Multiple sequence alignment - TraesCS3A01G240700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G240700 chr3A 100.000 2737 0 0 1 2737 451851024 451853760 0.000000e+00 5055.0
1 TraesCS3A01G240700 chr3A 95.312 2197 96 5 543 2737 451861096 451863287 0.000000e+00 3480.0
2 TraesCS3A01G240700 chr3A 85.692 1307 155 29 1449 2737 208429304 208430596 0.000000e+00 1349.0
3 TraesCS3A01G240700 chr3A 85.758 1306 137 42 1449 2737 603227925 603229198 0.000000e+00 1336.0
4 TraesCS3A01G240700 chr3A 89.272 1072 100 14 1674 2737 610809770 610808706 0.000000e+00 1328.0
5 TraesCS3A01G240700 chr3A 85.344 1310 152 37 1449 2737 207400224 207401514 0.000000e+00 1319.0
6 TraesCS3A01G240700 chr3A 85.188 1303 148 39 1449 2737 603220052 603221323 0.000000e+00 1295.0
7 TraesCS3A01G240700 chr3A 84.804 1303 148 45 1450 2737 459158922 459160189 0.000000e+00 1264.0
8 TraesCS3A01G240700 chr3A 78.682 516 80 21 1 502 662486697 662486198 1.580000e-82 316.0
9 TraesCS3A01G240700 chr3A 77.718 561 79 35 1 533 270854424 270853882 4.430000e-78 302.0
10 TraesCS3A01G240700 chr3A 90.000 90 6 3 783 871 582461449 582461362 2.230000e-21 113.0
11 TraesCS3A01G240700 chr3A 88.889 90 7 3 783 871 383672008 383672095 1.040000e-19 108.0
12 TraesCS3A01G240700 chr3A 91.489 47 2 2 732 776 287223240 287223194 2.280000e-06 63.9
13 TraesCS3A01G240700 chr3A 91.489 47 2 2 732 776 287243299 287243253 2.280000e-06 63.9
14 TraesCS3A01G240700 chr5A 88.444 1298 120 26 1449 2737 599479418 599478142 0.000000e+00 1539.0
15 TraesCS3A01G240700 chr5A 85.726 1226 129 38 1537 2737 219796060 219794856 0.000000e+00 1253.0
16 TraesCS3A01G240700 chr5A 94.608 204 10 1 969 1172 179422347 179422549 5.690000e-82 315.0
17 TraesCS3A01G240700 chr5A 89.143 175 16 3 757 929 324441647 324441474 5.940000e-52 215.0
18 TraesCS3A01G240700 chr5A 94.488 127 6 1 757 883 324458128 324458003 7.730000e-46 195.0
19 TraesCS3A01G240700 chr5A 94.309 123 5 2 961 1081 347303907 347304029 1.290000e-43 187.0
20 TraesCS3A01G240700 chr5A 89.130 138 14 1 873 1009 203791607 203791470 1.300000e-38 171.0
21 TraesCS3A01G240700 chr6A 90.410 1074 89 13 1671 2737 130783179 130784245 0.000000e+00 1400.0
22 TraesCS3A01G240700 chr6A 89.479 1074 99 13 1671 2737 130810836 130811902 0.000000e+00 1345.0
23 TraesCS3A01G240700 chr6A 93.520 679 28 10 1 677 186200927 186201591 0.000000e+00 996.0
24 TraesCS3A01G240700 chr6A 93.218 693 19 12 1 677 186219580 186220260 0.000000e+00 994.0
25 TraesCS3A01G240700 chr6A 93.500 200 12 1 973 1172 223635442 223635244 2.060000e-76 296.0
26 TraesCS3A01G240700 chr6A 91.667 204 16 1 969 1172 242046367 242046569 5.770000e-72 281.0
