Multiple sequence alignment - TraesCS3A01G241200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G241200 chr3A 100.000 2933 0 0 1 2933 453438311 453435379 0.000000e+00 5417
1 TraesCS3A01G241200 chr3A 91.819 2958 203 10 1 2933 453429641 453426698 0.000000e+00 4085
2 TraesCS3A01G241200 chr3A 86.568 1623 185 23 1 1602 448089623 448088013 0.000000e+00 1759
3 TraesCS3A01G241200 chr3A 86.662 1537 171 24 1 1515 448117163 448115639 0.000000e+00 1672
4 TraesCS3A01G241200 chr3A 84.991 1599 185 47 1 1565 397269810 397271387 0.000000e+00 1572
5 TraesCS3A01G241200 chr3A 86.696 1368 157 24 1 1356 151216880 151218234 0.000000e+00 1495
6 TraesCS3A01G241200 chr3A 86.989 1322 149 22 1 1310 141878111 141876801 0.000000e+00 1467
7 TraesCS3A01G241200 chr3A 91.688 397 27 6 2541 2933 307287248 307286854 1.990000e-151 545
8 TraesCS3A01G241200 chr3A 91.436 397 28 6 2541 2933 307334168 307333774 9.250000e-150 540
9 TraesCS3A01G241200 chr3A 91.436 397 28 6 2541 2933 307381263 307380869 9.250000e-150 540
10 TraesCS3A01G241200 chr3A 89.398 415 42 2 1591 2003 324035254 324034840 3.350000e-144 521
11 TraesCS3A01G241200 chr3A 91.003 389 29 6 2541 2925 307279667 307279281 1.200000e-143 520
12 TraesCS3A01G241200 chr7A 86.172 1591 175 29 3 1568 646964123 646962553 0.000000e+00 1677
13 TraesCS3A01G241200 chr7A 87.075 1323 140 27 1 1308 534661303 534659997 0.000000e+00 1467
14 TraesCS3A01G241200 chr7A 82.992 1658 196 55 1 1602 448598810 448597183 0.000000e+00 1421
15 TraesCS3A01G241200 chr7A 82.495 1411 164 49 250 1602 448615902 448614517 0.000000e+00 1160
16 TraesCS3A01G241200 chr7A 74.490 294 57 15 1072 1356 311958817 311959101 8.590000e-21 111
17 TraesCS3A01G241200 chr4A 83.762 1595 210 41 1 1569 342092001 342093572 0.000000e+00 1465
18 TraesCS3A01G241200 chr4A 93.974 531 29 2 2404 2933 428502684 428502156 0.000000e+00 800
19 TraesCS3A01G241200 chr4A 93.797 532 30 3 2404 2933 428532730 428532200 0.000000e+00 797
20 TraesCS3A01G241200 chr4A 92.340 235 16 1 2371 2605 426248257 426248025 1.680000e-87 333
21 TraesCS3A01G241200 chr4A 93.069 101 7 0 2367 2467 352781278 352781378 6.550000e-32 148
22 TraesCS3A01G241200 chr4A 90.196 102 10 0 2367 2468 352797687 352797788 1.830000e-27 134
23 TraesCS3A01G241200 chr4A 95.122 82 4 0 2386 2467 410107643 410107562 2.370000e-26 130
24 TraesCS3A01G241200 chr1D 86.726 1341 143 33 1 1320 223195916 223197242 0.000000e+00 1458
