Multiple sequence alignment - TraesCS3A01G240300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G240300 chr3A 100.000 2384 0 0 1 2384 450956008 450953625 0.000000e+00 4403
1 TraesCS3A01G240300 chr3A 92.500 120 9 0 1959 2078 727377401 727377520 3.150000e-39 172
2 TraesCS3A01G240300 chr3B 89.056 1133 63 26 289 1405 432340026 432338939 0.000000e+00 1349
3 TraesCS3A01G240300 chr3B 90.323 589 40 12 1403 1982 432338900 432338320 0.000000e+00 756
4 TraesCS3A01G240300 chr3B 89.888 267 13 7 6 272 432340266 432340014 4.910000e-87 331
5 TraesCS3A01G240300 chr3B 84.192 291 19 12 2099 2384 432338169 432337901 8.460000e-65 257
6 TraesCS3A01G240300 chr3B 90.323 124 10 2 1965 2088 12156967 12156846 6.820000e-36 161
7 TraesCS3A01G240300 chr3D 87.900 719 46 18 711 1405 333286931 333286230 0.000000e+00 808
8 TraesCS3A01G240300 chr3D 84.452 566 32 6 1403 1965 333286189 333285677 7.600000e-140 507
9 TraesCS3A01G240300 chr3D 87.425 334 29 7 297 625 333287641 333287316 2.890000e-99 372
10 TraesCS3A01G240300 chr3D 88.285 239 14 8 1 239 333288203 333287979 8.400000e-70 274
11 TraesCS3A01G240300 chr3D 96.610 118 4 0 2267 2384 333285553 333285436 1.870000e-46 196
12 TraesCS3A01G240300 chr3D 89.062 128 9 2 2068 2195 333285673 333285551 1.140000e-33 154
13 TraesCS3A01G240300 chr7D 95.161 124 6 0 522 645 626261002 626261125 1.870000e-46 196
14 TraesCS3A01G240300 chr7D 95.370 108 5 0 1965 2072 151024139 151024032 3.150000e-39 172
15 TraesCS3A01G240300 chr2D 93.220 118 7 1 1964 2080 536223602 536223485 3.150000e-39 172
16 TraesCS3A01G240300 chr4A 94.545 110 6 0 1964 2073 7404640 7404749 1.130000e-38 171
17 TraesCS3A01G240300 chr7A 93.750 112 7 0 1962 2073 269960317 269960428 4.080000e-38 169
18 TraesCS3A01G240300 chr6D 90.400 125 12 0 1948 2072 426282122 426281998 5.270000e-37 165
19 TraesCS3A01G240300 chr2A 92.241 116 8 1 1960 2074 112747965 112747850 1.900000e-36 163
20 TraesCS3A01G240300 chr5B 90.244 123 10 2 1952 2074 666202110 666201990 2.450000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G240300 chr3A 450953625 450956008 2383 True 4403.000000 4403 100.000000 1 2384 1 chr3A.!!$R1 2383
1 TraesCS3A01G240300 chr3B 432337901 432340266 2365 True 673.250000 1349 88.364750 6 2384 4 chr3B.!!$R2 2378
2 TraesCS3A01G240300 chr3D 333285436 333288203 2767 True 385.166667 808 88.955667 1 2384 6 chr3D.!!$R1 2383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.170561 CCGTGTCCTCACTTCGGTAG 59.829 60.0 0.0 0.0 41.89 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 2451 0.034186 TATTTGGCACCTGCTCCTGG 60.034 55.0 0.0 0.0 41.7 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.325135 AGAGGTCAAACAAGATTCTCCGT 59.675 43.478 0.00 0.00 0.00 4.69
39 40 3.403038 AGGTCAAACAAGATTCTCCGTG 58.597 45.455 0.00 0.00 0.00 4.94
40 41 3.139077 GGTCAAACAAGATTCTCCGTGT 58.861 45.455 0.00 0.00 0.00 4.49
41 42 3.186613 GGTCAAACAAGATTCTCCGTGTC 59.813 47.826 0.00 0.00 0.00 3.67
42 43 3.186613 GTCAAACAAGATTCTCCGTGTCC 59.813 47.826 0.00 0.00 0.00 4.02
43 44 3.071023 TCAAACAAGATTCTCCGTGTCCT 59.929 43.478 0.00 0.00 0.00 3.85
44 45 3.320673 AACAAGATTCTCCGTGTCCTC 57.679 47.619 0.00 0.00 0.00 3.71
45 46 2.248248 ACAAGATTCTCCGTGTCCTCA 58.752 47.619 0.00 0.00 0.00 3.86
46 47 2.028930 ACAAGATTCTCCGTGTCCTCAC 60.029 50.000 0.00 0.00 40.79 3.51
48 49 2.530701 AGATTCTCCGTGTCCTCACTT 58.469 47.619 0.00 0.00 41.89 3.16
49 50 2.494073 AGATTCTCCGTGTCCTCACTTC 59.506 50.000 0.00 0.00 41.89 3.01
50 51 0.596577 TTCTCCGTGTCCTCACTTCG 59.403 55.000 0.00 0.00 41.89 3.79
51 52 1.213013 CTCCGTGTCCTCACTTCGG 59.787 63.158 0.00 0.00 41.89 4.30
