AutoCloner

Multiple sequence alignment - TraesCS3A01G243400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G243400	chr3A	100.000	2273	0	0	1	2273	456805015	456807287	0.000000e+00	4198
1	TraesCS3A01G243400	chr3A	97.842	139	2	1	2136	2273	733263348	733263210	2.920000e-59	239
2	TraesCS3A01G243400	chr6A	97.698	1303	26	1	1	1303	486382698	486383996	0.000000e+00	2237
3	TraesCS3A01G243400	chr6A	93.388	1089	69	3	213	1301	29171000	29169915	0.000000e+00	1609
4	TraesCS3A01G243400	chr6A	95.814	215	9	0	1	215	29180105	29179891	4.650000e-92	348
5	TraesCS3A01G243400	chr4A	95.925	1276	41	8	33	1299	632313208	632314481	0.000000e+00	2058
6	TraesCS3A01G243400	chr4A	90.732	1025	92	3	278	1301	552270593	552271615	0.000000e+00	1363
7	TraesCS3A01G243400	chr4A	96.377	138	4	1	2137	2273	427882761	427882624	2.270000e-55	226
8	TraesCS3A01G243400	chr4A	95.652	138	5	1	2137	2273	615083241	615083378	1.060000e-53	220
9	TraesCS3A01G243400	chr4A	94.406	143	6	1	2133	2273	615045121	615045263	3.800000e-53	219
10	TraesCS3A01G243400	chr4A	93.662	142	8	1	2133	2273	615060441	615060582	6.360000e-51	211
11	TraesCS3A01G243400	chr7B	94.240	1302	73	2	1	1301	493222269	493223569	0.000000e+00	1988
12	TraesCS3A01G243400	chr1B	94.345	1291	71	2	1	1290	477489551	477490840	0.000000e+00	1978
13	TraesCS3A01G243400	chr5B	93.865	1304	78	2	1	1303	94082420	94083722	0.000000e+00	1964
14	TraesCS3A01G243400	chr5B	96.800	125	4	0	2140	2264	470441007	470441131	2.290000e-50	209
15	TraesCS3A01G243400	chr5D	96.264	1151	40	3	153	1302	440927001	440925853	0.000000e+00	1884
16	TraesCS3A01G243400	chr6B	89.579	1305	132	4	1	1302	133347230	133348533	0.000000e+00	1653
17	TraesCS3A01G243400	chr6B	99.275	138	0	1	2137	2273	654186773	654186636	4.850000e-62	248
18	TraesCS3A01G243400	chr3B	95.996	974	36	3	1	973	683516798	683517769	0.000000e+00	1580
19	TraesCS3A01G243400	chr3B	88.115	244	18	4	1349	1589	436821491	436821726	1.720000e-71	279
20	TraesCS3A01G243400	chr3B	92.228	193	15	0	1891	2083	436837475	436837667	8.000000e-70	274
21	TraesCS3A01G243400	chr3B	84.354	294	20	7	1630	1899	436791028	436791319	4.810000e-67	265
22	TraesCS3A01G243400	chr3B	84.354	294	20	7	1630	1899	436821723	436822014	4.810000e-67	265
23	TraesCS3A01G243400	chr3D	90.537	856	22	16	1303	2137	338580788	338581605	0.000000e+00	1077
24	TraesCS3A01G243400	chrUn	84.354	294	20	7	1630	1899	461319947	461319656	4.810000e-67	265
