Multiple sequence alignment - TraesCS3A01G238700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G238700 chr3A 100.000 6039 0 0 997 7035 446474889 446480927 0.000000e+00 11153.0
1 TraesCS3A01G238700 chr3A 99.485 1358 6 1 3805 5161 46613088 46614445 0.000000e+00 2468.0
2 TraesCS3A01G238700 chr3A 100.000 588 0 0 1 588 446473893 446474480 0.000000e+00 1086.0
3 TraesCS3A01G238700 chr3A 86.076 79 10 1 6854 6932 727646649 727646726 4.520000e-12 84.2
4 TraesCS3A01G238700 chr3A 95.349 43 2 0 6346 6388 650015656 650015614 1.270000e-07 69.4
5 TraesCS3A01G238700 chr3A 95.122 41 2 0 6346 6386 695639244 695639284 1.640000e-06 65.8
6 TraesCS3A01G238700 chr3A 95.122 41 2 0 6348 6388 728317068 728317028 1.640000e-06 65.8
7 TraesCS3A01G238700 chr3B 95.781 2797 83 14 997 3784 429271881 429274651 0.000000e+00 4479.0
8 TraesCS3A01G238700 chr3B 99.558 1358 4 2 3805 5160 695916395 695915038 0.000000e+00 2473.0
9 TraesCS3A01G238700 chr3B 90.273 1573 78 31 5159 6681 429274670 429276217 0.000000e+00 1988.0
10 TraesCS3A01G238700 chr3B 95.946 296 6 3 296 588 429271470 429271762 6.390000e-130 475.0
11 TraesCS3A01G238700 chr3B 97.436 39 1 0 6348 6386 201538379 201538417 4.550000e-07 67.6
12 TraesCS3A01G238700 chr3D 95.681 1644 43 10 2142 3784 330639362 330640978 0.000000e+00 2617.0
13 TraesCS3A01G238700 chr3D 99.412 1361 7 1 3805 5164 413767445 413766085 0.000000e+00 2468.0
14 TraesCS3A01G238700 chr3D 95.443 1141 41 9 997 2134 330637772 330638904 0.000000e+00 1808.0
15 TraesCS3A01G238700 chr3D 94.519 675 29 2 5159 5828 330640997 330641668 0.000000e+00 1035.0
16 TraesCS3A01G238700 chr3D 92.623 488 21 8 5862 6345 330642022 330642498 0.000000e+00 688.0
17 TraesCS3A01G238700 chr3D 95.667 300 11 1 291 588 330637054 330637353 1.370000e-131 481.0
18 TraesCS3A01G238700 chr3D 86.111 360 32 8 6346 6692 330642456 330642810 8.620000e-99 372.0
19 TraesCS3A01G238700 chr6B 99.558 1356 5 1 3805 5159 410233891 410235246 0.000000e+00 2470.0
20 TraesCS3A01G238700 chr6B 99.485 1359 4 3 3805 5161 692136890 692135533 0.000000e+00 2468.0
21 TraesCS3A01G238700 chr4B 99.557 1355 5 1 3808 5161 5374215 5372861 0.000000e+00 2468.0
22 TraesCS3A01G238700 chr4B 99.485 1358 6 1 3805 5161 322671491 322670134 0.000000e+00 2468.0
23 TraesCS3A01G238700 chr5A 99.340 1363 6 2 3805 5166 648816971 648815611 0.000000e+00 2464.0
24 TraesCS3A01G238700 chr5A 95.122 41 2 0 6346 6386 66874552 66874512 1.640000e-06 65.8
25 TraesCS3A01G238700 chr4A 99.411 1358 6 2 3805 5161 713740819 713742175 0.000000e+00 2462.0
26 TraesCS3A01G238700 chr4A 84.783 92 12 2 6840 6931 595381954 595382043 2.700000e-14 91.6
27 TraesCS3A01G238700 chr6A 98.921 278 3 0 1 278 486201252 486200975 1.360000e-136 497.0
28 TraesCS3A01G238700 chr6A 98.571 280 4 0 1 280 15225356 15225077 4.900000e-136 496.0
29 TraesCS3A01G238700 chr6A 98.214 280 5 0 1 280 15004942 15004663 2.280000e-134 490.0
30 TraesCS3A01G238700 chr6A 98.214 280 5 0 1 280 15116422 15116143 2.280000e-134 490.0
31 TraesCS3A01G238700 chr7B 98.571 280 4 0 1 280 189384884 189384605 4.900000e-136 496.0
32 TraesCS3A01G238700 chr7B 84.706 85 4 5 6847 6931 63139950 63139875 7.570000e-10 76.8
33 TraesCS3A01G238700 chr7A 98.917 277 3 0 1 277 48651499 48651775 4.900000e-136 496.0
34 TraesCS3A01G238700 chr7A 98.571 280 4 0 1 280 719989060 719989339 4.900000e-136 496.0
35 TraesCS3A01G238700 chr2A 98.561 278 4 0 1 278 7682761 7683038 6.340000e-135 492.0
36 TraesCS3A01G238700 chr2A 98.561 278 4 0 1 278 47893547 47893824 6.340000e-135 492.0
37 TraesCS3A01G238700 chr2A 97.436 39 1 0 6348 6386 439179885 439179923 4.550000e-07 67.6
38 TraesCS3A01G238700 chr2A 95.122 41 2 0 6348 6388 112409822 112409862 1.640000e-06 65.8
39 TraesCS3A01G238700 chr7D 95.122 41 2 0 6348 6388 231555567 231555527 1.640000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G238700 chr3A 446473893 446480927 7034 False 6119.500000 11153 100.000000 1 7035 2 chr3A.!!$F4 7034
1 TraesCS3A01G238700 chr3A 46613088 46614445 1357 False 2468.000000 2468 99.485000 3805 5161 1 chr3A.!!$F1 1356
2 TraesCS3A01G238700 chr3B 695915038 695916395 1357 True 2473.000000 2473 99.558000 3805 5160 1 chr3B.!!$R1 1355
3 TraesCS3A01G238700 chr3B 429271470 429276217 4747 False 2314.000000 4479 94.000000 296 6681 3 chr3B.!!$F2 6385
4 TraesCS3A01G238700 chr3D 413766085 413767445 1360 True 2468.000000 2468 99.412000 3805 5164 1 chr3D.!!$R1 1359
5 TraesCS3A01G238700 chr3D 330637054 330642810 5756 False 1166.833333 2617 93.340667 291 6692 6 chr3D.!!$F1 6401
6 TraesCS3A01G238700 chr6B 410233891 410235246 1355 False 2470.000000 2470 99.558000 3805 5159 1 chr6B.!!$F1 1354
7 TraesCS3A01G238700 chr6B 692135533 692136890 1357 True 2468.000000 2468 99.485000 3805 5161 1 chr6B.!!$R1 1356
8 TraesCS3A01G238700 chr4B 5372861 5374215 1354 True 2468.000000 2468 99.557000 3808 5161 1 chr4B.!!$R1 1353
9 TraesCS3A01G238700 chr4B 322670134 322671491 1357 True 2468.000000 2468 99.485000 3805 5161 1 chr4B.!!$R2 1356
10 TraesCS3A01G238700 chr5A 648815611 648816971 1360 True 2464.000000 2464 99.340000 3805 5166 1 chr5A.!!$R2 1361
11 TraesCS3A01G238700 chr4A 713740819 713742175 1356 False 2462.000000 2462 99.411000 3805 5161 1 chr4A.!!$F2 1356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.171903 GCACGGGCGTTCTTCTAGTA 59.828 55.000 0.00 0.00 0.00 1.82 F
360 361 0.603975 GATCACAATAGCGCCCCTCC 60.604 60.000 2.29 0.00 0.00 4.30 F
1725 1742 0.682852 AAACCTCGGATCCACAACGA 59.317 50.000 13.41 1.48 35.14 3.85 F
3149 3623 0.800683 CGGTTCGTCGCAAGCATCTA 60.801 55.000 0.00 0.00 37.18 1.98 F
3597 4072 2.961741 TGTCCATGAGCCAGAGATACTC 59.038 50.000 0.00 0.00 0.00 2.59 F
5357 5835 2.674852 TGCGTTCATTCAGCTCATCTTC 59.325 45.455 0.00 0.00 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1526 0.472471 TCCCGGTTCAGTTCAAGCTT 59.528 50.000 0.00 0.00 0.00 3.74 R
2042 2061 1.065851 GTCTCCTAGGCTTAGTGACGC 59.934 57.143 2.96 0.00 0.00 5.19 R
3597 4072 1.340248 AGGTAGACACTGTGGTCAACG 59.660 52.381 13.09 0.00 40.29 4.10 R
4670 5147 1.136356 CGCGCCATACAACATTGCA 59.864 52.632 0.00 0.00 0.00 4.08 R
5379 5857 1.608109 AGAATTGTGCACAATGACGCA 59.392 42.857 38.30 16.19 45.06 5.24 R
6324 7170 0.028505 CGATTCCCGCTTTCATGCAG 59.971 55.000 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.585471 CCATATTTCATAGGGTGCTATCATTT 57.415 34.615 0.00 0.00 32.24 2.32
37 38 9.028284 CCATATTTCATAGGGTGCTATCATTTT 57.972 33.333 0.00 0.00 32.24 1.82
40 41 7.953005 TTTCATAGGGTGCTATCATTTTTCA 57.047 32.000 0.00 0.00 0.00 2.69
41 42 8.537728 TTTCATAGGGTGCTATCATTTTTCAT 57.462 30.769 0.00 0.00 0.00 2.57
42 43 7.514784 TCATAGGGTGCTATCATTTTTCATG 57.485 36.000 0.00 0.00 0.00 3.07
43 44 7.062322 TCATAGGGTGCTATCATTTTTCATGT 58.938 34.615 0.00 0.00 0.00 3.21