52 53 1.524863 CTCCGTGTCCTCACTTCGGT 61.525 60.000 0.00 0.00 41.89 4.69
53 54 0.250858 TCCGTGTCCTCACTTCGGTA 60.251 55.000 0.00 0.00 41.89 4.02
54 55 0.170561 CCGTGTCCTCACTTCGGTAG 59.829 60.000 0.00 0.00 41.89 3.18
65 66 7.648510 GTCCTCACTTCGGTAGTAATGAATTAG 59.351 40.741 0.00 0.00 34.56 1.73
67 68 8.627403 CCTCACTTCGGTAGTAATGAATTAGTA 58.373 37.037 0.00 0.00 34.56 1.82
111 112 1.678123 CCTCCAGCACCACAGATTCTG 60.678 57.143 12.17 12.17 37.52 3.02
242 243 2.983592 CCTTTGCACGGGGGTGTC 60.984 66.667 0.00 0.00 0.00 3.67
251 252 2.044946 GGGGGTGTCCTGTGCATC 60.045 66.667 0.00 0.00 35.33 3.91
269 270 4.611310 CATCCATGCAGAACACTTGTAG 57.389 45.455 0.00 0.00 0.00 2.74
270 271 2.426522 TCCATGCAGAACACTTGTAGC 58.573 47.619 0.00 0.00 0.00 3.58
271 272 2.038952 TCCATGCAGAACACTTGTAGCT 59.961 45.455 0.00 0.00 0.00 3.32
272 273 2.816087 CCATGCAGAACACTTGTAGCTT 59.184 45.455 0.00 0.00 0.00 3.74
273 274 3.254166 CCATGCAGAACACTTGTAGCTTT 59.746 43.478 0.00 0.00 0.00 3.51
275 276 4.981806 TGCAGAACACTTGTAGCTTTTT 57.018 36.364 0.00 0.00 0.00 1.94
302 600 7.249147 TCGATAAAGAGAACACTTGTAGCTAC 58.751 38.462 17.30 17.30 0.00 3.58
339 637 8.490355 CAGCATTTGTCCTTTTGTTCTTATTTC 58.510 33.333 0.00 0.00 0.00 2.17
368 670 3.641437 TTCAGCATTTCTTCCCAAACG 57.359 42.857 0.00 0.00 0.00 3.60
385 687 2.665185 GTTTCCGACGCAGCACCT 60.665 61.111 0.00 0.00 0.00 4.00
389 691 3.726517 CCGACGCAGCACCTTTGG 61.727 66.667 0.00 0.00 0.00 3.28
410 712 1.133450 CAGCAGTAGGTAGCCTCCCTA 60.133 57.143 0.00 0.00 34.61 3.53
411 713 1.146152 AGCAGTAGGTAGCCTCCCTAG 59.854 57.143 0.00 0.00 35.26 3.02
412 714 1.133419 GCAGTAGGTAGCCTCCCTAGT 60.133 57.143 0.00 0.00 38.50 2.57
413 715 2.107901 GCAGTAGGTAGCCTCCCTAGTA 59.892 54.545 0.00 0.00 36.32 1.82
414 716 3.753815 CAGTAGGTAGCCTCCCTAGTAC 58.246 54.545 0.00 0.00 36.32 2.73
447 749 3.933861 ATAAAGCCCCGAGAAACAGAT 57.066 42.857 0.00 0.00 0.00 2.90
448 750 2.586648 AAAGCCCCGAGAAACAGATT 57.413 45.000 0.00 0.00 0.00 2.40
498 800 1.269703 TTTCCCTTCCCTACCTCGGC 61.270 60.000 0.00 0.00 0.00 5.54
514 816 1.675641 GGCTCAAATCACCCACGCT 60.676 57.895 0.00 0.00 0.00 5.07
521 823 2.809861 AATCACCCACGCTGCCTCAG 62.810 60.000 0.00 0.00 34.12 3.35
689 991 4.344865 GCCTCCCCTTCACCGCAA 62.345 66.667 0.00 0.00 0.00 4.85
717 1318 0.392336 GCTGCTCCTACCTGATCTGG 59.608 60.000 16.56 16.56 0.00 3.86
729 1330 3.181440 ACCTGATCTGGTGAAGCTCAAAA 60.181 43.478 22.30 0.00 39.17 2.44
794 1395 3.982372 GATCGCCGTCGCCAGAACA 62.982 63.158 0.00 0.00 35.26 3.18
840 1441 5.188434 TCTTGCTGATACTCCATTTCCTTG 58.812 41.667 0.00 0.00 0.00 3.61
843 1444 6.061022 TGCTGATACTCCATTTCCTTGTTA 57.939 37.500 0.00 0.00 0.00 2.41
844 1445 6.480763 TGCTGATACTCCATTTCCTTGTTAA 58.519 36.000 0.00 0.00 0.00 2.01
870 1471 6.583562 ACTACATAGGAGTAAATTCACAGCC 58.416 40.000 0.00 0.00 0.00 4.85
871 1472 4.442706 ACATAGGAGTAAATTCACAGCCG 58.557 43.478 0.00 0.00 0.00 5.52
872 1473 4.081087 ACATAGGAGTAAATTCACAGCCGT 60.081 41.667 0.00 0.00 0.00 5.68
874 1475 2.038557 AGGAGTAAATTCACAGCCGTGT 59.961 45.455 0.00 0.00 44.02 4.49
875 1476 3.259876 AGGAGTAAATTCACAGCCGTGTA 59.740 43.478 0.00 0.00 44.02 2.90
877 1478 3.596214 AGTAAATTCACAGCCGTGTAGG 58.404 45.455 0.00 0.00 44.02 3.18
878 1479 2.851263 AAATTCACAGCCGTGTAGGA 57.149 45.000 0.00 0.00 45.00 2.94
879 1480 3.350219 AAATTCACAGCCGTGTAGGAT 57.650 42.857 0.00 0.00 45.00 3.24
880 1481 4.481368 AAATTCACAGCCGTGTAGGATA 57.519 40.909 0.00 0.00 45.00 2.59
882 1483 2.139323 TCACAGCCGTGTAGGATAGT 57.861 50.000 0.00 0.00 45.00 2.12
883 1484 3.286329 TCACAGCCGTGTAGGATAGTA 57.714 47.619 0.00 0.00 45.00 1.82