27 TraesCS3A01G240700 chr6A 91.176 204 17 1 969 1172 242026789 242026991 2.680000e-70 276.0
28 TraesCS3A01G240700 chr6A 89.933 149 11 2 851 995 509916489 509916341 3.600000e-44 189.0
29 TraesCS3A01G240700 chr6A 87.919 149 14 2 851 995 509924607 509924459 3.620000e-39 172.0
30 TraesCS3A01G240700 chr6A 93.421 76 5 0 920 995 108473688 108473613 2.230000e-21 113.0
31 TraesCS3A01G240700 chr6A 95.349 43 1 1 730 771 236442499 236442541 1.760000e-07 67.6
32 TraesCS3A01G240700 chr1A 89.479 1074 99 14 1671 2737 260277855 260278921 0.000000e+00 1345.0
33 TraesCS3A01G240700 chr1A 93.824 680 28 9 1 677 231968620 231969288 0.000000e+00 1011.0
34 TraesCS3A01G240700 chr1A 92.619 691 25 16 1 682 226478609 226477936 0.000000e+00 970.0
35 TraesCS3A01G240700 chr1A 92.297 701 24 20 1 682 33462160 33461471 0.000000e+00 968.0
36 TraesCS3A01G240700 chr1A 92.011 701 26 16 1 682 231985800 231986489 0.000000e+00 957.0
37 TraesCS3A01G240700 chr1A 88.506 174 16 2 825 994 163669553 163669380 9.930000e-50 207.0
38 TraesCS3A01G240700 chr1A 95.000 40 1 1 732 771 380733106 380733144 8.180000e-06 62.1
39 TraesCS3A01G240700 chr4A 85.441 1305 139 45 1449 2737 683000855 683002124 0.000000e+00 1310.0
40 TraesCS3A01G240700 chr4A 92.867 701 20 13 1 682 554834903 554834214 0.000000e+00 990.0
41 TraesCS3A01G240700 chr4A 92.265 181 12 2 988 1166 512727963 512728143 3.500000e-64 255.0
42 TraesCS3A01G240700 chr4A 91.111 180 14 2 988 1165 512835225 512835404 2.720000e-60 243.0
43 TraesCS3A01G240700 chr4A 84.483 232 17 9 1 226 520904711 520904493 7.680000e-51 211.0
44 TraesCS3A01G240700 chr2A 93.218 693 25 16 1 682 244248944 244248263 0.000000e+00 1000.0
45 TraesCS3A01G240700 chr2A 92.297 701 24 17 1 682 244235604 244234915 0.000000e+00 968.0
46 TraesCS3A01G240700 chr2A 94.314 299 16 1 1166 1464 389255694 389255397 8.930000e-125 457.0
47 TraesCS3A01G240700 chr2A 93.645 299 18 1 1166 1464 389263849 389263552 1.930000e-121 446.0
48 TraesCS3A01G240700 chr2A 91.797 256 16 4 851 1101 420198799 420199054 4.340000e-93 351.0
49 TraesCS3A01G240700 chr2A 77.820 532 84 25 1 504 585897418 585897943 5.730000e-77 298.0
50 TraesCS3A01G240700 chr2A 76.822 535 80 31 1 504 500977445 500977966 7.520000e-66 261.0
51 TraesCS3A01G240700 chr2A 90.541 148 10 2 851 994 267820122 267819975 2.780000e-45 193.0
52 TraesCS3A01G240700 chr2A 93.496 123 6 1 851 971 267840103 267839981 6.020000e-42 182.0
53 TraesCS3A01G240700 chr2A 95.000 40 2 0 732 771 444350713 444350674 2.280000e-06 63.9
54 TraesCS3A01G240700 chr2A 92.500 40 3 0 732 771 444358792 444358753 1.060000e-04 58.4
