AutoCloner

Multiple sequence alignment - TraesCS3A01G239600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G239600	chr3A	100.000	2594	0	0	1	2594	449657928	449655335	0.000000e+00	4791.0
1	TraesCS3A01G239600	chr3A	94.017	936	48	4	1	933	522237342	522236412	0.000000e+00	1411.0
2	TraesCS3A01G239600	chr3A	89.655	435	43	2	1706	2139	449514077	449513644	1.050000e-153	553.0
3	TraesCS3A01G239600	chr3A	91.582	392	28	5	2122	2510	449513632	449513243	1.060000e-148	536.0
4	TraesCS3A01G239600	chr3A	85.329	334	41	7	603	932	522237321	522237650	3.200000e-89	339.0
5	TraesCS3A01G239600	chr3A	82.985	335	50	6	603	933	449657907	449658238	1.950000e-76	296.0
6	TraesCS3A01G239600	chr3D	95.011	1343	38	6	933	2265	332327075	332325752	0.000000e+00	2082.0
7	TraesCS3A01G239600	chr3D	86.134	952	100	18	4	928	563443188	563444134	0.000000e+00	998.0
8	TraesCS3A01G239600	chr3D	87.232	885	91	14	6	871	182319648	182318767	0.000000e+00	989.0
9	TraesCS3A01G239600	chr3D	89.219	807	60	7	1706	2510	332169727	332168946	0.000000e+00	983.0
10	TraesCS3A01G239600	chr3D	85.731	834	85	25	1706	2510	332237370	332236542	0.000000e+00	850.0
11	TraesCS3A01G239600	chr3D	94.444	270	14	1	2263	2531	332325623	332325354	5.160000e-112	414.0
12	TraesCS3A01G239600	chr3B	94.938	1284	38	8	933	2210	431517324	431516062	0.000000e+00	1986.0
13	TraesCS3A01G239600	chr3B	90.805	435	38	2	1706	2139	431259893	431259460	4.810000e-162	580.0
14	TraesCS3A01G239600	chr3B	91.304	391	29	5	2122	2510	431259448	431259061	1.770000e-146	529.0
15	TraesCS3A01G239600	chr3B	94.052	269	16	0	2263	2531	431515929	431515661	2.400000e-110	409.0
16	TraesCS3A01G239600	chr6A	97.970	936	15	2	1	932	73381985	73381050	0.000000e+00	1620.0
17	TraesCS3A01G239600	chr6A	97.674	903	16	3	4	901	597332384	597331482	0.000000e+00	1546.0
18	TraesCS3A01G239600	chr6A	84.179	335	46	6	603	933	597332366	597332697	4.170000e-83	318.0
19	TraesCS3A01G239600	chr2A	97.545	937	18	3	1	933	187948660	187949595	0.000000e+00	1598.0
20	TraesCS3A01G239600	chr2A	80.392	612	99	17	994	1588	764913447	764914054	1.830000e-121	446.0
21	TraesCS3A01G239600	chr2A	84.132	334	46	6	603	932	187948681	187948351	1.500000e-82	316.0
22	TraesCS3A01G239600	chr2A	96.875	32	1	0	2563	2594	348862690	348862659	1.000000e-03	54.7
23	TraesCS3A01G239600	chr5A	95.096	938	37	6	1	932	413230383	413229449	0.000000e+00	1469.0
24	TraesCS3A01G239600	chr5A	80.096	623	104	16	996	1601	4080757	4081376	1.830000e-121	446.0