25 TraesCS3A01G241200 chr1A 86.533 1344 154 24 1 1329 424704131 424705462 0.000000e+00 1454
26 TraesCS3A01G241200 chr1A 86.045 1383 144 40 1 1356 180002932 180001572 0.000000e+00 1439
27 TraesCS3A01G241200 chr1A 81.147 1395 197 49 211 1565 379462374 379463742 0.000000e+00 1059
28 TraesCS3A01G241200 chr1A 90.955 398 29 7 2541 2933 279688067 279687672 2.000000e-146 529
29 TraesCS3A01G241200 chr6A 86.006 1372 161 29 1 1356 462753597 462752241 0.000000e+00 1441
30 TraesCS3A01G241200 chr6A 76.259 556 88 32 2399 2931 233514730 233515264 3.750000e-64 255
31 TraesCS3A01G241200 chr6A 78.780 377 61 16 2367 2736 206270112 206270476 4.890000e-58 235
32 TraesCS3A01G241200 chr2A 82.125 1628 208 49 1 1565 493567997 493569604 0.000000e+00 1317
33 TraesCS3A01G241200 chr5B 85.835 473 52 10 2464 2933 84471095 84470635 3.400000e-134 488
34 TraesCS3A01G241200 chr4D 92.638 326 21 1 1585 1910 95163640 95163962 1.590000e-127 466
35 TraesCS3A01G241200 chr4D 90.432 324 28 1 1591 1914 239504446 239504126 9.720000e-115 424
36 TraesCS3A01G241200 chr4D 89.728 331 29 3 1585 1914 369625131 369625457 4.520000e-113 418
37 TraesCS3A01G241200 chr5D 90.606 330 28 1 1585 1914 273833740 273834066 4.490000e-118 435
38 TraesCS3A01G241200 chr2D 90.606 330 28 1 1585 1914 424197162 424197488 4.490000e-118 435
39 TraesCS3A01G241200 chr2D 90.000 330 30 1 1591 1920 623930972 623930646 9.720000e-115 424
40 TraesCS3A01G241200 chr3D 90.030 331 29 2 1591 1920 207873459 207873132 2.700000e-115 425
41 TraesCS3A01G241200 chr3B 83.210 405 35 22 1614 2018 672891932 672891561 1.010000e-89 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G241200 chr3A 453435379 453438311 2932 True 5417 5417 100.000 1 2933 1 chr3A.!!$R10 2932
1 TraesCS3A01G241200 chr3A 453426698 453429641 2943 True 4085 4085 91.819 1 2933 1 chr3A.!!$R9 2932
2 TraesCS3A01G241200 chr3A 448088013 448089623 1610 True 1759 1759 86.568 1 1602 1 chr3A.!!$R7 1601
3 TraesCS3A01G241200 chr3A 448115639 448117163 1524 True 1672 1672 86.662 1 1515 1 chr3A.!!$R8 1514
4 TraesCS3A01G241200 chr3A 397269810 397271387 1577 False 1572 1572 84.991 1 1565 1 chr3A.!!$F2 1564
5 TraesCS3A01G241200 chr3A 151216880 151218234 1354 False 1495 1495 86.696 1 1356 1 chr3A.!!$F1 1355
6 TraesCS3A01G241200 chr3A 141876801 141878111 1310 True 1467 1467 86.989 1 1310 1 chr3A.!!$R1 1309
7 TraesCS3A01G241200 chr7A 646962553 646964123 1570 True 1677 1677 86.172 3 1568 1 chr7A.!!$R4 1565