885 1486 1.945394 ACAGCCGTGTAGGATAGTACG 59.055 52.381 0.00 0.00 45.00 3.67
886 1487 1.945394 CAGCCGTGTAGGATAGTACGT 59.055 52.381 0.00 0.00 45.00 3.57
888 1489 1.672881 GCCGTGTAGGATAGTACGTGT 59.327 52.381 0.00 0.00 45.00 4.49
889 1490 2.872245 GCCGTGTAGGATAGTACGTGTA 59.128 50.000 0.00 0.00 45.00 2.90
890 1491 3.059325 GCCGTGTAGGATAGTACGTGTAG 60.059 52.174 0.00 0.00 45.00 2.74
892 1493 3.806521 CGTGTAGGATAGTACGTGTAGCT 59.193 47.826 0.00 0.00 30.54 3.32
897 1511 6.544931 TGTAGGATAGTACGTGTAGCTCAAAT 59.455 38.462 0.00 0.00 0.00 2.32
976 1590 6.295180 CCAGATACTAGCATGAGACATGACAT 60.295 42.308 14.65 0.00 0.00 3.06
1077 1691 2.807045 CGAGAGACGCACCTGCAC 60.807 66.667 0.00 0.00 42.21 4.57
1078 1692 2.340078 GAGAGACGCACCTGCACA 59.660 61.111 0.00 0.00 42.21 4.57
1079 1693 1.079543 GAGAGACGCACCTGCACAT 60.080 57.895 0.00 0.00 42.21 3.21
1080 1694 1.357258 GAGAGACGCACCTGCACATG 61.357 60.000 0.00 0.00 42.21 3.21
1081 1695 3.031964 GAGACGCACCTGCACATGC 62.032 63.158 7.27 7.27 42.21 4.06
1196 1821 0.663269 CGCGCAGGGAAAAGAAAACC 60.663 55.000 8.75 0.00 46.37 3.27
1203 1828 4.335315 GCAGGGAAAAGAAAACCCAAAAAG 59.665 41.667 0.00 0.00 45.43 2.27
1240 1865 3.181367 GCCTCGGCAAGTGTGATG 58.819 61.111 2.41 0.00 41.49 3.07
1245 1870 1.204704 CTCGGCAAGTGTGATGTCCTA 59.795 52.381 0.00 0.00 0.00 2.94
1311 1941 2.580815 CCATGCACGCAGAGGAGA 59.419 61.111 7.35 0.00 0.00 3.71
1312 1942 1.521010 CCATGCACGCAGAGGAGAG 60.521 63.158 7.35 0.00 0.00 3.20
1313 1943 1.521010 CATGCACGCAGAGGAGAGG 60.521 63.158 0.00 0.00 0.00 3.69
1314 1944 1.683707 ATGCACGCAGAGGAGAGGA 60.684 57.895 0.00 0.00 0.00 3.71
1315 1945 1.674764 ATGCACGCAGAGGAGAGGAG 61.675 60.000 0.00 0.00 0.00 3.69
1316 1946 2.347322 GCACGCAGAGGAGAGGAGT 61.347 63.158 0.00 0.00 0.00 3.85
1317 1947 1.806568 CACGCAGAGGAGAGGAGTC 59.193 63.158 0.00 0.00 0.00 3.36
1318 1948 1.747367 ACGCAGAGGAGAGGAGTCG 60.747 63.158 0.00 0.00 0.00 4.18
1346 1976 2.580867 GCTCGGTAGCGCTGACAG 60.581 66.667 22.90 14.53 39.39 3.51
1363 1993 0.665670 CAGGAGCTATGCGGTGATCG 60.666 60.000 0.00 0.00 42.76 3.69
1364 1994 0.823769 AGGAGCTATGCGGTGATCGA 60.824 55.000 0.00 0.00 42.43 3.59
1365 1995 0.664767 GGAGCTATGCGGTGATCGAC 60.665 60.000 0.00 0.00 42.43 4.20
1366 1996 0.664767 GAGCTATGCGGTGATCGACC 60.665 60.000 0.00 4.71 42.43 4.79
1444 2117 2.698855 AGGGAATGGTCGAGTTCATG 57.301 50.000 7.25 0.00 0.00 3.07
1454 2127 3.385111 GGTCGAGTTCATGTCTAGGGATT 59.615 47.826 0.00 0.00 0.00 3.01
1473 2146 4.079730 GGATTAGGGAATGGTTGAGTTCCT 60.080 45.833 4.36 0.00 42.76 3.36
1483 2156 2.375146 GTTGAGTTCCTGGGTGTTTGT 58.625 47.619 0.00 0.00 0.00 2.83
1485 2158 1.843851 TGAGTTCCTGGGTGTTTGTCT 59.156 47.619 0.00 0.00 0.00 3.41
1487 2160 2.618709 GAGTTCCTGGGTGTTTGTCTTG 59.381 50.000 0.00 0.00 0.00 3.02
1498 2171 2.880268 TGTTTGTCTTGGAGTGCTCATG 59.120 45.455 1.41 0.00 0.00 3.07
1499 2172 1.527034 TTGTCTTGGAGTGCTCATGC 58.473 50.000 1.41 0.00 40.20 4.06
1610 2290 7.439356 GCGTATATACACGGATATACTCTACCA 59.561 40.741 13.22 0.00 40.72 3.25
1613 2293 3.144506 ACACGGATATACTCTACCACCG 58.855 50.000 0.00 0.00 43.61 4.94
1621 2301 0.902531 ACTCTACCACCGGACCATTG 59.097 55.000 9.46 0.00 0.00 2.82
1638 2318 6.771749 GGACCATTGAGAATTCTTGAGATGAT 59.228 38.462 9.87 0.00 0.00 2.45
1765 2451 1.163554 CCTGAACTGAAGGAGCTTGC 58.836 55.000 0.00 0.00 36.91 4.01
1772 2458 1.748500 GAAGGAGCTTGCCAGGAGC 60.749 63.158 0.00 0.00 44.14 4.70
1808 2494 2.676839 CAGTCCATTGCTGAGATCACAC 59.323 50.000 0.00 0.00 36.12 3.82
1815 2501 2.677199 TGCTGAGATCACACGACTTTC 58.323 47.619 0.00 0.00 0.00 2.62
1819 2505 2.492088 TGAGATCACACGACTTTCGGAT 59.508 45.455 0.00 0.00 45.59 4.18