25	TraesCS3A01G239600	chr5A	94.444	36	2	0	2556	2591	218655504	218655469	3.610000e-04	56.5
26	TraesCS3A01G239600	chr7D	86.737	950	93	16	4	930	147193453	147192514	0.000000e+00	1026.0
27	TraesCS3A01G239600	chr7D	84.516	465	71	1	1124	1588	376941261	376941724	2.350000e-125	459.0
28	TraesCS3A01G239600	chr7A	91.978	723	49	6	214	932	40896843	40896126	0.000000e+00	1005.0
29	TraesCS3A01G239600	chr7A	85.376	465	68	0	1124	1588	424534831	424535295	1.400000e-132	483.0
30	TraesCS3A01G239600	chr2D	87.018	855	75	15	5	834	524928319	524929162	0.000000e+00	931.0
31	TraesCS3A01G239600	chr2D	94.286	35	2	0	2557	2591	83193130	83193164	1.000000e-03	54.7
32	TraesCS3A01G239600	chr7B	84.120	466	72	2	1124	1588	372008285	372008749	1.420000e-122	449.0
33	TraesCS3A01G239600	chr4A	80.227	617	103	12	1001	1601	17887880	17888493	1.830000e-121	446.0
34	TraesCS3A01G239600	chr4A	100.000	31	0	0	2562	2592	340281143	340281113	1.000000e-04	58.4
35	TraesCS3A01G239600	chr2B	80.366	601	92	20	1007	1588	798702764	798702171	1.430000e-117	433.0
36	TraesCS3A01G239600	chr4D	82.684	462	60	11	490	932	12352791	12353251	2.420000e-105	392.0
37	TraesCS3A01G239600	chr5D	100.000	32	0	0	2560	2591	166776503	166776472	2.790000e-05	60.2
38	TraesCS3A01G239600	chr5D	100.000	29	0	0	2563	2591	422706746	422706718	1.000000e-03	54.7
39	TraesCS3A01G239600	chr5B	100.000	32	0	0	2560	2591	178409347	178409316	2.790000e-05	60.2
40	TraesCS3A01G239600	chr6D	100.000	29	0	0	2563	2591	255476449	255476421	1.000000e-03	54.7
41	TraesCS3A01G239600	chr1D	100.000	29	0	0	2563	2591	228520669	228520641	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G239600	chr3A	449655335	449657928	2593	True	4791.0	4791	100.0000	1	2594	1	chr3A.!!$R1	2593
1	TraesCS3A01G239600	chr3A	522236412	522237342	930	True	1411.0	1411	94.0170	1	933	1	chr3A.!!$R2	932
2	TraesCS3A01G239600	chr3A	449513243	449514077	834	True	544.5	553	90.6185	1706	2510	2	chr3A.!!$R3	804
3	TraesCS3A01G239600	chr3D	332325354	332327075	1721	True	1248.0	2082	94.7275	933	2531	2	chr3D.!!$R4	1598
4	TraesCS3A01G239600	chr3D	563443188	563444134	946	False	998.0	998	86.1340	4	928	1	chr3D.!!$F1	924
5	TraesCS3A01G239600	chr3D	182318767	182319648	881	True	989.0	989	87.2320	6	871	1	chr3D.!!$R1	865
6	TraesCS3A01G239600	chr3D	332168946	332169727	781	True	983.0	983	89.2190	1706	2510	1	chr3D.!!$R2	804
7	TraesCS3A01G239600	chr3D	332236542	332237370	828	True	850.0	850	85.7310	1706	2510	1	chr3D.!!$R3	804
8	TraesCS3A01G239600	chr3B	431515661	431517324	1663	True	1197.5	1986	94.4950	933	2531	2	chr3B.!!$R2	1598