8 TraesCS3A01G241200 chr7A 534659997 534661303 1306 True 1467 1467 87.075 1 1308 1 chr7A.!!$R3 1307
9 TraesCS3A01G241200 chr7A 448597183 448598810 1627 True 1421 1421 82.992 1 1602 1 chr7A.!!$R1 1601
10 TraesCS3A01G241200 chr7A 448614517 448615902 1385 True 1160 1160 82.495 250 1602 1 chr7A.!!$R2 1352
11 TraesCS3A01G241200 chr4A 342092001 342093572 1571 False 1465 1465 83.762 1 1569 1 chr4A.!!$F1 1568
12 TraesCS3A01G241200 chr4A 428502156 428502684 528 True 800 800 93.974 2404 2933 1 chr4A.!!$R3 529
13 TraesCS3A01G241200 chr4A 428532200 428532730 530 True 797 797 93.797 2404 2933 1 chr4A.!!$R4 529
14 TraesCS3A01G241200 chr1D 223195916 223197242 1326 False 1458 1458 86.726 1 1320 1 chr1D.!!$F1 1319
15 TraesCS3A01G241200 chr1A 424704131 424705462 1331 False 1454 1454 86.533 1 1329 1 chr1A.!!$F2 1328
16 TraesCS3A01G241200 chr1A 180001572 180002932 1360 True 1439 1439 86.045 1 1356 1 chr1A.!!$R1 1355
17 TraesCS3A01G241200 chr1A 379462374 379463742 1368 False 1059 1059 81.147 211 1565 1 chr1A.!!$F1 1354
18 TraesCS3A01G241200 chr6A 462752241 462753597 1356 True 1441 1441 86.006 1 1356 1 chr6A.!!$R1 1355
19 TraesCS3A01G241200 chr6A 233514730 233515264 534 False 255 255 76.259 2399 2931 1 chr6A.!!$F2 532
20 TraesCS3A01G241200 chr2A 493567997 493569604 1607 False 1317 1317 82.125 1 1565 1 chr2A.!!$F1 1564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 129 1.797025 AACTAAGGCGACAAGAGTGC 58.203 50.0 0.0 0.0 0.0 4.40 F
1157 1261 0.833287 CTAGAGATGGTGGGGTGGTG 59.167 60.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1766 0.102481 ACGTCTACATGATGACCCGC 59.898 55.0 0.0 0.0 35.71 6.13 R
2302 2440 0.914417 CCCCTACTCTTTCCCCAGCA 60.914 60.0 0.0 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.370718 GGAGGAGTTTTATTCAAAGCGAACTA 59.629 38.462 0.00 0.00 36.12 2.24
61 66 3.144871 GCCATAACCCCAACCGCC 61.145 66.667 0.00 0.00 0.00 6.13
114 120 2.159198 GGTATGACGGAAACTAAGGCGA 60.159 50.000 0.00 0.00 0.00 5.54
123 129 1.797025 AACTAAGGCGACAAGAGTGC 58.203 50.000 0.00 0.00 0.00 4.40
126 132 2.289694 ACTAAGGCGACAAGAGTGCAAT 60.290 45.455 0.00 0.00 0.00 3.56
144 150 4.126437 GCAATAAAACACCAGGCAAAAGT 58.874 39.130 0.00 0.00 0.00 2.66
158 164 2.162681 CAAAAGTCCGAGCCTTCCATT 58.837 47.619 0.00 0.00 0.00 3.16
563 590 2.806244 GCTAACGAGAGAAGCAAACCAA 59.194 45.455 0.00 0.00 41.18 3.67