1822 2508 0.669318 TCACACGACTTTCGGATGGC 60.669 55.000 0.03 0.00 45.59 4.40
1823 2509 0.948623 CACACGACTTTCGGATGGCA 60.949 55.000 0.03 0.00 45.59 4.92
1824 2510 0.250124 ACACGACTTTCGGATGGCAA 60.250 50.000 0.00 0.00 45.59 4.52
1882 2568 1.876156 GCTTCCTTCCTAATCATGCCG 59.124 52.381 0.00 0.00 0.00 5.69
1919 2605 8.730680 AGATTATGCCCTAATAAACGCTAAATG 58.269 33.333 0.00 0.00 29.93 2.32
1921 2607 3.316868 TGCCCTAATAAACGCTAAATGGC 59.683 43.478 0.00 0.00 35.75 4.40
1942 2628 4.922103 GGCGGAGTAATAAAATAGGAGACG 59.078 45.833 0.00 0.00 0.00 4.18
1972 2658 4.099573 CGTTCATGTATGTCCTACTCCCTT 59.900 45.833 0.00 0.00 0.00 3.95
1979 2665 0.455005 GTCCTACTCCCTTCGTTCCG 59.545 60.000 0.00 0.00 0.00 4.30
1991 2677 2.320805 TCGTTCCGAAGTACTTGTCG 57.679 50.000 14.14 11.46 37.01 4.35
1992 2678 0.706729 CGTTCCGAAGTACTTGTCGC 59.293 55.000 14.14 0.00 35.93 5.19
1993 2679 0.706729 GTTCCGAAGTACTTGTCGCG 59.293 55.000 14.14 10.07 35.93 5.87
1994 2680 0.387622 TTCCGAAGTACTTGTCGCGG 60.388 55.000 21.48 21.48 40.06 6.46
1995 2681 1.804326 CCGAAGTACTTGTCGCGGG 60.804 63.158 20.32 6.75 35.93 6.13
1998 2706 1.202222 CGAAGTACTTGTCGCGGGTAT 60.202 52.381 14.14 0.00 0.00 2.73
2003 2711 1.405872 ACTTGTCGCGGGTATGGATA 58.594 50.000 6.13 0.00 0.00 2.59
2007 2715 4.142227 ACTTGTCGCGGGTATGGATATATC 60.142 45.833 6.13 3.96 0.00 1.63
2009 2717 4.784177 TGTCGCGGGTATGGATATATCTA 58.216 43.478 6.13 6.97 0.00 1.98
2010 2718 4.820173 TGTCGCGGGTATGGATATATCTAG 59.180 45.833 6.13 0.00 0.00 2.43
2012 2720 5.706369 GTCGCGGGTATGGATATATCTAGAT 59.294 44.000 10.73 10.73 0.00 1.98
2013 2721 5.705905 TCGCGGGTATGGATATATCTAGATG 59.294 44.000 15.79 0.56 0.00 2.90
2044 2752 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
2045 2753 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
2048 2756 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2049 2757 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2051 2759 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2052 2760 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2053 2761 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2054 2762 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2056 2764 5.412640 TCCATTTCTGCGACGAGTAATTTA 58.587 37.500 0.00 0.00 0.00 1.40
2062 2803 4.916831 TCTGCGACGAGTAATTTAAAACGA 59.083 37.500 0.00 0.00 0.00 3.85
2071 2812 7.329471 ACGAGTAATTTAAAACGAAGGGAGTAC 59.671 37.037 0.00 0.00 0.00 2.73
2086 2827 5.148502 AGGGAGTACTATACACAGGATTGG 58.851 45.833 0.00 0.00 0.00 3.16
2089 2830 5.244178 GGAGTACTATACACAGGATTGGAGG 59.756 48.000 0.00 0.00 0.00 4.30
2096 2837 2.162681 CACAGGATTGGAGGGTTTGAC 58.837 52.381 0.00 0.00 0.00 3.18
2151 2893 2.924290 GCTACTGACGGCTTCAAACTAG 59.076 50.000 0.00 0.00 32.21 2.57
2153 2895 3.470645 ACTGACGGCTTCAAACTAGTT 57.529 42.857 1.12 1.12 32.21 2.24
2154 2896 3.805207 ACTGACGGCTTCAAACTAGTTT 58.195 40.909 15.22 15.22 32.21 2.66
2194 2938 4.660938 GGCCCGTGGACCAAAGCT 62.661 66.667 0.00 0.00 0.00 3.74
2195 2939 2.349755 GCCCGTGGACCAAAGCTA 59.650 61.111 0.00 0.00 0.00 3.32
2196 2940 1.077716 GCCCGTGGACCAAAGCTAT 60.078 57.895 0.00 0.00 0.00 2.97
2197 2941 1.376609 GCCCGTGGACCAAAGCTATG 61.377 60.000 0.00 0.00 0.00 2.23
2208 2952 2.331194 CAAAGCTATGCCAGTTTGTGC 58.669 47.619 0.00 0.00 0.00 4.57
2211 2955 2.359900 AGCTATGCCAGTTTGTGCTAC 58.640 47.619 0.00 0.00 0.00 3.58
2212 2956 2.026822 AGCTATGCCAGTTTGTGCTACT 60.027 45.455 0.00 0.00 0.00 2.57
2213 2957 3.197766 AGCTATGCCAGTTTGTGCTACTA 59.802 43.478 0.00 0.00 0.00 1.82
2214 2958 3.557595 GCTATGCCAGTTTGTGCTACTAG 59.442 47.826 0.00 0.00 0.00 2.57
2215 2959 3.703001 ATGCCAGTTTGTGCTACTAGT 57.297 42.857 0.00 0.00 0.00 2.57