9	TraesCS3A01G239600	chr3B	431259061	431259893	832	True	554.5	580	91.0545	1706	2510	2	chr3B.!!$R1	804
10	TraesCS3A01G239600	chr6A	73381050	73381985	935	True	1620.0	1620	97.9700	1	932	1	chr6A.!!$R1	931
11	TraesCS3A01G239600	chr6A	597331482	597332384	902	True	1546.0	1546	97.6740	4	901	1	chr6A.!!$R2	897
12	TraesCS3A01G239600	chr2A	187948660	187949595	935	False	1598.0	1598	97.5450	1	933	1	chr2A.!!$F1	932
13	TraesCS3A01G239600	chr2A	764913447	764914054	607	False	446.0	446	80.3920	994	1588	1	chr2A.!!$F2	594
14	TraesCS3A01G239600	chr5A	413229449	413230383	934	True	1469.0	1469	95.0960	1	932	1	chr5A.!!$R2	931
15	TraesCS3A01G239600	chr5A	4080757	4081376	619	False	446.0	446	80.0960	996	1601	1	chr5A.!!$F1	605
16	TraesCS3A01G239600	chr7D	147192514	147193453	939	True	1026.0	1026	86.7370	4	930	1	chr7D.!!$R1	926
17	TraesCS3A01G239600	chr7A	40896126	40896843	717	True	1005.0	1005	91.9780	214	932	1	chr7A.!!$R1	718
18	TraesCS3A01G239600	chr2D	524928319	524929162	843	False	931.0	931	87.0180	5	834	1	chr2D.!!$F2	829
19	TraesCS3A01G239600	chr4A	17887880	17888493	613	False	446.0	446	80.2270	1001	1601	1	chr4A.!!$F1	600
20	TraesCS3A01G239600	chr2B	798702171	798702764	593	True	433.0	433	80.3660	1007	1588	1	chr2B.!!$R1	581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
735	772	0.536006	AGTTCCAGTTGGCTGCTGAC	60.536	55.0	0.0	0.0	41.26	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2542	2816	1.016627	TTATGAGGTCGGACCGTACG	58.983	55.0	20.87	8.69	44.9	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
698	730	5.279657	GGGAAAATCCAGCTCAATTGAAGTT	60.280	40.000	9.88	0.00	38.64	2.66
699	731	6.226052	GGAAAATCCAGCTCAATTGAAGTTT	58.774	36.000	9.88	5.95	36.28	2.66
700	732	6.367149	GGAAAATCCAGCTCAATTGAAGTTTC	59.633	38.462	16.19	16.19	36.28	2.78
735	772	0.536006	AGTTCCAGTTGGCTGCTGAC	60.536	55.000	0.00	0.00	41.26	3.51
774	820	2.805671	CCGTGATGCACTTACAAACTGA	59.194	45.455	0.00	0.00	31.34	3.41
842	888	4.020485	AGACCTAGTTGCAACGAATTACCT	60.020	41.667	23.21	12.67	0.00	3.08
843	889	4.648651	ACCTAGTTGCAACGAATTACCTT	58.351	39.130	23.21	5.71	0.00	3.50
884	930	5.154222	GCAACAAATCTGTAAAGTAGGTGC	58.846	41.667	0.00	0.00	33.45	5.01
1110	1157	2.130426	GCTCCAGGAGATCCGCTCA	61.130	63.158	21.89	0.00	45.81	4.26
1326	1385	4.180946	CAGGAGGACGTCGAGCGG	62.181	72.222	9.92	0.00	46.52	5.52
1518	1577	1.310904	CCTACTGCCTCTCCTACGAC	58.689	60.000	0.00	0.00	0.00	4.34