25	TraesCS3A01G243400	chrUn	92.754	138	9	1	2137	2273	39089470	39089607	4.950000e-47	198
26	TraesCS3A01G243400	chr7D	93.333	135	7	2	2140	2273	92281421	92281288	4.950000e-47	198

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G243400	chr3A	456805015	456807287	2272	False	4198	4198	100.0000	1	2273	1	chr3A.!!$F1	2272
1	TraesCS3A01G243400	chr6A	486382698	486383996	1298	False	2237	2237	97.6980	1	1303	1	chr6A.!!$F1	1302
2	TraesCS3A01G243400	chr6A	29169915	29171000	1085	True	1609	1609	93.3880	213	1301	1	chr6A.!!$R1	1088
3	TraesCS3A01G243400	chr4A	632313208	632314481	1273	False	2058	2058	95.9250	33	1299	1	chr4A.!!$F5	1266
4	TraesCS3A01G243400	chr4A	552270593	552271615	1022	False	1363	1363	90.7320	278	1301	1	chr4A.!!$F1	1023
5	TraesCS3A01G243400	chr7B	493222269	493223569	1300	False	1988	1988	94.2400	1	1301	1	chr7B.!!$F1	1300
6	TraesCS3A01G243400	chr1B	477489551	477490840	1289	False	1978	1978	94.3450	1	1290	1	chr1B.!!$F1	1289
7	TraesCS3A01G243400	chr5B	94082420	94083722	1302	False	1964	1964	93.8650	1	1303	1	chr5B.!!$F1	1302
8	TraesCS3A01G243400	chr5D	440925853	440927001	1148	True	1884	1884	96.2640	153	1302	1	chr5D.!!$R1	1149
9	TraesCS3A01G243400	chr6B	133347230	133348533	1303	False	1653	1653	89.5790	1	1302	1	chr6B.!!$F1	1301
10	TraesCS3A01G243400	chr3B	683516798	683517769	971	False	1580	1580	95.9960	1	973	1	chr3B.!!$F3	972
11	TraesCS3A01G243400	chr3B	436821491	436822014	523	False	272	279	86.2345	1349	1899	2	chr3B.!!$F4	550
12	TraesCS3A01G243400	chr3D	338580788	338581605	817	False	1077	1077	90.5370	1303	2137	1	chr3D.!!$F1	834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
891	900	1.202639	TCTTCGACTGCCTTTCTTGCA	60.203	47.619	0.0	0.0	37.17	4.08	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2156	2200	0.0421	GCTCGGGATCGCGAAATTTC	60.042	55.0	30.96	16.06	36.13	2.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
114	115	3.711704	GGAAGGTGGATATTGTCAGGAGA	59.288	47.826	0.00	0.00	0.00	3.71
366	367	2.870411	ACCTAAAGTTCGTGTGTTCTGC	59.130	45.455	0.00	0.00	0.00	4.26
433	434	3.872696	CACAGACATATAGCCACCACAA	58.127	45.455	0.00	0.00	0.00	3.33
698	699	3.828921	AGGAAAGTTCAAACCCAGTACC	58.171	45.455	0.00	0.00	0.00	3.34
699	700	3.203487	AGGAAAGTTCAAACCCAGTACCA	59.797	43.478	0.00	0.00	0.00	3.25
717	718	9.293404	CCAGTACCATTTATGAGAATGATCAAT	57.707	33.333	0.00	0.00	38.93	2.57
891	900	1.202639	TCTTCGACTGCCTTTCTTGCA	60.203	47.619	0.00	0.00	37.17	4.08
