Multiple sequence alignment - TraesCS3A01G242300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G242300 chr3A 100.000 6333 0 0 1 6333 455616769 455623101 0.000000e+00 11695.0
1 TraesCS3A01G242300 chr3A 73.348 2754 663 48 1247 3971 306880455 306877744 0.000000e+00 953.0
2 TraesCS3A01G242300 chr3D 87.986 4961 547 26 242 5177 431230875 431225939 0.000000e+00 5814.0
3 TraesCS3A01G242300 chr3D 84.169 1895 287 13 3493 5382 302254119 302256005 0.000000e+00 1825.0
4 TraesCS3A01G242300 chr3D 73.820 2754 648 50 1247 3971 230782337 230779628 0.000000e+00 1024.0
5 TraesCS3A01G242300 chr3D 97.992 249 5 0 1 249 542244001 542244249 3.510000e-117 433.0
6 TraesCS3A01G242300 chr3D 79.006 362 71 4 242 600 3832747 3833106 6.340000e-60 243.0
7 TraesCS3A01G242300 chr3D 78.177 362 74 4 242 600 30313522 30313881 6.390000e-55 226.0
8 TraesCS3A01G242300 chr5D 75.980 4413 992 52 1068 5441 99357944 99353561 0.000000e+00 2215.0
9 TraesCS3A01G242300 chr5D 74.035 5180 1239 89 245 5369 483134462 483129334 0.000000e+00 2017.0
10 TraesCS3A01G242300 chr5D 77.647 2635 531 44 2992 5605 249008354 249005757 0.000000e+00 1550.0
11 TraesCS3A01G242300 chr5D 75.537 1210 268 18 1771 2957 249041916 249040712 2.560000e-158 569.0
12 TraesCS3A01G242300 chr5D 98.765 243 3 0 1 243 211408288 211408530 3.510000e-117 433.0
13 TraesCS3A01G242300 chr6B 74.480 5431 1227 126 245 5604 153390901 153385559 0.000000e+00 2204.0
14 TraesCS3A01G242300 chr6B 92.216 501 26 2 5833 6333 474646082 474645595 0.000000e+00 697.0
15 TraesCS3A01G242300 chr6B 90.763 498 34 1 5836 6333 252385956 252386441 0.000000e+00 654.0
16 TraesCS3A01G242300 chr6B 91.146 384 30 3 5836 6218 173829669 173830049 9.410000e-143 518.0
17 TraesCS3A01G242300 chr6B 88.285 239 21 5 5604 5838 173818600 173818835 4.830000e-71 279.0
18 TraesCS3A01G242300 chr6B 80.912 351 63 2 2043 2393 17090360 17090706 2.250000e-69 274.0
19 TraesCS3A01G242300 chr6B 90.608 181 15 2 5604 5782 474646261 474646081 8.210000e-59 239.0
20 TraesCS3A01G242300 chr6B 78.966 290 33 12 5604 5866 288801736 288802024 8.440000e-39 172.0
21 TraesCS3A01G242300 chr2D 77.348 3439 708 51 2196 5604 346053508 346056905 0.000000e+00 1969.0
22 TraesCS3A01G242300 chr2D 77.956 1937 378 37 242 2156 346051586 346053495 0.000000e+00 1166.0
23 TraesCS3A01G242300 chr2D 96.512 258 7 1 1 256 460214254 460213997 5.870000e-115 425.0
24 TraesCS3A01G242300 chr2D 78.453 362 73 4 242 600 64965537 64965896 1.370000e-56 231.0
25 TraesCS3A01G242300 chr2D 78.453 362 73 4 242 600 642345244 642344885 1.370000e-56 231.0
26 TraesCS3A01G242300 chr6D 73.644 5217 1270 86 242 5404 297447507 297452672 0.000000e+00 1919.0
27 TraesCS3A01G242300 chr6D 72.631 2554 611 53 1714 4231 448583654 448586155 0.000000e+00 763.0
28 TraesCS3A01G242300 chr6D 74.164 1436 323 32 242 1665 448582245 448583644 2.580000e-153 553.0
29 TraesCS3A01G242300 chr6D 96.139 259 10 0 1 259 186912894 186913152 2.110000e-114 424.0
30 TraesCS3A01G242300 chr6D 78.571 350 70 4 242 588 436338505 436338852 6.390000e-55 226.0
31 TraesCS3A01G242300 chr6D 78.276 290 35 12 5604 5866 226909650 226909938 1.830000e-35 161.0
32 TraesCS3A01G242300 chr1A 80.541 2071 378 18 2350 4399 358910277 358912343 0.000000e+00 1568.0
33 TraesCS3A01G242300 chr1A 81.157 1141 189 22 4474 5603 358928491 358929616 0.000000e+00 893.0
34 TraesCS3A01G242300 chr5B 86.074 1429 175 10 3844 5259 671510549 671511966 0.000000e+00 1515.0
35 TraesCS3A01G242300 chr5B 89.859 355 36 0 5253 5607 671579666 671580020 2.080000e-124 457.0
36 TraesCS3A01G242300 chr5B 82.500 200 23 8 5670 5866 477976626 477976436 1.410000e-36 165.0
37 TraesCS3A01G242300 chr7D 76.123 2894 638 48 2728 5594 234182845 234185712 0.000000e+00 1467.0
38 TraesCS3A01G242300 chr7D 88.473 1015 106 10 4561 5573 107301998 107303003 0.000000e+00 1216.0
39 TraesCS3A01G242300 chr7D 98.770 244 3 0 1 244 360261986 360261743 9.750000e-118 435.0
40 TraesCS3A01G242300 chr7D 97.984 248 4 1 1 248 252107477 252107723 4.540000e-116 429.0
41 TraesCS3A01G242300 chr7D 82.609 230 27 11 5384 5606 156828478 156828701 2.330000e-44 191.0
42 TraesCS3A01G242300 chr2B 75.990 2803 610 55 2836 5606 772645613 772648384 0.000000e+00 1389.0
43 TraesCS3A01G242300 chr2B 89.481 732 62 4 5604 6333 296478458 296477740 0.000000e+00 911.0
44 TraesCS3A01G242300 chr2B 91.018 501 35 3 5834 6333 459421856 459422347 0.000000e+00 667.0
45 TraesCS3A01G242300 chr2B 90.763 498 34 1 5836 6333 371933385 371932900 0.000000e+00 654.0
46 TraesCS3A01G242300 chr2B 91.620 179 13 2 5604 5780 459421676 459421854 4.900000e-61 246.0
47 TraesCS3A01G242300 chr2B 100.000 30 0 0 3504 3533 546210461 546210490 8.870000e-04 56.5
48 TraesCS3A01G242300 chr1D 81.638 1062 190 5 3542 4601 473414563 473415621 0.000000e+00 876.0
49 TraesCS3A01G242300 chr1D 97.992 249 5 0 1 249 400426779 400427027 3.510000e-117 433.0
50 TraesCS3A01G242300 chr1D 96.875 256 7 1 1 256 351684414 351684668 1.630000e-115 427.0
51 TraesCS3A01G242300 chr1D 94.161 274 14 2 1 274 150202096 150202367 3.530000e-112 416.0
52 TraesCS3A01G242300 chr1D 72.165 485 121 11 1982 2459 364690911 364691388 1.110000e-27 135.0
53 TraesCS3A01G242300 chr7B 91.165 498 32 1 5836 6333 353967652 353967167 0.000000e+00 665.0
54 TraesCS3A01G242300 chr7B 92.143 140 10 1 5605 5743 386252564 386252425 5.010000e-46 196.0
55 TraesCS3A01G242300 chr1B 90.927 496 31 1 5838 6333 359602108 359601627 0.000000e+00 654.0
56 TraesCS3A01G242300 chr1B 78.397 287 35 11 5604 5864 116766313 116766598 1.830000e-35 161.0
57 TraesCS3A01G242300 chr1B 78.339 277 33 11 5616 5866 151740324 151740049 3.060000e-33 154.0
58 TraesCS3A01G242300 chr1B 77.586 290 36 15 5604 5866 429716168 429715881 1.420000e-31 148.0
59 TraesCS3A01G242300 chr3B 73.537 1504 338 45 1247 2712 316613409 316614890 9.410000e-143 518.0
60 TraesCS3A01G242300 chr3B 93.478 138 8 1 5604 5740 715234964 715235101 2.990000e-48 204.0
61 TraesCS3A01G242300 chr3B 92.143 140 10 1 5605 5743 608371621 608371482 5.010000e-46 196.0
62 TraesCS3A01G242300 chr3B 85.882 85 11 1 5948 6031 441252632 441252548 8.740000e-14 89.8
63 TraesCS3A01G242300 chr7A 80.968 620 106 10 789 1406 680677659 680678268 1.230000e-131 481.0
64 TraesCS3A01G242300 chr7A 70.841 1046 270 32 2169 3193 641147155 641146124 6.430000e-50 209.0
65 TraesCS3A01G242300 chr4D 92.086 139 9 2 5603 5740 264316103 264316240 1.800000e-45 195.0
66 TraesCS3A01G242300 chr4B 92.029 138 10 1 5604 5740 305324335 305324472 6.480000e-45 193.0
67 TraesCS3A01G242300 chr5A 78.621 290 34 12 5604 5866 312583892 312583604 3.930000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G242300 chr3A 455616769 455623101 6332 False 11695.0 11695 100.0000 1 6333 1 chr3A.!!$F1 6332
1 TraesCS3A01G242300 chr3A 306877744 306880455 2711 True 953.0 953 73.3480 1247 3971 1 chr3A.!!$R1 2724
2 TraesCS3A01G242300 chr3D 431225939 431230875 4936 True 5814.0 5814 87.9860 242 5177 1 chr3D.!!$R2 4935