1675	1738	9.790389	ACTATTGTGTTTAGATCTAGTTCTTCG	57.210	33.333	8.59	0.00	0.00	3.79
1701	1764	2.603075	AATGCTAGGCAAGGGTTTGA	57.397	45.000	0.00	0.00	43.62	2.69
1713	1776	3.064900	AGGGTTTGAGAGTGATTCTGC	57.935	47.619	0.00	0.00	35.87	4.26
1744	1807	6.666678	AGAATTAGACATTGGTGGTGATGAT	58.333	36.000	0.00	0.00	0.00	2.45
1791	1862	2.746277	GCCTACAACTGGGTGCCG	60.746	66.667	0.00	0.00	0.00	5.69
1841	1913	5.476752	AAACTCTCTGCGAAATATTCTGC	57.523	39.130	5.22	5.22	0.00	4.26
1843	1915	3.133721	ACTCTCTGCGAAATATTCTGCCT	59.866	43.478	8.81	0.00	0.00	4.75
1853	1925	6.671190	CGAAATATTCTGCCTCATTATGCAA	58.329	36.000	0.00	0.00	36.98	4.08
1994	2066	3.541996	TTCGATCTGCCTAGCATTTGA	57.458	42.857	0.00	0.00	38.13	2.69
2070	2153	5.899299	AGCATTAATCCTTTTGTGCTGATC	58.101	37.500	0.00	0.00	40.99	2.92
2071	2154	4.736793	GCATTAATCCTTTTGTGCTGATCG	59.263	41.667	0.00	0.00	0.00	3.69
2072	2155	5.449041	GCATTAATCCTTTTGTGCTGATCGA	60.449	40.000	0.00	0.00	0.00	3.59
2073	2156	6.732154	CATTAATCCTTTTGTGCTGATCGAT	58.268	36.000	0.00	0.00	0.00	3.59
2074	2157	7.520453	GCATTAATCCTTTTGTGCTGATCGATA	60.520	37.037	0.00	0.00	0.00	2.92
2075	2158	5.741388	AATCCTTTTGTGCTGATCGATAC	57.259	39.130	0.00	0.00	0.00	2.24
2076	2159	4.471904	TCCTTTTGTGCTGATCGATACT	57.528	40.909	0.00	0.00	0.00	2.12
2077	2160	4.183865	TCCTTTTGTGCTGATCGATACTG	58.816	43.478	0.00	0.00	0.00	2.74
2078	2161	3.935203	CCTTTTGTGCTGATCGATACTGT	59.065	43.478	0.00	0.00	0.00	3.55
2079	2162	4.393062	CCTTTTGTGCTGATCGATACTGTT	59.607	41.667	0.00	0.00	0.00	3.16
2080	2163	5.106555	CCTTTTGTGCTGATCGATACTGTTT	60.107	40.000	0.00	0.00	0.00	2.83
2194	2335	3.343617	TGGGATGTTTCAGATTTCCGAC	58.656	45.455	0.00	0.00	0.00	4.79
2196	2337	3.756434	GGGATGTTTCAGATTTCCGACAA	59.244	43.478	0.00	0.00	0.00	3.18
2265	2537	9.647797	TCGTAGATAGAATTTTGCTCTGTTTAA	57.352	29.630	0.00	0.00	0.00	1.52
2553	2827	4.764336	CGCTTGCGTACGGTCCGA	62.764	66.667	20.51	0.00	0.00	4.55
2554	2828	3.177249	GCTTGCGTACGGTCCGAC	61.177	66.667	20.51	10.82	0.00	4.79
2555	2829	2.505557	CTTGCGTACGGTCCGACC	60.506	66.667	20.51	7.59	34.05	4.79
2556	2830	2.985282	TTGCGTACGGTCCGACCT	60.985	61.111	20.51	0.00	35.66	3.85
2557	2831	2.862347	CTTGCGTACGGTCCGACCTC	62.862	65.000	20.51	3.11	35.66	3.85
2558	2832	3.434319	GCGTACGGTCCGACCTCA	61.434	66.667	20.51	0.01	35.66	3.86
2559	2833	2.768492	GCGTACGGTCCGACCTCAT	61.768	63.158	20.51	3.81	35.66	2.90
2560	2834	1.439353	GCGTACGGTCCGACCTCATA	61.439	60.000	20.51	2.87	35.66	2.15
2561	2835	1.016627	CGTACGGTCCGACCTCATAA	58.983	55.000	20.51	0.00	35.66	1.90
