Multiple sequence alignment - TraesCS3A01G238600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G238600 chr3A 100.000 3924 0 0 1 3924 446263756 446267679 0.000000e+00 7247.0
1 TraesCS3A01G238600 chr3A 93.103 58 4 0 3019 3076 449511787 449511730 6.990000e-13 86.1
2 TraesCS3A01G238600 chr3A 87.931 58 7 0 3172 3229 692357714 692357771 7.040000e-08 69.4
3 TraesCS3A01G238600 chr3A 87.273 55 5 2 1791 1844 508173393 508173446 1.180000e-05 62.1
4 TraesCS3A01G238600 chr3B 86.632 1713 128 42 1 1643 428195196 428196877 0.000000e+00 1801.0
5 TraesCS3A01G238600 chr3B 94.522 785 29 7 2235 3019 428198342 428199112 0.000000e+00 1199.0
6 TraesCS3A01G238600 chr3B 92.737 179 5 2 2070 2240 428197281 428197459 6.510000e-63 252.0
7 TraesCS3A01G238600 chr3B 88.571 70 7 1 179 247 790589756 790589687 2.510000e-12 84.2
8 TraesCS3A01G238600 chr3B 91.379 58 4 1 3020 3077 792962868 792962812 1.170000e-10 78.7
9 TraesCS3A01G238600 chr3B 91.304 46 3 1 1796 1840 556718393 556718348 1.180000e-05 62.1
10 TraesCS3A01G238600 chr3D 93.539 1006 37 11 2022 3013 330487480 330488471 0.000000e+00 1472.0
11 TraesCS3A01G238600 chr3D 87.269 974 63 22 716 1643 330486194 330487152 0.000000e+00 1055.0
12 TraesCS3A01G238600 chr3D 93.820 356 18 4 324 677 330485845 330486198 2.080000e-147 532.0
13 TraesCS3A01G238600 chr3D 93.750 80 5 0 3100 3179 467490464 467490385 1.920000e-23 121.0
14 TraesCS3A01G238600 chr1D 87.186 757 55 18 3180 3899 143375445 143374694 0.000000e+00 822.0
15 TraesCS3A01G238600 chr5D 86.897 725 63 21 3201 3899 73792104 73791386 0.000000e+00 784.0
16 TraesCS3A01G238600 chr6D 90.710 183 14 2 3183 3365 422319063 422318884 1.410000e-59 241.0
17 TraesCS3A01G238600 chr7B 85.714 161 21 2 1798 1957 75585072 75584913 6.740000e-38 169.0
18 TraesCS3A01G238600 chr7B 92.063 63 5 0 3016 3078 668400452 668400514 5.400000e-14 89.8
19 TraesCS3A01G238600 chr5B 84.906 159 23 1 1800 1957 507193369 507193211 4.060000e-35 159.0
20 TraesCS3A01G238600 chr5B 83.333 162 23 3 1799 1957 512992336 512992176 3.160000e-31 147.0
21 TraesCS3A01G238600 chr4B 82.500 160 23 4 1799 1955 27253955 27253798 6.840000e-28 135.0
22 TraesCS3A01G238600 chr7D 81.761 159 26 3 1800 1957 149097368 149097212 3.180000e-26 130.0
23 TraesCS3A01G238600 chr1B 84.091 132 20 1 1825 1955 646503269 646503138 4.120000e-25 126.0
24 TraesCS3A01G238600 chr1B 94.118 51 3 0 3020 3070 49657523 49657573 1.170000e-10 78.7
25 TraesCS3A01G238600 chr2D 81.169 154 25 4 1807 1957 12290014 12289862 1.920000e-23 121.0
26 TraesCS3A01G238600 chr2D 89.831 59 6 0 3020 3078 4187120 4187178 4.200000e-10 76.8