44 45 7.560991 TCATAGGGTGCTATCATTTTTCATGTT 59.439 33.333 0.00 0.00 0.00 2.71
45 46 6.610075 AGGGTGCTATCATTTTTCATGTTT 57.390 33.333 0.00 0.00 0.00 2.83
46 47 6.400568 AGGGTGCTATCATTTTTCATGTTTG 58.599 36.000 0.00 0.00 0.00 2.93
47 48 6.014327 AGGGTGCTATCATTTTTCATGTTTGT 60.014 34.615 0.00 0.00 0.00 2.83
48 49 7.178274 AGGGTGCTATCATTTTTCATGTTTGTA 59.822 33.333 0.00 0.00 0.00 2.41
49 50 7.489113 GGGTGCTATCATTTTTCATGTTTGTAG 59.511 37.037 0.00 0.00 0.00 2.74
50 51 8.028938 GGTGCTATCATTTTTCATGTTTGTAGT 58.971 33.333 0.00 0.00 0.00 2.73
51 52 9.410556 GTGCTATCATTTTTCATGTTTGTAGTT 57.589 29.630 0.00 0.00 0.00 2.24
52 53 9.409312 TGCTATCATTTTTCATGTTTGTAGTTG 57.591 29.630 0.00 0.00 0.00 3.16
53 54 9.410556 GCTATCATTTTTCATGTTTGTAGTTGT 57.589 29.630 0.00 0.00 0.00 3.32
248 249 6.930731 TGAATTCTTAAAGTTAATGTGGCCC 58.069 36.000 7.05 0.00 0.00 5.80
249 250 5.932619 ATTCTTAAAGTTAATGTGGCCCC 57.067 39.130 0.00 0.00 0.00 5.80
250 251 4.390129 TCTTAAAGTTAATGTGGCCCCA 57.610 40.909 0.00 0.00 0.00 4.96
251 252 4.941713 TCTTAAAGTTAATGTGGCCCCAT 58.058 39.130 0.00 0.00 0.00 4.00
252 253 5.337788 TCTTAAAGTTAATGTGGCCCCATT 58.662 37.500 17.91 17.91 38.54 3.16
253 254 3.979101 AAAGTTAATGTGGCCCCATTG 57.021 42.857 22.16 0.00 35.85 2.82
254 255 1.194218 AGTTAATGTGGCCCCATTGC 58.806 50.000 22.16 14.60 35.85 3.56
255 256 0.901124 GTTAATGTGGCCCCATTGCA 59.099 50.000 22.16 7.08 35.85 4.08
256 257 1.277557 GTTAATGTGGCCCCATTGCAA 59.722 47.619 22.16 7.78 35.85 4.08
257 258 0.901124 TAATGTGGCCCCATTGCAAC 59.099 50.000 22.16 0.95 35.85 4.17
258 259 2.169937 AATGTGGCCCCATTGCAACG 62.170 55.000 13.11 0.00 38.05 4.10
259 260 4.740431 GTGGCCCCATTGCAACGC 62.740 66.667 0.00 0.73 0.00 4.84
261 262 4.740431 GGCCCCATTGCAACGCAC 62.740 66.667 0.00 0.00 38.71 5.34
263 264 4.418401 CCCCATTGCAACGCACGG 62.418 66.667 0.00 0.00 38.71 4.94
264 265 4.418401 CCCATTGCAACGCACGGG 62.418 66.667 0.00 3.16 42.59 5.28
275 276 3.782042 GCACGGGCGTTCTTCTAG 58.218 61.111 0.00 0.00 0.00 2.43
276 277 1.080025 GCACGGGCGTTCTTCTAGT 60.080 57.895 0.00 0.00 0.00 2.57
277 278 0.171903 GCACGGGCGTTCTTCTAGTA 59.828 55.000 0.00 0.00 0.00 1.82
278 279 1.202382 GCACGGGCGTTCTTCTAGTAT 60.202 52.381 0.00 0.00 0.00 2.12
279 280 2.033801 GCACGGGCGTTCTTCTAGTATA 59.966 50.000 0.00 0.00 0.00 1.47
280 281 3.852572 GCACGGGCGTTCTTCTAGTATAG 60.853 52.174 0.00 0.00 41.04 1.31
360 361 0.603975 GATCACAATAGCGCCCCTCC 60.604 60.000 2.29 0.00 0.00 4.30
1125 1138 3.957591 AGTTCTTCCCCGTTTACTCTC 57.042 47.619 0.00 0.00 0.00 3.20
1145 1159 2.233922 TCCATCTCGAAGGTTCCAGAAC 59.766 50.000 1.77 1.77 40.45 3.01
1411 1427 2.559330 GTGTTTTGGGCCGTAGCG 59.441 61.111 0.00 0.00 41.24 4.26
1509 1526 1.827399 GAGGACGGGGAGCAAACTCA 61.827 60.000 0.00 0.00 45.42 3.41
1525 1542 2.213499 ACTCAAGCTTGAACTGAACCG 58.787 47.619 28.16 16.72 36.64 4.44
1583 1600 4.537135 TCTGGTGGTACTAGAAGCAAAG 57.463 45.455 0.00 0.00 32.56 2.77
1611 1628 7.838696 TGGAGCTTAATCTTGATGGGAAAAATA 59.161 33.333 0.00 0.00 0.00 1.40
1613 1630 9.688592 GAGCTTAATCTTGATGGGAAAAATATG 57.311 33.333 0.00 0.00 0.00 1.78
1725 1742 0.682852 AAACCTCGGATCCACAACGA 59.317 50.000 13.41 1.48 35.14 3.85
1843 1861 4.695217 ATACCAGTATTGTTTGGTTGCG 57.305 40.909 1.03 0.00 45.16 4.85
1975 1994 4.897924 CGCATGCTTACGTAATTGTATGTG 59.102 41.667 17.13 18.69 31.69 3.21
2015 2034 7.786178 TTCAAGATCTATTATTGTGTTCCCG 57.214 36.000 0.00 0.00 0.00 5.14
2026 2045 5.776173 ATTGTGTTCCCGTGTAAAATCAA 57.224 34.783 0.00 0.00 0.00 2.57
2047 2066 5.010617 TCAAGCCATATAGAATACAGCGTCA 59.989 40.000 0.00 0.00 0.00 4.35
2048 2067 4.810790 AGCCATATAGAATACAGCGTCAC 58.189 43.478 0.00 0.00 0.00 3.67
2108 2127 5.636903 TCCAGAGCTAGGATAATGCTTTT 57.363 39.130 3.31 0.00 37.16 2.27
2154 2623 6.445357 TTTTGTGACTAAGGTTGTTTCCTC 57.555 37.500 0.00 0.00 36.74 3.71
2165 2634 4.658901 AGGTTGTTTCCTCTCCTGAAGTTA 59.341 41.667 0.00 0.00 31.32 2.24
2166 2635 5.310857 AGGTTGTTTCCTCTCCTGAAGTTAT 59.689 40.000 0.00 0.00 31.32 1.89
2167 2636 6.004574 GGTTGTTTCCTCTCCTGAAGTTATT 58.995 40.000 0.00 0.00 0.00 1.40
2175 2644 5.422331 CCTCTCCTGAAGTTATTACTCACCA 59.578 44.000 0.00 0.00 31.99 4.17
2248 2719 4.202284 ACCTTTCATGATTATTGGCCATGC 60.202 41.667 6.09 0.00 37.99 4.06
2249 2720 4.202274 CCTTTCATGATTATTGGCCATGCA 60.202 41.667 6.09 0.57 37.99 3.96
2481 2954 4.221703 TCTCTGAATCACCTCTTTCTCCAC 59.778 45.833 0.00 0.00 0.00 4.02
2505 2978 7.118825 CACGATCATTCTGGAATGCTATAATGT 59.881 37.037 15.96 6.80 45.77 2.71
2708 3181 7.703058 ACCATCGGTTAATCTTGAAATTCTT 57.297 32.000 0.00 0.00 27.29 2.52
2767 3240 9.630098 ATGAGCTCAAACAGTTTGTAATATTTG 57.370 29.630 22.50 7.80 41.36 2.32
2807 3280 8.819643 AGTAAACTTATCTGTTGACTGAAGAC 57.180 34.615 0.00 0.00 39.47 3.01
2818 3291 6.826668 TGTTGACTGAAGACTTATCCTGAAA 58.173 36.000 0.00 0.00 0.00 2.69
2888 3361 9.041354 GGTCTCAGGAATAAATAGGAGATATGT 57.959 37.037 0.00 0.00 34.33 2.29
2995 3469 5.523916 ACAAGGTAAAATATAGAGCAGCACG 59.476 40.000 0.00 0.00 0.00 5.34
3046 3520 9.988350 GAACAATGTAACCTTAGTATCATGTTG 57.012 33.333 0.00 0.00 0.00 3.33
3076 3550 3.996150 AAAGTGGAGTGCTGATTGTTG 57.004 42.857 0.00 0.00 0.00 3.33
3090 3564 6.314648 TGCTGATTGTTGAGTATGAGATGTTC 59.685 38.462 0.00 0.00 0.00 3.18
3149 3623 0.800683 CGGTTCGTCGCAAGCATCTA 60.801 55.000 0.00 0.00 37.18 1.98
3161 3635 6.420903 GTCGCAAGCATCTACACTGATATTTA 59.579 38.462 0.00 0.00 37.18 1.40
3164 3638 7.020010 GCAAGCATCTACACTGATATTTATGC 58.980 38.462 0.00 0.00 38.95 3.14
3190 3664 7.527196 CGGTTATCCCTACATTACCTGATGAAT 60.527 40.741 0.00 0.00 0.00 2.57
3406 3880 3.815401 ACACAAACCTTTTCCTCATCTCG 59.185 43.478 0.00 0.00 0.00 4.04
3409 3883 5.008613 CACAAACCTTTTCCTCATCTCGAAA 59.991 40.000 0.00 0.00 0.00 3.46
3437 3911 7.416154 TGTTGGCTAACTCATATAATAACGC 57.584 36.000 14.47 0.00 37.68 4.84
3597 4072 2.961741 TGTCCATGAGCCAGAGATACTC 59.038 50.000 0.00 0.00 0.00 2.59
3670 4145 3.460103 GGCCAGATTTGGTAATGCATTG 58.540 45.455 22.27 2.13 46.80 2.82
3728 4203 6.384886 TCCTTACCGTAGATTTATTGGTTCCT 59.615 38.462 0.00 0.00 34.18 3.36
3800 4276 9.236691 CACATAAAATAGACATTTGAAATCCGG 57.763 33.333 0.00 0.00 34.53 5.14
3801 4277 9.184523 ACATAAAATAGACATTTGAAATCCGGA 57.815 29.630 6.61 6.61 34.53 5.14
3802 4278 9.669353 CATAAAATAGACATTTGAAATCCGGAG 57.331 33.333 11.34 0.00 34.53 4.63
3803 4279 7.703058 AAAATAGACATTTGAAATCCGGAGT 57.297 32.000 11.34 3.58 34.53 3.85
5151 5629 4.384940 AGGCTTTGTTGTTGTTGTTGTTT 58.615 34.783 0.00 0.00 0.00 2.83
5357 5835 2.674852 TGCGTTCATTCAGCTCATCTTC 59.325 45.455 0.00 0.00 0.00 2.87
5379 5857 8.592809 TCTTCCAATATATTTTGTTTTGCCACT 58.407 29.630 0.00 0.00 0.00 4.00
5380 5858 8.545229 TTCCAATATATTTTGTTTTGCCACTG 57.455 30.769 0.00 0.00 0.00 3.66
5382 5860 6.455380 CCAATATATTTTGTTTTGCCACTGCG 60.455 38.462 0.00 0.00 41.78 5.18
5562 6040 1.308047 TTTCAGCGTGCTTGTCACAT 58.692 45.000 0.00 0.00 45.92 3.21