1013	1023	3.446161	CGAGTGGTTATGGAGGTTGACTA	59.554	47.826	0.00	0.00	0.00	2.59
1081	1091	1.202371	CGGTAGCGCCAGTTCTATTGA	60.202	52.381	2.29	0.00	36.97	2.57
1220	1231	1.023719	TGGATGGACTCCCCTCCTAA	58.976	55.000	12.76	0.00	44.72	2.69
1408	1419	1.651138	CTCAGATCGAAACACACTCGC	59.349	52.381	0.00	0.00	36.25	5.03
1493	1504	3.972950	CAGCTACGTATAGTCTGCTGT	57.027	47.619	18.87	0.00	46.17	4.40
1494	1505	3.622828	CAGCTACGTATAGTCTGCTGTG	58.377	50.000	18.87	1.94	46.17	3.66
1495	1506	2.033550	AGCTACGTATAGTCTGCTGTGC	59.966	50.000	4.17	0.00	39.89	4.57
1496	1507	2.033550	GCTACGTATAGTCTGCTGTGCT	59.966	50.000	0.00	0.00	32.28	4.40
1497	1508	2.568696	ACGTATAGTCTGCTGTGCTG	57.431	50.000	0.00	0.00	0.00	4.41
1523	1534	3.181487	GCCGTAAAGTAGTCAACCGGATA	60.181	47.826	9.46	0.00	36.12	2.59
1573	1593	4.988598	AGTTGACACCTGCGCCGG	62.989	66.667	17.13	17.13	0.00	6.13
1590	1610	2.483876	CCGGCATCGATCATTGTACTT	58.516	47.619	0.00	0.00	39.00	2.24
1591	1611	2.221749	CCGGCATCGATCATTGTACTTG	59.778	50.000	0.00	0.00	39.00	3.16
1592	1612	2.866156	CGGCATCGATCATTGTACTTGT	59.134	45.455	0.00	0.00	39.00	3.16
1608	1628	0.651551	TTGTACGTGCGTGTTGTTCC	59.348	50.000	7.55	0.00	0.00	3.62
1609	1629	1.152989	TGTACGTGCGTGTTGTTCCC	61.153	55.000	7.55	0.00	0.00	3.97
1619	1639	0.881159	TGTTGTTCCCAAGGCGTACG	60.881	55.000	11.84	11.84	0.00	3.67
1620	1640	0.881600	GTTGTTCCCAAGGCGTACGT	60.882	55.000	17.90	0.00	0.00	3.57
1621	1641	0.678395	TTGTTCCCAAGGCGTACGTA	59.322	50.000	17.90	0.00	0.00	3.57
1622	1642	0.038343	TGTTCCCAAGGCGTACGTAC	60.038	55.000	17.90	15.90	0.00	3.67
1717	1746	1.516603	GCCAACGCGTCTACTCTCC	60.517	63.158	14.44	0.00	0.00	3.71
1749	1778	1.139734	CACCCACATCCTCTCGACG	59.860	63.158	0.00	0.00	0.00	5.12
1858	1902	3.157217	GATCAGCGCCCTCCACGAT	62.157	63.158	2.29	0.00	0.00	3.73
1987	2031	1.065928	GAGGGTCGGCGACATACTG	59.934	63.158	37.13	0.00	33.68	2.74
2024	2068	3.403558	GGGTCCTCCTCCACAGCC	61.404	72.222	0.00	0.00	0.00	4.85
2137	2181	2.125552	CGCGCCTTGTCCAGATCA	60.126	61.111	0.00	0.00	0.00	2.92
2138	2182	1.522355	CGCGCCTTGTCCAGATCAT	60.522	57.895	0.00	0.00	0.00	2.45
2139	2183	1.091771	CGCGCCTTGTCCAGATCATT	61.092	55.000	0.00	0.00	0.00	2.57
2140	2184	0.379669	GCGCCTTGTCCAGATCATTG	59.620	55.000	0.00	0.00	0.00	2.82
2141	2185	1.742761	CGCCTTGTCCAGATCATTGT	58.257	50.000	0.00	0.00	0.00	2.71
2142	2186	2.086869	CGCCTTGTCCAGATCATTGTT	58.913	47.619	0.00	0.00	0.00	2.83
2143	2187	2.489329	CGCCTTGTCCAGATCATTGTTT	59.511	45.455	0.00	0.00	0.00	2.83