2216 2960 4.819105 ATGCCAGTTTGTGCTACTAGTA 57.181 40.909 1.89 1.89 0.00 1.82
2217 2961 4.188247 TGCCAGTTTGTGCTACTAGTAG 57.812 45.455 23.25 23.25 36.29 2.57
2218 2962 3.576982 TGCCAGTTTGTGCTACTAGTAGT 59.423 43.478 26.76 8.14 35.65 2.73
2219 2963 4.768448 TGCCAGTTTGTGCTACTAGTAGTA 59.232 41.667 26.76 21.67 35.65 1.82
2220 2964 5.421056 TGCCAGTTTGTGCTACTAGTAGTAT 59.579 40.000 26.76 8.25 35.65 2.12
2221 2965 6.604396 TGCCAGTTTGTGCTACTAGTAGTATA 59.396 38.462 26.76 19.77 35.65 1.47
2277 3021 1.601914 GGTTGCTTTGCTTAACCACCG 60.602 52.381 0.00 0.00 42.60 4.94
2299 3043 6.039270 ACCGATGGAATGTACATTAAACATGG 59.961 38.462 25.35 24.77 37.62 3.66
2301 3045 7.040478 CCGATGGAATGTACATTAAACATGGAT 60.040 37.037 26.13 13.11 37.62 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.338012 TCATTACTACCGAAGTGAGGACA 58.662 43.478 1.13 0.00 39.39 4.02
39 40 4.978083 TCATTACTACCGAAGTGAGGAC 57.022 45.455 1.13 0.00 39.39 3.85
40 41 6.540438 AATTCATTACTACCGAAGTGAGGA 57.460 37.500 1.13 0.00 39.39 3.71
41 42 7.490000 ACTAATTCATTACTACCGAAGTGAGG 58.510 38.462 1.13 0.00 39.39 3.86
42 43 9.448294 GTACTAATTCATTACTACCGAAGTGAG 57.552 37.037 1.13 0.00 39.39 3.51
43 44 9.182214 AGTACTAATTCATTACTACCGAAGTGA 57.818 33.333 0.00 0.00 39.39 3.41
65 66 4.260948 GCCAGTGATAGTACGTGGTAGTAC 60.261 50.000 0.00 0.00 45.31 2.73
67 68 2.686915 GCCAGTGATAGTACGTGGTAGT 59.313 50.000 0.00 0.00 0.00 2.73
70 71 1.203994 GTGCCAGTGATAGTACGTGGT 59.796 52.381 0.00 0.00 0.00 4.16
71 72 1.470979 GGTGCCAGTGATAGTACGTGG 60.471 57.143 0.00 0.00 0.00 4.94
72 73 1.470979 GGGTGCCAGTGATAGTACGTG 60.471 57.143 0.00 0.00 0.00 4.49
128 129 0.670546 CAACTACTCGTGGCCACTGG 60.671 60.000 32.28 24.94 0.00 4.00
129 130 0.670546 CCAACTACTCGTGGCCACTG 60.671 60.000 32.28 25.41 0.00 3.66
130 131 1.119574 ACCAACTACTCGTGGCCACT 61.120 55.000 32.28 17.44 0.00 4.00
131 132 0.949105 CACCAACTACTCGTGGCCAC 60.949 60.000 26.78 26.78 0.00 5.01
132 133 1.116536 TCACCAACTACTCGTGGCCA 61.117 55.000 0.00 0.00 0.00 5.36
133 134 0.034337 TTCACCAACTACTCGTGGCC 59.966 55.000 0.00 0.00 0.00 5.36
134 135 2.094762 ATTCACCAACTACTCGTGGC 57.905 50.000 0.00 0.00 0.00 5.01
167 168 3.482436 TCGGTGCCAGATTTTGTTAAGT 58.518 40.909 0.00 0.00 0.00 2.24
195 196 3.902881 ATCTCAGTCTGGGCTTAACTG 57.097 47.619 0.00 7.17 41.38 3.16
251 252 2.430465 AGCTACAAGTGTTCTGCATGG 58.570 47.619 0.00 0.00 0.00 3.66
273 274 8.280497 GCTACAAGTGTTCTCTTTATCGAAAAA 58.720 33.333 0.00 0.00 0.00 1.94
275 276 7.152645 AGCTACAAGTGTTCTCTTTATCGAAA 58.847 34.615 0.00 0.00 0.00 3.46
276 277 6.688578 AGCTACAAGTGTTCTCTTTATCGAA 58.311 36.000 0.00 0.00 0.00 3.71
277 278 6.268825 AGCTACAAGTGTTCTCTTTATCGA 57.731 37.500 0.00 0.00 0.00 3.59
278 279 7.219154 CAGTAGCTACAAGTGTTCTCTTTATCG 59.781 40.741 25.28 0.00 0.00 2.92
279 280 7.009723 GCAGTAGCTACAAGTGTTCTCTTTATC 59.990 40.741 25.28 0.00 37.91 1.75
280 281 6.814146 GCAGTAGCTACAAGTGTTCTCTTTAT 59.186 38.462 25.28 0.00 37.91 1.40
281 282 6.157211 GCAGTAGCTACAAGTGTTCTCTTTA 58.843 40.000 25.28 0.00 37.91 1.85
282 283 4.991687 GCAGTAGCTACAAGTGTTCTCTTT 59.008 41.667 25.28 0.00 37.91 2.52
285 286 3.914312 TGCAGTAGCTACAAGTGTTCTC 58.086 45.455 25.28 3.83 42.74 2.87
286 287 4.499183 GATGCAGTAGCTACAAGTGTTCT 58.501 43.478 25.28 0.00 42.74 3.01
287 288 3.304559 CGATGCAGTAGCTACAAGTGTTC 59.695 47.826 25.28 13.93 42.74 3.18
288 289 3.056821 TCGATGCAGTAGCTACAAGTGTT 60.057 43.478 25.28 7.58 42.74 3.32
290 291 3.150848 TCGATGCAGTAGCTACAAGTG 57.849 47.619 25.28 15.72 42.74 3.16
291 292 4.142160 TGAATCGATGCAGTAGCTACAAGT 60.142 41.667 25.28 8.54 42.74 3.16