3 TraesCS3A01G242300 chr3D 302254119 302256005 1886 False 1825.0 1825 84.1690 3493 5382 1 chr3D.!!$F3 1889
4 TraesCS3A01G242300 chr3D 230779628 230782337 2709 True 1024.0 1024 73.8200 1247 3971 1 chr3D.!!$R1 2724
5 TraesCS3A01G242300 chr5D 99353561 99357944 4383 True 2215.0 2215 75.9800 1068 5441 1 chr5D.!!$R1 4373
6 TraesCS3A01G242300 chr5D 483129334 483134462 5128 True 2017.0 2017 74.0350 245 5369 1 chr5D.!!$R4 5124
7 TraesCS3A01G242300 chr5D 249005757 249008354 2597 True 1550.0 1550 77.6470 2992 5605 1 chr5D.!!$R2 2613
8 TraesCS3A01G242300 chr5D 249040712 249041916 1204 True 569.0 569 75.5370 1771 2957 1 chr5D.!!$R3 1186
9 TraesCS3A01G242300 chr6B 153385559 153390901 5342 True 2204.0 2204 74.4800 245 5604 1 chr6B.!!$R1 5359
10 TraesCS3A01G242300 chr6B 474645595 474646261 666 True 468.0 697 91.4120 5604 6333 2 chr6B.!!$R2 729
11 TraesCS3A01G242300 chr2D 346051586 346056905 5319 False 1567.5 1969 77.6520 242 5604 2 chr2D.!!$F2 5362
12 TraesCS3A01G242300 chr6D 297447507 297452672 5165 False 1919.0 1919 73.6440 242 5404 1 chr6D.!!$F3 5162
13 TraesCS3A01G242300 chr6D 448582245 448586155 3910 False 658.0 763 73.3975 242 4231 2 chr6D.!!$F5 3989
14 TraesCS3A01G242300 chr1A 358910277 358912343 2066 False 1568.0 1568 80.5410 2350 4399 1 chr1A.!!$F1 2049
15 TraesCS3A01G242300 chr1A 358928491 358929616 1125 False 893.0 893 81.1570 4474 5603 1 chr1A.!!$F2 1129
16 TraesCS3A01G242300 chr5B 671510549 671511966 1417 False 1515.0 1515 86.0740 3844 5259 1 chr5B.!!$F1 1415
17 TraesCS3A01G242300 chr7D 234182845 234185712 2867 False 1467.0 1467 76.1230 2728 5594 1 chr7D.!!$F3 2866
18 TraesCS3A01G242300 chr7D 107301998 107303003 1005 False 1216.0 1216 88.4730 4561 5573 1 chr7D.!!$F1 1012
19 TraesCS3A01G242300 chr2B 772645613 772648384 2771 False 1389.0 1389 75.9900 2836 5606 1 chr2B.!!$F2 2770
20 TraesCS3A01G242300 chr2B 296477740 296478458 718 True 911.0 911 89.4810 5604 6333 1 chr2B.!!$R1 729
21 TraesCS3A01G242300 chr2B 459421676 459422347 671 False 456.5 667 91.3190 5604 6333 2 chr2B.!!$F3 729
22 TraesCS3A01G242300 chr1D 473414563 473415621 1058 False 876.0 876 81.6380 3542 4601 1 chr1D.!!$F5 1059
23 TraesCS3A01G242300 chr3B 316613409 316614890 1481 False 518.0 518 73.5370 1247 2712 1 chr3B.!!$F1 1465
24 TraesCS3A01G242300 chr7A 680677659 680678268 609 False 481.0 481 80.9680 789 1406 1 chr7A.!!$F1 617
25 TraesCS3A01G242300 chr7A 641146124 641147155 1031 True 209.0 209 70.8410 2169 3193 1 chr7A.!!$R1 1024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 755 0.188342 AAGCTGTGGTTGGTGGGAAT 59.812 50.0 0.00 0.00 0.00 3.01 F
1849 1861 0.097674 AAAGAGCGCATCGATGTTGC 59.902 50.0 26.96 26.96 27.79 4.17 F
3075 3125 0.114954 ACATGATTGGTTGGCCCTGT 59.885 50.0 0.00 0.00 0.00 4.00 F
3990 4056 0.461548 CAAGAGAGTAGGCATGCGGA 59.538 55.0 12.44 0.00 0.00 5.54 F
5188 5278 0.391793 TCGGATTGTATGGCGTTGCA 60.392 50.0 0.00 0.00 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2076 0.471022 AACACCACCACCCAAATCCC 60.471 55.0 0.00 0.0 0.0 3.85 R
3307 3366 0.106015 AATAAGGGTGATGGGCCTGC 60.106 55.0 4.53 0.0 0.0 4.85 R
4423 4494 0.177141 CCCTAAGAATGTCCGCCGAA 59.823 55.0 0.00 0.0 0.0 4.30 R
5247 5338 0.117140 TCAGTGGGGTGAGTGGAGAT 59.883 55.0 0.00 0.0 0.0 2.75 R
6078 6180 1.758440 TTGTCCAAGAGCTCTGCCGT 61.758 55.0 19.06 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.342862 CTCCTAATGATGTGATCCCGTT 57.657 45.455 0.00 0.00 0.00 4.44
22 23 5.468540 CTCCTAATGATGTGATCCCGTTA 57.531 43.478 0.00 0.00 0.00 3.18
23 24 5.853936 CTCCTAATGATGTGATCCCGTTAA 58.146 41.667 0.00 0.00 0.00 2.01
24 25 6.433847 TCCTAATGATGTGATCCCGTTAAT 57.566 37.500 0.00 0.00 0.00 1.40
25 26 6.464222 TCCTAATGATGTGATCCCGTTAATC 58.536 40.000 0.00 0.00 0.00 1.75
26 27 6.042666 TCCTAATGATGTGATCCCGTTAATCA 59.957 38.462 0.00 0.00 0.00 2.57
27 28 6.710295 CCTAATGATGTGATCCCGTTAATCAA 59.290 38.462 0.00 0.00 35.04 2.57
28 29 7.228507 CCTAATGATGTGATCCCGTTAATCAAA 59.771 37.037 0.00 0.00 35.04 2.69
29 30 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32
30 31 6.375945 TGATGTGATCCCGTTAATCAAATG 57.624 37.500 0.00 0.00 32.39 2.32
31 32 6.118852 TGATGTGATCCCGTTAATCAAATGA 58.881 36.000 0.00 0.00 32.39 2.57
32 33 5.811399 TGTGATCCCGTTAATCAAATGAC 57.189 39.130 0.00 0.00 35.04 3.06
33 34 5.249420 TGTGATCCCGTTAATCAAATGACA 58.751 37.500 0.00 0.00 35.04 3.58
34 35 5.707764 TGTGATCCCGTTAATCAAATGACAA 59.292 36.000 0.00 0.00 35.04 3.18
35 36 6.027749 GTGATCCCGTTAATCAAATGACAAC 58.972 40.000 0.00 0.00 35.04 3.32
36 37 5.943416 TGATCCCGTTAATCAAATGACAACT 59.057 36.000 0.00 0.00 30.37 3.16
37 38 5.873179 TCCCGTTAATCAAATGACAACTC 57.127 39.130 7.65 0.00 0.00 3.01
38 39 5.309638 TCCCGTTAATCAAATGACAACTCA 58.690 37.500 7.65 0.00 0.00 3.41
39 40 5.943416 TCCCGTTAATCAAATGACAACTCAT 59.057 36.000 7.65 0.00 38.94 2.90
40 41 6.029607 CCCGTTAATCAAATGACAACTCATG 58.970 40.000 7.65 0.00 37.20 3.07
52 53 4.679373 ACAACTCATGTCTATGGCTAGG 57.321 45.455 0.00 0.00 37.96 3.02
53 54 4.290093 ACAACTCATGTCTATGGCTAGGA 58.710 43.478 0.00 0.00 37.96 2.94
54 55 4.716784 ACAACTCATGTCTATGGCTAGGAA 59.283 41.667 0.00 0.00 37.96 3.36
55 56 5.189736 ACAACTCATGTCTATGGCTAGGAAA 59.810 40.000 0.00 0.00 37.96 3.13
56 57 5.283457 ACTCATGTCTATGGCTAGGAAAC 57.717 43.478 0.00 0.00 34.97 2.78
57 58 4.716784 ACTCATGTCTATGGCTAGGAAACA 59.283 41.667 0.00 0.00 34.97 2.83
58 59 5.367937 ACTCATGTCTATGGCTAGGAAACAT 59.632 40.000 0.00 0.00 34.97 2.71
59 60 6.554982 ACTCATGTCTATGGCTAGGAAACATA 59.445 38.462 0.00 0.00 34.97 2.29
60 61 7.071196 ACTCATGTCTATGGCTAGGAAACATAA 59.929 37.037 0.00 0.00 34.97 1.90
61 62 7.217200 TCATGTCTATGGCTAGGAAACATAAC 58.783 38.462 0.00 0.00 34.97 1.89
62 63 5.925509 TGTCTATGGCTAGGAAACATAACC 58.074 41.667 0.00 0.00 0.00 2.85
63 64 5.427157 TGTCTATGGCTAGGAAACATAACCA 59.573 40.000 0.00 0.00 0.00 3.67
64 65 6.101150 TGTCTATGGCTAGGAAACATAACCAT 59.899 38.462 0.00 0.00 39.62 3.55
65 66 6.651225 GTCTATGGCTAGGAAACATAACCATC 59.349 42.308 0.00 0.00 37.58 3.51
66 67 5.653255 ATGGCTAGGAAACATAACCATCT 57.347 39.130 0.00 0.00 30.76 2.90
67 68 5.450818 TGGCTAGGAAACATAACCATCTT 57.549 39.130 0.00 0.00 0.00 2.40
68 69 5.826643 TGGCTAGGAAACATAACCATCTTT 58.173 37.500 0.00 0.00 0.00 2.52
69 70 5.652014 TGGCTAGGAAACATAACCATCTTTG 59.348 40.000 0.00 0.00 0.00 2.77
70 71 5.885912 GGCTAGGAAACATAACCATCTTTGA 59.114 40.000 0.00 0.00 0.00 2.69
71 72 6.547510 GGCTAGGAAACATAACCATCTTTGAT 59.452 38.462 0.00 0.00 0.00 2.57
72 73 7.255277 GGCTAGGAAACATAACCATCTTTGATC 60.255 40.741 0.00 0.00 0.00 2.92
73 74 7.283127 GCTAGGAAACATAACCATCTTTGATCA 59.717 37.037 0.00 0.00 0.00 2.92
74 75 9.177608 CTAGGAAACATAACCATCTTTGATCAA 57.822 33.333 3.38 3.38 0.00 2.57
75 76 7.830739 AGGAAACATAACCATCTTTGATCAAC 58.169 34.615 7.89 0.00 0.00 3.18
76 77 6.747280 GGAAACATAACCATCTTTGATCAACG 59.253 38.462 7.89 6.62 0.00 4.10
77 78 7.361713 GGAAACATAACCATCTTTGATCAACGA 60.362 37.037 16.08 16.08 0.00 3.85
78 79 6.668541 ACATAACCATCTTTGATCAACGAG 57.331 37.500 18.24 10.23 0.00 4.18
79 80 5.065218 ACATAACCATCTTTGATCAACGAGC 59.935 40.000 18.24 0.00 0.00 5.03