2144	2188	3.057315	CGCCTTGTCCAGATCATTGTTTT	60.057	43.478	0.00	0.00	0.00	2.43
2145	2189	4.240096	GCCTTGTCCAGATCATTGTTTTG	58.760	43.478	0.00	0.00	0.00	2.44
2146	2190	4.813027	CCTTGTCCAGATCATTGTTTTGG	58.187	43.478	0.00	0.00	0.00	3.28
2147	2191	4.322198	CCTTGTCCAGATCATTGTTTTGGG	60.322	45.833	0.00	0.00	0.00	4.12
2148	2192	3.843422	TGTCCAGATCATTGTTTTGGGT	58.157	40.909	0.00	0.00	0.00	4.51
2149	2193	4.991776	TGTCCAGATCATTGTTTTGGGTA	58.008	39.130	0.00	0.00	0.00	3.69
2150	2194	4.764823	TGTCCAGATCATTGTTTTGGGTAC	59.235	41.667	0.00	0.00	0.00	3.34
2164	2208	0.648958	GGGTACCGCTCGAAATTTCG	59.351	55.000	30.11	30.11	46.49	3.46
2165	2209	3.235759	GGGTACCGCTCGAAATTTCGC	62.236	57.143	30.89	19.08	45.31	4.70
2172	2216	4.872476	CGAAATTTCGCGATCCCG	57.128	55.556	26.01	6.07	44.26	5.14
2173	2217	2.293765	CGAAATTTCGCGATCCCGA	58.706	52.632	26.01	0.00	44.26	5.14
2174	2218	0.229753	CGAAATTTCGCGATCCCGAG	59.770	55.000	26.01	0.00	44.26	4.63
2175	2219	0.042100	GAAATTTCGCGATCCCGAGC	60.042	55.000	10.88	0.00	38.60	5.03
2181	2225	2.657620	GCGATCCCGAGCGGTTAC	60.658	66.667	8.25	0.00	41.01	2.50
2182	2226	2.027169	CGATCCCGAGCGGTTACC	59.973	66.667	8.25	0.00	36.46	2.85
2183	2227	3.818982	CGATCCCGAGCGGTTACCG	62.819	68.421	20.58	20.58	43.95	4.02
2192	2236	3.071751	CGGTTACCGCGTTTACCG	58.928	61.111	19.26	19.26	46.22	4.02
2201	2245	4.190350	CGTTTACCGCTACCCCAC	57.810	61.111	0.00	0.00	0.00	4.61
2202	2246	1.806758	CGTTTACCGCTACCCCACG	60.807	63.158	0.00	0.00	0.00	4.94
2208	2252	3.569902	CGCTACCCCACGGAAAAC	58.430	61.111	0.00	0.00	0.00	2.43
2209	2253	1.301874	CGCTACCCCACGGAAAACA	60.302	57.895	0.00	0.00	0.00	2.83
2210	2254	1.571215	CGCTACCCCACGGAAAACAC	61.571	60.000	0.00	0.00	0.00	3.32
2211	2255	0.250597	GCTACCCCACGGAAAACACT	60.251	55.000	0.00	0.00	0.00	3.55
2212	2256	1.804601	CTACCCCACGGAAAACACTC	58.195	55.000	0.00	0.00	0.00	3.51
2213	2257	1.071071	CTACCCCACGGAAAACACTCA	59.929	52.381	0.00	0.00	0.00	3.41
2214	2258	0.476771	ACCCCACGGAAAACACTCAT	59.523	50.000	0.00	0.00	0.00	2.90
2215	2259	1.700739	ACCCCACGGAAAACACTCATA	59.299	47.619	0.00	0.00	0.00	2.15
2216	2260	2.081462	CCCCACGGAAAACACTCATAC	58.919	52.381	0.00	0.00	0.00	2.39
2217	2261	2.081462	CCCACGGAAAACACTCATACC	58.919	52.381	0.00	0.00	0.00	2.73
2218	2262	2.551287	CCCACGGAAAACACTCATACCA	60.551	50.000	0.00	0.00	0.00	3.25
2219	2263	3.142951	CCACGGAAAACACTCATACCAA	58.857	45.455	0.00	0.00	0.00	3.67