292 293 4.363138 TGAATCGATGCAGTAGCTACAAG 58.637 43.478 25.28 17.55 42.74 3.16
293 294 4.363138 CTGAATCGATGCAGTAGCTACAA 58.637 43.478 23.36 11.10 42.74 2.41
295 296 2.728839 GCTGAATCGATGCAGTAGCTAC 59.271 50.000 29.90 16.43 42.74 3.58
302 600 3.360533 GACAAATGCTGAATCGATGCAG 58.639 45.455 26.64 26.64 40.18 4.41
339 637 4.554973 GGAAGAAATGCTGAATCGTTTTCG 59.445 41.667 0.00 0.00 45.64 3.46
368 670 1.782028 AAAGGTGCTGCGTCGGAAAC 61.782 55.000 0.00 0.00 0.00 2.78
383 685 2.014068 GCTACCTACTGCTGCCAAAGG 61.014 57.143 9.04 9.04 32.82 3.11
385 687 0.035439 GGCTACCTACTGCTGCCAAA 60.035 55.000 0.00 0.00 42.79 3.28
389 691 1.443828 GGAGGCTACCTACTGCTGC 59.556 63.158 0.00 0.00 31.76 5.25
447 749 4.344865 GCTCCCTTGCCCCGTGAA 62.345 66.667 0.00 0.00 0.00 3.18
498 800 1.503542 GCAGCGTGGGTGATTTGAG 59.496 57.895 0.00 0.00 32.22 3.02
514 816 2.402572 CGAGCTCGAGTCTGAGGCA 61.403 63.158 32.06 0.00 43.02 4.75
689 991 2.104170 GGTAGGAGCAGCAGTCTTACT 58.896 52.381 0.00 0.00 29.57 2.24
717 1318 5.825507 AGAACAGAACATTTTGAGCTTCAC 58.174 37.500 0.00 0.00 0.00 3.18
729 1330 5.730550 TCACGGCTAATAAGAACAGAACAT 58.269 37.500 0.00 0.00 0.00 2.71
785 1386 2.743752 CGCATCTGGTGTTCTGGCG 61.744 63.158 0.00 0.00 36.93 5.69
794 1395 2.986306 GCAAGCAAGCGCATCTGGT 61.986 57.895 11.47 6.60 42.27 4.00
795 1396 1.371337 TAGCAAGCAAGCGCATCTGG 61.371 55.000 11.47 1.45 42.27 3.86
843 1444 9.765795 GCTGTGAATTTACTCCTATGTAGTATT 57.234 33.333 1.75 0.00 29.86 1.89
844 1445 8.368668 GGCTGTGAATTTACTCCTATGTAGTAT 58.631 37.037 1.75 0.00 29.86 2.12
866 1467 1.945394 ACGTACTATCCTACACGGCTG 59.055 52.381 0.00 0.00 38.67 4.85
867 1468 1.945394 CACGTACTATCCTACACGGCT 59.055 52.381 0.00 0.00 38.67 5.52
870 1471 3.806521 AGCTACACGTACTATCCTACACG 59.193 47.826 0.00 0.00 40.15 4.49
871 1472 4.813161 TGAGCTACACGTACTATCCTACAC 59.187 45.833 0.00 0.00 0.00 2.90
872 1473 5.027293 TGAGCTACACGTACTATCCTACA 57.973 43.478 0.00 0.00 0.00 2.74
874 1475 8.859236 ATATTTGAGCTACACGTACTATCCTA 57.141 34.615 0.00 0.00 0.00 2.94
875 1476 7.447545 TGATATTTGAGCTACACGTACTATCCT 59.552 37.037 0.00 0.00 0.00 3.24
877 1478 9.627395 ATTGATATTTGAGCTACACGTACTATC 57.373 33.333 0.00 0.00 0.00 2.08
878 1479 9.627395 GATTGATATTTGAGCTACACGTACTAT 57.373 33.333 0.00 0.00 0.00 2.12
879 1480 8.626526 TGATTGATATTTGAGCTACACGTACTA 58.373 33.333 0.00 0.00 0.00 1.82
880 1481 7.435488 GTGATTGATATTTGAGCTACACGTACT 59.565 37.037 0.00 0.00 0.00 2.73
882 1483 7.489160 AGTGATTGATATTTGAGCTACACGTA 58.511 34.615 0.00 0.00 0.00 3.57
883 1484 6.341316 AGTGATTGATATTTGAGCTACACGT 58.659 36.000 0.00 0.00 0.00 4.49
885 1486 7.412853 CCAAGTGATTGATATTTGAGCTACAC 58.587 38.462 0.00 0.00 0.00 2.90
886 1487 6.038603 GCCAAGTGATTGATATTTGAGCTACA 59.961 38.462 0.00 0.00 0.00 2.74
888 1489 6.121590 TGCCAAGTGATTGATATTTGAGCTA 58.878 36.000 0.00 0.00 0.00 3.32
889 1490 4.951715 TGCCAAGTGATTGATATTTGAGCT 59.048 37.500 0.00 0.00 0.00 4.09
890 1491 5.252969 TGCCAAGTGATTGATATTTGAGC 57.747 39.130 0.00 0.00 0.00 4.26
892 1493 6.497437 CGATTGCCAAGTGATTGATATTTGA 58.503 36.000 0.00 0.00 0.00 2.69
897 1511 3.277715 TGCGATTGCCAAGTGATTGATA 58.722 40.909 1.50 0.00 41.78 2.15
976 1590 5.045213 TGGTGCTGGGAATCTTAGTCAAATA 60.045 40.000 0.00 0.00 0.00 1.40
1037 1651 4.433283 GCTTTGTTGCATGTGAAAATAGCG 60.433 41.667 0.00 0.00 0.00 4.26
1076 1690 1.753073 GGGCATTTAAGAGCTGCATGT 59.247 47.619 1.02 0.00 37.64 3.21
1077 1691 1.752498 TGGGCATTTAAGAGCTGCATG 59.248 47.619 1.02 0.00 37.64 4.06
1078 1692 2.029623 CTGGGCATTTAAGAGCTGCAT 58.970 47.619 1.02 0.00 37.64 3.96
1079 1693 1.272092 ACTGGGCATTTAAGAGCTGCA 60.272 47.619 1.02 0.00 37.64 4.41
1080 1694 1.467920 ACTGGGCATTTAAGAGCTGC 58.532 50.000 0.00 0.00 35.16 5.25