5657 6140 4.458256 TGTCCATTATACTCCCCGACTA 57.542 45.455 0.00 0.00 0.00 2.59
5715 6198 7.072454 TGAGAAGAAATTACATGCTATACCCCT 59.928 37.037 0.00 0.00 0.00 4.79
5781 6264 7.934120 ACATAATACTTTGGAGGAATACTCTGC 59.066 37.037 0.00 0.00 45.83 4.26
5803 6286 3.803778 CCCTTTTTGCTTTGCTGTAACAG 59.196 43.478 0.00 0.00 34.12 3.16
5864 6667 1.432023 AACCCACCCAACCCCTGTAG 61.432 60.000 0.00 0.00 0.00 2.74
6005 6809 7.513371 TGTTTTAATATCCGTGTTTCCTTGT 57.487 32.000 0.00 0.00 0.00 3.16
6177 6981 6.901300 TCCCATCCTCTTATGTAAACACTACT 59.099 38.462 0.00 0.00 0.00 2.57
6215 7019 1.465689 CGCCGAGCACAAACTATTTGG 60.466 52.381 6.28 0.00 44.81 3.28
6252 7059 9.566432 CTCTGAGGAATAATAAATAAAGCACCT 57.434 33.333 0.00 0.00 0.00 4.00
6258 7065 8.074370 GGAATAATAAATAAAGCACCTTCGGAC 58.926 37.037 0.00 0.00 0.00 4.79
6277 7123 5.924254 TCGGACTGTGTTTATGAACTACTTG 59.076 40.000 1.75 0.61 36.70 3.16
6296 7142 0.250770 GCTCCAAAAACCCGTCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
6297 7143 1.809684 CTCCAAAAACCCGTCCTCTC 58.190 55.000 0.00 0.00 0.00 3.20
6298 7144 1.071699 CTCCAAAAACCCGTCCTCTCA 59.928 52.381 0.00 0.00 0.00 3.27
6299 7145 1.071699 TCCAAAAACCCGTCCTCTCAG 59.928 52.381 0.00 0.00 0.00 3.35
6300 7146 0.875059 CAAAAACCCGTCCTCTCAGC 59.125 55.000 0.00 0.00 0.00 4.26
6301 7147 0.765510 AAAAACCCGTCCTCTCAGCT 59.234 50.000 0.00 0.00 0.00 4.24
6302 7148 0.765510 AAAACCCGTCCTCTCAGCTT 59.234 50.000 0.00 0.00 0.00 3.74
6303 7149 0.035458 AAACCCGTCCTCTCAGCTTG 59.965 55.000 0.00 0.00 0.00 4.01
6304 7150 1.831652 AACCCGTCCTCTCAGCTTGG 61.832 60.000 0.00 0.00 0.00 3.61
6305 7151 1.984570 CCCGTCCTCTCAGCTTGGA 60.985 63.158 0.00 0.00 0.00 3.53
6306 7152 1.333636 CCCGTCCTCTCAGCTTGGAT 61.334 60.000 0.00 0.00 32.03 3.41
6307 7153 0.539051 CCGTCCTCTCAGCTTGGATT 59.461 55.000 0.00 0.00 32.03 3.01
6308 7154 1.649664 CGTCCTCTCAGCTTGGATTG 58.350 55.000 0.00 0.00 32.03 2.67
6309 7155 1.377536 GTCCTCTCAGCTTGGATTGC 58.622 55.000 0.00 0.00 32.03 3.56
6310 7156 0.986527 TCCTCTCAGCTTGGATTGCA 59.013 50.000 0.00 0.00 0.00 4.08
6311 7157 1.065636 TCCTCTCAGCTTGGATTGCAG 60.066 52.381 0.00 0.00 0.00 4.41
6312 7158 1.380524 CTCTCAGCTTGGATTGCAGG 58.619 55.000 0.00 0.00 0.00 4.85
6313 7159 0.986527 TCTCAGCTTGGATTGCAGGA 59.013 50.000 0.00 0.00 0.00 3.86
6314 7160 1.562942 TCTCAGCTTGGATTGCAGGAT 59.437 47.619 0.00 0.00 0.00 3.24
6315 7161 1.676529 CTCAGCTTGGATTGCAGGATG 59.323 52.381 0.00 0.00 40.87 3.51
6327 7173 1.214589 CAGGATGCAACTTGCCTGC 59.785 57.895 11.29 6.85 44.23 4.85
6331 7177 4.177673 TGCAACTTGCCTGCATGA 57.822 50.000 11.29 0.00 44.67 3.07
6332 7178 2.427742 TGCAACTTGCCTGCATGAA 58.572 47.368 11.29 0.00 44.67 2.57
6333 7179 0.751452 TGCAACTTGCCTGCATGAAA 59.249 45.000 11.29 0.00 44.67 2.69
6334 7180 1.269883 TGCAACTTGCCTGCATGAAAG 60.270 47.619 11.29 8.09 44.67 2.62
6335 7181 1.425412 CAACTTGCCTGCATGAAAGC 58.575 50.000 9.48 0.00 0.00 3.51
6336 7182 0.038892 AACTTGCCTGCATGAAAGCG 60.039 50.000 9.48 0.00 37.31 4.68
6337 7183 1.153901 CTTGCCTGCATGAAAGCGG 60.154 57.895 0.00 0.00 40.60 5.52
6342 7188 3.932459 CTGCATGAAAGCGGGAATC 57.068 52.632 0.00 0.00 37.24 2.52
6343 7189 0.028505 CTGCATGAAAGCGGGAATCG 59.971 55.000 0.00 0.00 42.76 3.34
6357 7203 1.098050 GAATCGCTTGGATTGCTGGT 58.902 50.000 0.00 0.00 45.33 4.00
6393 7245 3.998913 TGAAGCAGGAATCACCATACA 57.001 42.857 0.00 0.00 42.04 2.29
6424 7276 6.757897 TCAGACTTTTTGAGAACATGTGTT 57.242 33.333 0.00 0.00 41.64 3.32
6425 7277 7.156876 TCAGACTTTTTGAGAACATGTGTTT 57.843 32.000 0.00 0.00 38.56 2.83
6484 7345 1.336517 CCTCAATTGCTGCACAGTTGG 60.337 52.381 17.69 0.00 44.00 3.77
6485 7346 1.610038 CTCAATTGCTGCACAGTTGGA 59.390 47.619 17.69 0.00 44.00 3.53
6487 7348 2.129607 CAATTGCTGCACAGTTGGAAC 58.870 47.619 0.00 0.00 41.10 3.62
6488 7349 0.675633 ATTGCTGCACAGTTGGAACC 59.324 50.000 0.00 0.00 0.00 3.62
6489 7350 0.395586 TTGCTGCACAGTTGGAACCT 60.396 50.000 0.00 0.00 0.00 3.50
6494 7363 3.005791 GCTGCACAGTTGGAACCTAATTT 59.994 43.478 0.00 0.00 0.00 1.82
6496 7365 4.469657 TGCACAGTTGGAACCTAATTTCT 58.530 39.130 0.00 0.00 0.00 2.52
6497 7366 4.892934 TGCACAGTTGGAACCTAATTTCTT 59.107 37.500 0.00 0.00 0.00 2.52
6499 7368 5.222631 CACAGTTGGAACCTAATTTCTTGC 58.777 41.667 0.00 0.00 0.00 4.01
6514 7383 3.052455 TCTTGCGAGAATGGTGCTTTA 57.948 42.857 0.00 0.00 0.00 1.85
6515 7384 3.002791 TCTTGCGAGAATGGTGCTTTAG 58.997 45.455 0.00 0.00 0.00 1.85
6521 7390 3.243877 CGAGAATGGTGCTTTAGTCATCG 59.756 47.826 0.00 0.00 0.00 3.84
6565 7449 3.445450 TGTCCTCTCTGCTAAGCTAACTG 59.555 47.826 0.00 0.00 0.00 3.16
6589 7473 3.430453 CCAATCTAAAAAGGCCCAGTCA 58.570 45.455 0.00 0.00 0.00 3.41
6670 7557 2.031682 CACTTCTGTACACAGCAAAGCC 60.032 50.000 4.43 0.00 43.46 4.35
6676 7563 0.882927 TACACAGCAAAGCCGTGTCC 60.883 55.000 13.60 0.00 42.65 4.02
6693 7580 3.726517 CCACGCGAGGCCAACAAG 61.727 66.667 15.93 0.00 0.00 3.16
6694 7581 3.726517 CACGCGAGGCCAACAAGG 61.727 66.667 15.93 0.00 41.84 3.61
6697 7584 4.660938 GCGAGGCCAACAAGGGGT 62.661 66.667 5.01 0.00 38.09 4.95
6698 7585 3.074281 CGAGGCCAACAAGGGGTA 58.926 61.111 5.01 0.00 38.09 3.69
6699 7586 1.078426 CGAGGCCAACAAGGGGTAG 60.078 63.158 5.01 0.00 38.09 3.18
6700 7587 1.378646 GAGGCCAACAAGGGGTAGC 60.379 63.158 5.01 0.00 38.09 3.58
6701 7588 2.137177 GAGGCCAACAAGGGGTAGCA 62.137 60.000 5.01 0.00 38.09 3.49
6702 7589 1.678970 GGCCAACAAGGGGTAGCAG 60.679 63.158 0.00 0.00 38.09 4.24
6703 7590 1.678970 GCCAACAAGGGGTAGCAGG 60.679 63.158 0.00 0.00 38.09 4.85
6704 7591 2.074967 CCAACAAGGGGTAGCAGGA 58.925 57.895 0.00 0.00 0.00 3.86
6705 7592 0.404040 CCAACAAGGGGTAGCAGGAA 59.596 55.000 0.00 0.00 0.00 3.36
6706 7593 1.203001 CCAACAAGGGGTAGCAGGAAA 60.203 52.381 0.00 0.00 0.00 3.13
6707 7594 2.593026 CAACAAGGGGTAGCAGGAAAA 58.407 47.619 0.00 0.00 0.00 2.29
6708 7595 2.962421 CAACAAGGGGTAGCAGGAAAAA 59.038 45.455 0.00 0.00 0.00 1.94
6709 7596 3.542969 ACAAGGGGTAGCAGGAAAAAT 57.457 42.857 0.00 0.00 0.00 1.82
6710 7597 3.856900 ACAAGGGGTAGCAGGAAAAATT 58.143 40.909 0.00 0.00 0.00 1.82
6711 7598 3.832490 ACAAGGGGTAGCAGGAAAAATTC 59.168 43.478 0.00 0.00 0.00 2.17
6712 7599 4.089361 CAAGGGGTAGCAGGAAAAATTCT 58.911 43.478 0.00 0.00 0.00 2.40
6713 7600 3.969553 AGGGGTAGCAGGAAAAATTCTC 58.030 45.455 0.00 0.00 0.00 2.87
6714 7601 3.024547 GGGGTAGCAGGAAAAATTCTCC 58.975 50.000 0.00 0.00 0.00 3.71
6715 7602 3.309193 GGGGTAGCAGGAAAAATTCTCCT 60.309 47.826 3.67 3.67 44.53 3.69
6716 7603 4.079958 GGGGTAGCAGGAAAAATTCTCCTA 60.080 45.833 8.38 0.00 41.61 2.94
6717 7604 5.506708 GGGTAGCAGGAAAAATTCTCCTAA 58.493 41.667 8.38 0.00 41.61 2.69
6718 7605 5.949952 GGGTAGCAGGAAAAATTCTCCTAAA 59.050 40.000 8.38 0.00 41.61 1.85
6719 7606 6.436218 GGGTAGCAGGAAAAATTCTCCTAAAA 59.564 38.462 8.38 0.00 41.61 1.52
6720 7607 7.039293 GGGTAGCAGGAAAAATTCTCCTAAAAA 60.039 37.037 8.38 0.00 41.61 1.94