608 636 4.870363 ACACACAAGAATAAACATGGCAC 58.130 39.130 0.00 0.00 0.00 5.01
651 689 5.649557 TGCATGTCCAGTTTAAATATGCAC 58.350 37.500 0.00 5.37 42.88 4.57
653 691 5.448496 GCATGTCCAGTTTAAATATGCACGA 60.448 40.000 0.00 0.00 39.25 4.35
950 1008 4.341366 TGTTATCATGATGCGGATGACT 57.659 40.909 18.72 0.00 32.68 3.41
960 1018 2.009051 TGCGGATGACTTATGCAAGTG 58.991 47.619 0.00 0.00 45.18 3.16
961 1019 2.279741 GCGGATGACTTATGCAAGTGA 58.720 47.619 0.00 0.00 45.18 3.41
1011 1072 6.096423 ACATGAGCATAGACATGAAGCATTTT 59.904 34.615 12.90 0.00 44.28 1.82
1110 1198 2.537560 CGATTGAGATGCCGGTGCC 61.538 63.158 1.90 0.00 36.33 5.01
1155 1259 0.982852 TGCTAGAGATGGTGGGGTGG 60.983 60.000 0.00 0.00 0.00 4.61
1157 1261 0.833287 CTAGAGATGGTGGGGTGGTG 59.167 60.000 0.00 0.00 0.00 4.17
1184 1290 2.863346 CGGGTGTCCCACGAGTTGA 61.863 63.158 5.64 0.00 45.83 3.18
1382 1519 3.767131 TGGAGGTAGTCATTCATGTTCGA 59.233 43.478 0.00 0.00 0.00 3.71
1394 1531 2.688446 TCATGTTCGAGAAGCGGTAGAT 59.312 45.455 0.00 0.00 41.33 1.98
1398 1535 3.630769 TGTTCGAGAAGCGGTAGATGTAT 59.369 43.478 0.00 0.00 41.33 2.29
1496 1633 4.992951 GGTACACGTTTTCATAGGTGTTCT 59.007 41.667 7.31 0.00 42.58 3.01
1645 1783 0.464036 TGGCGGGTCATCATGTAGAC 59.536 55.000 10.50 10.50 0.00 2.59
1687 1825 2.791383 TGGTGCGTCCAAAATCTTTG 57.209 45.000 0.00 0.00 44.12 2.77
1708 1846 0.744771 GGATCGTCCTTGGACTTGGC 60.745 60.000 16.60 4.74 32.53 4.52
1743 1881 3.374745 GTTCAACAGTGATGTGCAAAGG 58.625 45.455 0.00 0.00 32.48 3.11
1753 1891 0.537143 TGTGCAAAGGCCAGAACGAT 60.537 50.000 5.01 0.00 40.13 3.73
1765 1903 4.344865 AACGATTGGCGGCTGGGT 62.345 61.111 11.43 0.00 46.49 4.51
1823 1961 3.842923 TGCTAGCGGAGGCAGAGC 61.843 66.667 10.77 6.17 45.52 4.09
1871 2009 3.041940 CAAGTGGTGGACGGACGC 61.042 66.667 0.00 0.00 0.00 5.19
1888 2026 2.670934 CAGGCAGCGACAAGGCTT 60.671 61.111 0.00 0.00 42.53 4.35
1889 2027 2.113986 AGGCAGCGACAAGGCTTT 59.886 55.556 0.00 0.00 42.53 3.51
1891 2029 2.260869 GGCAGCGACAAGGCTTTGA 61.261 57.895 16.36 0.00 42.53 2.69
1914 2052 1.688884 GAGGGAGAAGGAGCTGGCT 60.689 63.158 0.00 0.00 0.00 4.75
1916 2054 2.498726 GGAGAAGGAGCTGGCTCG 59.501 66.667 15.15 0.00 43.59 5.03
1937 2075 1.124780 GGGAAGGAGAAGTAGAGGGC 58.875 60.000 0.00 0.00 0.00 5.19
1946 2084 3.633065 GAGAAGTAGAGGGCGTAGTCAAT 59.367 47.826 0.00 0.00 0.00 2.57
1956 2094 0.384309 CGTAGTCAATGCGGCTAGGA 59.616 55.000 0.00 0.00 32.81 2.94
1963 2101 2.635229 AATGCGGCTAGGACGAGCAG 62.635 60.000 0.00 3.70 44.76 4.24