1081 1695 3.118261 TCCTACTGGGCATTTAAGAGCTG 60.118 47.826 0.00 0.00 34.39 4.24
1082 1696 3.115390 TCCTACTGGGCATTTAAGAGCT 58.885 45.455 0.00 0.00 34.39 4.09
1116 1730 7.201839 GCCTAGCTACTCATACTACTTCAGTTT 60.202 40.741 0.00 0.00 38.80 2.66
1128 1742 2.365617 GTGCTTGGCCTAGCTACTCATA 59.634 50.000 33.91 13.98 41.76 2.15
1130 1744 0.537188 GTGCTTGGCCTAGCTACTCA 59.463 55.000 33.91 15.37 41.76 3.41
1196 1821 5.233988 TCGCCCATATGTTTTTCTTTTTGG 58.766 37.500 1.24 0.00 0.00 3.28
1203 1828 3.115554 GCACATCGCCCATATGTTTTTC 58.884 45.455 1.24 0.00 35.39 2.29
1240 1865 3.153919 CAGTGGCTAGATCTCCTAGGAC 58.846 54.545 7.62 0.00 44.00 3.85
1311 1941 1.982938 CCGAGGTTTCCCGACTCCT 60.983 63.158 0.00 0.00 35.12 3.69
1312 1942 2.577593 CCGAGGTTTCCCGACTCC 59.422 66.667 0.00 0.00 35.12 3.85
1313 1943 2.125633 GCCGAGGTTTCCCGACTC 60.126 66.667 0.00 0.00 35.12 3.36
1314 1944 2.603776 AGCCGAGGTTTCCCGACT 60.604 61.111 0.00 0.00 35.12 4.18
1315 1945 2.125633 GAGCCGAGGTTTCCCGAC 60.126 66.667 0.00 0.00 35.12 4.79
1316 1946 3.755628 CGAGCCGAGGTTTCCCGA 61.756 66.667 0.00 0.00 35.12 5.14
1317 1947 4.814294 CCGAGCCGAGGTTTCCCG 62.814 72.222 0.00 0.00 35.12 5.14
1318 1948 2.294132 CTACCGAGCCGAGGTTTCCC 62.294 65.000 0.55 0.00 42.81 3.97
1346 1976 0.664767 GTCGATCACCGCATAGCTCC 60.665 60.000 0.00 0.00 38.37 4.70
1364 1994 1.518056 TTAACGCTCAGACCGTCGGT 61.518 55.000 18.94 18.94 38.06 4.69
1365 1995 0.387622 TTTAACGCTCAGACCGTCGG 60.388 55.000 10.48 10.48 38.06 4.79
1366 1996 1.123756 GTTTTAACGCTCAGACCGTCG 59.876 52.381 0.00 0.00 38.06 5.12
1367 1997 2.401351 AGTTTTAACGCTCAGACCGTC 58.599 47.619 0.00 0.00 38.06 4.79
1373 2003 6.949449 AGAAAAGAAGAGTTTTAACGCTCAG 58.051 36.000 0.00 0.00 38.12 3.35
1444 2117 4.658901 TCAACCATTCCCTAATCCCTAGAC 59.341 45.833 0.00 0.00 0.00 2.59
1454 2127 2.576191 CCAGGAACTCAACCATTCCCTA 59.424 50.000 0.00 0.00 44.78 3.53
1473 2146 2.021723 GCACTCCAAGACAAACACCCA 61.022 52.381 0.00 0.00 0.00 4.51
1512 2192 2.841442 GGCATAGGAAATAGGCGAGT 57.159 50.000 0.00 0.00 42.15 4.18
1610 2290 3.009033 TCAAGAATTCTCAATGGTCCGGT 59.991 43.478 8.78 0.00 0.00 5.28
1613 2293 6.118170 TCATCTCAAGAATTCTCAATGGTCC 58.882 40.000 8.78 0.00 0.00 4.46
1677 2360 9.290483 CACACACATCTATACTACTACTGTTTG 57.710 37.037 0.00 0.00 0.00 2.93
1679 2362 7.481642 GCACACACATCTATACTACTACTGTT 58.518 38.462 0.00 0.00 0.00 3.16
1765 2451 0.034186 TATTTGGCACCTGCTCCTGG 60.034 55.000 0.00 0.00 41.70 4.45
1772 2458 2.301346 GGACTGGATATTTGGCACCTG 58.699 52.381 0.00 0.00 0.00 4.00
1808 2494 0.871722 TTGTTGCCATCCGAAAGTCG 59.128 50.000 0.00 0.00 40.07 4.18
1815 2501 2.016318 TCATAGCTTTGTTGCCATCCG 58.984 47.619 4.00 0.00 0.00 4.18
1819 2505 5.404968 CGAAAATTTCATAGCTTTGTTGCCA 59.595 36.000 6.53 0.00 0.00 4.92
1822 2508 6.183359 CGTCCGAAAATTTCATAGCTTTGTTG 60.183 38.462 6.53 0.00 0.00 3.33
1823 2509 5.856455 CGTCCGAAAATTTCATAGCTTTGTT 59.144 36.000 6.53 0.00 0.00 2.83
1824 2510 5.390613 CGTCCGAAAATTTCATAGCTTTGT 58.609 37.500 6.53 0.00 0.00 2.83
1892 2578 7.667043 TTAGCGTTTATTAGGGCATAATCTG 57.333 36.000 7.79 0.00 35.63 2.90
1919 2605 4.922103 CGTCTCCTATTTTATTACTCCGCC 59.078 45.833 0.00 0.00 0.00 6.13
1921 2607 6.501781 ACACGTCTCCTATTTTATTACTCCG 58.498 40.000 0.00 0.00 0.00 4.63
1942 2628 2.277084 GACATACATGAACGGGGACAC 58.723 52.381 0.00 0.00 0.00 3.67
1979 2665 2.190981 CATACCCGCGACAAGTACTTC 58.809 52.381 8.23 0.00 0.00 3.01
1982 2668 0.457035 TCCATACCCGCGACAAGTAC 59.543 55.000 8.23 0.00 0.00 2.73
1984 2670 1.405872 TATCCATACCCGCGACAAGT 58.594 50.000 8.23 1.45 0.00 3.16
1986 2672 4.021229 AGATATATCCATACCCGCGACAA 58.979 43.478 8.23 0.00 0.00 3.18
