGGCAA 60.228 52.632 0.00 0.00 43.91 4.52
2601 2615 0.712979 TCAGGGACCTGATGAGGAGT 59.287 55.000 16.79 0.00 46.80 3.85
2824 2840 4.384056 CTGAGAGCTCTGTTTTTGGAAGA 58.616 43.478 23.91 0.00 0.00 2.87
2843 2859 5.406477 GGAAGAAACACAAAGCATTCCATTC 59.594 40.000 0.00 0.00 35.79 2.67
2949 2976 7.620880 TGACTCCATAAGTAGCTAAACAATGT 58.379 34.615 0.00 0.00 38.74 2.71
3260 3291 4.009370 AGCAGTTCTCCAAGTAACCTTC 57.991 45.455 0.00 0.00 0.00 3.46
3308 3339 9.233232 CACTAACCTTGACAAATTTACACTTTC 57.767 33.333 0.00 0.00 0.00 2.62
3566 3833 5.997746 GGATCGGAATTTGGAGAATGACATA 59.002 40.000 0.00 0.00 0.00 2.29
3610 3877 3.258372 TGATCGGAGCTGTTGTATATCCC 59.742 47.826 0.00 0.00 0.00 3.85
3611 3878 2.673258 TCGGAGCTGTTGTATATCCCA 58.327 47.619 0.00 0.00 0.00 4.37
3631 3898 2.145397 TGTGCTAGAGGTAGGGTCAG 57.855 55.000 0.00 0.00 0.00 3.51
3641 3908 2.840651 AGGTAGGGTCAGTCAAATCTGG 59.159 50.000 0.00 0.00 36.25 3.86
3673 3941 2.376695 AATATGGCTGCCTTGCTGAT 57.623 45.000 21.03 6.20 0.00 2.90
3682 3950 3.567164 GCTGCCTTGCTGATATGTTACAT 59.433 43.478 2.58 2.58 0.00 2.29
3685 3953 5.192176 TGCCTTGCTGATATGTTACATTGA 58.808 37.500 2.23 0.00 0.00 2.57
3696 3964 9.138062 TGATATGTTACATTGATTTTGTGCAAC 57.862 29.630 2.23 0.00 37.35 4.17
3722 3990 0.463833 CCCGCACAACCCCTATTCTC 60.464 60.000 0.00 0.00 0.00 2.87
3726 3994 1.559682 GCACAACCCCTATTCTCTCCA 59.440 52.381 0.00 0.00 0.00 3.86
3752 4020 8.367911 ACTCCTTTTTATTTTGTCCTGATTTCC 58.632 33.333 0.00 0.00 0.00 3.13
3762 4030 9.880157 ATTTTGTCCTGATTTCCAGAAAATATG 57.120 29.630 0.00 0.00 45.78 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 85 5.746245 GCAAAGTAGCACACAAACAACAATA 59.254 36.000 0.00 0.00 0.00 1.90
107 112 3.769739 TCAATGGAGCACACAAGTAGT 57.230 42.857 0.00 0.00 0.00 2.73
177 182 1.203052 GGACCTTACCGATGAACACGA 59.797 52.381 0.00 0.00 0.00 4.35
209 214 1.272147 ACTGGCTTCTTCCCATGAACC 60.272 52.381 0.00 0.00 0.00 3.62
244 249 5.512060 CCCTCTATGTGTGCTGTTGCTATAT 60.512 44.000 0.00 0.00 40.48 0.86
274 279 2.184533 TGTTTAGCTGCCTGCCTAGTA 58.815 47.619 0.00 0.00 44.23 1.82
289 294 3.194116 CCCACTCGTACTAGGCTTGTTTA 59.806 47.826 6.96 0.00 0.00 2.01
298 303 0.806868 TTCGCACCCACTCGTACTAG 59.193 55.000 0.00 0.00 0.00 2.57
301 306 0.509929 GTTTTCGCACCCACTCGTAC 59.490 55.000 0.00 0.00 0.00 3.67
303 308 1.153329 TGTTTTCGCACCCACTCGT 60.153 52.632 0.00 0.00 0.00 4.18
319 324 3.433274 CACTATCAACATTGCTGTCGTGT 59.567 43.478 0.00 0.00 33.36 4.49
337 342 6.464749 CCTTGACACCTTAAACCTTACCACTA 60.465 42.308 0.00 0.00 0.00 2.74
343 348 4.412858 TCCACCTTGACACCTTAAACCTTA 59.587 41.667 0.00 0.00 0.00 2.69
350 355 2.232941 GACGATCCACCTTGACACCTTA 59.767 50.000 0.00 0.00 0.00 2.69
351 356 1.002087 GACGATCCACCTTGACACCTT 59.998 52.381 0.00 0.00 0.00 3.50