6767 7654 3.850122 AGTTTATTTTTGGAGAGCGGC 57.150 42.857 0.00 0.00 0.00 6.53
6768 7655 3.421844 AGTTTATTTTTGGAGAGCGGCT 58.578 40.909 0.00 0.00 0.00 5.52
6769 7656 4.585879 AGTTTATTTTTGGAGAGCGGCTA 58.414 39.130 0.60 0.00 0.00 3.93
6770 7657 5.007682 AGTTTATTTTTGGAGAGCGGCTAA 58.992 37.500 0.60 0.00 0.00 3.09
6771 7658 5.475564 AGTTTATTTTTGGAGAGCGGCTAAA 59.524 36.000 0.60 0.00 0.00 1.85
6772 7659 6.152831 AGTTTATTTTTGGAGAGCGGCTAAAT 59.847 34.615 0.60 6.93 0.00 1.40
6773 7660 3.848272 TTTTTGGAGAGCGGCTAAATG 57.152 42.857 0.60 0.00 0.00 2.32
6774 7661 1.094785 TTTGGAGAGCGGCTAAATGC 58.905 50.000 0.60 0.00 41.94 3.56
6786 7673 2.446435 GCTAAATGCCTCCCAAGTTCA 58.554 47.619 0.00 0.00 35.15 3.18
6787 7674 2.825532 GCTAAATGCCTCCCAAGTTCAA 59.174 45.455 0.00 0.00 35.15 2.69
6788 7675 3.367395 GCTAAATGCCTCCCAAGTTCAAC 60.367 47.826 0.00 0.00 35.15 3.18
6789 7676 2.683211 AATGCCTCCCAAGTTCAACT 57.317 45.000 0.00 0.00 0.00 3.16
6790 7677 3.806949 AATGCCTCCCAAGTTCAACTA 57.193 42.857 0.00 0.00 0.00 2.24
6791 7678 2.561478 TGCCTCCCAAGTTCAACTAC 57.439 50.000 0.00 0.00 0.00 2.73
6792 7679 2.054799 TGCCTCCCAAGTTCAACTACT 58.945 47.619 0.00 0.00 0.00 2.57
6793 7680 2.441750 TGCCTCCCAAGTTCAACTACTT 59.558 45.455 0.00 0.00 38.87 2.24
6801 7688 5.274881 CAAGTTCAACTACTTGCTAGCAG 57.725 43.478 18.45 14.22 45.85 4.24
6802 7689 4.608948 AGTTCAACTACTTGCTAGCAGT 57.391 40.909 18.45 18.92 28.86 4.40
6803 7690 5.723672 AGTTCAACTACTTGCTAGCAGTA 57.276 39.130 18.45 19.01 27.67 2.74
6804 7691 6.097915 AGTTCAACTACTTGCTAGCAGTAA 57.902 37.500 18.45 2.03 27.67 2.24
6805 7692 6.522054 AGTTCAACTACTTGCTAGCAGTAAA 58.478 36.000 18.45 10.26 27.67 2.01
6806 7693 6.990349 AGTTCAACTACTTGCTAGCAGTAAAA 59.010 34.615 18.45 7.46 27.67 1.52
6807 7694 7.661847 AGTTCAACTACTTGCTAGCAGTAAAAT 59.338 33.333 18.45 9.63 27.67 1.82
6808 7695 8.932791 GTTCAACTACTTGCTAGCAGTAAAATA 58.067 33.333 18.45 0.00 27.67 1.40
6809 7696 9.496873 TTCAACTACTTGCTAGCAGTAAAATAA 57.503 29.630 18.45 10.88 27.67 1.40
6810 7697 9.496873 TCAACTACTTGCTAGCAGTAAAATAAA 57.503 29.630 18.45 0.00 27.67 1.40
6867 7754 6.847956 TTTTTGGCATGAAAGATGTTTGAG 57.152 33.333 0.00 0.00 0.00 3.02
6868 7755 5.534207 TTTGGCATGAAAGATGTTTGAGT 57.466 34.783 0.00 0.00 0.00 3.41
6869 7756 4.508461 TGGCATGAAAGATGTTTGAGTG 57.492 40.909 0.00 0.00 0.00 3.51
6870 7757 3.248266 GGCATGAAAGATGTTTGAGTGC 58.752 45.455 0.00 0.51 0.00 4.40
6871 7758 2.912967 GCATGAAAGATGTTTGAGTGCG 59.087 45.455 0.00 0.00 0.00 5.34
6872 7759 3.610114 GCATGAAAGATGTTTGAGTGCGT 60.610 43.478 0.00 0.00 0.00 5.24
6873 7760 3.607422 TGAAAGATGTTTGAGTGCGTG 57.393 42.857 0.00 0.00 0.00 5.34
6874 7761 3.202097 TGAAAGATGTTTGAGTGCGTGA 58.798 40.909 0.00 0.00 0.00 4.35
6875 7762 3.248363 TGAAAGATGTTTGAGTGCGTGAG 59.752 43.478 0.00 0.00 0.00 3.51
6876 7763 1.800805 AGATGTTTGAGTGCGTGAGG 58.199 50.000 0.00 0.00 0.00 3.86
6877 7764 1.070758 AGATGTTTGAGTGCGTGAGGT 59.929 47.619 0.00 0.00 0.00 3.85
6878 7765 1.461127 GATGTTTGAGTGCGTGAGGTC 59.539 52.381 0.00 0.00 0.00 3.85
6879 7766 0.531974 TGTTTGAGTGCGTGAGGTCC 60.532 55.000 0.00 0.00 0.00 4.46
6880 7767 1.300620 TTTGAGTGCGTGAGGTCCG 60.301 57.895 0.00 0.00 0.00 4.79
6881 7768 2.023414 TTTGAGTGCGTGAGGTCCGT 62.023 55.000 0.00 0.00 0.00 4.69
6882 7769 2.430921 GAGTGCGTGAGGTCCGTG 60.431 66.667 0.00 0.00 0.00 4.94
6883 7770 4.664677 AGTGCGTGAGGTCCGTGC 62.665 66.667 0.00 0.00 0.00 5.34
6886 7773 4.980805 GCGTGAGGTCCGTGCCAA 62.981 66.667 0.00 0.00 0.00 4.52
6887 7774 2.047274 CGTGAGGTCCGTGCCAAT 60.047 61.111 0.00 0.00 0.00 3.16
6888 7775 1.671054 CGTGAGGTCCGTGCCAATT 60.671 57.895 0.00 0.00 0.00 2.32
6889 7776 1.234615 CGTGAGGTCCGTGCCAATTT 61.235 55.000 0.00 0.00 0.00 1.82
6890 7777 0.958822 GTGAGGTCCGTGCCAATTTT 59.041 50.000 0.00 0.00 0.00 1.82
6891 7778 1.068541 GTGAGGTCCGTGCCAATTTTC 60.069 52.381 0.00 0.00 0.00 2.29
6892 7779 1.243902 GAGGTCCGTGCCAATTTTCA 58.756 50.000 0.00 0.00 0.00 2.69
6893 7780 1.200020 GAGGTCCGTGCCAATTTTCAG 59.800 52.381 0.00 0.00 0.00 3.02
6894 7781 0.388520 GGTCCGTGCCAATTTTCAGC 60.389 55.000 0.00 0.00 0.00 4.26
6895 7782 0.598065 GTCCGTGCCAATTTTCAGCT 59.402 50.000 0.00 0.00 0.00 4.24
6896 7783 0.881118 TCCGTGCCAATTTTCAGCTC 59.119 50.000 0.00 0.00 0.00 4.09
6897 7784 0.454957 CCGTGCCAATTTTCAGCTCG 60.455 55.000 0.00 0.00 41.64 5.03
6898 7785 0.238289 CGTGCCAATTTTCAGCTCGT 59.762 50.000 0.00 0.00 38.35 4.18
6899 7786 1.334960 CGTGCCAATTTTCAGCTCGTT 60.335 47.619 0.00 0.00 38.35 3.85
6900 7787 2.742774 GTGCCAATTTTCAGCTCGTTT 58.257 42.857 0.00 0.00 0.00 3.60
6901 7788 2.472488 GTGCCAATTTTCAGCTCGTTTG 59.528 45.455 0.00 0.00 0.00 2.93
6902 7789 2.061028 GCCAATTTTCAGCTCGTTTGG 58.939 47.619 6.21 6.21 37.31 3.28
6903 7790 2.288152 GCCAATTTTCAGCTCGTTTGGA 60.288 45.455 12.31 0.00 36.55 3.53
6904 7791 3.798548 GCCAATTTTCAGCTCGTTTGGAA 60.799 43.478 12.31 0.00 36.55 3.53
6905 7792 3.735746 CCAATTTTCAGCTCGTTTGGAAC 59.264 43.478 5.04 0.00 36.55 3.62
6906 7793 4.358851 CAATTTTCAGCTCGTTTGGAACA 58.641 39.130 0.00 0.00 0.00 3.18
6907 7794 4.853924 ATTTTCAGCTCGTTTGGAACAT 57.146 36.364 0.00 0.00 39.30 2.71
6908 7795 3.896648 TTTCAGCTCGTTTGGAACATC 57.103 42.857 0.00 0.00 39.30 3.06
6909 7796 1.808411 TCAGCTCGTTTGGAACATCC 58.192 50.000 0.00 0.00 39.30 3.51
6910 7797 0.443869 CAGCTCGTTTGGAACATCCG 59.556 55.000 0.00 0.00 40.17 4.18
6911 7798 0.320374 AGCTCGTTTGGAACATCCGA 59.680 50.000 0.00 0.00 40.17 4.55
6913 7800 2.080286 CTCGTTTGGAACATCCGAGT 57.920 50.000 0.00 0.00 46.53 4.18
6914 7801 3.226346 CTCGTTTGGAACATCCGAGTA 57.774 47.619 0.00 0.00 46.53 2.59
6915 7802 3.179830 CTCGTTTGGAACATCCGAGTAG 58.820 50.000 0.00 0.00 46.53 2.57
6916 7803 1.659098 CGTTTGGAACATCCGAGTAGC 59.341 52.381 0.00 0.00 40.17 3.58
6917 7804 2.674177 CGTTTGGAACATCCGAGTAGCT 60.674 50.000 0.00 0.00 40.17 3.32
6918 7805 2.930682 GTTTGGAACATCCGAGTAGCTC 59.069 50.000 0.00 0.00 40.17 4.09
6919 7806 2.145397 TGGAACATCCGAGTAGCTCT 57.855 50.000 0.00 0.00 40.17 4.09
6920 7807 2.025155 TGGAACATCCGAGTAGCTCTC 58.975 52.381 0.00 0.00 40.17 3.20
6921 7808 2.025155 GGAACATCCGAGTAGCTCTCA 58.975 52.381 11.93 0.00 42.88 3.27
6922 7809 2.034053 GGAACATCCGAGTAGCTCTCAG 59.966 54.545 11.93 3.09 42.88 3.35
6923 7810 1.028905 ACATCCGAGTAGCTCTCAGC 58.971 55.000 11.93 0.00 42.88 4.26
6924 7811 1.028130 CATCCGAGTAGCTCTCAGCA 58.972 55.000 11.93 0.00 45.56 4.41
6925 7812 1.406898 CATCCGAGTAGCTCTCAGCAA 59.593 52.381 11.93 0.00 45.56 3.91
6926 7813 1.545841 TCCGAGTAGCTCTCAGCAAA 58.454 50.000 11.93 0.00 45.56 3.68
6927 7814 1.893137 TCCGAGTAGCTCTCAGCAAAA 59.107 47.619 11.93 0.00 45.56 2.44
6928 7815 2.299013 TCCGAGTAGCTCTCAGCAAAAA 59.701 45.455 11.93 0.00 45.56 1.94
6952 7839 8.788325 AAAATTAGAGTGCGGATAAGTTTACT 57.212 30.769 0.00 0.00 28.32 2.24