27 TraesCS3A01G238600 chr2B 87.342 79 9 1 1799 1876 184953757 184953835 5.400000e-14 89.8
28 TraesCS3A01G238600 chr4A 97.917 48 1 0 3034 3081 645660269 645660222 2.510000e-12 84.2
29 TraesCS3A01G238600 chr6B 92.727 55 4 0 3015 3069 31971456 31971402 3.250000e-11 80.5
30 TraesCS3A01G238600 chr6B 90.323 62 5 1 3020 3081 48434689 48434629 3.250000e-11 80.5
31 TraesCS3A01G238600 chr6B 94.118 51 3 0 3020 3070 195962916 195962866 1.170000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G238600 chr3A 446263756 446267679 3923 False 7247.000000 7247 100.000000 1 3924 1 chr3A.!!$F1 3923
1 TraesCS3A01G238600 chr3B 428195196 428199112 3916 False 1084.000000 1801 91.297000 1 3019 3 chr3B.!!$F1 3018
2 TraesCS3A01G238600 chr3D 330485845 330488471 2626 False 1019.666667 1472 91.542667 324 3013 3 chr3D.!!$F1 2689
3 TraesCS3A01G238600 chr1D 143374694 143375445 751 True 822.000000 822 87.186000 3180 3899 1 chr1D.!!$R1 719
4 TraesCS3A01G238600 chr5D 73791386 73792104 718 True 784.000000 784 86.897000 3201 3899 1 chr5D.!!$R1 698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 730 0.370273 CACATGAAGCTCCGTTACGC 59.630 55.0 0.00 0.0 0.0 4.42 F
1450 1502 0.036164 TGTGGGTTCCCGTCTTCATG 59.964 55.0 3.27 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 2316 0.179032 CACGGGTGGCTGCCAATATA 60.179 55.0 25.23 0.0 34.18 0.86 R
3071 4234 0.037419 TTTGCGGGGTTCCTACGTAC 60.037 55.0 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.108194 TGTATGAAAGTCTGCAATTCATCTCT 58.892 34.615 15.69 2.07 41.52 3.10
52 53 5.391310 GCAATTCATCTCTGACGTGAAATGT 60.391 40.000 0.00 0.00 40.05 2.71
119 120 8.359642 TGTTGCTCATAATTTGCTTAACTTCTT 58.640 29.630 0.00 0.00 0.00 2.52
120 121 8.642020 GTTGCTCATAATTTGCTTAACTTCTTG 58.358 33.333 0.00 0.00 0.00 3.02
162 163 1.205460 AGGGTACAACGGGCCATCTT 61.205 55.000 4.39 0.00 0.00 2.40
172 173 2.092646 ACGGGCCATCTTGTTGCTATTA 60.093 45.455 4.39 0.00 0.00 0.98
181 183 7.814587 GCCATCTTGTTGCTATTAAAGAGTTTT 59.185 33.333 0.00 0.00 32.50 2.43
205 207 5.579384 TTAACACGGTACAATCAAAGTCG 57.421 39.130 0.00 0.00 0.00 4.18
206 208 3.102052 ACACGGTACAATCAAAGTCGT 57.898 42.857 0.00 0.00 0.00 4.34
208 210 3.492011 ACACGGTACAATCAAAGTCGTTC 59.508 43.478 0.00 0.00 0.00 3.95
210 212 3.492011 ACGGTACAATCAAAGTCGTTCAC 59.508 43.478 0.00 0.00 0.00 3.18
214 216 6.035650 CGGTACAATCAAAGTCGTTCACATAT 59.964 38.462 0.00 0.00 0.00 1.78
217 219 7.899178 ACAATCAAAGTCGTTCACATATACA 57.101 32.000 0.00 0.00 0.00 2.29
219 221 8.779303 ACAATCAAAGTCGTTCACATATACAAA 58.221 29.630 0.00 0.00 0.00 2.83