406 411 2.223456 CGCAATGACGATAAATTGGGCA 60.223 45.455 0.00 0.00 39.08 5.36
412 417 2.032054 CAGCACCGCAATGACGATAAAT 59.968 45.455 0.00 0.00 34.06 1.40
415 420 0.108377 ACAGCACCGCAATGACGATA 60.108 50.000 0.00 0.00 34.06 2.92
420 425 3.364441 GCCACAGCACCGCAATGA 61.364 61.111 0.00 0.00 39.53 2.57
427 432 2.260869 ACATCAACGCCACAGCACC 61.261 57.895 0.00 0.00 39.83 5.01
442 447 0.541863 GCTACCCACACCTAGCACAT 59.458 55.000 0.00 0.00 36.22 3.21
460 465 5.740290 TTACCTTATACCCTAGCTGATGC 57.260 43.478 0.00 0.00 40.05 3.91
463 471 5.959594 TGTGTTTACCTTATACCCTAGCTGA 59.040 40.000 0.00 0.00 0.00 4.26
466 474 6.408869 TGTTGTGTTTACCTTATACCCTAGC 58.591 40.000 0.00 0.00 0.00 3.42
475 483 4.451774 GGCGTACATGTTGTGTTTACCTTA 59.548 41.667 2.30 0.00 42.29 2.69
483 491 1.996898 CATACGGCGTACATGTTGTGT 59.003 47.619 23.50 0.00 44.95 3.72
600 608 5.179742 ACGCAATCTGTAAATTGTTCGGTTA 59.820 36.000 0.00 0.00 38.60 2.85
605 613 9.638300 CTCTAATACGCAATCTGTAAATTGTTC 57.362 33.333 0.00 0.00 38.60 3.18
620 629 4.994852 AGCAAAAACAGACTCTAATACGCA 59.005 37.500 0.00 0.00 0.00 5.24
632 641 4.142271 CCAGTGTGGTTAAGCAAAAACAGA 60.142 41.667 9.30 0.00 31.35 3.41
644 653 4.710324 CACTTCTTAACCCAGTGTGGTTA 58.290 43.478 15.35 15.35 46.70 2.85
650 659 5.547465 TCACATACACTTCTTAACCCAGTG 58.453 41.667 0.00 0.00 43.12 3.66
651 660 5.818678 TCACATACACTTCTTAACCCAGT 57.181 39.130 0.00 0.00 0.00 4.00
659 668 6.369890 CAGTTACTGCATCACATACACTTCTT 59.630 38.462 0.00 0.00 0.00 2.52
679 688 3.597255 TGGTTGTCGTTGTGAACAGTTA 58.403 40.909 0.00 0.00 0.00 2.24
706 715 1.115467 GCTGCTAGACTGCTAGGGAA 58.885 55.000 0.00 0.00 43.54 3.97
834 844 0.234884 GTTATATGGCAGCGCGGAAC 59.765 55.000 13.03 3.49 0.00 3.62
835 845 0.105964 AGTTATATGGCAGCGCGGAA 59.894 50.000 13.03 0.00 0.00 4.30
838 848 1.070577 GTTCAGTTATATGGCAGCGCG 60.071 52.381 0.00 0.00 0.00 6.86
844 854 6.314400 TCGGTTAACTTGTTCAGTTATATGGC 59.686 38.462 5.42 0.00 45.65 4.40
992 1006 2.681064 GGGCTTCCATTGCTGGCA 60.681 61.111 0.00 0.00 42.80 4.92
1005 1019 3.394836 GTCTTGAGGAGGCGGGCT 61.395 66.667 2.69 2.69 0.00 5.19
1219 1233 2.158519 ACGACTTGAAAACAAGGGGGAT 60.159 45.455 13.25 0.00 36.55 3.85
1224 1238 1.741993 CGCACGACTTGAAAACAAGG 58.258 50.000 13.25 1.15 36.55 3.61
1309 1323 1.421268 TGTCAGCACAAAGACATCCCT 59.579 47.619 0.00 0.00 39.65 4.20
1371 1385 2.473816 TCTTCAAAGACACTGACAGCG 58.526 47.619 1.25 0.00 0.00 5.18
1374 1388 4.060900 GCATCTCTTCAAAGACACTGACA 58.939 43.478 0.00 0.00 0.00 3.58
1389 1403 0.755686 GATCCTTGACCGGCATCTCT 59.244 55.000 0.00 0.00 0.00 3.10
1518 1532 3.198409 TGAGCATAACAGGCGATCATT 57.802 42.857 0.00 0.00 36.08 2.57
1617 1631 4.325204 GCGCATATCGAAAATACCGATGTA 59.675 41.667 0.30 0.00 45.14 2.29