55 TraesCS3A01G240700 chr3B 94.719 303 15 1 1162 1464 246361180 246360879 1.150000e-128 470.0
56 TraesCS3A01G240700 chr3B 93.399 303 19 1 1162 1464 246368940 246368639 5.380000e-122 448.0
57 TraesCS3A01G240700 chr6B 94.059 303 17 1 1162 1464 216544402 216544703 2.480000e-125 459.0
58 TraesCS3A01G240700 chr7B 93.729 303 18 1 1162 1464 497466117 497466418 1.160000e-123 453.0
59 TraesCS3A01G240700 chr4B 93.399 303 19 1 1162 1464 357977861 357977560 5.380000e-122 448.0
60 TraesCS3A01G240700 chr4B 93.289 298 19 1 1162 1459 577788692 577788396 3.240000e-119 438.0
61 TraesCS3A01G240700 chr7A 84.000 75 7 5 695 767 178719192 178719121 1.760000e-07 67.6
62 TraesCS3A01G240700 chr7A 81.609 87 8 8 687 771 178725596 178725516 6.330000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G240700 chr3A 451851024 451853760 2736 False 5055 5055 100.000 1 2737 1 chr3A.!!$F4 2736
1 TraesCS3A01G240700 chr3A 451861096 451863287 2191 False 3480 3480 95.312 543 2737 1 chr3A.!!$F5 2194
2 TraesCS3A01G240700 chr3A 208429304 208430596 1292 False 1349 1349 85.692 1449 2737 1 chr3A.!!$F2 1288
3 TraesCS3A01G240700 chr3A 603227925 603229198 1273 False 1336 1336 85.758 1449 2737 1 chr3A.!!$F8 1288
4 TraesCS3A01G240700 chr3A 610808706 610809770 1064 True 1328 1328 89.272 1674 2737 1 chr3A.!!$R5 1063
5 TraesCS3A01G240700 chr3A 207400224 207401514 1290 False 1319 1319 85.344 1449 2737 1 chr3A.!!$F1 1288
6 TraesCS3A01G240700 chr3A 603220052 603221323 1271 False 1295 1295 85.188 1449 2737 1 chr3A.!!$F7 1288
7 TraesCS3A01G240700 chr3A 459158922 459160189 1267 False 1264 1264 84.804 1450 2737 1 chr3A.!!$F6 1287
8 TraesCS3A01G240700 chr3A 270853882 270854424 542 True 302 302 77.718 1 533 1 chr3A.!!$R1 532
9 TraesCS3A01G240700 chr5A 599478142 599479418 1276 True 1539 1539 88.444 1449 2737 1 chr5A.!!$R5 1288
10 TraesCS3A01G240700 chr5A 219794856 219796060 1204 True 1253 1253 85.726 1537 2737 1 chr5A.!!$R2 1200
11 TraesCS3A01G240700 chr6A 130783179 130784245 1066 False 1400 1400 90.410 1671 2737 1 chr6A.!!$F1 1066
12 TraesCS3A01G240700 chr6A 130810836 130811902 1066 False 1345 1345 89.479 1671 2737 1 chr6A.!!$F2 1066
13 TraesCS3A01G240700 chr6A 186200927 186201591 664 False 996 996 93.520 1 677 1 chr6A.!!$F3 676
14 TraesCS3A01G240700 chr6A 186219580 186220260 680 False 994 994 93.218 1 677 1 chr6A.!!$F4 676
15 TraesCS3A01G240700 chr1A 260277855 260278921 1066 False 1345 1345 89.479 1671 2737 1 chr1A.!!$F3 1066
16 TraesCS3A01G240700 chr1A 231968620 231969288 668 False 1011 1011 93.824 1 677 1 chr1A.!!$F1 676
17 TraesCS3A01G240700 chr1A 226477936 226478609 673 True 970 970 92.619 1 682 1 chr1A.!!$R3 681