80 81 3.340814 ACCATCTTTGATCAACGAGCT 57.659 42.857 18.24 2.03 0.00 4.09
81 82 4.471904 ACCATCTTTGATCAACGAGCTA 57.528 40.909 18.24 0.00 0.00 3.32
82 83 4.437239 ACCATCTTTGATCAACGAGCTAG 58.563 43.478 18.24 8.24 0.00 3.42
83 84 4.081420 ACCATCTTTGATCAACGAGCTAGT 60.081 41.667 18.24 10.56 0.00 2.57
84 85 4.505922 CCATCTTTGATCAACGAGCTAGTC 59.494 45.833 18.24 0.00 0.00 2.59
85 86 4.783764 TCTTTGATCAACGAGCTAGTCA 57.216 40.909 7.89 0.00 0.00 3.41
86 87 5.134202 TCTTTGATCAACGAGCTAGTCAA 57.866 39.130 7.89 0.00 0.00 3.18
87 88 5.164233 TCTTTGATCAACGAGCTAGTCAAG 58.836 41.667 7.89 0.00 0.00 3.02
88 89 4.521130 TTGATCAACGAGCTAGTCAAGT 57.479 40.909 3.38 0.00 0.00 3.16
89 90 5.638596 TTGATCAACGAGCTAGTCAAGTA 57.361 39.130 3.38 0.00 0.00 2.24
90 91 5.236655 TGATCAACGAGCTAGTCAAGTAG 57.763 43.478 0.00 0.00 0.00 2.57
91 92 4.941873 TGATCAACGAGCTAGTCAAGTAGA 59.058 41.667 0.00 0.00 0.00 2.59
92 93 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
93 94 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
94 95 3.630892 ACGAGCTAGTCAAGTAGAGGA 57.369 47.619 0.00 0.00 0.00 3.71
95 96 3.952931 ACGAGCTAGTCAAGTAGAGGAA 58.047 45.455 0.00 0.00 0.00 3.36
96 97 4.528920 ACGAGCTAGTCAAGTAGAGGAAT 58.471 43.478 0.00 0.00 0.00 3.01
97 98 5.682659 ACGAGCTAGTCAAGTAGAGGAATA 58.317 41.667 0.00 0.00 0.00 1.75
98 99 5.528320 ACGAGCTAGTCAAGTAGAGGAATAC 59.472 44.000 0.00 0.00 0.00 1.89
99 100 5.761234 CGAGCTAGTCAAGTAGAGGAATACT 59.239 44.000 0.00 0.00 37.61 2.12
100 101 6.930164 CGAGCTAGTCAAGTAGAGGAATACTA 59.070 42.308 0.00 0.00 34.90 1.82
101 102 7.117236 CGAGCTAGTCAAGTAGAGGAATACTAG 59.883 44.444 0.00 0.00 38.50 2.57
102 103 7.808218 AGCTAGTCAAGTAGAGGAATACTAGT 58.192 38.462 0.00 0.00 38.02 2.57
103 104 7.717875 AGCTAGTCAAGTAGAGGAATACTAGTG 59.282 40.741 5.39 0.00 38.02 2.74
104 105 7.716123 GCTAGTCAAGTAGAGGAATACTAGTGA 59.284 40.741 5.39 0.00 38.02 3.41
105 106 7.868906 AGTCAAGTAGAGGAATACTAGTGAC 57.131 40.000 5.39 9.26 40.57 3.67
106 107 7.403671 AGTCAAGTAGAGGAATACTAGTGACA 58.596 38.462 5.39 0.00 41.63 3.58
107 108 7.337436 AGTCAAGTAGAGGAATACTAGTGACAC 59.663 40.741 5.39 0.00 41.63 3.67
108 109 7.337436 GTCAAGTAGAGGAATACTAGTGACACT 59.663 40.741 13.68 13.68 40.28 3.55
109 110 7.553402 TCAAGTAGAGGAATACTAGTGACACTC 59.447 40.741 12.39 8.31 34.90 3.51
110 111 6.358991 AGTAGAGGAATACTAGTGACACTCC 58.641 44.000 12.39 6.28 34.21 3.85
111 112 4.200874 AGAGGAATACTAGTGACACTCCG 58.799 47.826 12.39 7.30 0.00 4.63
112 113 3.946558 GAGGAATACTAGTGACACTCCGT 59.053 47.826 12.39 12.86 0.00 4.69
113 114 4.342359 AGGAATACTAGTGACACTCCGTT 58.658 43.478 12.39 3.40 0.00 4.44
114 115 4.771054 AGGAATACTAGTGACACTCCGTTT 59.229 41.667 12.39 3.48 0.00 3.60
115 116 4.863131 GGAATACTAGTGACACTCCGTTTG 59.137 45.833 12.39 0.00 0.00 2.93
116 117 5.464030 AATACTAGTGACACTCCGTTTGT 57.536 39.130 12.39 5.61 0.00 2.83
117 118 3.366440 ACTAGTGACACTCCGTTTGTC 57.634 47.619 12.39 2.23 43.22 3.18
118 119 2.957006 ACTAGTGACACTCCGTTTGTCT 59.043 45.455 12.39 0.00 43.30 3.41
119 120 4.139786 ACTAGTGACACTCCGTTTGTCTA 58.860 43.478 12.39 0.00 43.30 2.59
120 121 4.765856 ACTAGTGACACTCCGTTTGTCTAT 59.234 41.667 12.39 0.00 43.30 1.98
121 122 3.914312 AGTGACACTCCGTTTGTCTATG 58.086 45.455 1.07 0.00 43.30 2.23
122 123 3.321111 AGTGACACTCCGTTTGTCTATGT 59.679 43.478 1.07 0.00 43.30 2.29
123 124 4.521639 AGTGACACTCCGTTTGTCTATGTA 59.478 41.667 1.07 0.00 43.30 2.29
124 125 5.185249 AGTGACACTCCGTTTGTCTATGTAT 59.815 40.000 1.07 0.00 43.30 2.29
125 126 5.867716 GTGACACTCCGTTTGTCTATGTATT 59.132 40.000 0.00 0.00 43.30 1.89
126 127 6.034683 GTGACACTCCGTTTGTCTATGTATTC 59.965 42.308 0.00 0.00 43.30 1.75
127 128 6.032956 ACACTCCGTTTGTCTATGTATTCA 57.967 37.500 0.00 0.00 0.00 2.57
128 129 5.867716 ACACTCCGTTTGTCTATGTATTCAC 59.132 40.000 0.00 0.00 0.00 3.18
129 130 5.867174 CACTCCGTTTGTCTATGTATTCACA 59.133 40.000 0.00 0.00 39.52 3.58
130 131 5.867716 ACTCCGTTTGTCTATGTATTCACAC 59.132 40.000 0.00 0.00 37.54 3.82
131 132 5.785243 TCCGTTTGTCTATGTATTCACACA 58.215 37.500 0.00 0.00 37.54 3.72
132 133 6.403049 TCCGTTTGTCTATGTATTCACACAT 58.597 36.000 0.00 0.00 41.88 3.21
133 134 6.312672 TCCGTTTGTCTATGTATTCACACATG 59.687 38.462 0.00 0.00 39.46 3.21
134 135 6.092122 CCGTTTGTCTATGTATTCACACATGT 59.908 38.462 0.00 0.00 39.46 3.21
135 136 7.276878 CCGTTTGTCTATGTATTCACACATGTA 59.723 37.037 0.00 0.00 39.46 2.29
136 137 8.817100 CGTTTGTCTATGTATTCACACATGTAT 58.183 33.333 0.00 0.00 39.46 2.29
138 139 9.883142 TTTGTCTATGTATTCACACATGTATCA 57.117 29.630 0.00 0.00 39.46 2.15
140 141 9.480053 TGTCTATGTATTCACACATGTATCATG 57.520 33.333 0.00 7.99 39.46 3.07
141 142 9.481340 GTCTATGTATTCACACATGTATCATGT 57.519 33.333 9.21 9.21 39.46 3.21
145 146 7.984391 TGTATTCACACATGTATCATGTTTCC 58.016 34.615 11.89 0.00 0.00 3.13
146 147 5.544136 TTCACACATGTATCATGTTTCCG 57.456 39.130 11.89 4.94 0.00 4.30
147 148 3.938334 TCACACATGTATCATGTTTCCGG 59.062 43.478 11.89 0.00 0.00 5.14
148 149 3.689161 CACACATGTATCATGTTTCCGGT 59.311 43.478 11.89 5.17 0.00 5.28
149 150 4.155826 CACACATGTATCATGTTTCCGGTT 59.844 41.667 11.89 0.00 0.00 4.44
150 151 5.352846 CACACATGTATCATGTTTCCGGTTA 59.647 40.000 11.89 0.00 0.00 2.85
151 152 5.941058 ACACATGTATCATGTTTCCGGTTAA 59.059 36.000 11.89 0.00 0.00 2.01
152 153 6.601613 ACACATGTATCATGTTTCCGGTTAAT 59.398 34.615 11.89 0.00 0.00 1.40
153 154 7.771361 ACACATGTATCATGTTTCCGGTTAATA 59.229 33.333 11.89 0.00 0.00 0.98
154 155 8.616942 CACATGTATCATGTTTCCGGTTAATAA 58.383 33.333 11.89 0.00 0.00 1.40
155 156 9.179909 ACATGTATCATGTTTCCGGTTAATAAA 57.820 29.630 0.00 0.00 0.00 1.40
163 164 9.233232 CATGTTTCCGGTTAATAAAATTCTAGC 57.767 33.333 0.00 0.00 0.00 3.42
164 165 8.338072 TGTTTCCGGTTAATAAAATTCTAGCA 57.662 30.769 0.00 0.00 0.00 3.49
165 166 8.962679 TGTTTCCGGTTAATAAAATTCTAGCAT 58.037 29.630 0.00 0.00 0.00 3.79
166 167 9.233232 GTTTCCGGTTAATAAAATTCTAGCATG 57.767 33.333 0.00 0.00 0.00 4.06
167 168 8.740123 TTCCGGTTAATAAAATTCTAGCATGA 57.260 30.769 0.00 0.00 0.00 3.07
168 169 8.740123 TCCGGTTAATAAAATTCTAGCATGAA 57.260 30.769 0.00 0.00 0.00 2.57
169 170 9.349713 TCCGGTTAATAAAATTCTAGCATGAAT 57.650 29.630 0.00 0.00 38.19 2.57
228 229 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
240 241 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
343 344 0.390492 TGATATGCTGCACGAGGAGG 59.610 55.000 3.57 0.00 33.18 4.30
389 390 1.453928 GGGTTAGGCTGCATGGGAC 60.454 63.158 0.50 0.00 0.00 4.46
390 391 1.609783 GGTTAGGCTGCATGGGACT 59.390 57.895 0.50 0.00 0.00 3.85
448 449 2.827921 GGTTTCAAGATGTTGGGCAGAT 59.172 45.455 2.33 0.00 34.09 2.90
454 456 4.098349 TCAAGATGTTGGGCAGATAATTGC 59.902 41.667 2.33 0.00 36.56 3.56
458 460 1.476488 GTTGGGCAGATAATTGCGGTT 59.524 47.619 0.00 0.00 45.00 4.44
529 531 1.891150 CAAAGCCCTGAACAAGCTCAT 59.109 47.619 0.00 0.00 35.30 2.90
534 536 1.250328 CCTGAACAAGCTCATTGGCA 58.750 50.000 0.00 0.00 43.68 4.92
551 553 0.618458 GCATGGTGGAGGTCTGGTTA 59.382 55.000 0.00 0.00 0.00 2.85