233 235 7.047891 CACATATACAAACATACACTCACCCT 58.952 38.462 0.00 0.00 0.00 4.34
250 252 2.129607 CCCTTATAAATACACGCGCGT 58.870 47.619 32.73 32.73 0.00 6.01
252 254 3.922240 CCCTTATAAATACACGCGCGTAT 59.078 43.478 37.24 29.37 33.43 3.06
259 261 4.627611 AATACACGCGCGTATATCCTAT 57.372 40.909 37.24 16.39 31.76 2.57
260 262 2.539346 ACACGCGCGTATATCCTATC 57.461 50.000 37.24 0.00 0.00 2.08
261 263 1.131883 ACACGCGCGTATATCCTATCC 59.868 52.381 37.24 0.00 0.00 2.59
264 266 2.216046 CGCGCGTATATCCTATCCCTA 58.784 52.381 24.19 0.00 0.00 3.53
265 267 2.032204 CGCGCGTATATCCTATCCCTAC 60.032 54.545 24.19 0.00 0.00 3.18
271 273 5.298777 GCGTATATCCTATCCCTACGAACAT 59.701 44.000 4.76 0.00 37.87 2.71
272 274 6.183360 GCGTATATCCTATCCCTACGAACATT 60.183 42.308 4.76 0.00 37.87 2.71
288 290 5.883328 GAACATTTTCGGAAGACAAAACC 57.117 39.130 0.00 0.00 41.84 3.27
297 299 2.875933 GGAAGACAAAACCGACACATCA 59.124 45.455 0.00 0.00 0.00 3.07
298 300 3.502211 GGAAGACAAAACCGACACATCAT 59.498 43.478 0.00 0.00 0.00 2.45
299 301 4.378459 GGAAGACAAAACCGACACATCATC 60.378 45.833 0.00 0.00 0.00 2.92
300 302 4.008074 AGACAAAACCGACACATCATCT 57.992 40.909 0.00 0.00 0.00 2.90
308 310 8.427012 CAAAACCGACACATCATCTTAAAATTG 58.573 33.333 0.00 0.00 0.00 2.32
310 312 7.630242 ACCGACACATCATCTTAAAATTGAT 57.370 32.000 0.00 0.00 0.00 2.57
311 313 8.731275 ACCGACACATCATCTTAAAATTGATA 57.269 30.769 0.00 0.00 0.00 2.15
322 324 9.199184 CATCTTAAAATTGATAAAGTCGTCACG 57.801 33.333 0.00 0.00 0.00 4.35
325 327 6.533819 AAAATTGATAAAGTCGTCACGTGA 57.466 33.333 15.76 15.76 0.00 4.35
335 337 4.552355 AGTCGTCACGTGAAAATGTATGA 58.448 39.130 21.95 4.29 0.00 2.15
339 341 5.062934 TCGTCACGTGAAAATGTATGATTCC 59.937 40.000 21.95 1.17 0.00 3.01
466 468 1.593933 TGTTAGAAACGACAACACGGC 59.406 47.619 0.00 0.00 37.61 5.68
492 495 1.201647 CCAGTTGGCTTTGCATGAGAG 59.798 52.381 0.00 0.00 0.00 3.20
496 499 1.171308 TGGCTTTGCATGAGAGAAGC 58.829 50.000 9.56 9.56 42.76 3.86
507 510 1.341209 TGAGAGAAGCTGCGAGACAAA 59.659 47.619 0.00 0.00 0.00 2.83
676 679 1.676746 TCCGGATCCTAGACGTGAAG 58.323 55.000 10.75 0.00 0.00 3.02
677 680 1.064906 TCCGGATCCTAGACGTGAAGT 60.065 52.381 10.75 0.00 0.00 3.01
678 681 6.093907 GATCCGGATCCTAGACGTGAAGTC 62.094 54.167 30.80 3.96 39.69 3.01
701 719 2.807967 ACACACGACAATCCACATGAAG 59.192 45.455 0.00 0.00 0.00 3.02
703 721 2.079158 CACGACAATCCACATGAAGCT 58.921 47.619 0.00 0.00 0.00 3.74
712 730 0.370273 CACATGAAGCTCCGTTACGC 59.630 55.000 0.00 0.00 0.00 4.42
728 746 1.237285 ACGCACTGCAGGGTTTCATC 61.237 55.000 19.18 0.00 0.00 2.92
752 770 0.529119 ACCAAGACACCAACGTCGTC 60.529 55.000 0.00 0.00 40.98 4.20