18 TraesCS3A01G240700 chr1A 33461471 33462160 689 True 968 968 92.297 1 682 1 chr1A.!!$R1 681
19 TraesCS3A01G240700 chr1A 231985800 231986489 689 False 957 957 92.011 1 682 1 chr1A.!!$F2 681
20 TraesCS3A01G240700 chr4A 683000855 683002124 1269 False 1310 1310 85.441 1449 2737 1 chr4A.!!$F3 1288
21 TraesCS3A01G240700 chr4A 554834214 554834903 689 True 990 990 92.867 1 682 1 chr4A.!!$R2 681
22 TraesCS3A01G240700 chr2A 244248263 244248944 681 True 1000 1000 93.218 1 682 1 chr2A.!!$R2 681
23 TraesCS3A01G240700 chr2A 244234915 244235604 689 True 968 968 92.297 1 682 1 chr2A.!!$R1 681
24 TraesCS3A01G240700 chr2A 585897418 585897943 525 False 298 298 77.820 1 504 1 chr2A.!!$F3 503
25 TraesCS3A01G240700 chr2A 500977445 500977966 521 False 261 261 76.822 1 504 1 chr2A.!!$F2 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 968 0.037882 CCCCATCATCATCTCCGACG 60.038 60.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 2028 1.269206 GGTAGACGACGGTGTCAAACA 60.269 52.381 11.22 0.0 41.41 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 91 8.488651 TGTCATCATATCATCATGTCATAAGC 57.511 34.615 0.00 0.00 0.00 3.09
165 197 9.661954 TGACTTCTCTTTATAACATATCCTCCT 57.338 33.333 0.00 0.00 0.00 3.69
549 597 2.566708 AAGAATGGAGAGAGGAGCCT 57.433 50.000 0.00 0.00 0.00 4.58
629 682 3.462678 GCCCGACCACTCCCTCTC 61.463 72.222 0.00 0.00 0.00 3.20
696 749 1.022903 ATCTCCCCTCCTCACCTCTT 58.977 55.000 0.00 0.00 0.00 2.85
725 778 3.129502 CAGCGCACCCAGTCCATG 61.130 66.667 11.47 0.00 0.00 3.66
728 781 2.821366 CGCACCCAGTCCATGCTC 60.821 66.667 0.00 0.00 37.20 4.26
729 782 2.352422 GCACCCAGTCCATGCTCA 59.648 61.111 0.00 0.00 36.40 4.26
818 871 0.039764 TTCCTCCTGCTTCTCCTCGA 59.960 55.000 0.00 0.00 0.00 4.04
819 872 0.260230 TCCTCCTGCTTCTCCTCGAT 59.740 55.000 0.00 0.00 0.00 3.59
828 881 0.250234 TTCTCCTCGATGGCACCAAG 59.750 55.000 0.00 0.00 35.26 3.61
841 894 4.821589 CCAAGCCGCCTCGACCTC 62.822 72.222 0.00 0.00 0.00 3.85
906 959 2.690510 TCCACGCCCCCATCATCA 60.691 61.111 0.00 0.00 0.00 3.07
915 968 0.037882 CCCCATCATCATCTCCGACG 60.038 60.000 0.00 0.00 0.00 5.12
916 969 0.676184 CCCATCATCATCTCCGACGT 59.324 55.000 0.00 0.00 0.00 4.34
995 1048 3.478274 CTGCAGCCTCCCCTCCTC 61.478 72.222 0.00 0.00 0.00 3.71
997 1050 2.283809 GCAGCCTCCCCTCCTCTA 59.716 66.667 0.00 0.00 0.00 2.43
1064 1117 2.203877 AGGTTGGACGGCCACCTA 60.204 61.111 24.81 2.52 45.94 3.08
1085 1138 2.105128 GATCCGCGAGTCCTGTGG 59.895 66.667 8.23 0.00 38.37 4.17
1105 1158 0.676782 CCGCCCTCTTCATTTTCGGT 60.677 55.000 0.00 0.00 0.00 4.69
1149 1202 2.747855 CCCGCCTCTGCCTTGTTC 60.748 66.667 0.00 0.00 0.00 3.18
