Multiple sequence alignment - TraesCS3A01G244000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3A01G244000
chr3A
100.000
3785
0
0
1
3785
457089563
457085779
0.000000e+00
6990
1
TraesCS3A01G244000
chr3D
96.655
2661
77
4
710
3368
346639532
346642182
0.000000e+00
4410
2
TraesCS3A01G244000
chr3D
89.733
711
66
6
1
706
542836162
542836870
0.000000e+00
902
3
TraesCS3A01G244000
chr3D
98.214
224
3
1
3369
3592
346642340
346642562
1.270000e-104
390
4
TraesCS3A01G244000
chr3B
93.082
2631
151
18
711
3323
446168720
446171337
0.000000e+00
3821
5
TraesCS3A01G244000
chr3B
89.101
367
33
5
3406
3768
446171458
446171821
2.070000e-122
449
6
TraesCS3A01G244000
chr5A
90.417
720
61
5
1
713
524397978
524398696
0.000000e+00
941
7
TraesCS3A01G244000
chr5D
90.282
710
64
3
1
706
238123643
238124351
0.000000e+00
924
8
TraesCS3A01G244000
chr6D
90.227
706
64
4
5
706
36286155
36286859
0.000000e+00
917
9
TraesCS3A01G244000
chr2D
89.718
710
68
4
1
706
417208551
417209259
0.000000e+00
902
10
TraesCS3A01G244000
chr2D
89.306
720
71
5
1
715
634061587
634060869
0.000000e+00
898
11
TraesCS3A01G244000
chr7A
89.496
714
70
4
1
710
47054255
47053543
0.000000e+00
898
12
TraesCS3A01G244000
chr7D
89.577
710
68
5
1
706
437422302
437423009
0.000000e+00
896
13
TraesCS3A01G244000
chr4D
89.718
710
62
6
1
706
130441468
130440766
0.000000e+00
896
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3A01G244000
chr3A
457085779
457089563
3784
True
6990
6990
100.0000
1
3785
1
chr3A.!!$R1
3784
1
TraesCS3A01G244000
chr3D
346639532
346642562
3030
False
2400
4410
97.4345
710
3592
2
chr3D.!!$F2
2882
2
TraesCS3A01G244000
chr3D
542836162
542836870
708
False
902
902
89.7330
1
706
1
chr3D.!!$F1
705
3
TraesCS3A01G244000
chr3B
446168720
446171821
3101
False
2135
3821
91.0915
711
3768
2
chr3B.!!$F1
3057
4
TraesCS3A01G244000
chr5A
524397978
524398696
718
False
941
941
90.4170
1
713
1
chr5A.!!$F1
712
5
TraesCS3A01G244000
chr5D
238123643
238124351
708
False
924
924
90.2820
1
706
1
chr5D.!!$F1
705
6
TraesCS3A01G244000
chr6D
36286155
36286859
704
False
917
917
90.2270
5
706
1
chr6D.!!$F1
701
7
TraesCS3A01G244000
chr2D
417208551
417209259
708
False
902
902
89.7180
1
706
1
chr2D.!!$F1
705
8
TraesCS3A01G244000
chr2D
634060869
634061587
718
True
898
898
89.3060
1
715
1
chr2D.!!$R1
714
9
TraesCS3A01G244000
chr7A
47053543
47054255
712
True
898
898
89.4960
1
710
1
chr7A.!!$R1
709
10
TraesCS3A01G244000
chr7D
437422302
437423009
707
False
896
896
89.5770
1
706
1
chr7D.!!$F1
705
11
TraesCS3A01G244000
chr4D
130440766
130441468
702
True
896
896
89.7180
1
706
1
chr4D.!!$R1