566 568 5.048507 GTCTGGTTAAATCACGAGGGATAC 58.951 45.833 0.00 0.00 0.00 2.24
668 671 0.323725 CCCAAATGAGGGTGACAGGG 60.324 60.000 0.00 0.00 44.24 4.45
716 721 2.092429 ACAACAAGCAAAGTGGAGGAGA 60.092 45.455 0.00 0.00 0.00 3.71
729 734 0.192064 GAGGAGATCCAGGGATGGGA 59.808 60.000 5.35 0.00 38.89 4.37
740 745 0.251787 GGGATGGGAAAAGCTGTGGT 60.252 55.000 0.00 0.00 0.00 4.16
750 755 0.188342 AAGCTGTGGTTGGTGGGAAT 59.812 50.000 0.00 0.00 0.00 3.01
753 758 1.463674 CTGTGGTTGGTGGGAATAGC 58.536 55.000 0.00 0.00 0.00 2.97
755 760 1.029947 GTGGTTGGTGGGAATAGCGG 61.030 60.000 0.00 0.00 0.00 5.52
756 761 1.301954 GGTTGGTGGGAATAGCGGT 59.698 57.895 0.00 0.00 0.00 5.68
763 768 4.547367 GGAATAGCGGTGCGGCCT 62.547 66.667 0.00 0.00 34.25 5.19
780 785 1.626654 CCTCGAACGGTGATGTGCAC 61.627 60.000 10.75 10.75 46.98 4.57
840 845 4.274147 AGGACACTTCTATCGACACTGAT 58.726 43.478 0.00 0.00 0.00 2.90
918 925 2.932234 CGCGGTCAGTGTTCCTCCT 61.932 63.158 0.00 0.00 0.00 3.69
930 937 2.930019 CCTCCTCTGGCCCACACA 60.930 66.667 0.00 0.00 0.00 3.72
952 959 3.248266 CTGGCAAGTGCTTTTTATGAGC 58.752 45.455 2.85 0.00 41.70 4.26
984 991 2.666190 GCGCTGCCAGTGTCTTCA 60.666 61.111 7.17 0.00 0.00 3.02
985 992 2.037136 GCGCTGCCAGTGTCTTCAT 61.037 57.895 7.17 0.00 0.00 2.57
1127 1136 3.710722 CCCTGCTTCTGGCCGTCT 61.711 66.667 0.00 0.00 40.92 4.18
1165 1174 2.044946 GGCCGCCCAAGAAGACAT 60.045 61.111 0.00 0.00 0.00 3.06
1215 1224 4.681978 GTGCGGAAGTCGGTGCCT 62.682 66.667 0.00 0.00 39.69 4.75
1243 1252 2.694920 TTGTGTGGGGAGTTGGGCA 61.695 57.895 0.00 0.00 0.00 5.36
1362 1372 1.066143 GGTGACATGTCGTCCTTGGAT 60.066 52.381 23.82 0.00 44.71 3.41
1365 1375 3.096852 TGACATGTCGTCCTTGGATAGT 58.903 45.455 20.54 0.00 44.71 2.12
1419 1431 3.181474 GGACCTCAGGTAATCCTTTCTCG 60.181 52.174 0.00 0.00 43.07 4.04
1464 1476 1.735973 CGACGATCATCTGGCCTCA 59.264 57.895 3.32 0.00 0.00 3.86
1504 1516 1.805254 GCGGTCTCGGCTAGTAACA 59.195 57.895 0.00 0.00 36.79 2.41
1507 1519 2.604132 GCGGTCTCGGCTAGTAACATAC 60.604 54.545 0.00 0.00 36.79 2.39
1526 1538 6.910191 ACATACATATCATTTCCCTGGTTCA 58.090 36.000 0.00 0.00 0.00 3.18
1579 1591 3.044059 GCGGCAGCCAGATGTGTTC 62.044 63.158 13.30 0.00 37.42 3.18
1590 1602 1.639298 GATGTGTTCCTGCTGCCGAC 61.639 60.000 0.00 0.00 0.00 4.79
1681 1693 1.627834 CTGTCCTTCCTTCTTCCAGCT 59.372 52.381 0.00 0.00 0.00 4.24
1684 1696 2.567615 GTCCTTCCTTCTTCCAGCTGTA 59.432 50.000 13.81 0.00 0.00 2.74
1687 1699 2.024176 TCCTTCTTCCAGCTGTACCA 57.976 50.000 13.81 0.00 0.00 3.25
1738 1750 1.478916 GCTCTAGAGGAGTTCGCCTTT 59.521 52.381 21.23 0.00 43.62 3.11
1757 1769 5.472137 GCCTTTGGAACCGCATTATCTAATA 59.528 40.000 0.00 0.00 0.00 0.98
1787 1799 3.193691 TGTTTTGGAACATTCGTGGTTGT 59.806 39.130 0.00 0.00 40.71 3.32
1791 1803 1.950909 GGAACATTCGTGGTTGTGGAA 59.049 47.619 0.00 0.00 0.00 3.53
1792 1804 2.556622 GGAACATTCGTGGTTGTGGAAT 59.443 45.455 0.00 0.00 0.00 3.01
1796 1808 3.244561 ACATTCGTGGTTGTGGAATCTCT 60.245 43.478 0.00 0.00 0.00 3.10
1800 1812 1.073923 GTGGTTGTGGAATCTCTGGGT 59.926 52.381 0.00 0.00 0.00 4.51
1820 1832 1.078759 GTCGTACGCAGCTGCAAGAT 61.079 55.000 36.03 20.90 42.21 2.40
1849 1861 0.097674 AAAGAGCGCATCGATGTTGC 59.902 50.000 26.96 26.96 27.79 4.17
1851 1863 0.812811 AGAGCGCATCGATGTTGCAT 60.813 50.000 31.93 22.59 40.14 3.96
1923 1935 4.439057 GCTAGACCCGTTACAATGATTCA 58.561 43.478 0.00 0.00 0.00 2.57
1950 1962 3.640407 GGGTGCTGTCCTCTGGCA 61.640 66.667 0.00 0.00 0.00 4.92
2026 2053 3.574614 GTGTGTTTTTCATTGCGGCTAT 58.425 40.909 0.00 0.00 0.00 2.97
2069 2096 0.966179 GGATTTGGGTGGTGGTGTTC 59.034 55.000 0.00 0.00 0.00 3.18
2079 2106 1.070445 TGGTGGTGTTCGTTTACGGAT 59.930 47.619 2.09 0.00 40.29 4.18
2156 2184 1.195115 ACAAATGAGCGCTCCTCCTA 58.805 50.000 33.23 15.93 39.98 2.94
2174 2202 2.752030 CTACCTCTGATTGTGGGAGGA 58.248 52.381 14.12 0.00 46.82 3.71
2232 2260 1.623811 ACGACAATGTGGACTAGGCTT 59.376 47.619 1.61 0.00 0.00 4.35
2404 2442 1.985895 CCCTCTTTGTTCCCTAGTGGT 59.014 52.381 0.00 0.00 34.77 4.16
2450 2488 2.243810 CTCCCCCTTATCTTCTCCTCG 58.756 57.143 0.00 0.00 0.00 4.63
2467 2505 0.681887 TCGGGAGAGGATTACGTGCA 60.682 55.000 0.00 0.00 0.00 4.57
2508 2546 5.200483 ACTTTGAAATGGTCTGGTTCAAGA 58.800 37.500 0.00 0.00 41.06 3.02
2532 2570 1.303317 GGCTTCGAACCCATGGTGT 60.303 57.895 11.73 5.47 35.34 4.16
2599 2637 1.536073 CCGGCTGAGTTCTGGACTGA 61.536 60.000 0.00 0.00 39.19 3.41
2689 2735 3.009695 GCTAGGCTAGTGGAGGAGATAGA 59.990 52.174 21.92 0.00 0.00 1.98
2707 2753 8.589338 GGAGATAGAGGCTATTGATTTACAAGA 58.411 37.037 0.00 0.00 42.02 3.02
2719 2765 5.972935 TGATTTACAAGACGATTCTAGGCA 58.027 37.500 0.00 0.00 0.00 4.75
2740 2786 1.425066 TCTGGCAGAAAGTGAATGGGT 59.575 47.619 16.28 0.00 0.00 4.51
2764 2810 4.382362 GCTTTGCTATGCCCTTGAAAATCT 60.382 41.667 0.00 0.00 0.00 2.40
2790 2836 4.074970 CCTTGCCATATTAAGAGCCGAAT 58.925 43.478 0.00 0.00 0.00 3.34
2806 2852 4.065088 GCCGAATAAGAATACTGGCATCA 58.935 43.478 0.00 0.00 40.66 3.07
2819 2865 0.541296 GGCATCATAGGGGCAGCATT 60.541 55.000 0.00 0.00 0.00 3.56
2822 2868 2.229784 GCATCATAGGGGCAGCATTAAC 59.770 50.000 0.00 0.00 0.00 2.01
2824 2870 4.807303 GCATCATAGGGGCAGCATTAACTA 60.807 45.833 0.00 0.00 0.00 2.24
2870 2917 2.221169 GGATACTTCCATGCATTCGCA 58.779 47.619 0.00 0.00 43.51 5.10
2990 3039 6.680874 TTTATTGGTTTGTTGTGTACGACT 57.319 33.333 4.20 0.00 0.00 4.18
3016 3065 1.815003 GAAAGTCATGTGCCTTCAGGG 59.185 52.381 0.00 0.00 35.18 4.45
3033 3082 0.260523 GGGGGATTTTTGGGATCCGA 59.739 55.000 5.45 0.00 43.28 4.55
3057 3106 1.700955 TAGGGTATCTCAGGCGGAAC 58.299 55.000 0.00 0.00 0.00 3.62
3075 3125 0.114954 ACATGATTGGTTGGCCCTGT 59.885 50.000 0.00 0.00 0.00 4.00
3195 3254 2.349817 GGTCGTGCTTCAAACATGTCTG 60.350 50.000 0.00 0.00 0.00 3.51
3228 3287 1.326951 AACGGGTTTGCACTTGGCTT 61.327 50.000 0.00 0.00 45.15 4.35
3230 3289 1.733402 CGGGTTTGCACTTGGCTTGA 61.733 55.000 0.00 0.00 45.15 3.02
3233 3292 1.340889 GGTTTGCACTTGGCTTGATGA 59.659 47.619 0.00 0.00 45.15 2.92
3248 3307 0.802607 GATGAACCTGTCGCGACTCC 60.803 60.000 36.27 21.08 0.00 3.85
3275 3334 1.075659 GCCATTAGCCTCATCCCCC 59.924 63.158 0.00 0.00 34.35 5.40
3276 3335 1.376466 CCATTAGCCTCATCCCCCG 59.624 63.158 0.00 0.00 0.00 5.73
3289 3348 4.016706 CCCCGAGGTGAAAGGCGT 62.017 66.667 0.00 0.00 0.00 5.68
3307 3366 5.784177 AGGCGTGGATAACATTAGACTATG 58.216 41.667 0.00 0.00 0.00 2.23
3330 3390 3.117512 CAGGCCCATCACCCTTATTAACT 60.118 47.826 0.00 0.00 0.00 2.24
3333 3393 4.386424 GGCCCATCACCCTTATTAACTTCT 60.386 45.833 0.00 0.00 0.00 2.85
3342 3402 8.587608 TCACCCTTATTAACTTCTCGTTTAAGA 58.412 33.333 0.00 0.00 37.05 2.10
3416 3476 0.951558 TCAAGAGCCAAACCGCTTTC 59.048 50.000 0.00 0.00 39.87 2.62
3470 3530 4.560136 TGCGCTTCTAGAGATAGTTCAG 57.440 45.455 9.73 0.00 0.00 3.02
3545 3606 2.822764 CCTATGACCGAGTAAACTGGC 58.177 52.381 0.00 0.00 0.00 4.85
3593 3654 1.901464 GGTTTTGAGGCGGGCTTCA 60.901 57.895 5.24 0.93 0.00 3.02
3723 3784 5.102953 AGCTTGCCACTCATATTCAACTA 57.897 39.130 0.00 0.00 0.00 2.24
3775 3836 4.335647 GCCCGGGCGGATGATCAT 62.336 66.667 33.60 8.25 37.50 2.45