1620 1634 2.671396 GGCGCATATCGAAAATACCGAT 59.329 45.455 10.83 0.00 46.82 4.18
1623 1637 3.250040 ACTTGGCGCATATCGAAAATACC 59.750 43.478 10.83 0.00 41.67 2.73
1626 1640 3.002656 CAGACTTGGCGCATATCGAAAAT 59.997 43.478 10.83 0.00 41.67 1.82
1650 1664 2.554142 CGCTTGCCAGTATCAAGATCA 58.446 47.619 6.89 0.00 42.52 2.92
1671 1685 0.249073 CACCGATCAGAGCCCTTACG 60.249 60.000 0.00 0.00 0.00 3.18
1698 1712 2.416547 GTGCACTATCACGTTCTGCAAT 59.583 45.455 10.32 0.00 39.47 3.56
1751 1765 2.801388 CGTGCATCGTCGATAGCAT 58.199 52.632 24.76 0.00 39.43 3.79
1783 1797 1.406898 GACATCTCTCTGCGACATCCA 59.593 52.381 0.00 0.00 0.00 3.41
2028 2042 4.635765 CACCTGGTGTACATGTCAATTAGG 59.364 45.833 18.76 9.11 0.00 2.69
2034 2048 0.320334 CGCACCTGGTGTACATGTCA 60.320 55.000 26.48 0.00 35.75 3.58
2071 2085 0.904865 ATCCGGCTGAAGACACTCCA 60.905 55.000 0.00 0.00 0.00 3.86
2100 2114 2.356844 GGAGTTCCAAGTGATAACCCCC 60.357 54.545 0.00 0.00 35.64 5.40
2186 2200 2.114411 GCTGGACCCCGTTTTCCA 59.886 61.111 0.00 0.00 39.72 3.53
2363 2377 0.034896 CTTGTACGCCTCCCACAGTT 59.965 55.000 0.00 0.00 0.00 3.16
2601 2615 2.035961 AGACAGCTTCTGCACGTTCTTA 59.964 45.455 0.00 0.00 42.74 2.10
2745 2759 1.323271 GCAGGTCGGGATCAGAGTCA 61.323 60.000 0.00 0.00 0.00 3.41
2819 2833 4.320608 TGGAATGCTTTGTGTTTCTTCC 57.679 40.909 0.00 0.00 33.02 3.46
2824 2840 6.548441 CAATGAATGGAATGCTTTGTGTTT 57.452 33.333 0.00 0.00 33.51 2.83
2843 2859 2.749044 AGTGCAGCTCGCCCAATG 60.749 61.111 5.82 0.00 41.33 2.82
2949 2976 5.182190 TCACGGCTTTGTAATATTTCTGCAA 59.818 36.000 0.00 0.00 0.00 4.08
3189 3220 2.418368 TTGCCCAAATGCTATCTCGT 57.582 45.000 0.00 0.00 0.00 4.18
3260 3291 5.049167 TGCTTCCTAAAGTGCAAATTTGTG 58.951 37.500 19.03 0.00 33.75 3.33
3308 3339 7.253750 GCATATTTGTCAAGGTTATTGCTTTCG 60.254 37.037 0.00 0.00 0.00 3.46
3483 3749 4.077188 GAACTCTGCGCACGGTGC 62.077 66.667 22.78 22.78 40.69 5.01
3610 3877 2.363680 CTGACCCTACCTCTAGCACATG 59.636 54.545 0.00 0.00 0.00 3.21
3611 3878 2.023888 ACTGACCCTACCTCTAGCACAT 60.024 50.000 0.00 0.00 0.00 3.21
3631 3898 5.705609 TTTGCTAAGGTTCCAGATTTGAC 57.294 39.130 0.00 0.00 0.00 3.18
3641 3908 4.805719 GCAGCCATATTTTTGCTAAGGTTC 59.194 41.667 0.00 0.00 33.16 3.62
3673 3941 9.838975 CTAGTTGCACAAAATCAATGTAACATA 57.161 29.630 7.09 0.00 40.23 2.29
3696 3964 2.332654 GGGTTGTGCGGGCAACTAG 61.333 63.158 15.01 0.00 45.69 2.57
3708 3976 3.108376 GAGTGGAGAGAATAGGGGTTGT 58.892 50.000 0.00 0.00 0.00 3.32
3716 3984 9.807921 ACAAAATAAAAAGGAGTGGAGAGAATA 57.192 29.630 0.00 0.00 0.00 1.75
3722 3990 6.490040 TCAGGACAAAATAAAAAGGAGTGGAG 59.510 38.462 0.00 0.00 0.00 3.86
3726 3994 8.367911 GGAAATCAGGACAAAATAAAAAGGAGT 58.632 33.333 0.00 0.00 0.00 3.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.