705
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
379
384
0.321653
AGGTGGATCGTCAGTTTGGC
60.322
55.0
0.00
0.0
0.00
4.52
F
1650
1664
0.530650
CGATATGCGCCAAGTCTGGT
60.531
55.0
4.18
0.0
45.53
4.00
F
2601
2615
0.712979
TCAGGGACCTGATGAGGAGT
59.287
55.0
16.79
0.0
46.80
3.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2363
2377
0.034896
CTTGTACGCCTCCCACAGTT
59.965
55.0
0.0
0.0
0.0
3.16
R
2745
2759
1.323271
GCAGGTCGGGATCAGAGTCA
61.323
60.0
0.0
0.0
0.0
3.41
R
3611
3878
2.023888
ACTGACCCTACCTCTAGCACAT
60.024
50.0
0.0
0.0
0.0
3.21
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
80
85
5.411053
GCATGTTTTACTTCTCTTCTGCTCT
59.589
40.000
0.00
0.00
0.00
4.09
107
112
5.106118
TGTTGTTTGTGTGCTACTTTGCTTA
60.106
36.000
0.00
0.00
0.00
3.09
177
182
1.285280
TGCTAGGGCAAGTGGTATGT
58.715
50.000
0.00
0.00
46.36
2.29
209
214
1.134007
GTAAGGTCCCGGGGGTTTATG
60.134
57.143
23.50
0.00
36.47
1.90
244
249
1.753930
CCAGTGCATAAGTGGCATCA
58.246
50.000
0.00
0.00
42.56
3.07
274
279
3.009473
ACAGCACACATAGAGGGTTCAAT
59.991
43.478
0.00
0.00
0.00
2.57
289
294
1.500474
TCAATACTAGGCAGGCAGCT
58.500
50.000
0.81
0.00
44.79
4.24
319
324
0.390124
AGTACGAGTGGGTGCGAAAA
59.610
50.000
0.00
0.00
0.00
2.29
337
342
3.988379
AAACACGACAGCAATGTTGAT
57.012
38.095
3.62
0.00
36.69
2.57
343
348
3.002791
CGACAGCAATGTTGATAGTGGT
58.997
45.455
3.62
0.00
0.00
4.16
350
355
6.010219
AGCAATGTTGATAGTGGTAAGGTTT
58.990
36.000
0.00
0.00
0.00
3.27
351
356
7.120579
CAGCAATGTTGATAGTGGTAAGGTTTA
59.879
37.037
0.00
0.00
0.00
2.01
379
384
0.321653
AGGTGGATCGTCAGTTTGGC
60.322
55.000
0.00
0.00
0.00
4.52
412
417
4.410099
AGAACTTCATCATCTTTGCCCAA
58.590
39.130
0.00
0.00
0.00
4.12
415
420
5.750352
ACTTCATCATCTTTGCCCAATTT
57.250
34.783
0.00
0.00
0.00
1.82
420
425
5.593909
TCATCATCTTTGCCCAATTTATCGT
59.406
36.000
0.00
0.00
0.00
3.73
427
432
2.223456
TGCCCAATTTATCGTCATTGCG
60.223
45.455
0.00
0.00
0.00
4.85
460
465
1.831106
TGATGTGCTAGGTGTGGGTAG
59.169
52.381
0.00
0.00
0.00
3.18
463
471
3.006061
TGCTAGGTGTGGGTAGCAT
57.994
52.632
0.00
0.00
45.28
3.79
466
474
1.202580
GCTAGGTGTGGGTAGCATCAG
60.203
57.143
0.00
0.00
41.21
2.90
483
491
6.110411
GCATCAGCTAGGGTATAAGGTAAA
57.890
41.667
0.00
0.00
37.91
2.01
600
608
0.615331
CAGGGACACTACATGCAGGT
59.385
55.000
9.77
9.77
0.00
4.00
605
613
2.268298
GACACTACATGCAGGTAACCG
58.732
52.381
12.87
3.77
37.17
4.44
620
629
6.349033
GCAGGTAACCGAACAATTTACAGATT
60.349
38.462
0.00
0.00
37.17
2.40
632
641
8.718102
ACAATTTACAGATTGCGTATTAGAGT
57.282
30.769
0.00
0.00
39.97
3.24
644
653
5.468746
TGCGTATTAGAGTCTGTTTTTGCTT
59.531
36.000
1.86
0.00