3784 3846 2.166459 GGCGGATGATCATATCGAAGGA 59.834 50.000 25.60 0.00 0.00 3.36
3820 3886 1.706995 TTCCTGGTGGGGTTACGCAA 61.707 55.000 1.15 0.00 41.54 4.85
3823 3889 0.536460 CTGGTGGGGTTACGCAACTT 60.536 55.000 6.89 0.00 46.50 2.66
3831 3897 2.738314 GGGTTACGCAACTTCAATACGT 59.262 45.455 0.00 0.00 40.53 3.57
3836 3902 1.717113 CGCAACTTCAATACGTCGACA 59.283 47.619 17.16 0.00 0.00 4.35
3990 4056 0.461548 CAAGAGAGTAGGCATGCGGA 59.538 55.000 12.44 0.00 0.00 5.54
4101 4170 4.237018 GAACCCCTATATGGTAAGGTGGA 58.763 47.826 0.00 0.00 34.15 4.02
4289 4360 5.791336 AGGAACTGGAATCAAAAGGAAAC 57.209 39.130 0.00 0.00 37.18 2.78
4423 4494 0.611896 CCCAAAATGAGTCGGGGCTT 60.612 55.000 0.00 0.00 34.81 4.35
4425 4496 1.202348 CCAAAATGAGTCGGGGCTTTC 59.798 52.381 0.00 0.00 0.00 2.62
4475 4547 4.839668 CCTGACGGGAATTTGTTTAACA 57.160 40.909 0.00 0.00 37.23 2.41
4488 4560 5.470047 TTGTTTAACACCAAACACAAGGT 57.530 34.783 0.00 0.00 45.52 3.50
4607 4679 1.098129 CAGCTGGATCGACTCGAGGA 61.098 60.000 18.41 5.54 39.91 3.71
4637 4710 0.526524 CTCTTACCCTGCGCTCTTCG 60.527 60.000 9.73 0.00 42.12 3.79
4653 4726 6.269315 CGCTCTTCGAATTAGCTATGGATAT 58.731 40.000 22.76 0.00 41.67 1.63
4692 4765 1.935327 GCTCTTAGGACGTCGCCACT 61.935 60.000 9.92 3.28 0.00 4.00
4710 4783 3.591023 CACTGGCAATTCATTTCATGCA 58.409 40.909 0.00 0.00 40.51 3.96
4711 4784 3.369756 CACTGGCAATTCATTTCATGCAC 59.630 43.478 0.00 0.00 40.51 4.57
4723 4808 3.640407 ATGCACGCCCCTGTCTGT 61.640 61.111 0.00 0.00 0.00 3.41
4728 4813 1.913262 ACGCCCCTGTCTGTGATCA 60.913 57.895 0.00 0.00 0.00 2.92
4774 4859 5.964477 TGATCACTAAAATAGGGACTGACCT 59.036 40.000 0.00 0.00 41.83 3.85
4802 4887 1.911766 GGGGGTTGACTCGGTCTCA 60.912 63.158 5.77 0.00 33.15 3.27
4956 5043 5.994668 TGGCAAATTTTTAAAAATCGCCTCT 59.005 32.000 36.64 19.94 46.49 3.69
5041 5128 4.147322 CGTGGACGCGAACCATGC 62.147 66.667 25.81 16.70 39.69 4.06
5050 5137 1.701704 GCGAACCATGCCTTTCTTTG 58.298 50.000 0.00 0.00 0.00 2.77
5118 5207 0.396974 ACCAAAACTGAAGCCCTGCA 60.397 50.000 0.00 0.00 0.00 4.41
5160 5250 5.132648 TCAGATTATGCATACCCAGAAAGGT 59.867 40.000 5.74 0.00 44.37 3.50
5163 5253 5.702065 TTATGCATACCCAGAAAGGTACA 57.298 39.130 5.74 0.00 45.08 2.90
5188 5278 0.391793 TCGGATTGTATGGCGTTGCA 60.392 50.000 0.00 0.00 0.00 4.08
5203 5294 2.028043 GCATTGGGGCGCTATTGC 59.972 61.111 16.00 16.00 0.00 3.56
5364 5456 0.842635 GGCCCTGGACAAGATCAGAT 59.157 55.000 0.00 0.00 33.11 2.90
5372 5464 3.519107 TGGACAAGATCAGATGCACCTTA 59.481 43.478 0.00 0.00 0.00 2.69
5480 5576 3.260884 CCTTTGTTGTACCCTGCTCTCTA 59.739 47.826 0.00 0.00 0.00 2.43
5544 5643 8.902540 TGTAAGACTATTGAAACTTGTGATGT 57.097 30.769 0.00 0.00 0.00 3.06
5694 5794 1.696063 AATGGCCCAATCTTCCATCG 58.304 50.000 0.00 0.00 39.51 3.84
5709 5809 1.478471 CCATCGGATTTACATGGGGCA 60.478 52.381 0.00 0.00 34.47 5.36
5722 5822 5.653255 ACATGGGGCATAGAGTTTAGAAT 57.347 39.130 0.00 0.00 0.00 2.40
5730 5830 8.308207 GGGGCATAGAGTTTAGAATAGACTTAG 58.692 40.741 0.00 0.00 35.99 2.18
5752 5853 6.227298 AGAGTTGGATAGTGATTCGTGAAT 57.773 37.500 0.00 0.00 0.00 2.57
5759 5860 5.631512 GGATAGTGATTCGTGAATACAGAGC 59.368 44.000 0.00 0.00 0.00 4.09
5764 5865 5.805486 GTGATTCGTGAATACAGAGCAACTA 59.195 40.000 0.00 0.00 0.00 2.24
5769 5870 4.201494 CGTGAATACAGAGCAACTACAACG 60.201 45.833 0.00 0.00 0.00 4.10
5802 5903 5.698741 TCACATGATCAGGACATAAAGGT 57.301 39.130 15.42 0.00 0.00 3.50
5819 5920 3.297134 AGGTGTTCCACATTTGACAGT 57.703 42.857 0.00 0.00 35.86 3.55
5823 5924 5.003804 GGTGTTCCACATTTGACAGTAGAT 58.996 41.667 0.00 0.00 35.86 1.98
5830 5932 4.408921 CACATTTGACAGTAGATAGGGGGA 59.591 45.833 0.00 0.00 0.00 4.81
5956 6058 9.979270 GAGTCAATATATTAGCCATCAAAATCG 57.021 33.333 0.00 0.00 0.00 3.34
6022 6124 0.038744 CTCTTCAGGCCACCCATGTT 59.961 55.000 5.01 0.00 0.00 2.71
6171 6274 1.152673 GATGGCCCATGAACCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
6183 6286 5.949354 CCATGAACCCCTCTAAAACACAATA 59.051 40.000 0.00 0.00 0.00 1.90
6199 6302 6.391227 ACACAATAATAGCAGTTAATGGCC 57.609 37.500 0.00 0.00 0.00 5.36
6253 6360 9.889128 ACACACATATATATACTATGCATGCAA 57.111 29.630 26.68 8.62 31.12 4.08
6271 6378 6.810182 GCATGCAACAAACTTTTCTCATCTAT 59.190 34.615 14.21 0.00 0.00 1.98
6276 6383 9.415544 GCAACAAACTTTTCTCATCTATGAAAT 57.584 29.630 0.00 0.00 36.18 2.17
6310 6418 9.155975 ACTTCATCGTTTATATGGATTAGCATC 57.844 33.333 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
1 2 5.880164 TTAACGGGATCACATCATTAGGA 57.120 39.130 0.00 0.00 0.00 2.94
2 3 6.230472 TGATTAACGGGATCACATCATTAGG 58.770 40.000 0.00 0.00 0.00 2.69
3 4 7.728847 TTGATTAACGGGATCACATCATTAG 57.271 36.000 0.00 0.00 33.51 1.73
4 5 8.567104 CATTTGATTAACGGGATCACATCATTA 58.433 33.333 0.00 0.00 33.51 1.90
5 6 7.285172 TCATTTGATTAACGGGATCACATCATT 59.715 33.333 0.00 0.00 33.51 2.57
6 7 6.772233 TCATTTGATTAACGGGATCACATCAT 59.228 34.615 0.00 0.00 33.51 2.45
7 8 6.038161 GTCATTTGATTAACGGGATCACATCA 59.962 38.462 0.00 0.00 33.51 3.07
8 9 6.038161 TGTCATTTGATTAACGGGATCACATC 59.962 38.462 0.00 0.00 33.51 3.06
9 10 5.885352 TGTCATTTGATTAACGGGATCACAT 59.115 36.000 0.00 0.00 33.51 3.21
10 11 5.249420 TGTCATTTGATTAACGGGATCACA 58.751 37.500 0.00 0.00 33.51 3.58
11 12 5.811399 TGTCATTTGATTAACGGGATCAC 57.189 39.130 0.00 0.00 33.51 3.06
12 13 5.943416 AGTTGTCATTTGATTAACGGGATCA 59.057 36.000 0.00 0.00 32.73 2.92
13 14 6.093495 TGAGTTGTCATTTGATTAACGGGATC 59.907 38.462 0.00 0.00 32.73 3.36
14 15 5.943416 TGAGTTGTCATTTGATTAACGGGAT 59.057 36.000 0.00 0.00 32.73 3.85
15 16 5.309638 TGAGTTGTCATTTGATTAACGGGA 58.690 37.500 0.00 0.00 32.73 5.14
16 17 5.621197 TGAGTTGTCATTTGATTAACGGG 57.379 39.130 0.00 0.00 32.73 5.28
17 18 6.611381 ACATGAGTTGTCATTTGATTAACGG 58.389 36.000 0.00 0.00 40.84 4.44
31 32 4.290093 TCCTAGCCATAGACATGAGTTGT 58.710 43.478 0.00 0.00 42.79 3.32
32 33 4.944619 TCCTAGCCATAGACATGAGTTG 57.055 45.455 0.00 0.00 33.67 3.16
33 34 5.189736 TGTTTCCTAGCCATAGACATGAGTT 59.810 40.000 0.00 0.00 33.67 3.01
34 35 4.716784 TGTTTCCTAGCCATAGACATGAGT 59.283 41.667 0.00 0.00 33.67 3.41
35 36 5.282055 TGTTTCCTAGCCATAGACATGAG 57.718 43.478 0.00 0.00 33.67 2.90
36 37 5.894298 ATGTTTCCTAGCCATAGACATGA 57.106 39.130 0.00 0.00 33.67 3.07
37 38 6.428159 GGTTATGTTTCCTAGCCATAGACATG 59.572 42.308 0.00 0.00 30.64 3.21
38 39 6.101150 TGGTTATGTTTCCTAGCCATAGACAT 59.899 38.462 0.00 0.00 32.04 3.06
39 40 5.427157 TGGTTATGTTTCCTAGCCATAGACA 59.573 40.000 0.00 0.00 0.00 3.41
40 41 5.925509 TGGTTATGTTTCCTAGCCATAGAC 58.074 41.667 0.00 0.00 0.00 2.59
41 42 6.558775 AGATGGTTATGTTTCCTAGCCATAGA 59.441 38.462 0.00 0.00 39.44 1.98
42 43 6.773638 AGATGGTTATGTTTCCTAGCCATAG 58.226 40.000 0.00 0.00 39.44 2.23
43 44 6.763715 AGATGGTTATGTTTCCTAGCCATA 57.236 37.500 0.00 0.00 39.44 2.74
44 45 5.653255 AGATGGTTATGTTTCCTAGCCAT 57.347 39.130 0.00 0.00 41.28 4.40
45 46 5.450818 AAGATGGTTATGTTTCCTAGCCA 57.549 39.130 0.00 0.00 34.50 4.75
46 47 5.885912 TCAAAGATGGTTATGTTTCCTAGCC 59.114 40.000 0.00 0.00 28.23 3.93
47 48 7.283127 TGATCAAAGATGGTTATGTTTCCTAGC 59.717 37.037 0.00 0.00 28.23 3.42