2562	2836	1.401552	CGTACGGTCCGACCTCATAAA	59.598	52.381	20.51	0.00	35.66	1.40
2563	2837	2.033801	CGTACGGTCCGACCTCATAAAT	59.966	50.000	20.51	0.00	35.66	1.40
2564	2838	3.250762	CGTACGGTCCGACCTCATAAATA	59.749	47.826	20.51	0.00	35.66	1.40
2565	2839	4.261155	CGTACGGTCCGACCTCATAAATAA	60.261	45.833	20.51	0.00	35.66	1.40
2566	2840	4.050852	ACGGTCCGACCTCATAAATAAC	57.949	45.455	20.51	0.00	35.66	1.89
2567	2841	3.448301	ACGGTCCGACCTCATAAATAACA	59.552	43.478	20.51	0.00	35.66	2.41
2568	2842	4.100498	ACGGTCCGACCTCATAAATAACAT	59.900	41.667	20.51	0.00	35.66	2.71
2569	2843	5.302568	ACGGTCCGACCTCATAAATAACATA	59.697	40.000	20.51	0.00	35.66	2.29
2570	2844	6.183360	ACGGTCCGACCTCATAAATAACATAA	60.183	38.462	20.51	0.00	35.66	1.90
2571	2845	6.702723	CGGTCCGACCTCATAAATAACATAAA	59.297	38.462	15.70	0.00	35.66	1.40
2572	2846	7.386848	CGGTCCGACCTCATAAATAACATAAAT	59.613	37.037	15.70	0.00	35.66	1.40
2573	2847	9.715121	GGTCCGACCTCATAAATAACATAAATA	57.285	33.333	10.59	0.00	34.73	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
407	411	6.265196	TCATTATAATGTGATCCAAACCAGCC	59.735	38.462	21.89	0.00	37.65	4.85
698	730	6.768483	TGGAACTGTCAATATCTCACAAGAA	58.232	36.000	0.00	0.00	34.49	2.52
699	731	6.014242	ACTGGAACTGTCAATATCTCACAAGA	60.014	38.462	0.00	0.00	34.81	3.02
700	732	6.169094	ACTGGAACTGTCAATATCTCACAAG	58.831	40.000	0.00	0.00	34.81	3.16
774	820	4.473444	ACATGATTTCTGACAAGTGGGTT	58.527	39.130	0.00	0.00	0.00	4.11
884	930	3.281727	TGGGGCTAGTTTTGCATAGAG	57.718	47.619	0.00	0.00	0.00	2.43
901	947	2.223947	GCACAAACCACCTACTTTTGGG	60.224	50.000	0.00	0.00	36.82	4.12
960	1006	3.785859	TTCTGGGCTAGCTGGCGG	61.786	66.667	16.50	8.80	42.84	6.13
961	1007	2.512515	GTTCTGGGCTAGCTGGCG	60.513	66.667	16.50	2.32	42.84	5.69
962	1008	2.124529	GGTTCTGGGCTAGCTGGC	60.125	66.667	14.65	14.65	40.96	4.85
963	1009	2.187946	CGGTTCTGGGCTAGCTGG	59.812	66.667	15.72	5.29	0.00	4.85
964	1010	1.142748	CTCGGTTCTGGGCTAGCTG	59.857	63.158	15.72	5.66	0.00	4.24
965	1011	2.060980	CCTCGGTTCTGGGCTAGCT	61.061	63.158	15.72	0.00	0.00	3.32
966	1012	2.022240	CTCCTCGGTTCTGGGCTAGC	62.022	65.000	6.04	6.04	0.00	3.42
1110	1157	4.719106	ACGAGGTCGCCGAGGACT	62.719	66.667	0.00	0.00	44.43	3.85
1326	1385	2.807045	CTGTGGTCGTCGCTGAGC	60.807	66.667	0.00	0.00	36.91	4.26
1518	1577	0.108186	TGCAGGCGTACTTGATCTGG	60.108	55.000	0.00	0.00	0.00	3.86
1675	1738	3.954258	ACCCTTGCCTAGCATTATGAAAC	59.046	43.478	0.00	0.00	38.76	2.78
1677	1740	3.951563	ACCCTTGCCTAGCATTATGAA	57.048	42.857	0.00	0.00	38.76	2.57