6953 7840 9.880157 AAAATTAGAGTGCGGATAAGTTTACTA 57.120 29.630 0.00 0.00 28.32 1.82
6957 7844 7.772332 AGAGTGCGGATAAGTTTACTATTTG 57.228 36.000 0.00 0.00 0.00 2.32
6958 7845 7.328737 AGAGTGCGGATAAGTTTACTATTTGT 58.671 34.615 0.00 0.00 0.00 2.83
6959 7846 7.277981 AGAGTGCGGATAAGTTTACTATTTGTG 59.722 37.037 0.00 0.00 0.00 3.33
6960 7847 5.963586 GTGCGGATAAGTTTACTATTTGTGC 59.036 40.000 0.00 0.00 0.00 4.57
6961 7848 5.644206 TGCGGATAAGTTTACTATTTGTGCA 59.356 36.000 0.00 0.00 0.00 4.57
6962 7849 5.963586 GCGGATAAGTTTACTATTTGTGCAC 59.036 40.000 10.75 10.75 0.00 4.57
6963 7850 6.183360 GCGGATAAGTTTACTATTTGTGCACT 60.183 38.462 19.41 0.00 0.00 4.40
6964 7851 7.010738 GCGGATAAGTTTACTATTTGTGCACTA 59.989 37.037 19.41 7.83 0.00 2.74
6965 7852 9.042008 CGGATAAGTTTACTATTTGTGCACTAT 57.958 33.333 19.41 13.61 0.00 2.12
6970 7857 9.502091 AAGTTTACTATTTGTGCACTATTCTGA 57.498 29.630 19.41 0.00 0.00 3.27
6971 7858 8.936864 AGTTTACTATTTGTGCACTATTCTGAC 58.063 33.333 19.41 6.77 0.00 3.51
6972 7859 8.936864 GTTTACTATTTGTGCACTATTCTGACT 58.063 33.333 19.41 0.00 0.00 3.41
6973 7860 8.703604 TTACTATTTGTGCACTATTCTGACTC 57.296 34.615 19.41 0.00 0.00 3.36
6974 7861 6.701340 ACTATTTGTGCACTATTCTGACTCA 58.299 36.000 19.41 0.00 0.00 3.41
6975 7862 7.334090 ACTATTTGTGCACTATTCTGACTCAT 58.666 34.615 19.41 0.11 0.00 2.90
6976 7863 7.826252 ACTATTTGTGCACTATTCTGACTCATT 59.174 33.333 19.41 0.00 0.00 2.57
6977 7864 9.317936 CTATTTGTGCACTATTCTGACTCATTA 57.682 33.333 19.41 0.00 0.00 1.90
6978 7865 8.743085 ATTTGTGCACTATTCTGACTCATTAT 57.257 30.769 19.41 0.00 0.00 1.28
6979 7866 8.565896 TTTGTGCACTATTCTGACTCATTATT 57.434 30.769 19.41 0.00 0.00 1.40
6980 7867 8.565896 TTGTGCACTATTCTGACTCATTATTT 57.434 30.769 19.41 0.00 0.00 1.40
6981 7868 8.565896 TGTGCACTATTCTGACTCATTATTTT 57.434 30.769 19.41 0.00 0.00 1.82
6982 7869 9.013229 TGTGCACTATTCTGACTCATTATTTTT 57.987 29.630 19.41 0.00 0.00 1.94
6998 7885 1.675552 TTTTTAGGGCTGATAGGCGC 58.324 50.000 0.00 0.00 42.43 6.53
6999 7886 0.179029 TTTTAGGGCTGATAGGCGCC 60.179 55.000 21.89 21.89 44.57 6.53
7003 7890 4.632974 GGCTGATAGGCGCCAGGG 62.633 72.222 31.54 14.45 45.59 4.45
7005 7892 3.865383 CTGATAGGCGCCAGGGCA 61.865 66.667 31.54 19.15 45.36 5.36
7006 7893 3.170672 TGATAGGCGCCAGGGCAT 61.171 61.111 31.54 13.14 45.36 4.40
7007 7894 2.670934 GATAGGCGCCAGGGCATG 60.671 66.667 31.54 0.00 45.36 4.06
7008 7895 4.962836 ATAGGCGCCAGGGCATGC 62.963 66.667 31.54 9.90 45.36 4.06
7026 7913 2.824041 CCAGATTTGGGCCGGTCG 60.824 66.667 1.90 0.00 41.05 4.79
7027 7914 3.508840 CAGATTTGGGCCGGTCGC 61.509 66.667 1.90 4.53 0.00 5.19
7028 7915 4.028490 AGATTTGGGCCGGTCGCA 62.028 61.111 1.90 7.47 40.31 5.10
7029 7916 3.810896 GATTTGGGCCGGTCGCAC 61.811 66.667 13.63 0.00 43.39 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.686683 GCACCCTATGAAATATGGTAAGATTAT 57.313 33.333 0.00 0.00 44.61 1.28
6 7 6.763715 AGCACCCTATGAAATATGGTAAGA 57.236 37.500 0.00 0.00 44.61 2.10
7 8 8.321353 TGATAGCACCCTATGAAATATGGTAAG 58.679 37.037 0.00 0.00 44.61 2.34
8 9 8.213489 TGATAGCACCCTATGAAATATGGTAA 57.787 34.615 0.00 0.00 44.61 2.85
9 10 7.806680 TGATAGCACCCTATGAAATATGGTA 57.193 36.000 0.00 0.00 44.61 3.25
10 11 6.702449 TGATAGCACCCTATGAAATATGGT 57.298 37.500 0.00 0.00 46.92 3.55
11 12 8.585471 AAATGATAGCACCCTATGAAATATGG 57.415 34.615 0.00 0.00 40.08 2.74
14 15 9.639563 TGAAAAATGATAGCACCCTATGAAATA 57.360 29.630 0.00 0.00 34.44 1.40
15 16 8.537728 TGAAAAATGATAGCACCCTATGAAAT 57.462 30.769 0.00 0.00 34.44 2.17
16 17 7.953005 TGAAAAATGATAGCACCCTATGAAA 57.047 32.000 0.00 0.00 34.44 2.69
17 18 7.560991 ACATGAAAAATGATAGCACCCTATGAA 59.439 33.333 0.00 0.00 34.44 2.57
18 19 7.062322 ACATGAAAAATGATAGCACCCTATGA 58.938 34.615 0.00 0.00 34.44 2.15
19 20 7.281040 ACATGAAAAATGATAGCACCCTATG 57.719 36.000 0.00 0.00 34.44 2.23
20 21 7.902920 AACATGAAAAATGATAGCACCCTAT 57.097 32.000 0.00 0.00 36.98 2.57
21 22 7.178274 ACAAACATGAAAAATGATAGCACCCTA 59.822 33.333 0.00 0.00 0.00 3.53
22 23 6.014327 ACAAACATGAAAAATGATAGCACCCT 60.014 34.615 0.00 0.00 0.00 4.34
23 24 6.165577 ACAAACATGAAAAATGATAGCACCC 58.834 36.000 0.00 0.00 0.00 4.61
24 25 8.028938 ACTACAAACATGAAAAATGATAGCACC 58.971 33.333 0.00 0.00 0.00 5.01
25 26 8.970691 ACTACAAACATGAAAAATGATAGCAC 57.029 30.769 0.00 0.00 0.00 4.40
26 27 9.409312 CAACTACAAACATGAAAAATGATAGCA 57.591 29.630 0.00 0.00 0.00 3.49
27 28 9.410556 ACAACTACAAACATGAAAAATGATAGC 57.589 29.630 0.00 0.00 0.00 2.97
222 223 8.040727 GGGCCACATTAACTTTAAGAATTCAAT 58.959 33.333 4.39 0.00 0.00 2.57
223 224 7.382898 GGGCCACATTAACTTTAAGAATTCAA 58.617 34.615 4.39 0.00 0.00 2.69
224 225 6.071051 GGGGCCACATTAACTTTAAGAATTCA 60.071 38.462 4.39 0.00 0.00 2.57
225 226 6.071051 TGGGGCCACATTAACTTTAAGAATTC 60.071 38.462 1.54 0.00 0.00 2.17
226 227 5.782845 TGGGGCCACATTAACTTTAAGAATT 59.217 36.000 1.54 0.00 0.00 2.17
227 228 5.337788 TGGGGCCACATTAACTTTAAGAAT 58.662 37.500 1.54 0.00 0.00 2.40
228 229 4.742012 TGGGGCCACATTAACTTTAAGAA 58.258 39.130 1.54 0.00 0.00 2.52
229 230 4.390129 TGGGGCCACATTAACTTTAAGA 57.610 40.909 1.54 0.00 0.00 2.10
230 231 5.418676 CAATGGGGCCACATTAACTTTAAG 58.581 41.667 32.45 14.10 38.94 1.85
231 232 4.323104 GCAATGGGGCCACATTAACTTTAA 60.323 41.667 32.45 0.00 38.94 1.52
232 233 3.196685 GCAATGGGGCCACATTAACTTTA 59.803 43.478 32.45 0.00 38.94 1.85
233 234 2.027285 GCAATGGGGCCACATTAACTTT 60.027 45.455 32.45 8.35 38.94 2.66
234 235 1.554617 GCAATGGGGCCACATTAACTT 59.445 47.619 32.45 9.21 38.94 2.66
235 236 1.194218 GCAATGGGGCCACATTAACT 58.806 50.000 32.45 8.74 38.94 2.24
236 237 0.901124 TGCAATGGGGCCACATTAAC 59.099 50.000 32.45 25.86 38.94 2.01
237 238 1.277557 GTTGCAATGGGGCCACATTAA 59.722 47.619 32.45 21.29 38.94 1.40
238 239 0.901124 GTTGCAATGGGGCCACATTA 59.099 50.000 32.45 16.22 38.94 1.90
239 240 1.678724 GTTGCAATGGGGCCACATT 59.321 52.632 28.10 28.10 41.51 2.71
240 241 2.648143 CGTTGCAATGGGGCCACAT 61.648 57.895 17.02 17.02 30.39 3.21
241 242 3.301554 CGTTGCAATGGGGCCACA 61.302 61.111 11.97 11.97 30.39 4.17
242 243 4.740431 GCGTTGCAATGGGGCCAC 62.740 66.667 19.93 0.00 0.00 5.01
244 245 4.740431 GTGCGTTGCAATGGGGCC 62.740 66.667 19.93 0.00 41.47 5.80
246 247 4.418401 CCGTGCGTTGCAATGGGG 62.418 66.667 19.93 5.78 41.47 4.96
247 248 4.418401 CCCGTGCGTTGCAATGGG 62.418 66.667 19.93 9.83 45.52 4.00
258 259 0.171903 TACTAGAAGAACGCCCGTGC 59.828 55.000 0.00 0.00 0.00 5.34
259 260 2.865343 ATACTAGAAGAACGCCCGTG 57.135 50.000 0.00 0.00 0.00 4.94
260 261 3.813443 TCTATACTAGAAGAACGCCCGT 58.187 45.455 0.00 0.00 0.00 5.28
261 262 4.379603 CCATCTATACTAGAAGAACGCCCG 60.380 50.000 0.00 0.00 38.50 6.13
262 263 4.765856 TCCATCTATACTAGAAGAACGCCC 59.234 45.833 0.00 0.00 38.50 6.13
263 264 5.961396 TCCATCTATACTAGAAGAACGCC 57.039 43.478 0.00 0.00 38.50 5.68