48 49 8.737168 TGATCAAAGATGGTTATGTTTCCTAG 57.263 34.615 0.00 0.00 28.23 3.02
49 50 8.956426 GTTGATCAAAGATGGTTATGTTTCCTA 58.044 33.333 10.35 0.00 28.23 2.94
50 51 7.362056 CGTTGATCAAAGATGGTTATGTTTCCT 60.362 37.037 15.34 0.00 28.23 3.36
51 52 6.747280 CGTTGATCAAAGATGGTTATGTTTCC 59.253 38.462 15.34 0.00 28.23 3.13
52 53 7.526608 TCGTTGATCAAAGATGGTTATGTTTC 58.473 34.615 18.50 0.00 28.23 2.78
53 54 7.447374 TCGTTGATCAAAGATGGTTATGTTT 57.553 32.000 18.50 0.00 30.61 2.83
54 55 6.403636 GCTCGTTGATCAAAGATGGTTATGTT 60.404 38.462 21.83 0.00 0.00 2.71
55 56 5.065218 GCTCGTTGATCAAAGATGGTTATGT 59.935 40.000 21.83 0.00 0.00 2.29
56 57 5.295292 AGCTCGTTGATCAAAGATGGTTATG 59.705 40.000 21.83 11.16 0.00 1.90
57 58 5.431765 AGCTCGTTGATCAAAGATGGTTAT 58.568 37.500 21.83 4.91 0.00 1.89
58 59 4.832248 AGCTCGTTGATCAAAGATGGTTA 58.168 39.130 21.83 1.90 0.00 2.85
59 60 3.679389 AGCTCGTTGATCAAAGATGGTT 58.321 40.909 21.83 8.86 0.00 3.67
60 61 3.340814 AGCTCGTTGATCAAAGATGGT 57.659 42.857 21.83 17.63 0.00 3.55
61 62 4.437239 ACTAGCTCGTTGATCAAAGATGG 58.563 43.478 21.83 14.18 0.00 3.51
62 63 5.105063 TGACTAGCTCGTTGATCAAAGATG 58.895 41.667 21.83 16.63 0.00 2.90
63 64 5.330455 TGACTAGCTCGTTGATCAAAGAT 57.670 39.130 21.83 12.82 0.00 2.40
64 65 4.783764 TGACTAGCTCGTTGATCAAAGA 57.216 40.909 20.62 20.62 0.00 2.52
65 66 4.926238 ACTTGACTAGCTCGTTGATCAAAG 59.074 41.667 10.35 12.64 0.00 2.77
66 67 4.883083 ACTTGACTAGCTCGTTGATCAAA 58.117 39.130 10.35 0.00 0.00 2.69
67 68 4.521130 ACTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
68 69 4.941873 TCTACTTGACTAGCTCGTTGATCA 59.058 41.667 0.00 0.00 0.00 2.92
69 70 5.487153 TCTACTTGACTAGCTCGTTGATC 57.513 43.478 0.00 0.00 0.00 2.92
70 71 4.336993 CCTCTACTTGACTAGCTCGTTGAT 59.663 45.833 0.00 0.00 0.00 2.57
71 72 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
72 73 3.690139 TCCTCTACTTGACTAGCTCGTTG 59.310 47.826 0.00 0.00 0.00 4.10
73 74 3.952931 TCCTCTACTTGACTAGCTCGTT 58.047 45.455 0.00 0.00 0.00 3.85
74 75 3.630892 TCCTCTACTTGACTAGCTCGT 57.369 47.619 0.00 0.00 0.00 4.18
75 76 5.761234 AGTATTCCTCTACTTGACTAGCTCG 59.239 44.000 0.00 0.00 0.00 5.03
76 77 7.935210 ACTAGTATTCCTCTACTTGACTAGCTC 59.065 40.741 0.00 0.00 38.86 4.09
77 78 7.717875 CACTAGTATTCCTCTACTTGACTAGCT 59.282 40.741 0.00 0.00 38.86 3.32
78 79 7.716123 TCACTAGTATTCCTCTACTTGACTAGC 59.284 40.741 0.00 0.00 38.86 3.42
79 80 9.048446 GTCACTAGTATTCCTCTACTTGACTAG 57.952 40.741 0.00 0.00 36.95 2.57
80 81 8.546322 TGTCACTAGTATTCCTCTACTTGACTA 58.454 37.037 13.21 0.00 38.79 2.59
81 82 7.337436 GTGTCACTAGTATTCCTCTACTTGACT 59.663 40.741 13.21 0.00 38.79 3.41
82 83 7.337436 AGTGTCACTAGTATTCCTCTACTTGAC 59.663 40.741 2.87 8.24 38.64 3.18
83 84 7.403671 AGTGTCACTAGTATTCCTCTACTTGA 58.596 38.462 2.87 0.00 33.96 3.02
84 85 7.201750 GGAGTGTCACTAGTATTCCTCTACTTG 60.202 44.444 5.21 0.00 33.96 3.16
85 86 6.829811 GGAGTGTCACTAGTATTCCTCTACTT 59.170 42.308 5.21 0.00 33.96 2.24
86 87 6.358991 GGAGTGTCACTAGTATTCCTCTACT 58.641 44.000 5.21 0.00 36.04 2.57
87 88 5.236911 CGGAGTGTCACTAGTATTCCTCTAC 59.763 48.000 5.21 0.00 0.00 2.59
88 89 5.104610 ACGGAGTGTCACTAGTATTCCTCTA 60.105 44.000 5.21 0.00 42.51 2.43
89 90 4.200874 CGGAGTGTCACTAGTATTCCTCT 58.799 47.826 5.21 0.00 0.00 3.69
90 91 3.946558 ACGGAGTGTCACTAGTATTCCTC 59.053 47.826 5.21 0.00 42.51 3.71
91 92 3.965694 ACGGAGTGTCACTAGTATTCCT 58.034 45.455 5.21 0.00 42.51 3.36
92 93 4.715527 AACGGAGTGTCACTAGTATTCC 57.284 45.455 5.21 0.95 45.00 3.01
93 94 5.467705 ACAAACGGAGTGTCACTAGTATTC 58.532 41.667 5.21 0.00 45.00 1.75
94 95 5.243283 AGACAAACGGAGTGTCACTAGTATT 59.757 40.000 5.21 4.62 45.00 1.89
95 96 4.765856 AGACAAACGGAGTGTCACTAGTAT 59.234 41.667 5.21 0.00 45.00 2.12
96 97 4.139786 AGACAAACGGAGTGTCACTAGTA 58.860 43.478 5.21 0.00 45.00 1.82
97 98 2.957006 AGACAAACGGAGTGTCACTAGT 59.043 45.455 5.21 6.62 45.00 2.57
98 99 3.644884 AGACAAACGGAGTGTCACTAG 57.355 47.619 5.21 5.95 45.00 2.57
99 100 4.521639 ACATAGACAAACGGAGTGTCACTA 59.478 41.667 5.21 3.58 45.00 2.74
100 101 3.321111 ACATAGACAAACGGAGTGTCACT 59.679 43.478 4.81 4.81 45.00 3.41
101 102 3.650139 ACATAGACAAACGGAGTGTCAC 58.350 45.455 15.08 0.00 45.00 3.67
102 103 5.654603 ATACATAGACAAACGGAGTGTCA 57.345 39.130 15.08 4.81 45.00 3.58
103 104 6.034683 GTGAATACATAGACAAACGGAGTGTC 59.965 42.308 7.16 7.16 45.00 3.67
104 105 5.867716 GTGAATACATAGACAAACGGAGTGT 59.132 40.000 0.00 0.00 45.00 3.55
105 106 5.867174 TGTGAATACATAGACAAACGGAGTG 59.133 40.000 0.00 0.00 45.00 3.51
106 107 5.867716 GTGTGAATACATAGACAAACGGAGT 59.132 40.000 0.00 0.00 40.86 3.85
107 108 5.867174 TGTGTGAATACATAGACAAACGGAG 59.133 40.000 0.00 0.00 39.39 4.63
108 109 5.785243 TGTGTGAATACATAGACAAACGGA 58.215 37.500 0.00 0.00 39.39 4.69
109 110 6.092122 ACATGTGTGAATACATAGACAAACGG 59.908 38.462 0.00 0.00 39.17 4.44
110 111 7.060600 ACATGTGTGAATACATAGACAAACG 57.939 36.000 0.00 0.00 39.17 3.60
112 113 9.883142 TGATACATGTGTGAATACATAGACAAA 57.117 29.630 9.11 0.00 39.17 2.83
114 115 9.480053 CATGATACATGTGTGAATACATAGACA 57.520 33.333 9.11 0.00 39.17 3.41
115 116 9.481340 ACATGATACATGTGTGAATACATAGAC 57.519 33.333 15.11 0.00 39.17 2.59
119 120 8.623903 GGAAACATGATACATGTGTGAATACAT 58.376 33.333 16.29 0.00 41.77 2.29
120 121 7.201600 CGGAAACATGATACATGTGTGAATACA 60.202 37.037 16.29 0.00 34.63 2.29
121 122 7.125755 CGGAAACATGATACATGTGTGAATAC 58.874 38.462 16.29 1.40 31.80 1.89
122 123 6.259829 CCGGAAACATGATACATGTGTGAATA 59.740 38.462 16.29 0.00 31.80 1.75
123 124 5.066375 CCGGAAACATGATACATGTGTGAAT 59.934 40.000 16.29 0.00 31.80 2.57
124 125 4.394610 CCGGAAACATGATACATGTGTGAA 59.605 41.667 16.29 0.00 31.80 3.18
125 126 3.938334 CCGGAAACATGATACATGTGTGA 59.062 43.478 16.29 0.00 31.80 3.58
126 127 3.689161 ACCGGAAACATGATACATGTGTG 59.311 43.478 9.46 4.81 31.80 3.82
127 128 3.950397 ACCGGAAACATGATACATGTGT 58.050 40.909 9.46 11.88 31.80 3.72
128 129 4.963276 AACCGGAAACATGATACATGTG 57.037 40.909 9.46 7.59 31.80 3.21
129 130 8.740123 TTATTAACCGGAAACATGATACATGT 57.260 30.769 9.46 10.94 0.00 3.21
137 138 9.233232 GCTAGAATTTTATTAACCGGAAACATG 57.767 33.333 9.46 0.00 0.00 3.21
138 139 8.962679 TGCTAGAATTTTATTAACCGGAAACAT 58.037 29.630 9.46 0.00 0.00 2.71
139 140 8.338072 TGCTAGAATTTTATTAACCGGAAACA 57.662 30.769 9.46 0.00 0.00 2.83
140 141 9.233232 CATGCTAGAATTTTATTAACCGGAAAC 57.767 33.333 9.46 0.00 0.00 2.78
141 142 9.179909 TCATGCTAGAATTTTATTAACCGGAAA 57.820 29.630 9.46 1.61 0.00 3.13
142 143 8.740123 TCATGCTAGAATTTTATTAACCGGAA 57.260 30.769 9.46 0.00 0.00 4.30
143 144 8.740123 TTCATGCTAGAATTTTATTAACCGGA 57.260 30.769 9.46 0.00 0.00 5.14
219 220 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
220 221 6.432472 GGAAATGAAGGAAATATGCCCTAGAG 59.568 42.308 0.00 0.00 31.36 2.43
221 222 6.103205 AGGAAATGAAGGAAATATGCCCTAGA 59.897 38.462 0.00 0.00 31.36 2.43
222 223 6.310149 AGGAAATGAAGGAAATATGCCCTAG 58.690 40.000 0.00 0.00 31.36 3.02
223 224 6.279813 AGGAAATGAAGGAAATATGCCCTA 57.720 37.500 0.00 0.00 31.36 3.53