2220	2264	3.188460	CCACGGAAAACACTCATACCAAG	59.812	47.826	0.00	0.00	0.00	3.61
2221	2265	2.812011	ACGGAAAACACTCATACCAAGC	59.188	45.455	0.00	0.00	0.00	4.01
2222	2266	2.811431	CGGAAAACACTCATACCAAGCA	59.189	45.455	0.00	0.00	0.00	3.91
2223	2267	3.252215	CGGAAAACACTCATACCAAGCAA	59.748	43.478	0.00	0.00	0.00	3.91
2224	2268	4.261405	CGGAAAACACTCATACCAAGCAAA	60.261	41.667	0.00	0.00	0.00	3.68
2225	2269	5.596845	GGAAAACACTCATACCAAGCAAAA	58.403	37.500	0.00	0.00	0.00	2.44
2226	2270	6.045955	GGAAAACACTCATACCAAGCAAAAA	58.954	36.000	0.00	0.00	0.00	1.94
2264	2308	9.311916	TTTGAAATTTGAATTCAAACGATCACT	57.688	25.926	30.64	14.02	46.34	3.41
2268	2312	4.668576	TGAATTCAAACGATCACTCTGC	57.331	40.909	5.45	0.00	0.00	4.26
2269	2313	4.318332	TGAATTCAAACGATCACTCTGCT	58.682	39.130	5.45	0.00	0.00	4.24
2270	2314	4.152938	TGAATTCAAACGATCACTCTGCTG	59.847	41.667	5.45	0.00	0.00	4.41
2271	2315	2.820059	TCAAACGATCACTCTGCTGT	57.180	45.000	0.00	0.00	0.00	4.40
2272	2316	3.111853	TCAAACGATCACTCTGCTGTT	57.888	42.857	0.00	0.00	0.00	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
114	115	2.293399	GGCATCGGGAGCGATAAAATTT	59.707	45.455	0.00	0.00	0.00	1.82
366	367	1.601419	TTCCCCGTAGAACTCGCCAG	61.601	60.000	0.00	0.00	0.00	4.85
433	434	5.068460	CAGCTAGGCAGACTTTACATCTAGT	59.932	44.000	0.00	0.00	0.00	2.57
698	699	9.914131	AAGCATCATTGATCATTCTCATAAATG	57.086	29.630	0.00	0.00	37.87	2.32
717	718	1.002746	TAGCACCGCCAAAGCATCA	60.003	52.632	0.00	0.00	39.83	3.07
1013	1023	3.261897	CCACAGATCAACTACCTCCTTGT	59.738	47.826	0.00	0.00	0.00	3.16
1141	1152	2.036256	GTGGGCTGGAGCATTGGT	59.964	61.111	0.20	0.00	44.36	3.67
1220	1231	5.237344	GCCATAACGCTAGTCATGAGAAAAT	59.763	40.000	0.00	0.00	0.00	1.82
1330	1341	3.069443	CCTATTCTGCCTGGTTCTCTCTC	59.931	52.174	0.00	0.00	0.00	3.20
1331	1342	3.037549	CCTATTCTGCCTGGTTCTCTCT	58.962	50.000	0.00	0.00	0.00	3.10
1332	1343	2.769095	ACCTATTCTGCCTGGTTCTCTC	59.231	50.000	0.00	0.00	0.00	3.20
1366	1377	1.120530	ATTACAGGGGAGCCACGTAG	58.879	55.000	0.00	0.00	0.00	3.51
1367	1378	2.431782	GTTATTACAGGGGAGCCACGTA	59.568	50.000	0.00	0.00	0.00	3.57
1408	1419	0.718220	GCAACGAAAACTCTCGCACG	60.718	55.000	0.00	0.00	42.69	5.34
1493	1504	0.108992	CTACTTTACGGCCGTCAGCA	60.109	55.000	38.01	21.14	46.50	4.41
1494	1505	0.108945	ACTACTTTACGGCCGTCAGC	60.109	55.000	38.01	0.00	42.60	4.26
1495	1506	1.200716	TGACTACTTTACGGCCGTCAG	59.799	52.381	38.01	31.73	0.00	3.51
1496	1507	1.246649	TGACTACTTTACGGCCGTCA	58.753	50.000	38.01	23.63	0.00	4.35