264 265 6.207025 TCCTTCCATCTATACTAGAAGAACGC 59.793 42.308 0.00 0.00 38.50 4.84
265 266 7.747155 TCCTTCCATCTATACTAGAAGAACG 57.253 40.000 0.00 0.00 38.50 3.95
266 267 8.581578 CCTTCCTTCCATCTATACTAGAAGAAC 58.418 40.741 0.00 0.00 38.50 3.01
267 268 8.511969 TCCTTCCTTCCATCTATACTAGAAGAA 58.488 37.037 0.00 0.00 38.50 2.52
268 269 8.058405 TCCTTCCTTCCATCTATACTAGAAGA 57.942 38.462 0.00 0.00 38.50 2.87
269 270 7.947890 ACTCCTTCCTTCCATCTATACTAGAAG 59.052 40.741 0.00 0.00 38.50 2.85
270 271 7.827787 ACTCCTTCCTTCCATCTATACTAGAA 58.172 38.462 0.00 0.00 38.50 2.10
271 272 7.409408 ACTCCTTCCTTCCATCTATACTAGA 57.591 40.000 0.00 0.00 39.50 2.43
272 273 8.387813 ACTACTCCTTCCTTCCATCTATACTAG 58.612 40.741 0.00 0.00 0.00 2.57
273 274 8.290463 ACTACTCCTTCCTTCCATCTATACTA 57.710 38.462 0.00 0.00 0.00 1.82
274 275 7.169287 ACTACTCCTTCCTTCCATCTATACT 57.831 40.000 0.00 0.00 0.00 2.12
275 276 8.937207 TTACTACTCCTTCCTTCCATCTATAC 57.063 38.462 0.00 0.00 0.00 1.47
276 277 9.947189 TTTTACTACTCCTTCCTTCCATCTATA 57.053 33.333 0.00 0.00 0.00 1.31
277 278 8.855804 TTTTACTACTCCTTCCTTCCATCTAT 57.144 34.615 0.00 0.00 0.00 1.98
278 279 8.674925 TTTTTACTACTCCTTCCTTCCATCTA 57.325 34.615 0.00 0.00 0.00 1.98
279 280 7.569599 TTTTTACTACTCCTTCCTTCCATCT 57.430 36.000 0.00 0.00 0.00 2.90
346 347 1.153249 TTTCGGAGGGGCGCTATTG 60.153 57.895 7.64 0.00 0.00 1.90
360 361 2.094700 TCATCTGTCCTTCCGAGTTTCG 60.095 50.000 0.00 0.00 40.07 3.46
369 370 5.545658 TTGCGTTTATTCATCTGTCCTTC 57.454 39.130 0.00 0.00 0.00 3.46
489 492 1.575576 GCTGCCTGTCTGTCTTGCTG 61.576 60.000 0.00 0.00 0.00 4.41
1125 1138 2.622436 GTTCTGGAACCTTCGAGATGG 58.378 52.381 2.35 3.77 40.84 3.51
1145 1159 3.832720 GAGGCGCGGATCGAGAAGG 62.833 68.421 8.83 0.00 41.67 3.46
1168 1182 1.429463 ACAGATCGAGCGTTCCAAAC 58.571 50.000 0.00 0.00 0.00 2.93
1411 1427 0.822944 GGGAGGGGAGAGTAGCGTAC 60.823 65.000 0.00 0.00 0.00 3.67
1509 1526 0.472471 TCCCGGTTCAGTTCAAGCTT 59.528 50.000 0.00 0.00 0.00 3.74
1525 1542 5.699097 TGCATACACAAACTTAAGTTCCC 57.301 39.130 20.78 4.90 37.25 3.97
1583 1600 2.883386 CCCATCAAGATTAAGCTCCAGC 59.117 50.000 0.00 0.00 42.49 4.85
1611 1628 3.980775 GCAACATGTTTTAAGCACGTCAT 59.019 39.130 8.77 0.00 0.00 3.06
1613 1630 3.367607 TGCAACATGTTTTAAGCACGTC 58.632 40.909 15.16 0.00 0.00 4.34
1725 1742 2.021457 GGTTAATGTGCGGCCTACAAT 58.979 47.619 12.87 8.04 0.00 2.71
1843 1861 2.296471 CCAGTATACACCGACTCATCCC 59.704 54.545 5.50 0.00 0.00 3.85
1918 1937 6.533367 CCAGCTATGAAGAGACTAGAACAAAC 59.467 42.308 0.00 0.00 0.00 2.93
1975 1994 4.855340 TCTTGAAAACCCAGGGATCATAC 58.145 43.478 14.54 0.00 0.00 2.39
2026 2045 4.524714 AGTGACGCTGTATTCTATATGGCT 59.475 41.667 0.00 0.00 0.00 4.75
2042 2061 1.065851 GTCTCCTAGGCTTAGTGACGC 59.934 57.143 2.96 0.00 0.00 5.19
2047 2066 5.426833 ACAAATCATGTCTCCTAGGCTTAGT 59.573 40.000 2.96 0.00 37.96 2.24
2048 2067 5.923204 ACAAATCATGTCTCCTAGGCTTAG 58.077 41.667 2.96 0.00 37.96 2.18
2108 2127 1.896660 GGCCGGTTGCTTCACAGAA 60.897 57.895 1.90 0.00 40.92 3.02
2154 2623 6.051717 CCATGGTGAGTAATAACTTCAGGAG 58.948 44.000 2.57 0.00 35.56 3.69
2165 2634 7.072961 AGACATATCTTTCCCATGGTGAGTAAT 59.927 37.037 11.73 5.15 0.00 1.89
2166 2635 6.386927 AGACATATCTTTCCCATGGTGAGTAA 59.613 38.462 11.73 0.00 0.00 2.24
2167 2636 5.905331 AGACATATCTTTCCCATGGTGAGTA 59.095 40.000 11.73 0.00 0.00 2.59
2175 2644 7.177878 ACAGAAAACAGACATATCTTTCCCAT 58.822 34.615 0.00 0.00 30.42 4.00
2248 2719 9.546428 AAGAAAAGAGGATAAAACCAAAACATG 57.454 29.630 0.00 0.00 0.00 3.21
2505 2978 7.571080 TCTCAATATGCAATGCAGTTGATAA 57.429 32.000 27.22 19.62 43.65 1.75
2708 3181 8.229253 ACCGTTGTATATATCAGTAAGTGTCA 57.771 34.615 0.00 0.00 0.00 3.58
2767 3240 5.613358 AGTTTACTGCAGTCAAGTTATGC 57.387 39.130 25.56 5.68 40.40 3.14
2807 3280 8.159344 ACTTTGTCTTCACTTTTCAGGATAAG 57.841 34.615 0.00 0.00 0.00 1.73
2818 3291 7.807907 CACAGTTTTACAACTTTGTCTTCACTT 59.192 33.333 0.00 0.00 40.66 3.16
3046 3520 7.496529 TCAGCACTCCACTTTAATTATATGC 57.503 36.000 0.00 0.00 0.00 3.14
3076 3550 7.389053 ACCACAAAAAGAGAACATCTCATACTC 59.611 37.037 9.82 0.00 45.73 2.59
3090 3564 6.018262 TGTTTCATCTACGACCACAAAAAGAG 60.018 38.462 0.00 0.00 0.00 2.85
3149 3623 5.938125 GGGATAACCGCATAAATATCAGTGT 59.062 40.000 0.00 0.00 36.97 3.55
3161 3635 3.908103 AGGTAATGTAGGGATAACCGCAT 59.092 43.478 0.00 0.00 46.96 4.73
3164 3638 5.245301 TCATCAGGTAATGTAGGGATAACCG 59.755 44.000 0.00 0.00 46.96 4.44
3190 3664 7.047891 AGTACTCACTGACAAAAGAACAATGA 58.952 34.615 0.00 0.00 32.25 2.57
3597 4072 1.340248 AGGTAGACACTGTGGTCAACG 59.660 52.381 13.09 0.00 40.29 4.10
3670 4145 7.476540 AGTAACACCCCAAGAAATAATTTCC 57.523 36.000 0.00 0.00 40.54 3.13
3728 4203 9.803315 CTAGAAGCACACAATTAGATACTGTAA 57.197 33.333 0.00 0.00 0.00 2.41
3784 4260 4.286297 TCACTCCGGATTTCAAATGTCT 57.714 40.909 3.57 0.00 0.00 3.41
3785 4261 4.215399 TGTTCACTCCGGATTTCAAATGTC 59.785 41.667 3.57 0.00 0.00 3.06
3786 4262 4.141287 TGTTCACTCCGGATTTCAAATGT 58.859 39.130 3.57 0.00 0.00 2.71
3787 4263 4.764679 TGTTCACTCCGGATTTCAAATG 57.235 40.909 3.57 0.00 0.00 2.32
3791 4267 2.552155 CCCTTGTTCACTCCGGATTTCA 60.552 50.000 3.57 0.00 0.00 2.69
3792 4268 2.084546 CCCTTGTTCACTCCGGATTTC 58.915 52.381 3.57 0.00 0.00 2.17
3795 4271 1.562672 CCCCCTTGTTCACTCCGGAT 61.563 60.000 3.57 0.00 0.00 4.18
3796 4272 2.221299 CCCCCTTGTTCACTCCGGA 61.221 63.158 2.93 2.93 0.00 5.14
3797 4273 1.562672 ATCCCCCTTGTTCACTCCGG 61.563 60.000 0.00 0.00 0.00 5.14
3798 4274 0.392998 CATCCCCCTTGTTCACTCCG 60.393 60.000 0.00 0.00 0.00 4.63
3799 4275 0.698818 ACATCCCCCTTGTTCACTCC 59.301 55.000 0.00 0.00 0.00 3.85
3800 4276 2.586648 AACATCCCCCTTGTTCACTC 57.413 50.000 0.00 0.00 31.87 3.51
4670 5147 1.136356 CGCGCCATACAACATTGCA 59.864 52.632 0.00 0.00 0.00 4.08
5151 5629 6.627395 ATGACTACGGATTTCAACAACAAA 57.373 33.333 0.00 0.00 0.00 2.83
5357 5835 6.455380 CGCAGTGGCAAAACAAAATATATTGG 60.455 38.462 0.00 0.00 41.24 3.16
5379 5857 1.608109 AGAATTGTGCACAATGACGCA 59.392 42.857 38.30 16.19 45.06 5.24
5380 5858 2.336554 AGAATTGTGCACAATGACGC 57.663 45.000 38.30 27.47 45.06 5.19
5382 5860 7.928908 TTTCTTTAGAATTGTGCACAATGAC 57.071 32.000 38.30 32.21 45.06 3.06
5420 5898 6.640518 AGATGCAGAACGTTAGAAAGGAATA 58.359 36.000 0.00 0.00 0.00 1.75
5426 5904 5.845985 CAAGAGATGCAGAACGTTAGAAA 57.154 39.130 0.00 0.00 0.00 2.52
5657 6140 8.082242 GGTTGCTTATCAAATAAAACTGTGACT 58.918 33.333 0.00 0.00 36.26 3.41
5715 6198 1.960689 GGGAACTGGTTTAGCAAAGCA 59.039 47.619 11.26 11.26 45.65 3.91
5781 6264 3.791245 TGTTACAGCAAAGCAAAAAGGG 58.209 40.909 0.00 0.00 0.00 3.95
5803 6286 6.073222 ACCGTTACAAAAGAATCATCACTGTC 60.073 38.462 0.00 0.00 0.00 3.51
5841 6325 3.840132 GGGTTGGGTGGGTTGGGT 61.840 66.667 0.00 0.00 0.00 4.51
5846 6330 1.850755 CTACAGGGGTTGGGTGGGT 60.851 63.158 0.00 0.00 0.00 4.51