0.00
3.91
650
659
5.500645
AGAGTCTGTTTTTGCTTAACCAC
57.499
39.130
0.00
0.00
0.00
4.16
651
660
4.947388
AGAGTCTGTTTTTGCTTAACCACA
59.053
37.500
0.00
0.00
0.00
4.17
679
688
5.643777
GGTTAAGAAGTGTATGTGATGCAGT
59.356
40.000
0.00
0.00
0.00
4.40
706
715
2.428491
TCACAACGACAACCAAACACT
58.572
42.857
0.00
0.00
0.00
3.55
834
844
3.788766
GCCGCCACTACAACTGCG
61.789
66.667
0.00
0.00
46.14
5.18
835
845
2.357034
CCGCCACTACAACTGCGT
60.357
61.111
0.00
0.00
45.18
5.24
838
848
1.866925
GCCACTACAACTGCGTTCC
59.133
57.895
0.00
0.00
0.00
3.62
941
952
1.885388
CAAACACCCACGCTGACGA
60.885
57.895
0.00
0.00
43.93
4.20
942
953
1.885850
AAACACCCACGCTGACGAC
60.886
57.895
0.00
0.00
43.93
4.34
943
954
3.802418
AACACCCACGCTGACGACC
62.802
63.158
0.00
0.00
43.93
4.79
1005
1019
3.063704
CCGCTGCCAGCAATGGAA
61.064
61.111
18.21
0.00
42.58
3.53
1309
1323
1.003839
CTTGTCCGTGGGCTGCTTA
60.004
57.895
0.00
0.00
0.00
3.09
1389
1403
1.138069
TCCGCTGTCAGTGTCTTTGAA
59.862
47.619
12.31
0.00
0.00
2.69
1495
1509
2.622064
ATTTGACGGTATGGAGAGGC
57.378
50.000
0.00
0.00
0.00
4.70
1518
1532
1.338674
ACATCCGCTTCGTGGAATTCA
60.339
47.619
7.93
0.00
45.75
2.57
1617
1631
3.350219
AGACCAAACGCTATCACCATT
57.650
42.857
0.00
0.00
0.00
3.16
1620
1634
3.936453
GACCAAACGCTATCACCATTACA
59.064
43.478
0.00
0.00
0.00
2.41
1623
1637
4.318760
CCAAACGCTATCACCATTACATCG
60.319
45.833
0.00
0.00
0.00
3.84
1626
1640
3.570975
ACGCTATCACCATTACATCGGTA
59.429
43.478
0.00
0.00
32.98
4.02
1650
1664
0.530650
CGATATGCGCCAAGTCTGGT
60.531
55.000
4.18
0.00
45.53
4.00
1671
1685
1.262683
GATCTTGATACTGGCAAGCGC
59.737
52.381
0.00
0.00
41.83
5.92
1698
1712
1.769026
CTCTGATCGGTGAGGAGGAA
58.231
55.000
0.42
0.00
0.00
3.36
1751
1765
8.628630
TTGATGGAAATGTATGTAAAGTGTCA
57.371
30.769
0.00
0.00
0.00
3.58
1783
1797
1.300697
GCACGTCGGGAGTTTGACT
60.301
57.895
0.00
0.00
32.93
3.41
1999
2013
2.826488
ACTATGCTGAGAACCAGAGGT
58.174
47.619
0.00
0.00
45.78
3.85
2028
2042
2.308690
ACGAGTTACCTAGGATCTGCC
58.691
52.381
17.98
0.00
0.00
4.85
2034
2048
5.477913
AGTTACCTAGGATCTGCCCTAATT
58.522
41.667
17.98
0.00
38.26
1.40
2071
2085
1.000396
GGGCATGTTGGAAGAGCCT
60.000
57.895
0.00
0.00
44.60
4.58
2363
2377
1.228398
TCCTGTGCAAATCCGGCAA
60.228
52.632
0.00
0.00
43.91
4.52
2601
2615
0.712979
TCAGGGACCTGATGAGGAGT
59.287
55.000
16.79
0.00
46.80
3.85
2824
2840
4.384056
CTGAGAGCTCTGTTTTTGGAAGA
58.616
43.478
23.91
0.00
0.00
2.87
2843
2859
5.406477
GGAAGAAACACAAAGCATTCCATTC
59.594
40.000
0.00
0.00
35.79
2.67
2949
2976
7.620880
TGACTCCATAAGTAGCTAAACAATGT
58.379
34.615
0.00
0.00
38.74
2.71
3260
3291
4.009370
AGCAGTTCTCCAAGTAACCTTC