774 794 3.700038 CCAGTATACGTCTGTCCCTTTCT 59.300 47.826 0.00 0.00 0.00 2.52
775 795 4.440250 CCAGTATACGTCTGTCCCTTTCTG 60.440 50.000 0.00 0.00 0.00 3.02
801 821 6.543430 AGCTATTTTCTCATGTCTCTGTCT 57.457 37.500 0.00 0.00 0.00 3.41
806 826 5.398603 TTTCTCATGTCTCTGTCTCCTTC 57.601 43.478 0.00 0.00 0.00 3.46
854 890 2.607187 CCTATATAAACCTGGCGAGCG 58.393 52.381 0.00 0.00 0.00 5.03
856 892 2.902705 ATATAAACCTGGCGAGCGAA 57.097 45.000 0.00 0.00 0.00 4.70
1169 1219 1.466167 CAAGAACATGGCGTCCAAGAG 59.534 52.381 7.87 2.65 36.95 2.85
1250 1300 4.141711 TGTGCTCAAGGTTAGTCTCAAGTT 60.142 41.667 0.00 0.00 0.00 2.66
1256 1306 4.769859 AGGTTAGTCTCAAGTTCGTCTC 57.230 45.455 0.00 0.00 0.00 3.36
1276 1326 1.066093 GCTGCATTGCACACACACA 59.934 52.632 7.38 0.00 33.79 3.72
1288 1338 4.116961 GCACACACACACTTAGACTGTAA 58.883 43.478 0.00 0.00 0.00 2.41
1373 1425 4.823989 CACTCAAGAAAAGAGAACCACCAT 59.176 41.667 0.00 0.00 36.91 3.55
1374 1426 5.049129 CACTCAAGAAAAGAGAACCACCATC 60.049 44.000 0.00 0.00 36.91 3.51
1375 1427 5.163152 ACTCAAGAAAAGAGAACCACCATCT 60.163 40.000 0.00 0.00 36.91 2.90
1417 1469 6.575083 AAAAGAAGTATCATCGACGATGTG 57.425 37.500 31.06 14.08 40.55 3.21
1418 1470 4.902443 AGAAGTATCATCGACGATGTGT 57.098 40.909 31.06 23.75 40.55 3.72
1419 1471 5.250235 AGAAGTATCATCGACGATGTGTT 57.750 39.130 31.06 21.07 40.55 3.32
1420 1472 5.274718 AGAAGTATCATCGACGATGTGTTC 58.725 41.667 31.06 25.83 40.55 3.18
1421 1473 3.966154 AGTATCATCGACGATGTGTTCC 58.034 45.455 31.06 17.98 40.55 3.62
1422 1474 1.840181 ATCATCGACGATGTGTTCCG 58.160 50.000 31.06 9.79 40.55 4.30
1423 1475 0.524414 TCATCGACGATGTGTTCCGT 59.476 50.000 31.06 0.00 40.55 4.69
1428 1480 3.195041 ACGATGTGTTCCGTCTGTG 57.805 52.632 0.00 0.00 33.23 3.66
1436 1488 1.001520 TGTTCCGTCTGTGTATGTGGG 59.998 52.381 0.00 0.00 0.00 4.61
1448 1500 1.276989 GTATGTGGGTTCCCGTCTTCA 59.723 52.381 3.27 0.00 0.00 3.02
1449 1501 0.991920 ATGTGGGTTCCCGTCTTCAT 59.008 50.000 3.27 1.18 0.00 2.57
1450 1502 0.036164 TGTGGGTTCCCGTCTTCATG 59.964 55.000 3.27 0.00 0.00 3.07
1459 1511 5.393962 GTTCCCGTCTTCATGAAAATCTTG 58.606 41.667 9.88 0.00 0.00 3.02
1517 1581 4.616953 TCTTTTCCAACGAAAATGAAGGC 58.383 39.130 0.00 0.00 44.82 4.35
1519 1583 4.599047 TTTCCAACGAAAATGAAGGCAT 57.401 36.364 0.00 0.00 35.02 4.40
1521 1585 5.913137 TTCCAACGAAAATGAAGGCATAT 57.087 34.783 0.00 0.00 33.44 1.78
1522 1586 7.397892 TTTCCAACGAAAATGAAGGCATATA 57.602 32.000 0.00 0.00 35.02 0.86
1523 1587 7.581213 TTCCAACGAAAATGAAGGCATATAT 57.419 32.000 0.00 0.00 33.44 0.86
1525 1589 8.862325 TCCAACGAAAATGAAGGCATATATAT 57.138 30.769 0.00 0.00 33.44 0.86