1987 2673 3.628008 AGATATATCCATACCCGCGACA 58.372 45.455 8.23 0.00 0.00 4.35
1991 2677 6.902771 ACATCTAGATATATCCATACCCGC 57.097 41.667 4.54 0.00 0.00 6.13
2018 2726 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2022 2730 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
2023 2731 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
2024 2732 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
2025 2733 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2026 2734 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2027 2735 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2028 2736 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2029 2737 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2030 2738 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2031 2739 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2032 2740 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2033 2741 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2035 2743 7.252543 CGTTTTAAATTACTCGTCGCAGAAATG 60.253 37.037 0.00 0.00 39.69 2.32
2036 2744 6.735063 CGTTTTAAATTACTCGTCGCAGAAAT 59.265 34.615 0.00 0.00 39.69 2.17
2037 2745 6.066410 CGTTTTAAATTACTCGTCGCAGAAA 58.934 36.000 0.00 0.00 39.69 2.52
2040 2748 5.181235 TCGTTTTAAATTACTCGTCGCAG 57.819 39.130 0.00 0.00 0.00 5.18
2042 2750 5.011370 CCTTCGTTTTAAATTACTCGTCGC 58.989 41.667 0.00 0.00 0.00 5.19
2044 2752 6.367149 ACTCCCTTCGTTTTAAATTACTCGTC 59.633 38.462 0.00 0.00 0.00 4.20
2045 2753 6.226052 ACTCCCTTCGTTTTAAATTACTCGT 58.774 36.000 0.00 0.00 0.00 4.18
2052 2760 9.591792 GTGTATAGTACTCCCTTCGTTTTAAAT 57.408 33.333 0.00 0.00 0.00 1.40
2053 2761 8.584157 TGTGTATAGTACTCCCTTCGTTTTAAA 58.416 33.333 0.00 0.00 0.00 1.52
2054 2762 8.121305 TGTGTATAGTACTCCCTTCGTTTTAA 57.879 34.615 0.00 0.00 0.00 1.52
2056 2764 6.350780 CCTGTGTATAGTACTCCCTTCGTTTT 60.351 42.308 0.00 0.00 0.00 2.43
2062 2803 5.602978 CCAATCCTGTGTATAGTACTCCCTT 59.397 44.000 0.00 0.00 0.00 3.95
2071 2812 5.104527 TCAAACCCTCCAATCCTGTGTATAG 60.105 44.000 0.00 0.00 0.00 1.31
2075 2816 1.780309 TCAAACCCTCCAATCCTGTGT 59.220 47.619 0.00 0.00 0.00 3.72
2086 2827 2.555199 CATCTCCATCGTCAAACCCTC 58.445 52.381 0.00 0.00 0.00 4.30
2089 2830 2.403252 ACCATCTCCATCGTCAAACC 57.597 50.000 0.00 0.00 0.00 3.27
2096 2837 5.412594 TGAAAGAAAGAAACCATCTCCATCG 59.587 40.000 0.00 0.00 37.42 3.84
2166 2910 1.632018 CCACGGGCCCCTATCTGAAA 61.632 60.000 18.66 0.00 0.00 2.69
2173 2917 4.660611 TTGGTCCACGGGCCCCTA 62.661 66.667 18.66 0.00 0.00 3.53
2192 2936 2.359900 AGTAGCACAAACTGGCATAGC 58.640 47.619 0.00 0.00 0.00 2.97
2193 2937 4.759782 ACTAGTAGCACAAACTGGCATAG 58.240 43.478 0.00 0.00 0.00 2.23
2194 2938 4.819105 ACTAGTAGCACAAACTGGCATA 57.181 40.909 0.00 0.00 0.00 3.14
2195 2939 3.703001 ACTAGTAGCACAAACTGGCAT 57.297 42.857 0.00 0.00 0.00 4.40
2196 2940 3.576982 ACTACTAGTAGCACAAACTGGCA 59.423 43.478 26.54 0.00 36.66 4.92
2197 2941 4.189639 ACTACTAGTAGCACAAACTGGC 57.810 45.455 26.54 0.00 36.66 4.85
2242 2986 7.930865 AGCAAAGCAACCTGAATTGTTTTAATA 59.069 29.630 0.90 0.00 39.92 0.98
2247 2991 4.141233 AGCAAAGCAACCTGAATTGTTT 57.859 36.364 0.00 0.00 34.85 2.83
2250 2994 4.448732 GGTTAAGCAAAGCAACCTGAATTG 59.551 41.667 0.00 0.00 38.93 2.32
2255 2999 2.545742 GGTGGTTAAGCAAAGCAACCTG 60.546 50.000 9.30 0.00 45.64 4.00
2277 3021 8.849168 TCATCCATGTTTAATGTACATTCCATC 58.151 33.333 24.00 13.36 34.11 3.51
2299 3043 1.001378 ACCAAGTTTGCACGCTTCATC 60.001 47.619 0.00 0.00 0.00 2.92
2301 3045 0.380378 GACCAAGTTTGCACGCTTCA 59.620 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.