1497	1508	1.988467	GTTGACTACTTTACGGCCGTC	59.012	52.381	38.01	18.63	0.00	4.79
1523	1534	1.138459	CGATGAGACGCAGCTCACT	59.862	57.895	7.58	0.00	46.72	3.41
1573	1593	4.503007	ACGTACAAGTACAATGATCGATGC	59.497	41.667	0.54	0.00	35.87	3.91
1590	1610	1.152989	GGGAACAACACGCACGTACA	61.153	55.000	0.00	0.00	0.00	2.90
1591	1611	1.152989	TGGGAACAACACGCACGTAC	61.153	55.000	0.00	0.00	37.44	3.67
1592	1612	1.143401	TGGGAACAACACGCACGTA	59.857	52.632	0.00	0.00	37.44	3.57
1619	1639	2.751806	ACTGGCTTGTACTCCTACGTAC	59.248	50.000	0.00	0.00	40.06	3.67
1620	1640	3.077484	ACTGGCTTGTACTCCTACGTA	57.923	47.619	0.00	0.00	0.00	3.57
1621	1641	1.920610	ACTGGCTTGTACTCCTACGT	58.079	50.000	0.00	0.00	0.00	3.57
1622	1642	2.607187	CAACTGGCTTGTACTCCTACG	58.393	52.381	0.00	0.00	0.00	3.51
1623	1643	2.347731	GCAACTGGCTTGTACTCCTAC	58.652	52.381	0.00	0.00	40.25	3.18
1624	1644	2.762535	GCAACTGGCTTGTACTCCTA	57.237	50.000	0.00	0.00	40.25	2.94
1625	1645	3.633361	GCAACTGGCTTGTACTCCT	57.367	52.632	0.00	0.00	40.25	3.69
1717	1746	1.898574	GGGTGCTGTTGGTCCTGTG	60.899	63.158	0.00	0.00	0.00	3.66
1854	1898	1.327303	GAGGAGGAGCAGATCATCGT	58.673	55.000	0.00	0.00	39.69	3.73
1858	1902	0.753479	GGACGAGGAGGAGCAGATCA	60.753	60.000	0.00	0.00	0.00	2.92
2052	2096	0.654160	TATGCCGTCGAGTCTGTACG	59.346	55.000	0.00	3.39	36.42	3.67
2137	2181	1.161843	CGAGCGGTACCCAAAACAAT	58.838	50.000	6.25	0.00	0.00	2.71
2138	2182	0.106335	TCGAGCGGTACCCAAAACAA	59.894	50.000	6.25	0.00	0.00	2.83
2139	2183	0.106335	TTCGAGCGGTACCCAAAACA	59.894	50.000	6.25	0.00	0.00	2.83
2140	2184	1.228533	TTTCGAGCGGTACCCAAAAC	58.771	50.000	6.25	0.00	0.00	2.43
2141	2185	2.188062	ATTTCGAGCGGTACCCAAAA	57.812	45.000	6.25	0.59	0.00	2.44
2142	2186	2.188062	AATTTCGAGCGGTACCCAAA	57.812	45.000	6.25	0.00	0.00	3.28
2143	2187	2.078392	GAAATTTCGAGCGGTACCCAA	58.922	47.619	6.25	0.00	0.00	4.12
2144	2188	1.729284	GAAATTTCGAGCGGTACCCA	58.271	50.000	6.25	0.00	0.00	4.51
2156	2200	0.042100	GCTCGGGATCGCGAAATTTC	60.042	55.000	30.96	16.06	36.13	2.17
2157	2201	2.014594	GCTCGGGATCGCGAAATTT	58.985	52.632	30.96	0.00	36.13	1.82
2158	2202	3.719214	GCTCGGGATCGCGAAATT	58.281	55.556	30.96	0.00	36.13	1.82
2164	2208	2.657620	GTAACCGCTCGGGATCGC	60.658	66.667	13.31	0.00	39.97	4.58
2165	2209	2.027169	GGTAACCGCTCGGGATCG	59.973	66.667	13.31	0.00	39.97	3.69
2166	2210	2.027169	CGGTAACCGCTCGGGATC	59.973	66.667	13.31	0.00	41.17	3.36