5864 6667 2.880890 GGGTATGATGTTGCATGTCCTC 59.119 50.000 0.00 0.00 0.00 3.71
5982 6786 8.938906 TCTACAAGGAAACACGGATATTAAAAC 58.061 33.333 0.00 0.00 0.00 2.43
6005 6809 3.861840 CAACAAGAAGCTTCCGGATCTA 58.138 45.455 22.81 0.00 0.00 1.98
6038 6842 6.065374 TGTACCATCACCAAAATACAAGTGT 58.935 36.000 0.00 0.00 0.00 3.55
6153 6957 7.125792 AGTAGTGTTTACATAAGAGGATGGG 57.874 40.000 0.00 0.00 0.00 4.00
6177 6981 6.424176 TCGGCGACAATAATGAACAAATAA 57.576 33.333 4.99 0.00 0.00 1.40
6215 7019 2.440539 TCCTCAGAGCAAAGTTCGTC 57.559 50.000 0.00 0.00 0.00 4.20
6252 7059 6.092955 AGTAGTTCATAAACACAGTCCGAA 57.907 37.500 0.00 0.00 37.88 4.30
6258 7065 5.700832 TGGAGCAAGTAGTTCATAAACACAG 59.299 40.000 0.00 0.00 37.88 3.66
6277 7123 0.250770 AGAGGACGGGTTTTTGGAGC 60.251 55.000 0.00 0.00 0.00 4.70
6296 7142 1.758936 CATCCTGCAATCCAAGCTGA 58.241 50.000 0.00 0.00 33.39 4.26
6297 7143 0.102481 GCATCCTGCAATCCAAGCTG 59.898 55.000 0.00 0.00 44.26 4.24
6298 7144 2.501492 GCATCCTGCAATCCAAGCT 58.499 52.632 0.00 0.00 44.26 3.74
6315 7161 1.425412 CTTTCATGCAGGCAAGTTGC 58.575 50.000 19.87 19.87 44.08 4.17
6316 7162 1.425412 GCTTTCATGCAGGCAAGTTG 58.575 50.000 12.14 0.00 0.00 3.16
6317 7163 0.038892 CGCTTTCATGCAGGCAAGTT 60.039 50.000 12.14 0.00 0.00 2.66
6318 7164 1.582968 CGCTTTCATGCAGGCAAGT 59.417 52.632 12.14 0.00 0.00 3.16
6319 7165 1.153901 CCGCTTTCATGCAGGCAAG 60.154 57.895 6.38 6.38 0.00 4.01
6320 7166 2.638354 CCCGCTTTCATGCAGGCAA 61.638 57.895 0.00 0.00 0.00 4.52
6321 7167 3.063704 CCCGCTTTCATGCAGGCA 61.064 61.111 0.00 0.00 0.00 4.75
6322 7168 1.669999 ATTCCCGCTTTCATGCAGGC 61.670 55.000 0.00 0.00 30.94 4.85
6323 7169 0.383231 GATTCCCGCTTTCATGCAGG 59.617 55.000 0.00 0.00 32.06 4.85
6324 7170 0.028505 CGATTCCCGCTTTCATGCAG 59.971 55.000 0.00 0.00 0.00 4.41
6325 7171 2.097444 CGATTCCCGCTTTCATGCA 58.903 52.632 0.00 0.00 0.00 3.96
6335 7181 1.097547 AGCAATCCAAGCGATTCCCG 61.098 55.000 0.00 0.00 39.28 5.14
6336 7182 0.383231 CAGCAATCCAAGCGATTCCC 59.617 55.000 0.00 0.00 39.28 3.97
6337 7183 0.383231 CCAGCAATCCAAGCGATTCC 59.617 55.000 0.00 0.00 39.28 3.01
6338 7184 1.098050 ACCAGCAATCCAAGCGATTC 58.902 50.000 0.00 0.00 39.28 2.52
6339 7185 1.203052 CAACCAGCAATCCAAGCGATT 59.797 47.619 0.00 0.00 42.18 3.34
6340 7186 0.813184 CAACCAGCAATCCAAGCGAT 59.187 50.000 0.00 0.00 37.01 4.58
6341 7187 1.865788 GCAACCAGCAATCCAAGCGA 61.866 55.000 0.00 0.00 44.79 4.93
6342 7188 1.444895 GCAACCAGCAATCCAAGCG 60.445 57.895 0.00 0.00 44.79 4.68
6343 7189 4.584688 GCAACCAGCAATCCAAGC 57.415 55.556 0.00 0.00 44.79 4.01
6386 7232 9.003658 CAAAAAGTCTGATAAGAACTGTATGGT 57.996 33.333 0.00 0.00 0.00 3.55
6393 7245 8.964476 TGTTCTCAAAAAGTCTGATAAGAACT 57.036 30.769 11.74 0.00 31.63 3.01
6424 7276 5.163703 ACAAAACAGACGCATCAACACTTAA 60.164 36.000 0.00 0.00 0.00 1.85
6425 7277 4.334203 ACAAAACAGACGCATCAACACTTA 59.666 37.500 0.00 0.00 0.00 2.24
6496 7365 2.742053 GACTAAAGCACCATTCTCGCAA 59.258 45.455 0.00 0.00 0.00 4.85
6497 7366 2.289382 TGACTAAAGCACCATTCTCGCA 60.289 45.455 0.00 0.00 0.00 5.10
6499 7368 3.243877 CGATGACTAAAGCACCATTCTCG 59.756 47.826 0.00 0.00 0.00 4.04
6514 7383 4.261801 CCCCTAAAAACATGACGATGACT 58.738 43.478 0.00 0.00 33.36 3.41
6515 7384 4.007659 ACCCCTAAAAACATGACGATGAC 58.992 43.478 0.00 0.00 33.36 3.06
6521 7390 5.008911 ACAACGTAACCCCTAAAAACATGAC 59.991 40.000 0.00 0.00 0.00 3.06
6565 7449 2.428530 CTGGGCCTTTTTAGATTGGCTC 59.571 50.000 4.53 0.00 45.68 4.70
6589 7473 0.685097 TCCCGCTACAAGCAAAGTCT 59.315 50.000 0.00 0.00 42.58 3.24
6676 7563 3.726517 CTTGTTGGCCTCGCGTGG 61.727 66.667 22.48 22.48 0.00 4.94
6685 7572 1.678970 CCTGCTACCCCTTGTTGGC 60.679 63.158 0.00 0.00 0.00 4.52
6692 7579 3.309193 GGAGAATTTTTCCTGCTACCCCT 60.309 47.826 0.00 0.00 0.00 4.79
6693 7580 3.024547 GGAGAATTTTTCCTGCTACCCC 58.975 50.000 0.00 0.00 0.00 4.95
6694 7581 3.969553 AGGAGAATTTTTCCTGCTACCC 58.030 45.455 7.66 0.00 43.38 3.69
6695 7582 7.462571 TTTTAGGAGAATTTTTCCTGCTACC 57.537 36.000 16.71 0.00 44.65 3.18
6724 7611 7.799081 ACTATATTTTGTACTCTTGTACCCCC 58.201 38.462 0.00 0.00 46.19 5.40
6725 7612 9.676861 AAACTATATTTTGTACTCTTGTACCCC 57.323 33.333 0.00 0.00 46.19 4.95
6741 7628 8.135529 GCCGCTCTCCAAAAATAAACTATATTT 58.864 33.333 0.00 0.00 0.00 1.40
6742 7629 7.502561 AGCCGCTCTCCAAAAATAAACTATATT 59.497 33.333 0.00 0.00 0.00 1.28
6743 7630 6.998673 AGCCGCTCTCCAAAAATAAACTATAT 59.001 34.615 0.00 0.00 0.00 0.86
6744 7631 6.354130 AGCCGCTCTCCAAAAATAAACTATA 58.646 36.000 0.00 0.00 0.00 1.31
6745 7632 5.193679 AGCCGCTCTCCAAAAATAAACTAT 58.806 37.500 0.00 0.00 0.00 2.12
6746 7633 4.585879 AGCCGCTCTCCAAAAATAAACTA 58.414 39.130 0.00 0.00 0.00 2.24
6747 7634 3.421844 AGCCGCTCTCCAAAAATAAACT 58.578 40.909 0.00 0.00 0.00 2.66
6748 7635 3.850122 AGCCGCTCTCCAAAAATAAAC 57.150 42.857 0.00 0.00 0.00 2.01
6749 7636 5.968528 TTTAGCCGCTCTCCAAAAATAAA 57.031 34.783 0.00 0.00 0.00 1.40
6750 7637 5.678616 GCATTTAGCCGCTCTCCAAAAATAA 60.679 40.000 0.00 0.00 37.23 1.40
6751 7638 4.202010 GCATTTAGCCGCTCTCCAAAAATA 60.202 41.667 0.00 0.00 37.23 1.40
6752 7639 3.429410 GCATTTAGCCGCTCTCCAAAAAT 60.429 43.478 0.00 0.00 37.23 1.82
6753 7640 2.094752 GCATTTAGCCGCTCTCCAAAAA 60.095 45.455 0.00 0.00 37.23 1.94
6754 7641 1.472480 GCATTTAGCCGCTCTCCAAAA 59.528 47.619 0.00 0.00 37.23 2.44
6755 7642 1.094785 GCATTTAGCCGCTCTCCAAA 58.905 50.000 0.00 0.00 37.23 3.28
6756 7643 2.780595 GCATTTAGCCGCTCTCCAA 58.219 52.632 0.00 0.00 37.23 3.53
6757 7644 4.540153 GCATTTAGCCGCTCTCCA 57.460 55.556 0.00 0.00 37.23 3.86
6766 7653 2.446435 TGAACTTGGGAGGCATTTAGC 58.554 47.619 0.00 0.00 44.65 3.09
6767 7654 4.082125 AGTTGAACTTGGGAGGCATTTAG 58.918 43.478 0.00 0.00 0.00 1.85
6768 7655 4.112634 AGTTGAACTTGGGAGGCATTTA 57.887 40.909 0.00 0.00 0.00 1.40
6769 7656 2.962859 AGTTGAACTTGGGAGGCATTT 58.037 42.857 0.00 0.00 0.00 2.32
6770 7657 2.683211 AGTTGAACTTGGGAGGCATT 57.317 45.000 0.00 0.00 0.00 3.56
6771 7658 2.644798 AGTAGTTGAACTTGGGAGGCAT 59.355 45.455 1.97 0.00 0.00 4.40
6772 7659 2.054799 AGTAGTTGAACTTGGGAGGCA 58.945 47.619 1.97 0.00 0.00 4.75
6773 7660 2.861147 AGTAGTTGAACTTGGGAGGC 57.139 50.000 1.97 0.00 0.00 4.70
6780 7667 4.962155 ACTGCTAGCAAGTAGTTGAACTT 58.038 39.130 19.86 0.00 45.26 2.66
6781 7668 4.608948 ACTGCTAGCAAGTAGTTGAACT 57.391 40.909 19.86 2.37 45.26 3.01
6782 7669 6.780706 TTTACTGCTAGCAAGTAGTTGAAC 57.219 37.500 19.86 0.00 45.26 3.18
6783 7670 7.979444 ATTTTACTGCTAGCAAGTAGTTGAA 57.021 32.000 19.86 10.91 45.26 2.69
6784 7671 9.496873 TTTATTTTACTGCTAGCAAGTAGTTGA 57.503 29.630 19.86 5.77 45.26 3.18
6844 7731 6.258287 CACTCAAACATCTTTCATGCCAAAAA 59.742 34.615 0.00 0.00 0.00 1.94
6845 7732 5.754406 CACTCAAACATCTTTCATGCCAAAA 59.246 36.000 0.00 0.00 0.00 2.44
6846 7733 5.291178 CACTCAAACATCTTTCATGCCAAA 58.709 37.500 0.00 0.00 0.00 3.28