1150 1203 2.032528 CCGCCTCTGCCTTGTTCA 59.967 61.111 0.00 0.00 0.00 3.18
1203 1256 2.225791 CTTGTCGCGACCAGGATCCA 62.226 60.000 34.34 12.25 0.00 3.41
1229 1282 3.695606 GCGCCTCTGGTCACCTCA 61.696 66.667 0.00 0.00 0.00 3.86
1231 1284 2.665603 GCCTCTGGTCACCTCACC 59.334 66.667 0.00 0.00 36.90 4.02
1232 1285 2.217038 GCCTCTGGTCACCTCACCA 61.217 63.158 0.00 0.00 44.69 4.17
1244 1297 2.121735 TCACCACCCCATCACCCA 60.122 61.111 0.00 0.00 0.00 4.51
1288 1341 3.842923 ATCTCTGCCGCCTCCACG 61.843 66.667 0.00 0.00 0.00 4.94
1339 1392 3.036429 GCAAGTCCCTCGATGCCCT 62.036 63.158 0.00 0.00 32.73 5.19
1397 1450 3.678072 CGCCAAGTTCGTCTTCAAATCTA 59.322 43.478 0.00 0.00 33.63 1.98
1416 1469 4.696455 TCTACACGACTACATCCGATGTA 58.304 43.478 18.22 18.22 44.38 2.29
1433 1486 4.876107 CGATGTAGATTTTGGCAAGTACCT 59.124 41.667 0.00 0.00 0.00 3.08
1434 1487 5.220662 CGATGTAGATTTTGGCAAGTACCTG 60.221 44.000 0.00 0.00 0.00 4.00
1445 1498 1.004745 CAAGTACCTGGAGGCCACAAT 59.995 52.381 5.01 0.00 39.32 2.71
1446 1499 1.372501 AGTACCTGGAGGCCACAATT 58.627 50.000 5.01 0.00 39.32 2.32
1447 1500 2.557869 AGTACCTGGAGGCCACAATTA 58.442 47.619 5.01 0.00 39.32 1.40
1466 1519 1.952133 CGCCAAGTTCCACGACGAA 60.952 57.895 0.00 0.00 0.00 3.85
1478 1531 0.874390 ACGACGAACTAAGTACCGCA 59.126 50.000 0.00 0.00 0.00 5.69
1544 1597 6.690569 ACCCCTACAACAAGTATACCTCTAT 58.309 40.000 0.00 0.00 30.93 1.98
1562 1616 2.093306 ATCGTGTCTTTGGAATCGCA 57.907 45.000 0.00 0.00 0.00 5.10
1647 1701 6.288941 TCTCCAAAAATGAGACGTATACCA 57.711 37.500 0.00 0.00 34.03 3.25
1814 1870 3.244112 CGTGAACAACTACTTCCCCTTCT 60.244 47.826 0.00 0.00 0.00 2.85
1953 2014 0.535328 TTGAAATCCGCCCGTGAACA 60.535 50.000 0.00 0.00 0.00 3.18
2289 2378 4.525912 GCTAAAGGCATATGGGGATTTG 57.474 45.455 4.56 0.00 41.35 2.32
2602 2701 1.858458 GTTGTTTGCTTTCTTTCCGGC 59.142 47.619 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
629 682 3.591835 GAGGCGAGGGAGAGAGCG 61.592 72.222 0.00 0.00 0.00 5.03
674 727 1.768077 GGTGAGGAGGGGAGATGGG 60.768 68.421 0.00 0.00 0.00 4.00
696 749 4.704833 GCGCTGCAGGGAGGAACA 62.705 66.667 32.72 0.00 0.00 3.18
723 776 1.704070 GGGAGATGAGGGATTGAGCAT 59.296 52.381 0.00 0.00 0.00 3.79
724 777 1.135094 GGGAGATGAGGGATTGAGCA 58.865 55.000 0.00 0.00 0.00 4.26
725 778 1.347378 GAGGGAGATGAGGGATTGAGC 59.653 57.143 0.00 0.00 0.00 4.26
728 781 1.709578 TCGAGGGAGATGAGGGATTG 58.290 55.000 0.00 0.00 0.00 2.67
729 782 2.534990 GATCGAGGGAGATGAGGGATT 58.465 52.381 0.00 0.00 0.00 3.01
877 930 4.803426 CGTGGAGGTCGCTGGCTC 62.803 72.222 0.00 0.00 0.00 4.70
981 1034 1.458588 GGTAGAGGAGGGGAGGCTG 60.459 68.421 0.00 0.00 0.00 4.85