1968 2106 2.473760 GCTAGGACGAGCAGCGAGA 61.474 63.158 5.99 0.00 44.57 4.04
1988 2126 2.770164 TAGGAGAAGCAGAACTTGGC 57.230 50.000 0.00 0.00 39.29 4.52
2047 2185 2.124778 GAGGCTTGAGCTCCTGGC 60.125 66.667 12.15 15.60 41.70 4.85
2072 2210 2.948720 GCGAGGAGCTTGAGGGTGT 61.949 63.158 0.00 0.00 44.04 4.16
2075 2213 2.360475 GGAGCTTGAGGGTGTGGC 60.360 66.667 0.00 0.00 0.00 5.01
2118 2256 2.829003 CGTGCTAGAGAGGCGGGA 60.829 66.667 0.00 0.00 0.00 5.14
2141 2279 2.203983 TGGAAGAGGAGCCTGGCA 60.204 61.111 22.65 0.00 0.00 4.92
2142 2280 2.270527 GGAAGAGGAGCCTGGCAC 59.729 66.667 22.65 15.18 0.00 5.01
2166 2304 2.358737 CGTGTGAGGTGGCCTTCC 60.359 66.667 3.32 6.89 31.76 3.46
2227 2365 2.750657 GGCATGGGAGGTGAGGAGG 61.751 68.421 0.00 0.00 0.00 4.30
2284 2422 0.469144 AGGAGGAGAGCGAAGGGATC 60.469 60.000 0.00 0.00 0.00 3.36
2302 2440 2.684735 GAGAGGAGGGGGTCGAGT 59.315 66.667 0.00 0.00 0.00 4.18
2306 2444 3.775654 GGAGGGGGTCGAGTGCTG 61.776 72.222 0.00 0.00 0.00 4.41
2363 2501 0.683973 CTAGCGGCATGAGAGGGAAT 59.316 55.000 1.45 0.00 0.00 3.01
2364 2502 0.394192 TAGCGGCATGAGAGGGAATG 59.606 55.000 1.45 0.00 0.00 2.67
2365 2503 1.895707 GCGGCATGAGAGGGAATGG 60.896 63.158 0.00 0.00 0.00 3.16
2383 2521 2.436115 GGGAAAGGGAGCGAACGG 60.436 66.667 0.00 0.00 0.00 4.44
2563 2726 3.988186 AGAAAAGAAAGGGAGGTTAGGGT 59.012 43.478 0.00 0.00 0.00 4.34
2578 2741 4.202388 GGTTAGGGTAAGAAGTTGGACACA 60.202 45.833 0.00 0.00 0.00 3.72
2605 2768 7.320399 GGATAATTTTTCCGGACTCACAAAAT 58.680 34.615 15.06 15.06 0.00 1.82
2742 2905 6.438186 AAATGTTGAGATTTTTGATGGGGT 57.562 33.333 0.00 0.00 0.00 4.95
2802 2966 7.939039 AGAGACCAAGAATTGTGATAACAAAGA 59.061 33.333 0.00 0.00 46.99 2.52
2808 2972 8.430063 CAAGAATTGTGATAACAAAGACATTGC 58.570 33.333 0.00 0.00 41.21 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 66 5.154222 GTTCCTTGATTTTGCGTTCCTTAG 58.846 41.667 0.00 0.00 0.00 2.18
114 120 4.037923 CCTGGTGTTTTATTGCACTCTTGT 59.962 41.667 0.00 0.00 36.03 3.16
123 129 4.749598 GGACTTTTGCCTGGTGTTTTATTG 59.250 41.667 0.00 0.00 0.00 1.90
126 132 2.359531 CGGACTTTTGCCTGGTGTTTTA 59.640 45.455 0.00 0.00 0.00 1.52
144 150 3.456644 TGGTAAATAATGGAAGGCTCGGA 59.543 43.478 0.00 0.00 0.00 4.55
323 339 3.136443 CCATATCAAGCCTCTAACCCACA 59.864 47.826 0.00 0.00 0.00 4.17
563 590 3.825143 ACCATGTTGCTTGCTTCTTTT 57.175 38.095 0.00 0.00 0.00 2.27
608 636 1.452110 TCATCCTTGGTTGTGCATCG 58.548 50.000 0.00 0.00 0.00 3.84