2185	2229	1.448365	CCGTGGGGTAGCGGTAAAC	60.448	63.158	0.00	0.00	42.73	2.01
2186	2230	2.980475	CCGTGGGGTAGCGGTAAA	59.020	61.111	0.00	0.00	42.73	2.01
2191	2235	1.301874	TGTTTTCCGTGGGGTAGCG	60.302	57.895	0.00	0.00	33.83	4.26
2192	2236	0.250597	AGTGTTTTCCGTGGGGTAGC	60.251	55.000	0.00	0.00	33.83	3.58
2193	2237	1.071071	TGAGTGTTTTCCGTGGGGTAG	59.929	52.381	0.00	0.00	33.83	3.18
2194	2238	1.129917	TGAGTGTTTTCCGTGGGGTA	58.870	50.000	0.00	0.00	33.83	3.69
2195	2239	0.476771	ATGAGTGTTTTCCGTGGGGT	59.523	50.000	0.00	0.00	33.83	4.95
2196	2240	2.081462	GTATGAGTGTTTTCCGTGGGG	58.919	52.381	0.00	0.00	0.00	4.96
2197	2241	2.081462	GGTATGAGTGTTTTCCGTGGG	58.919	52.381	0.00	0.00	0.00	4.61
2198	2242	2.773487	TGGTATGAGTGTTTTCCGTGG	58.227	47.619	0.00	0.00	0.00	4.94
2199	2243	3.364964	GCTTGGTATGAGTGTTTTCCGTG	60.365	47.826	0.00	0.00	0.00	4.94
2200	2244	2.812011	GCTTGGTATGAGTGTTTTCCGT	59.188	45.455	0.00	0.00	0.00	4.69
2201	2245	2.811431	TGCTTGGTATGAGTGTTTTCCG	59.189	45.455	0.00	0.00	0.00	4.30
2202	2246	4.846779	TTGCTTGGTATGAGTGTTTTCC	57.153	40.909	0.00	0.00	0.00	3.13
2237	2281	9.913451	GTGATCGTTTGAATTCAAATTTCAAAA	57.087	25.926	30.63	14.38	46.12	2.44
2238	2282	9.311916	AGTGATCGTTTGAATTCAAATTTCAAA	57.688	25.926	30.63	15.70	46.12	2.69
2239	2283	8.870160	AGTGATCGTTTGAATTCAAATTTCAA	57.130	26.923	30.63	17.00	46.12	2.69
2240	2284	8.352201	AGAGTGATCGTTTGAATTCAAATTTCA	58.648	29.630	30.63	26.98	46.12	2.69
2241	2285	8.633408	CAGAGTGATCGTTTGAATTCAAATTTC	58.367	33.333	30.63	25.33	46.12	2.17
2242	2286	7.115378	GCAGAGTGATCGTTTGAATTCAAATTT	59.885	33.333	30.63	20.10	46.12	1.82
2243	2287	6.583806	GCAGAGTGATCGTTTGAATTCAAATT	59.416	34.615	30.63	20.39	46.12	1.82
2244	2288	6.072286	AGCAGAGTGATCGTTTGAATTCAAAT	60.072	34.615	30.63	18.50	46.12	2.32
2245	2289	5.239306	AGCAGAGTGATCGTTTGAATTCAAA	59.761	36.000	26.01	26.01	42.90	2.69
2246	2290	4.756642	AGCAGAGTGATCGTTTGAATTCAA	59.243	37.500	16.91	16.91	0.00	2.69
2247	2291	4.152938	CAGCAGAGTGATCGTTTGAATTCA	59.847	41.667	3.38	3.38	0.00	2.57
2248	2292	4.153117	ACAGCAGAGTGATCGTTTGAATTC	59.847	41.667	0.00	0.00	0.00	2.17
2249	2293	4.067896	ACAGCAGAGTGATCGTTTGAATT	58.932	39.130	0.00	0.00	0.00	2.17
2250	2294	3.668447	ACAGCAGAGTGATCGTTTGAAT	58.332	40.909	0.00	0.00	0.00	2.57
2251	2295	3.111853	ACAGCAGAGTGATCGTTTGAA	57.888	42.857	0.00	0.00	0.00	2.69
2252	2296	2.820059	ACAGCAGAGTGATCGTTTGA	57.180	45.000	0.00	0.00	0.00	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.