57.991
45.455
0.00
0.00
0.00
3.46
3308
3339
9.233232
CACTAACCTTGACAAATTTACACTTTC
57.767
33.333
0.00
0.00
0.00
2.62
3566
3833
5.997746
GGATCGGAATTTGGAGAATGACATA
59.002
40.000
0.00
0.00
0.00
2.29
3610
3877
3.258372
TGATCGGAGCTGTTGTATATCCC
59.742
47.826
0.00
0.00
0.00
3.85
3611
3878
2.673258
TCGGAGCTGTTGTATATCCCA
58.327
47.619
0.00
0.00
0.00
4.37
3631
3898
2.145397
TGTGCTAGAGGTAGGGTCAG
57.855
55.000
0.00
0.00
0.00
3.51
3641
3908
2.840651
AGGTAGGGTCAGTCAAATCTGG
59.159
50.000
0.00
0.00
36.25
3.86
3673
3941
2.376695
AATATGGCTGCCTTGCTGAT
57.623
45.000
21.03
6.20
0.00
2.90
3682
3950
3.567164
GCTGCCTTGCTGATATGTTACAT
59.433
43.478
2.58
2.58
0.00
2.29
3685
3953
5.192176
TGCCTTGCTGATATGTTACATTGA
58.808
37.500
2.23
0.00
0.00
2.57
3696
3964
9.138062
TGATATGTTACATTGATTTTGTGCAAC
57.862
29.630
2.23
0.00
37.35
4.17
3722
3990
0.463833
CCCGCACAACCCCTATTCTC
60.464
60.000
0.00
0.00
0.00
2.87
3726
3994
1.559682
GCACAACCCCTATTCTCTCCA
59.440
52.381
0.00
0.00
0.00
3.86
3752
4020
8.367911
ACTCCTTTTTATTTTGTCCTGATTTCC
58.632
33.333
0.00
0.00
0.00
3.13
3762
4030
9.880157
ATTTTGTCCTGATTTCCAGAAAATATG
57.120
29.630
0.00
0.00
45.78
1.78
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
80
85
5.746245
GCAAAGTAGCACACAAACAACAATA
59.254
36.000
0.00
0.00
0.00
1.90
107
112
3.769739
TCAATGGAGCACACAAGTAGT
57.230
42.857
0.00
0.00
0.00
2.73
177
182
1.203052
GGACCTTACCGATGAACACGA
59.797
52.381
0.00
0.00
0.00
4.35
209
214
1.272147
ACTGGCTTCTTCCCATGAACC
60.272
52.381
0.00
0.00
0.00
3.62
244
249
5.512060
CCCTCTATGTGTGCTGTTGCTATAT
60.512
44.000
0.00
0.00
40.48
0.86
274
279
2.184533
TGTTTAGCTGCCTGCCTAGTA
58.815
47.619
0.00
0.00
44.23
1.82
289
294
3.194116
CCCACTCGTACTAGGCTTGTTTA
59.806
47.826
6.96
0.00
0.00
2.01
298
303
0.806868
TTCGCACCCACTCGTACTAG
59.193
55.000
0.00
0.00
0.00
2.57
301
306
0.509929
GTTTTCGCACCCACTCGTAC
59.490
55.000
0.00
0.00
0.00
3.67
303
308
1.153329
TGTTTTCGCACCCACTCGT
60.153
52.632
0.00
0.00
0.00
4.18
319
324
3.433274
CACTATCAACATTGCTGTCGTGT
59.567
43.478
0.00
0.00
33.36
4.49
337
342
6.464749
CCTTGACACCTTAAACCTTACCACTA
60.465
42.308
0.00
0.00
0.00
2.74
343
348
4.412858
TCCACCTTGACACCTTAAACCTTA
59.587
41.667
0.00
0.00
0.00
2.69
350
355
2.232941
GACGATCCACCTTGACACCTTA
59.767
50.000
0.00
0.00
0.00
2.69
351
356
1.002087
GACGATCCACCTTGACACCTT
59.998
52.381
0.00
0.00
0.00
3.50
406
411
2.223456
CGCAATGACGATAAATTGGGCA
60.223
45.455
0.00
0.00
39.08
5.36
412
417
2.032054
CAGCACCGCAATGACGATAAAT
59.968
45.455
0.00
0.00
34.06
1.40
415
420
0.108377
ACAGCACCGCAATGACGATA
60.108
50.000
0.00
0.00
34.06
2.92
420
425
3.364441