651 689 0.030504 TTGTGCACTTTGCCATGTCG 59.969 50.000 19.41 0.00 44.23 4.35
653 691 1.206610 TGTTTGTGCACTTTGCCATGT 59.793 42.857 19.41 0.00 44.23 3.21
979 1037 7.719778 TCATGTCTATGCTCATGTTAACATC 57.280 36.000 18.25 8.32 41.22 3.06
985 1045 4.520179 TGCTTCATGTCTATGCTCATGTT 58.480 39.130 0.00 0.00 41.22 2.71
1011 1072 1.872388 TTCGTTTCTGCCACGATGAA 58.128 45.000 0.00 0.00 45.67 2.57
1110 1198 3.316029 TCTGCACATCCACACTTTCTTTG 59.684 43.478 0.00 0.00 0.00 2.77
1184 1290 1.674322 CCCTCGTTTTCCATGCCGT 60.674 57.895 0.00 0.00 0.00 5.68
1382 1519 2.628657 GACCCATACATCTACCGCTTCT 59.371 50.000 0.00 0.00 0.00 2.85
1394 1531 0.390603 CGTTGCCGAAGACCCATACA 60.391 55.000 0.00 0.00 35.63 2.29
1496 1633 2.615447 CAAGTACCGCTACCGATGACTA 59.385 50.000 0.00 0.00 36.29 2.59
1581 1719 2.299013 TGATGCGTCAAGTTCCACTACT 59.701 45.455 6.04 0.00 0.00 2.57
1621 1759 1.750399 ATGATGACCCGCCAAGCAC 60.750 57.895 0.00 0.00 0.00 4.40
1628 1766 0.102481 ACGTCTACATGATGACCCGC 59.898 55.000 0.00 0.00 35.71 6.13
1630 1768 4.820716 AGTACTACGTCTACATGATGACCC 59.179 45.833 0.00 0.00 35.71 4.46
1671 1809 0.965439 CCCCAAAGATTTTGGACGCA 59.035 50.000 19.41 0.00 42.06 5.24
1686 1824 3.721868 GTCCAAGGACGATCCCCA 58.278 61.111 3.08 0.00 37.19 4.96
1708 1846 1.812686 TTGAACCGAGGAGACCACCG 61.813 60.000 0.00 0.00 34.73 4.94
1723 1861 2.223782 GCCTTTGCACATCACTGTTGAA 60.224 45.455 0.00 0.00 34.36 2.69
1805 1943 2.105930 CTCTGCCTCCGCTAGCAC 59.894 66.667 16.45 0.00 34.68 4.40
1823 1961 1.293498 CAGGACCTCCTTGTCGTGG 59.707 63.158 0.00 0.00 46.09 4.94
1830 1968 2.685380 CCGGAGCAGGACCTCCTT 60.685 66.667 0.00 0.00 46.09 3.36
1853 1991 3.041940 CGTCCGTCCACCACTTGC 61.042 66.667 0.00 0.00 0.00 4.01
1871 2009 2.263741 AAAGCCTTGTCGCTGCCTG 61.264 57.895 0.00 0.00 39.64 4.85
1880 2018 0.886490 CCTCACGCTCAAAGCCTTGT 60.886 55.000 0.00 0.00 38.18 3.16
1888 2026 0.541998 TCCTTCTCCCTCACGCTCAA 60.542 55.000 0.00 0.00 0.00 3.02
1889 2027 0.967887 CTCCTTCTCCCTCACGCTCA 60.968 60.000 0.00 0.00 0.00 4.26
1891 2029 2.355193 GCTCCTTCTCCCTCACGCT 61.355 63.158 0.00 0.00 0.00 5.07
1914 2052 2.620886 CCTCTACTTCTCCTTCCCACGA 60.621 54.545 0.00 0.00 0.00 4.35
1916 2054 2.112190 CCCTCTACTTCTCCTTCCCAC 58.888 57.143 0.00 0.00 0.00 4.61
1937 2075 0.384309 TCCTAGCCGCATTGACTACG 59.616 55.000 0.00 0.00 0.00 3.51
1946 2084 3.826754 CTGCTCGTCCTAGCCGCA 61.827 66.667 0.00 0.00 42.05 5.69