224 225 5.148225 AGGAAATGAAGGAAATATGCCCT 57.852 39.130 0.00 0.00 0.00 5.19
225 226 5.507985 CGAAGGAAATGAAGGAAATATGCCC 60.508 44.000 0.00 0.00 0.00 5.36
226 227 5.523369 CGAAGGAAATGAAGGAAATATGCC 58.477 41.667 0.00 0.00 0.00 4.40
286 287 5.248248 TGATATCATTGCGAGGGAGGAATAA 59.752 40.000 0.00 0.00 30.94 1.40
288 289 3.584406 TGATATCATTGCGAGGGAGGAAT 59.416 43.478 0.00 0.00 32.28 3.01
375 376 0.913934 TTGGAGTCCCATGCAGCCTA 60.914 55.000 6.74 0.00 43.12 3.93
389 390 0.593128 CCTGCGGTGTTTCTTTGGAG 59.407 55.000 0.00 0.00 0.00 3.86
390 391 0.821711 CCCTGCGGTGTTTCTTTGGA 60.822 55.000 0.00 0.00 0.00 3.53
393 394 0.537371 CCTCCCTGCGGTGTTTCTTT 60.537 55.000 0.00 0.00 0.00 2.52
413 414 0.748367 GAAACCCTCCTTGATCCGGC 60.748 60.000 0.00 0.00 0.00 6.13
448 449 6.582636 AGAGATAGTTCATCAACCGCAATTA 58.417 36.000 0.00 0.00 35.96 1.40
454 456 6.865726 CCTAATGAGAGATAGTTCATCAACCG 59.134 42.308 0.00 0.00 35.96 4.44
458 460 7.202038 CCCAACCTAATGAGAGATAGTTCATCA 60.202 40.741 0.00 0.00 35.96 3.07
517 519 1.546923 CCATGCCAATGAGCTTGTTCA 59.453 47.619 0.00 0.00 36.46 3.18
529 531 1.379916 CAGACCTCCACCATGCCAA 59.620 57.895 0.00 0.00 0.00 4.52
534 536 3.591527 TGATTTAACCAGACCTCCACCAT 59.408 43.478 0.00 0.00 0.00 3.55
551 553 3.517901 TGACTTGGTATCCCTCGTGATTT 59.482 43.478 0.00 0.00 0.00 2.17
566 568 2.802816 CTCGAGTTCCACTTTGACTTGG 59.197 50.000 3.62 0.00 0.00 3.61
716 721 1.063417 CAGCTTTTCCCATCCCTGGAT 60.063 52.381 0.00 0.00 46.37 3.41
725 730 0.032615 ACCAACCACAGCTTTTCCCA 60.033 50.000 0.00 0.00 0.00 4.37
729 734 0.032615 TCCCACCAACCACAGCTTTT 60.033 50.000 0.00 0.00 0.00 2.27
740 745 1.377987 GCACCGCTATTCCCACCAA 60.378 57.895 0.00 0.00 0.00 3.67
763 768 0.320334 ATGTGCACATCACCGTTCGA 60.320 50.000 26.61 0.00 45.03 3.71
768 773 1.371337 CTCCCATGTGCACATCACCG 61.371 60.000 29.23 17.54 45.03 4.94
780 785 1.409251 CCTCCTCCTGCTCTCCCATG 61.409 65.000 0.00 0.00 0.00 3.66
786 791 2.042025 GGCTCCTCCTCCTGCTCT 60.042 66.667 0.00 0.00 0.00 4.09
840 845 1.546773 GCACCCAGTTTGTCCCATGTA 60.547 52.381 0.00 0.00 0.00 2.29
930 937 3.305608 GCTCATAAAAAGCACTTGCCAGT 60.306 43.478 0.00 0.00 43.38 4.00
975 982 4.081198 GGATCAGAGACCAATGAAGACACT 60.081 45.833 0.00 0.00 0.00 3.55
979 986 5.306419 CCATAGGATCAGAGACCAATGAAGA 59.694 44.000 0.00 0.00 0.00 2.87
984 991 3.649981 CCACCATAGGATCAGAGACCAAT 59.350 47.826 0.00 0.00 0.00 3.16
985 992 3.041211 CCACCATAGGATCAGAGACCAA 58.959 50.000 0.00 0.00 0.00 3.67
1127 1136 2.646175 CCCGACCTTCTCGAGCCAA 61.646 63.158 7.81 0.00 46.14 4.52
1165 1174 3.393970 CGCTGGCTTCCTCCCTGA 61.394 66.667 0.00 0.00 0.00 3.86
1199 1208 3.876589 GAAGGCACCGACTTCCGCA 62.877 63.158 0.00 0.00 41.48 5.69
1201 1210 2.809601 CGAAGGCACCGACTTCCG 60.810 66.667 4.03 0.00 44.20 4.30
1207 1216 3.744719 CCTCGTCGAAGGCACCGA 61.745 66.667 0.00 0.00 0.00 4.69
1215 1224 1.068417 CCCACACAACCTCGTCGAA 59.932 57.895 0.00 0.00 0.00 3.71
1222 1231 1.536676 CCAACTCCCCACACAACCT 59.463 57.895 0.00 0.00 0.00 3.50
1321 1331 4.033776 CTTGGCCTTGGCCCGAGA 62.034 66.667 26.03 6.28 36.16 4.04
1362 1372 0.605319 CAAGGCGGAGTTTGGCACTA 60.605 55.000 0.00 0.00 35.01 2.74
1365 1375 3.294493 GCAAGGCGGAGTTTGGCA 61.294 61.111 0.00 0.00 0.00 4.92
1419 1431 7.975750 AGAAAGCATTTAAGATACGAAAGGAC 58.024 34.615 0.00 0.00 39.27 3.85
1464 1476 4.142469 GCCACACCACTATCGCTTAAAATT 60.142 41.667 0.00 0.00 0.00 1.82
1504 1516 6.435277 GCATGAACCAGGGAAATGATATGTAT 59.565 38.462 0.00 0.00 0.00 2.29
1507 1519 4.320714 CGCATGAACCAGGGAAATGATATG 60.321 45.833 0.00 0.00 0.00 1.78
1590 1602 3.365265 GCTGTTGCCAAGGACCCG 61.365 66.667 0.00 0.00 0.00 5.28
1681 1693 1.895238 GCTTCCTAGCCGTGGTACA 59.105 57.895 0.00 0.00 41.74 2.90
1684 1696 2.678934 TCGCTTCCTAGCCGTGGT 60.679 61.111 0.00 0.00 44.86 4.16
1687 1699 2.711922 CCACTCGCTTCCTAGCCGT 61.712 63.158 0.00 0.00 44.86 5.68
1738 1750 9.787435 AATACTTTATTAGATAATGCGGTTCCA 57.213 29.630 0.00 0.00 0.00 3.53
1787 1799 1.822990 GTACGACACCCAGAGATTCCA 59.177 52.381 0.00 0.00 0.00 3.53
1791 1803 0.963856 TGCGTACGACACCCAGAGAT 60.964 55.000 21.65 0.00 0.00 2.75
1792 1804 1.583495 CTGCGTACGACACCCAGAGA 61.583 60.000 21.65 0.00 35.41 3.10
1796 1808 3.299977 AGCTGCGTACGACACCCA 61.300 61.111 21.65 5.86 0.00 4.51
1800 1812 2.021584 CTTGCAGCTGCGTACGACA 61.022 57.895 32.11 15.28 45.83 4.35
1820 1832 2.340210 TGCGCTCTTTGGCCATATAA 57.660 45.000 6.09 0.00 0.00 0.98
1849 1861 9.338291 CGAATTTAATCATCTATTGCAAGGATG 57.662 33.333 26.18 26.18 38.41 3.51
1851 1863 8.559536 GTCGAATTTAATCATCTATTGCAAGGA 58.440 33.333 4.94 6.32 0.00 3.36
1950 1962 4.904853 ACCCAACAATAAACCACCAGAAAT 59.095 37.500 0.00 0.00 0.00 2.17
2001 2028 2.482839 CCGCAATGAAAAACACACCCTT 60.483 45.455 0.00 0.00 0.00 3.95
2026 2053 1.403647 CGGAGACACGGTGCTTAATCA 60.404 52.381 8.30 0.00 0.00 2.57
2049 2076 0.471022 AACACCACCACCCAAATCCC 60.471 55.000 0.00 0.00 0.00 3.85
2069 2096 1.129326 GATCTGCCGATCCGTAAACG 58.871 55.000 6.85 0.00 40.14 3.60
2156 2184 1.079490 TCTCCTCCCACAATCAGAGGT 59.921 52.381 5.27 0.00 46.15 3.85
2174 2202 2.932614 CGAGCGGATCAAGTTGAAATCT 59.067 45.455 10.14 4.96 0.00 2.40
2263 2291 4.659172 CCTCGCACAAAGCCCCCA 62.659 66.667 0.00 0.00 41.38 4.96
2287 2315 3.452627 CCAGGTGTATCTAGCTCCTTTGT 59.547 47.826 0.00 0.00 0.00 2.83
2290 2318 3.052490 AGTCCAGGTGTATCTAGCTCCTT 60.052 47.826 0.00 0.00 0.00 3.36
2325 2363 1.866015 AGGATGCTGTGTACTGGCTA 58.134 50.000 0.00 0.00 0.00 3.93
2326 2364 0.987294 AAGGATGCTGTGTACTGGCT 59.013 50.000 0.00 0.00 0.00 4.75
2450 2488 1.067821 CTCTGCACGTAATCCTCTCCC 59.932 57.143 0.00 0.00 0.00 4.30
2494 2532 1.694150 CCTCTGTCTTGAACCAGACCA 59.306 52.381 4.11 0.00 42.39 4.02
2497 2535 0.687354 GCCCTCTGTCTTGAACCAGA 59.313 55.000 0.00 0.00 36.35 3.86
2508 2546 1.201429 ATGGGTTCGAAGCCCTCTGT 61.201 55.000 36.30 18.31 45.85 3.41
2555 2593 3.561120 TTGGAACCCAAGCCGCGAT 62.561 57.895 8.23 0.00 38.75 4.58
2560 2598 2.989253 CCCGTTGGAACCCAAGCC 60.989 66.667 0.00 0.00 44.82 4.35
2599 2637 4.569180 AAGTGTGCAGTGCCGCCT 62.569 61.111 13.72 1.96 0.00 5.52
2689 2735 7.275920 AGAATCGTCTTGTAAATCAATAGCCT 58.724 34.615 0.00 0.00 35.35 4.58
2707 2753 1.069823 CTGCCAGATGCCTAGAATCGT 59.930 52.381 0.00 0.00 40.16 3.73
2719 2765 2.042162 ACCCATTCACTTTCTGCCAGAT 59.958 45.455 0.00 0.00 0.00 2.90
2740 2786 1.921982 TTCAAGGGCATAGCAAAGCA 58.078 45.000 0.00 0.00 0.00 3.91
2764 2810 4.262463 CGGCTCTTAATATGGCAAGGACTA 60.262 45.833 0.00 0.00 0.00 2.59
2790 2836 4.019321 GCCCCTATGATGCCAGTATTCTTA 60.019 45.833 0.00 0.00 0.00 2.10
2806 2852 4.846367 TCATCTAGTTAATGCTGCCCCTAT 59.154 41.667 0.00 0.00 0.00 2.57
2819 2865 4.820716 GCGTCTCCCTTAGTCATCTAGTTA 59.179 45.833 0.00 0.00 0.00 2.24
2822 2868 2.224549 CGCGTCTCCCTTAGTCATCTAG 59.775 54.545 0.00 0.00 0.00 2.43
2824 2870 1.025812 CGCGTCTCCCTTAGTCATCT 58.974 55.000 0.00 0.00 0.00 2.90
2965 3014 7.165154 CAGTCGTACACAACAAACCAATAAAAG 59.835 37.037 0.00 0.00 0.00 2.27
2982 3031 5.472478 ACATGACTTTCTACTCAGTCGTACA 59.528 40.000 0.00 0.00 42.16 2.90
2990 3039 4.040339 TGAAGGCACATGACTTTCTACTCA 59.960 41.667 0.50 0.00 44.93 3.41