GCCACAGCACCGCAATGA
61.364
61.111
0.00
0.00
39.53
2.57
427
432
2.260869
ACATCAACGCCACAGCACC
61.261
57.895
0.00
0.00
39.83
5.01
442
447
0.541863
GCTACCCACACCTAGCACAT
59.458
55.000
0.00
0.00
36.22
3.21
460
465
5.740290
TTACCTTATACCCTAGCTGATGC
57.260
43.478
0.00
0.00
40.05
3.91
463
471
5.959594
TGTGTTTACCTTATACCCTAGCTGA
59.040
40.000
0.00
0.00
0.00
4.26
466
474
6.408869
TGTTGTGTTTACCTTATACCCTAGC
58.591
40.000
0.00
0.00
0.00
3.42
475
483
4.451774
GGCGTACATGTTGTGTTTACCTTA
59.548
41.667
2.30
0.00
42.29
2.69
483
491
1.996898
CATACGGCGTACATGTTGTGT
59.003
47.619
23.50
0.00
44.95
3.72
600
608
5.179742
ACGCAATCTGTAAATTGTTCGGTTA
59.820
36.000
0.00
0.00
38.60
2.85
605
613
9.638300
CTCTAATACGCAATCTGTAAATTGTTC
57.362
33.333
0.00
0.00
38.60
3.18
620
629
4.994852
AGCAAAAACAGACTCTAATACGCA
59.005
37.500
0.00
0.00
0.00
5.24
632
641
4.142271
CCAGTGTGGTTAAGCAAAAACAGA
60.142
41.667
9.30
0.00
31.35
3.41
644
653
4.710324
CACTTCTTAACCCAGTGTGGTTA
58.290
43.478
15.35
15.35
46.70
2.85
650
659
5.547465
TCACATACACTTCTTAACCCAGTG
58.453
41.667
0.00
0.00
43.12
3.66
651
660
5.818678
TCACATACACTTCTTAACCCAGT
57.181
39.130
0.00
0.00
0.00
4.00
659
668
6.369890
CAGTTACTGCATCACATACACTTCTT
59.630
38.462
0.00
0.00
0.00
2.52
679
688
3.597255
TGGTTGTCGTTGTGAACAGTTA
58.403
40.909
0.00
0.00
0.00
2.24
706
715
1.115467
GCTGCTAGACTGCTAGGGAA
58.885
55.000
0.00
0.00
43.54
3.97
834
844
0.234884
GTTATATGGCAGCGCGGAAC
59.765
55.000
13.03
3.49
0.00
3.62
835
845
0.105964
AGTTATATGGCAGCGCGGAA
59.894
50.000
13.03
0.00
0.00
4.30
838
848
1.070577
GTTCAGTTATATGGCAGCGCG
60.071
52.381
0.00
0.00
0.00
6.86
844
854
6.314400
TCGGTTAACTTGTTCAGTTATATGGC
59.686
38.462
5.42
0.00
45.65
4.40
992
1006
2.681064
GGGCTTCCATTGCTGGCA
60.681
61.111
0.00
0.00
42.80
4.92
1005
1019
3.394836
GTCTTGAGGAGGCGGGCT
61.395
66.667
2.69
2.69
0.00
5.19
1219
1233
2.158519
ACGACTTGAAAACAAGGGGGAT
60.159
45.455
13.25
0.00
36.55
3.85
1224
1238
1.741993
CGCACGACTTGAAAACAAGG
58.258
50.000
13.25
1.15
36.55
3.61
1309
1323
1.421268
TGTCAGCACAAAGACATCCCT
59.579
47.619
0.00
0.00
39.65
4.20
1371
1385
2.473816
TCTTCAAAGACACTGACAGCG
58.526
47.619
1.25
0.00
0.00
5.18
1374
1388
4.060900
GCATCTCTTCAAAGACACTGACA
58.939
43.478
0.00
0.00
0.00
3.58
1389
1403
0.755686
GATCCTTGACCGGCATCTCT
59.244
55.000
0.00
0.00
0.00
3.10
1518
1532
3.198409
TGAGCATAACAGGCGATCATT
57.802
42.857
0.00
0.00
36.08
2.57
1617
1631
4.325204
GCGCATATCGAAAATACCGATGTA
59.675
41.667
0.30
0.00
45.14
2.29
1620
1634
2.671396
GGCGCATATCGAAAATACCGAT
59.329
45.455
10.83
0.00
46.82
4.18
1623
1637
3.250040
ACTTGGCGCATATCGAAAATACC
59.750
43.478
10.83