1956 2094 0.179043 TCTCCTATCTCGCTGCTCGT 60.179 55.000 0.00 0.00 39.67 4.18
1963 2101 2.360801 AGTTCTGCTTCTCCTATCTCGC 59.639 50.000 0.00 0.00 0.00 5.03
1968 2106 2.419297 CGCCAAGTTCTGCTTCTCCTAT 60.419 50.000 0.00 0.00 34.69 2.57
2024 2162 2.124819 AGCTCAAGCCTCGCCATG 60.125 61.111 0.00 0.00 43.38 3.66
2029 2167 2.186384 CCAGGAGCTCAAGCCTCG 59.814 66.667 17.19 0.00 43.38 4.63
2033 2171 2.817396 GTCGCCAGGAGCTCAAGC 60.817 66.667 17.19 13.50 40.39 4.01
2047 2185 3.764466 AAGCTCCTCGCCCTGTCG 61.764 66.667 0.00 0.00 40.39 4.35
2048 2186 2.125350 CAAGCTCCTCGCCCTGTC 60.125 66.667 0.00 0.00 40.39 3.51
2051 2189 3.080121 CCTCAAGCTCCTCGCCCT 61.080 66.667 0.00 0.00 40.39 5.19
2091 2229 4.162690 CTAGCACGCCAGGGACCC 62.163 72.222 0.59 0.59 0.00 4.46
2103 2241 2.835431 GCTCCCGCCTCTCTAGCA 60.835 66.667 0.00 0.00 33.38 3.49
2120 2258 3.080121 AGGCTCCTCTTCCAGGCG 61.080 66.667 0.00 0.00 43.08 5.52
2151 2289 2.528818 CCAGGAAGGCCACCTCACA 61.529 63.158 16.97 0.00 35.35 3.58
2262 2400 2.411290 CTTCGCTCTCCTCCTCGC 59.589 66.667 0.00 0.00 0.00 5.03
2284 2422 2.517402 CTCGACCCCCTCCTCTCG 60.517 72.222 0.00 0.00 0.00 4.04
2302 2440 0.914417 CCCCTACTCTTTCCCCAGCA 60.914 60.000 0.00 0.00 0.00 4.41
2306 2444 1.049402 CGATCCCCTACTCTTTCCCC 58.951 60.000 0.00 0.00 0.00 4.81
2346 2484 1.147824 CATTCCCTCTCATGCCGCT 59.852 57.895 0.00 0.00 0.00 5.52
2352 2490 1.855599 CTTTCCCCCATTCCCTCTCAT 59.144 52.381 0.00 0.00 0.00 2.90
2363 2501 2.530661 TTCGCTCCCTTTCCCCCA 60.531 61.111 0.00 0.00 0.00 4.96
2364 2502 2.045242 GTTCGCTCCCTTTCCCCC 60.045 66.667 0.00 0.00 0.00 5.40
2365 2503 2.436115 CGTTCGCTCCCTTTCCCC 60.436 66.667 0.00 0.00 0.00 4.81
2537 2695 6.068670 CCTAACCTCCCTTTCTTTTCTTTCA 58.931 40.000 0.00 0.00 0.00 2.69
2563 2726 5.471556 TTATCCGTGTGTCCAACTTCTTA 57.528 39.130 0.00 0.00 0.00 2.10
2605 2768 1.393603 TTTTCATGGACCGTGCACAA 58.606 45.000 18.64 0.00 0.00 3.33
2689 2852 6.126273 ACCTTCCTTTTACCAAGTCCTAGTTT 60.126 38.462 0.00 0.00 0.00 2.66
2740 2903 2.084546 CTTTCATCACTTTCCGGGACC 58.915 52.381 0.00 0.00 0.00 4.46
2742 2905 1.982226 TCCTTTCATCACTTTCCGGGA 59.018 47.619 0.00 0.00 0.00 5.14
2802 2966 5.695816 ACACTTGCAAAATAAATCGCAATGT 59.304 32.000 0.00 0.00 42.95 2.71
2808 2972 6.129115 CCAGAACACACTTGCAAAATAAATCG 60.129 38.462 0.00 0.00 0.00 3.34
2894 3058 6.603201 GGGAATTCACATGGTGATTTCTCTTA 59.397 38.462 22.65 1.37 43.83 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.