995 1048 0.531532 CGAGCTTGAGGCCATGGTAG 60.532 60.000 14.67 4.77 43.05 3.18
997 1050 2.270205 CGAGCTTGAGGCCATGGT 59.730 61.111 14.67 0.00 43.05 3.55
1058 1111 4.280494 CGCGGATCCGGTAGGTGG 62.280 72.222 33.98 5.43 40.19 4.61
1064 1117 4.816984 AGGACTCGCGGATCCGGT 62.817 66.667 33.98 23.60 40.20 5.28
1085 1138 1.429423 CGAAAATGAAGAGGGCGGC 59.571 57.895 0.00 0.00 0.00 6.53
1134 1187 0.040067 GTTTGAACAAGGCAGAGGCG 60.040 55.000 0.00 0.00 42.47 5.52
1149 1202 1.797025 GACGTCCTCCTTCCTGTTTG 58.203 55.000 3.51 0.00 0.00 2.93
1150 1203 0.317479 CGACGTCCTCCTTCCTGTTT 59.683 55.000 10.58 0.00 0.00 2.83
1229 1282 0.925720 ATGATGGGTGATGGGGTGGT 60.926 55.000 0.00 0.00 0.00 4.16
1231 1284 0.259647 ACATGATGGGTGATGGGGTG 59.740 55.000 0.00 0.00 0.00 4.61
1232 1285 0.259647 CACATGATGGGTGATGGGGT 59.740 55.000 0.00 0.00 38.54 4.95
1244 1297 2.592574 CGGATGCGGGCACATGAT 60.593 61.111 0.00 0.00 0.00 2.45
1321 1374 2.514824 GGGCATCGAGGGACTTGC 60.515 66.667 0.00 0.00 41.55 4.01
1339 1392 3.009723 GCCGGTCTTGATGAATCTGAAA 58.990 45.455 1.90 0.00 0.00 2.69
1374 1427 1.658994 TTTGAAGACGAACTTGGCGT 58.341 45.000 0.00 0.00 45.79 5.68
1416 1469 3.562176 CCTCCAGGTACTTGCCAAAATCT 60.562 47.826 0.00 0.00 34.60 2.40
1422 1475 2.602676 GGCCTCCAGGTACTTGCCA 61.603 63.158 0.00 0.00 34.60 4.92
1433 1486 1.377987 GGCGTAATTGTGGCCTCCA 60.378 57.895 3.32 0.00 43.52 3.86
1434 1487 0.963355 TTGGCGTAATTGTGGCCTCC 60.963 55.000 3.32 0.00 46.97 4.30
1445 1498 0.940519 CGTCGTGGAACTTGGCGTAA 60.941 55.000 0.00 0.00 31.75 3.18
1446 1499 1.372004 CGTCGTGGAACTTGGCGTA 60.372 57.895 0.00 0.00 31.75 4.42
1447 1500 2.632136 TTCGTCGTGGAACTTGGCGT 62.632 55.000 0.00 0.00 33.55 5.68
1466 1519 0.316204 ACGTGCTTGCGGTACTTAGT 59.684 50.000 0.00 0.00 35.98 2.24
1468 1521 1.527736 CAAACGTGCTTGCGGTACTTA 59.472 47.619 0.00 0.00 35.98 2.24
1478 1531 2.608752 CGGTAGAGGTACAAACGTGCTT 60.609 50.000 0.00 0.00 0.00 3.91
1544 1597 1.872388 TTGCGATTCCAAAGACACGA 58.128 45.000 0.00 0.00 0.00 4.35
1562 1616 0.182775 AGGGGTGCTTGACGTTCTTT 59.817 50.000 0.00 0.00 0.00 2.52
1647 1701 3.065095 GTCTCTATTCTTGCGACGGTAGT 59.935 47.826 0.00 0.00 0.00 2.73
1664 1718 0.882474 CTTCGGACTTGTCGGTCTCT 59.118 55.000 7.92 0.00 36.55 3.10
1814 1870 1.544724 GTGGTAGGGGTACACGTGTA 58.455 55.000 24.10 24.10 0.00 2.90
1953 2014 5.068591 GGTGTCAAACAAGGGAACAACTAAT 59.931 40.000 0.00 0.00 0.00 1.73
1967 2028 1.269206 GGTAGACGACGGTGTCAAACA 60.269 52.381 11.22 0.00 41.41 2.83
2289 2378 2.715737 TAGCAAACAACAAATCCGGC 57.284 45.000 0.00 0.00 0.00 6.13
2602 2701 1.792006 ACTAACCCGAAGAAGCAACG 58.208 50.000 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.