1701	1764	2.762887	TCTTCCATCGCAGAATCACTCT	59.237	45.455	0.00	0.00	43.58	3.24
1713	1776	5.008019	CCACCAATGTCTAATTCTTCCATCG	59.992	44.000	0.00	0.00	0.00	3.84
1744	1807	4.908601	TTCCCTGCTCTGAAGTTAATCA	57.091	40.909	0.00	0.00	0.00	2.57
1791	1862	1.270550	CACAAAAGGGTCCATGCTCAC	59.729	52.381	0.00	0.00	0.00	3.51
2070	2153	6.090763	TGAGCAGAATACACAAAACAGTATCG	59.909	38.462	0.00	0.00	30.96	2.92
2071	2154	7.364522	TGAGCAGAATACACAAAACAGTATC	57.635	36.000	0.00	0.00	30.96	2.24
2072	2155	7.445402	AGTTGAGCAGAATACACAAAACAGTAT	59.555	33.333	0.00	0.00	32.58	2.12
2073	2156	6.765989	AGTTGAGCAGAATACACAAAACAGTA	59.234	34.615	0.00	0.00	0.00	2.74
2074	2157	5.590259	AGTTGAGCAGAATACACAAAACAGT	59.410	36.000	0.00	0.00	0.00	3.55
2075	2158	6.064846	AGTTGAGCAGAATACACAAAACAG	57.935	37.500	0.00	0.00	0.00	3.16
2076	2159	7.228507	ACATAGTTGAGCAGAATACACAAAACA	59.771	33.333	0.00	0.00	0.00	2.83
2077	2160	7.584987	ACATAGTTGAGCAGAATACACAAAAC	58.415	34.615	0.00	0.00	0.00	2.43
2078	2161	7.744087	ACATAGTTGAGCAGAATACACAAAA	57.256	32.000	0.00	0.00	0.00	2.44
2079	2162	7.744087	AACATAGTTGAGCAGAATACACAAA	57.256	32.000	0.00	0.00	0.00	2.83
2080	2163	7.228507	ACAAACATAGTTGAGCAGAATACACAA	59.771	33.333	0.00	0.00	32.59	3.33
2194	2335	5.684626	GTCAAACTTCAGAGCAAATGACTTG	59.315	40.000	0.00	0.00	38.15	3.16
2196	2337	4.883585	TGTCAAACTTCAGAGCAAATGACT	59.116	37.500	0.00	0.00	37.43	3.41
2515	2789	4.377708	GCGGGGCTGCCCTTTTTG	62.378	66.667	34.99	20.53	44.66	2.44
2536	2810	4.764336	TCGGACCGTACGCAAGCG	62.764	66.667	14.79	13.50	46.03	4.68
2537	2811	3.177249	GTCGGACCGTACGCAAGC	61.177	66.667	14.79	0.00	45.62	4.01
2538	2812	2.862347	GAGGTCGGACCGTACGCAAG	62.862	65.000	20.87	0.00	44.90	4.01
2539	2813	2.981560	GAGGTCGGACCGTACGCAA	61.982	63.158	20.87	0.00	44.90	4.85
2540	2814	3.434319	GAGGTCGGACCGTACGCA	61.434	66.667	20.87	0.00	44.90	5.24
2541	2815	1.439353	TATGAGGTCGGACCGTACGC	61.439	60.000	20.87	10.26	44.90	4.42
2542	2816	1.016627	TTATGAGGTCGGACCGTACG	58.983	55.000	20.87	8.69	44.90	3.67
2543	2817	3.722728	ATTTATGAGGTCGGACCGTAC	57.277	47.619	20.87	16.06	44.90	3.67
2544	2818	4.644234	TGTTATTTATGAGGTCGGACCGTA	59.356	41.667	20.87	14.25	44.90	4.02
2545	2819	3.448301	TGTTATTTATGAGGTCGGACCGT	59.552	43.478	20.87	13.52	44.90	4.83
2546	2820	4.049546	TGTTATTTATGAGGTCGGACCG	57.950	45.455	20.87	7.84	44.90	4.79
2547	2821	8.617290	ATTTATGTTATTTATGAGGTCGGACC	57.383	34.615	19.61	19.61	38.99	4.46

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.