0.00
41.67
2.73
1626
1640
3.002656
CAGACTTGGCGCATATCGAAAAT
59.997
43.478
10.83
0.00
41.67
1.82
1650
1664
2.554142
CGCTTGCCAGTATCAAGATCA
58.446
47.619
6.89
0.00
42.52
2.92
1671
1685
0.249073
CACCGATCAGAGCCCTTACG
60.249
60.000
0.00
0.00
0.00
3.18
1698
1712
2.416547
GTGCACTATCACGTTCTGCAAT
59.583
45.455
10.32
0.00
39.47
3.56
1751
1765
2.801388
CGTGCATCGTCGATAGCAT
58.199
52.632
24.76
0.00
39.43
3.79
1783
1797
1.406898
GACATCTCTCTGCGACATCCA
59.593
52.381
0.00
0.00
0.00
3.41
2028
2042
4.635765
CACCTGGTGTACATGTCAATTAGG
59.364
45.833
18.76
9.11
0.00
2.69
2034
2048
0.320334
CGCACCTGGTGTACATGTCA
60.320
55.000
26.48
0.00
35.75
3.58
2071
2085
0.904865
ATCCGGCTGAAGACACTCCA
60.905
55.000
0.00
0.00
0.00
3.86
2100
2114
2.356844
GGAGTTCCAAGTGATAACCCCC
60.357
54.545
0.00
0.00
35.64
5.40
2186
2200
2.114411
GCTGGACCCCGTTTTCCA
59.886
61.111
0.00
0.00
39.72
3.53
2363
2377
0.034896
CTTGTACGCCTCCCACAGTT
59.965
55.000
0.00
0.00
0.00
3.16
2601
2615
2.035961
AGACAGCTTCTGCACGTTCTTA
59.964
45.455
0.00
0.00
42.74
2.10
2745
2759
1.323271
GCAGGTCGGGATCAGAGTCA
61.323
60.000
0.00
0.00
0.00
3.41
2819
2833
4.320608
TGGAATGCTTTGTGTTTCTTCC
57.679
40.909
0.00
0.00
33.02
3.46
2824
2840
6.548441
CAATGAATGGAATGCTTTGTGTTT
57.452
33.333
0.00
0.00
33.51
2.83
2843
2859
2.749044
AGTGCAGCTCGCCCAATG
60.749
61.111
5.82
0.00
41.33
2.82
2949
2976
5.182190
TCACGGCTTTGTAATATTTCTGCAA
59.818
36.000
0.00
0.00
0.00
4.08
3189
3220
2.418368
TTGCCCAAATGCTATCTCGT
57.582
45.000
0.00
0.00
0.00
4.18
3260
3291
5.049167
TGCTTCCTAAAGTGCAAATTTGTG
58.951
37.500
19.03
0.00
33.75
3.33
3308
3339
7.253750
GCATATTTGTCAAGGTTATTGCTTTCG
60.254
37.037
0.00
0.00
0.00
3.46
3483
3749
4.077188
GAACTCTGCGCACGGTGC
62.077
66.667
22.78
22.78
40.69
5.01
3610
3877
2.363680
CTGACCCTACCTCTAGCACATG
59.636
54.545
0.00
0.00
0.00
3.21
3611
3878
2.023888
ACTGACCCTACCTCTAGCACAT
60.024
50.000
0.00
0.00
0.00
3.21
3631
3898
5.705609
TTTGCTAAGGTTCCAGATTTGAC
57.294
39.130
0.00
0.00
0.00
3.18
3641
3908
4.805719
GCAGCCATATTTTTGCTAAGGTTC
59.194
41.667
0.00
0.00
33.16
3.62
3673
3941
9.838975
CTAGTTGCACAAAATCAATGTAACATA
57.161
29.630
7.09
0.00
40.23
2.29
3696
3964
2.332654
GGGTTGTGCGGGCAACTAG
61.333
63.158
15.01
0.00
45.69
2.57
3708
3976
3.108376
GAGTGGAGAGAATAGGGGTTGT
58.892
50.000
0.00
0.00
0.00
3.32
3716
3984
9.807921
ACAAAATAAAAAGGAGTGGAGAGAATA
57.192
29.630
0.00
0.00
0.00
1.75
3722
3990
6.490040
TCAGGACAAAATAAAAAGGAGTGGAG
59.510
38.462
0.00
0.00
0.00
3.86
3726
3994
8.367911
GGAAATCAGGACAAAATAAAAAGGAGT
58.632
33.333
0.00
0.00
0.00
3.85
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.