6847 7734 4.796946 GCACTCAAACATCTTTCATGCCAA 60.797 41.667 0.00 0.00 0.00 4.52
6848 7735 3.305539 GCACTCAAACATCTTTCATGCCA 60.306 43.478 0.00 0.00 0.00 4.92
6849 7736 3.248266 GCACTCAAACATCTTTCATGCC 58.752 45.455 0.00 0.00 0.00 4.40
6850 7737 2.912967 CGCACTCAAACATCTTTCATGC 59.087 45.455 0.00 0.00 0.00 4.06
6851 7738 3.910170 CACGCACTCAAACATCTTTCATG 59.090 43.478 0.00 0.00 0.00 3.07
6852 7739 3.814842 TCACGCACTCAAACATCTTTCAT 59.185 39.130 0.00 0.00 0.00 2.57
6853 7740 3.202097 TCACGCACTCAAACATCTTTCA 58.798 40.909 0.00 0.00 0.00 2.69
6854 7741 3.364366 CCTCACGCACTCAAACATCTTTC 60.364 47.826 0.00 0.00 0.00 2.62
6855 7742 2.549754 CCTCACGCACTCAAACATCTTT 59.450 45.455 0.00 0.00 0.00 2.52
6856 7743 2.146342 CCTCACGCACTCAAACATCTT 58.854 47.619 0.00 0.00 0.00 2.40
6857 7744 1.070758 ACCTCACGCACTCAAACATCT 59.929 47.619 0.00 0.00 0.00 2.90
6858 7745 1.461127 GACCTCACGCACTCAAACATC 59.539 52.381 0.00 0.00 0.00 3.06
6859 7746 1.512926 GACCTCACGCACTCAAACAT 58.487 50.000 0.00 0.00 0.00 2.71
6860 7747 0.531974 GGACCTCACGCACTCAAACA 60.532 55.000 0.00 0.00 0.00 2.83
6861 7748 1.557443 CGGACCTCACGCACTCAAAC 61.557 60.000 0.00 0.00 0.00 2.93
6862 7749 1.300620 CGGACCTCACGCACTCAAA 60.301 57.895 0.00 0.00 0.00 2.69
6863 7750 2.338620 CGGACCTCACGCACTCAA 59.661 61.111 0.00 0.00 0.00 3.02
6864 7751 2.910479 ACGGACCTCACGCACTCA 60.910 61.111 0.00 0.00 34.00 3.41
6865 7752 2.430921 CACGGACCTCACGCACTC 60.431 66.667 0.00 0.00 34.00 3.51
6866 7753 4.664677 GCACGGACCTCACGCACT 62.665 66.667 0.00 0.00 34.00 4.40
6869 7756 4.980805 TTGGCACGGACCTCACGC 62.981 66.667 0.00 0.00 34.00 5.34
6870 7757 1.234615 AAATTGGCACGGACCTCACG 61.235 55.000 0.00 0.00 37.36 4.35
6871 7758 0.958822 AAAATTGGCACGGACCTCAC 59.041 50.000 0.00 0.00 0.00 3.51
6872 7759 1.243902 GAAAATTGGCACGGACCTCA 58.756 50.000 0.00 0.00 0.00 3.86
6873 7760 1.200020 CTGAAAATTGGCACGGACCTC 59.800 52.381 0.00 0.00 0.00 3.85
6874 7761 1.247567 CTGAAAATTGGCACGGACCT 58.752 50.000 0.00 0.00 0.00 3.85
6875 7762 0.388520 GCTGAAAATTGGCACGGACC 60.389 55.000 0.00 0.00 0.00 4.46
6876 7763 0.598065 AGCTGAAAATTGGCACGGAC 59.402 50.000 0.00 0.00 0.00 4.79
6877 7764 0.881118 GAGCTGAAAATTGGCACGGA 59.119 50.000 0.00 0.00 0.00 4.69
6878 7765 0.454957 CGAGCTGAAAATTGGCACGG 60.455 55.000 0.00 0.00 36.68 4.94
6879 7766 0.238289 ACGAGCTGAAAATTGGCACG 59.762 50.000 0.00 0.00 43.32 5.34
6880 7767 2.422276 AACGAGCTGAAAATTGGCAC 57.578 45.000 0.00 0.00 0.00 5.01
6881 7768 2.545532 CCAAACGAGCTGAAAATTGGCA 60.546 45.455 0.00 0.00 31.86 4.92
6882 7769 2.061028 CCAAACGAGCTGAAAATTGGC 58.939 47.619 0.00 0.00 31.86 4.52
6883 7770 3.641437 TCCAAACGAGCTGAAAATTGG 57.359 42.857 0.00 0.00 38.88 3.16
6884 7771 4.358851 TGTTCCAAACGAGCTGAAAATTG 58.641 39.130 0.00 0.00 0.00 2.32
6885 7772 4.647424 TGTTCCAAACGAGCTGAAAATT 57.353 36.364 0.00 0.00 0.00 1.82
6886 7773 4.321230 GGATGTTCCAAACGAGCTGAAAAT 60.321 41.667 0.00 0.00 36.28 1.82
6887 7774 3.004315 GGATGTTCCAAACGAGCTGAAAA 59.996 43.478 0.00 0.00 36.28 2.29
6888 7775 2.552315 GGATGTTCCAAACGAGCTGAAA 59.448 45.455 0.00 0.00 36.28 2.69
6889 7776 2.151202 GGATGTTCCAAACGAGCTGAA 58.849 47.619 0.00 0.00 36.28 3.02
6890 7777 1.808411 GGATGTTCCAAACGAGCTGA 58.192 50.000 0.00 0.00 36.28 4.26
6891 7778 0.443869 CGGATGTTCCAAACGAGCTG 59.556 55.000 0.00 0.00 35.91 4.24
6892 7779 0.320374 TCGGATGTTCCAAACGAGCT 59.680 50.000 0.00 0.00 35.91 4.09
6893 7780 0.721718 CTCGGATGTTCCAAACGAGC 59.278 55.000 0.00 0.00 43.42 5.03
6895 7782 2.673043 GCTACTCGGATGTTCCAAACGA 60.673 50.000 0.00 0.00 35.91 3.85
6896 7783 1.659098 GCTACTCGGATGTTCCAAACG 59.341 52.381 0.00 0.00 35.91 3.60
6897 7784 2.930682 GAGCTACTCGGATGTTCCAAAC 59.069 50.000 0.00 0.00 35.91 2.93
6898 7785 2.832129 AGAGCTACTCGGATGTTCCAAA 59.168 45.455 0.00 0.00 35.91 3.28
6899 7786 2.427453 GAGAGCTACTCGGATGTTCCAA 59.573 50.000 0.00 0.00 35.91 3.53
6900 7787 2.025155 GAGAGCTACTCGGATGTTCCA 58.975 52.381 0.00 0.00 35.91 3.53
6901 7788 2.785713 GAGAGCTACTCGGATGTTCC 57.214 55.000 0.00 0.00 35.84 3.62
6926 7813 9.227777 AGTAAACTTATCCGCACTCTAATTTTT 57.772 29.630 0.00 0.00 0.00 1.94
6927 7814 8.788325 AGTAAACTTATCCGCACTCTAATTTT 57.212 30.769 0.00 0.00 0.00 1.82
6931 7818 9.309516 CAAATAGTAAACTTATCCGCACTCTAA 57.690 33.333 0.00 0.00 0.00 2.10
6932 7819 8.472413 ACAAATAGTAAACTTATCCGCACTCTA 58.528 33.333 0.00 0.00 0.00 2.43
6933 7820 7.277981 CACAAATAGTAAACTTATCCGCACTCT 59.722 37.037 0.00 0.00 0.00 3.24
6934 7821 7.399523 CACAAATAGTAAACTTATCCGCACTC 58.600 38.462 0.00 0.00 0.00 3.51
6935 7822 6.183360 GCACAAATAGTAAACTTATCCGCACT 60.183 38.462 0.00 0.00 0.00 4.40
6936 7823 5.963586 GCACAAATAGTAAACTTATCCGCAC 59.036 40.000 0.00 0.00 0.00 5.34
6937 7824 5.644206 TGCACAAATAGTAAACTTATCCGCA 59.356 36.000 0.00 0.00 0.00 5.69
6938 7825 5.963586 GTGCACAAATAGTAAACTTATCCGC 59.036 40.000 13.17 0.00 0.00 5.54
6939 7826 7.303634 AGTGCACAAATAGTAAACTTATCCG 57.696 36.000 21.04 0.00 0.00 4.18
6944 7831 9.502091 TCAGAATAGTGCACAAATAGTAAACTT 57.498 29.630 21.04 0.00 0.00 2.66
6945 7832 8.936864 GTCAGAATAGTGCACAAATAGTAAACT 58.063 33.333 21.04 2.87 0.00 2.66
6946 7833 8.936864 AGTCAGAATAGTGCACAAATAGTAAAC 58.063 33.333 21.04 6.63 0.00 2.01
6947 7834 9.151471 GAGTCAGAATAGTGCACAAATAGTAAA 57.849 33.333 21.04 0.00 0.00 2.01
6948 7835 8.311109 TGAGTCAGAATAGTGCACAAATAGTAA 58.689 33.333 21.04 0.00 0.00 2.24
6949 7836 7.836842 TGAGTCAGAATAGTGCACAAATAGTA 58.163 34.615 21.04 1.15 0.00 1.82
6950 7837 6.701340 TGAGTCAGAATAGTGCACAAATAGT 58.299 36.000 21.04 1.41 0.00 2.12
6951 7838 7.783090 ATGAGTCAGAATAGTGCACAAATAG 57.217 36.000 21.04 4.25 0.00 1.73
6952 7839 9.836864 ATAATGAGTCAGAATAGTGCACAAATA 57.163 29.630 21.04 2.81 0.00 1.40
6953 7840 8.743085 ATAATGAGTCAGAATAGTGCACAAAT 57.257 30.769 21.04 9.33 0.00 2.32
6954 7841 8.565896 AATAATGAGTCAGAATAGTGCACAAA 57.434 30.769 21.04 7.03 0.00 2.83
6955 7842 8.565896 AAATAATGAGTCAGAATAGTGCACAA 57.434 30.769 21.04 0.00 0.00 3.33
6956 7843 8.565896 AAAATAATGAGTCAGAATAGTGCACA 57.434 30.769 21.04 5.47 0.00 4.57
6979 7866 1.675552 GCGCCTATCAGCCCTAAAAA 58.324 50.000 0.00 0.00 0.00 1.94
6980 7867 3.396951 GCGCCTATCAGCCCTAAAA 57.603 52.632 0.00 0.00 0.00 1.52
6988 7875 3.188015 ATGCCCTGGCGCCTATCAG 62.188 63.158 29.70 16.59 45.51 2.90
6989 7876 3.170672 ATGCCCTGGCGCCTATCA 61.171 61.111 29.70 19.50 45.51 2.15
6990 7877 2.670934 CATGCCCTGGCGCCTATC 60.671 66.667 29.70 14.33 45.51 2.08
6991 7878 4.962836 GCATGCCCTGGCGCCTAT 62.963 66.667 29.70 11.17 45.51 2.57
7009 7896 2.824041 CGACCGGCCCAAATCTGG 60.824 66.667 0.00 0.00 43.10 3.86
7010 7897 3.508840 GCGACCGGCCCAAATCTG 61.509 66.667 0.00 0.00 34.80 2.90
7011 7898 4.028490 TGCGACCGGCCCAAATCT 62.028 61.111 0.00 0.00 42.61 2.40
7012 7899 3.810896 GTGCGACCGGCCCAAATC 61.811 66.667 0.00 0.00 42.61 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.