3016 3065 1.399714 GGTCGGATCCCAAAAATCCC 58.600 55.000 6.06 0.00 39.71 3.85
3047 3096 0.327924 ACCAATCATGTTCCGCCTGA 59.672 50.000 0.00 0.00 0.00 3.86
3057 3106 0.819582 GACAGGGCCAACCAATCATG 59.180 55.000 6.18 0.00 43.89 3.07
3075 3125 6.918067 TGTCAATCTCTTCAGGTAGAAAGA 57.082 37.500 0.00 0.00 35.40 2.52
3195 3254 3.521947 ACCCGTTCACTAAGTCATAGC 57.478 47.619 0.00 0.00 34.78 2.97
3228 3287 0.109272 GAGTCGCGACAGGTTCATCA 60.109 55.000 37.85 0.00 0.00 3.07
3230 3289 1.215647 GGAGTCGCGACAGGTTCAT 59.784 57.895 37.85 18.06 0.00 2.57
3233 3292 0.892755 TAATGGAGTCGCGACAGGTT 59.107 50.000 37.85 26.64 0.00 3.50
3275 3334 0.174845 TATCCACGCCTTTCACCTCG 59.825 55.000 0.00 0.00 0.00 4.63
3276 3335 2.007608 GTTATCCACGCCTTTCACCTC 58.992 52.381 0.00 0.00 0.00 3.85
3289 3348 5.513094 GGCCTGCATAGTCTAATGTTATCCA 60.513 44.000 0.00 0.00 0.00 3.41
3307 3366 0.106015 AATAAGGGTGATGGGCCTGC 60.106 55.000 4.53 0.00 0.00 4.85
3330 3390 7.384115 CACCTTTGTGTAGATCTTAAACGAGAA 59.616 37.037 0.00 0.00 37.72 2.87
3367 3427 2.033602 GGGCCACCAACGCTAAGT 59.966 61.111 4.39 0.00 36.50 2.24
3416 3476 3.003068 CGAGAATATTGCAGCCTTTGAGG 59.997 47.826 0.00 0.00 38.80 3.86
3470 3530 2.427506 CCCTTAGTGTGTTTGAGCTCC 58.572 52.381 12.15 0.00 0.00 4.70
3545 3606 2.143925 GAAGACCTCCCGAACAAACTG 58.856 52.381 0.00 0.00 0.00 3.16
3593 3654 3.181457 ACGAGGTGCATGATCTGATGAAT 60.181 43.478 0.00 0.00 0.00 2.57
3642 3703 3.105959 ACTTCCCCATTTCTCCATTGG 57.894 47.619 0.00 0.00 0.00 3.16
3667 3728 1.484240 CAAAGGCCCCTTTTGTTGTGA 59.516 47.619 9.52 0.00 42.93 3.58
3768 3829 4.940046 GCACCAATCCTTCGATATGATCAT 59.060 41.667 13.81 13.81 0.00 2.45
3771 3832 3.679389 GGCACCAATCCTTCGATATGAT 58.321 45.455 0.00 0.00 0.00 2.45
3820 3886 2.722629 CGTGTTGTCGACGTATTGAAGT 59.277 45.455 11.62 0.00 32.06 3.01
3823 3889 2.684754 TCGTGTTGTCGACGTATTGA 57.315 45.000 11.62 3.30 38.04 2.57
3831 3897 0.317160 AAGGAGCATCGTGTTGTCGA 59.683 50.000 0.00 0.00 43.86 4.20
3836 3902 2.069273 CTCGAAAAGGAGCATCGTGTT 58.931 47.619 0.00 0.00 37.79 3.32
3990 4056 7.339466 CCCCAAGCTTACAATTAAGTAGATTGT 59.661 37.037 0.00 7.51 46.34 2.71
4047 4114 2.750948 TCGAAAGTTTCCGGTGAGAAG 58.249 47.619 10.01 0.00 0.00 2.85
4289 4360 2.167693 TCGCCCACCTAACTAAGTGATG 59.832 50.000 0.00 0.00 36.01 3.07
4423 4494 0.177141 CCCTAAGAATGTCCGCCGAA 59.823 55.000 0.00 0.00 0.00 4.30
4425 4496 0.177141 TTCCCTAAGAATGTCCGCCG 59.823 55.000 0.00 0.00 0.00 6.46
4475 4547 2.158813 ACATCGAGACCTTGTGTTTGGT 60.159 45.455 0.00 0.00 39.60 3.67
4488 4560 2.466846 TCCCATTCCAGAACATCGAGA 58.533 47.619 0.00 0.00 0.00 4.04
4618 4690 0.526524 CGAAGAGCGCAGGGTAAGAG 60.527 60.000 11.47 0.00 0.00 2.85
4653 4726 0.331278 CTCCCCCACCAGCACATTAA 59.669 55.000 0.00 0.00 0.00 1.40
4710 4783 1.480212 TTGATCACAGACAGGGGCGT 61.480 55.000 0.00 0.00 0.00 5.68
4711 4784 0.321564 TTTGATCACAGACAGGGGCG 60.322 55.000 0.00 0.00 0.00 6.13
4723 4808 4.722526 TTCCAACTCCCTTCTTTGATCA 57.277 40.909 0.00 0.00 0.00 2.92
4728 4813 4.731313 ACTCATTCCAACTCCCTTCTTT 57.269 40.909 0.00 0.00 0.00 2.52
4774 4859 0.251165 GTCAACCCCCAAGCTAAGCA 60.251 55.000 0.00 0.00 0.00 3.91
4894 4981 1.919600 GAGTGGGATGCTGGCCTTCT 61.920 60.000 3.32 0.00 0.00 2.85
4902 4989 5.643421 ATCTTTATCTTGAGTGGGATGCT 57.357 39.130 0.00 0.00 0.00 3.79
4904 4991 8.517062 AGAAAATCTTTATCTTGAGTGGGATG 57.483 34.615 0.00 0.00 0.00 3.51
4956 5043 2.431771 CACATTGTCCGCCGTCGA 60.432 61.111 0.00 0.00 38.10 4.20
5010 5097 0.690192 TCCACGTGATTCCCACACAT 59.310 50.000 19.30 0.00 45.98 3.21
5026 5113 3.545124 AAGGCATGGTTCGCGTCCA 62.545 57.895 22.54 22.54 39.41 4.02
5041 5128 5.472148 TGCTAATGCACATTCAAAGAAAGG 58.528 37.500 0.00 0.00 45.31 3.11
5118 5207 2.758979 CTGAAGCAAATCCAAGCCTGAT 59.241 45.455 0.00 0.00 0.00 2.90
5160 5250 2.482316 CCATACAATCCGACCGCTTGTA 60.482 50.000 13.87 13.87 39.08 2.41
5163 5253 0.814010 GCCATACAATCCGACCGCTT 60.814 55.000 0.00 0.00 0.00 4.68
5203 5294 3.485463 TCTAATGGTCCATAAAGCCCG 57.515 47.619 4.33 0.00 0.00 6.13
5246 5337 1.361197 TCAGTGGGGTGAGTGGAGATA 59.639 52.381 0.00 0.00 0.00 1.98
5247 5338 0.117140 TCAGTGGGGTGAGTGGAGAT 59.883 55.000 0.00 0.00 0.00 2.75
5289 5381 5.221601 CCAGCAGTGTCCACATCTATAAGAT 60.222 44.000 0.00 0.00 34.74 2.40
5323 5415 1.095600 CTGCATCTGCTCAGCATTGT 58.904 50.000 0.00 0.00 42.66 2.71
5325 5417 0.255033 TCCTGCATCTGCTCAGCATT 59.745 50.000 0.00 0.00 42.66 3.56
5354 5446 4.183865 TCGTTAAGGTGCATCTGATCTTG 58.816 43.478 0.00 0.00 0.00 3.02
5364 5456 2.449525 GCGCGATCGTTAAGGTGCA 61.450 57.895 17.81 0.00 38.14 4.57
5372 5464 3.475774 GGTTGACGCGCGATCGTT 61.476 61.111 39.36 14.54 43.42 3.85
5420 5513 5.132480 CCAGACCCTACTTCCTACTACTACT 59.868 48.000 0.00 0.00 0.00 2.57
5480 5576 2.355513 CCACAAAGTATGAGAGGCAGCT 60.356 50.000 0.00 0.00 0.00 4.24
5534 5633 2.101249 CACCAAGGCAAACATCACAAGT 59.899 45.455 0.00 0.00 0.00 3.16
5613 5712 6.564709 TGAATCTGTCCAGACTTGAAAATG 57.435 37.500 0.00 0.00 40.75 2.32
5621 5721 3.072184 AGTTGCTTGAATCTGTCCAGACT 59.928 43.478 0.00 0.00 40.75 3.24
5694 5794 4.373156 ACTCTATGCCCCATGTAAATCC 57.627 45.455 0.00 0.00 0.00 3.01
5722 5822 7.774157 ACGAATCACTATCCAACTCTAAGTCTA 59.226 37.037 0.00 0.00 0.00 2.59
5730 5830 6.978659 TGTATTCACGAATCACTATCCAACTC 59.021 38.462 0.00 0.00 32.50 3.01
5742 5843 5.805486 TGTAGTTGCTCTGTATTCACGAATC 59.195 40.000 0.00 0.00 32.50 2.52
5752 5853 1.274167 CCCCGTTGTAGTTGCTCTGTA 59.726 52.381 0.00 0.00 0.00 2.74
5759 5860 4.515944 TGAAAATGTACCCCGTTGTAGTTG 59.484 41.667 0.00 0.00 0.00 3.16
5764 5865 2.933573 TGTGAAAATGTACCCCGTTGT 58.066 42.857 0.00 0.00 0.00 3.32
5769 5870 4.339247 CCTGATCATGTGAAAATGTACCCC 59.661 45.833 0.00 0.00 0.00 4.95
5819 5920 4.694751 GCTTTGTAGGAGTCCCCCTATCTA 60.695 50.000 5.25 0.00 40.60 1.98
5823 5924 1.079825 TGCTTTGTAGGAGTCCCCCTA 59.920 52.381 5.25 0.00 37.74 3.53
5830 5932 1.202806 TGCTTGCTGCTTTGTAGGAGT 60.203 47.619 0.00 0.00 41.52 3.85
5930 6032 9.979270 CGATTTTGATGGCTAATATATTGACTC 57.021 33.333 8.28 0.00 0.00 3.36
5956 6058 0.895559 CTTGTTTCCTCCAGCACCCC 60.896 60.000 0.00 0.00 0.00 4.95
6008 6110 2.601067 TGCAACATGGGTGGCCTG 60.601 61.111 3.32 0.00 43.75 4.85
6022 6124 2.350895 CAATCACGGGGAGGTGCA 59.649 61.111 0.00 0.00 37.83 4.57
6050 6152 1.812922 GCCACTCACTGATGCCTCG 60.813 63.158 0.00 0.00 0.00 4.63
6078 6180 1.758440 TTGTCCAAGAGCTCTGCCGT 61.758 55.000 19.06 0.00 0.00 5.68
6221 6324 9.639601 GCATAGTATATATATGTGTGTGTGTGT 57.360 33.333 5.44 0.00 33.90 3.72
6222 6325 9.638239 TGCATAGTATATATATGTGTGTGTGTG 57.362 33.333 5.44 0.00 33.90 3.82
6225 6328 9.317936 GCATGCATAGTATATATATGTGTGTGT 57.682 33.333 14.21 0.00 33.90 3.72
6226 6329 9.316730 TGCATGCATAGTATATATATGTGTGTG 57.683 33.333 18.46 0.56 33.90 3.82
6227 6330 9.889128 TTGCATGCATAGTATATATATGTGTGT 57.111 29.630 23.37 0.00 33.90 3.72
6229 6332 9.889128 TGTTGCATGCATAGTATATATATGTGT 57.111 29.630 23.37 0.00 33.90 3.72
6302 6410 8.370940 ACATGTGCAGTACTATAAGATGCTAAT 58.629 33.333 0.00 0.00 37.76 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.