1526 1590 9.295825 TCCAACGAAAATGAAGGCATATATATT 57.704 29.630 0.00 0.00 33.44 1.28
1577 1641 7.485418 TTGTTCTTTCGAAGTGCAAGTAATA 57.515 32.000 0.00 0.00 0.00 0.98
1579 1643 5.756950 TCTTTCGAAGTGCAAGTAATACG 57.243 39.130 0.00 0.00 0.00 3.06
1580 1644 5.224888 TCTTTCGAAGTGCAAGTAATACGT 58.775 37.500 0.00 0.00 0.00 3.57
1581 1645 6.380995 TCTTTCGAAGTGCAAGTAATACGTA 58.619 36.000 0.00 0.00 0.00 3.57
1582 1646 5.997732 TTCGAAGTGCAAGTAATACGTAC 57.002 39.130 0.00 0.00 0.00 3.67
1583 1647 5.300969 TCGAAGTGCAAGTAATACGTACT 57.699 39.130 0.00 0.00 45.48 2.73
1584 1648 6.421377 TCGAAGTGCAAGTAATACGTACTA 57.579 37.500 0.00 0.00 42.55 1.82
1585 1649 6.250819 TCGAAGTGCAAGTAATACGTACTAC 58.749 40.000 6.08 6.08 42.55 2.73
1586 1650 5.453587 CGAAGTGCAAGTAATACGTACTACC 59.546 44.000 10.39 0.00 42.55 3.18
1601 1665 2.896039 ACTACCAAGAGACAAGAGCCT 58.104 47.619 0.00 0.00 0.00 4.58
1624 1689 4.130118 CCTCCCCACAAAATAGATTCTCG 58.870 47.826 0.00 0.00 0.00 4.04
1640 1705 7.183580 AGATTCTCGAAGTTTTGTCTTCAAG 57.816 36.000 7.13 0.00 42.53 3.02
1641 1706 6.763610 AGATTCTCGAAGTTTTGTCTTCAAGT 59.236 34.615 7.13 0.00 42.53 3.16
1642 1707 6.737254 TTCTCGAAGTTTTGTCTTCAAGTT 57.263 33.333 7.13 0.00 42.53 2.66
1643 1708 7.837202 TTCTCGAAGTTTTGTCTTCAAGTTA 57.163 32.000 7.13 0.00 42.53 2.24
1644 1709 7.837202 TCTCGAAGTTTTGTCTTCAAGTTAA 57.163 32.000 7.13 0.00 42.53 2.01
1645 1710 8.259049 TCTCGAAGTTTTGTCTTCAAGTTAAA 57.741 30.769 7.13 0.00 42.53 1.52
1646 1711 8.889717 TCTCGAAGTTTTGTCTTCAAGTTAAAT 58.110 29.630 7.13 0.00 42.53 1.40
1647 1712 9.503427 CTCGAAGTTTTGTCTTCAAGTTAAATT 57.497 29.630 7.13 0.00 42.53 1.82
1648 1713 9.849166 TCGAAGTTTTGTCTTCAAGTTAAATTT 57.151 25.926 0.00 0.00 42.53 1.82
1684 1749 9.213799 TCACCAAATTTATAGAAAAATGCCAAC 57.786 29.630 0.00 0.00 0.00 3.77
1685 1750 8.997323 CACCAAATTTATAGAAAAATGCCAACA 58.003 29.630 0.00 0.00 0.00 3.33
1686 1751 9.737844 ACCAAATTTATAGAAAAATGCCAACAT 57.262 25.926 0.00 0.00 38.49 2.71
1769 1961 7.654022 TTTGTTTGGTATTGTCTCTTCCTTT 57.346 32.000 0.00 0.00 0.00 3.11
1772 1964 5.576563 TTGGTATTGTCTCTTCCTTTGGA 57.423 39.130 0.00 0.00 0.00 3.53
1778 1970 4.815533 TGTCTCTTCCTTTGGAGAGATG 57.184 45.455 3.99 5.09 37.85 2.90
1784 1998 6.900186 TCTCTTCCTTTGGAGAGATGTATCTT 59.100 38.462 0.00 0.00 37.25 2.40
1795 2009 2.135933 GATGTATCTTGTGCGCTACCC 58.864 52.381 9.73 0.00 0.00 3.69
1801 2015 1.349259 CTTGTGCGCTACCCGTGTAC 61.349 60.000 9.73 0.00 38.93 2.90
1802 2016 1.808531 TTGTGCGCTACCCGTGTACT 61.809 55.000 9.73 0.00 39.17 2.73
1803 2017 1.515736 GTGCGCTACCCGTGTACTC 60.516 63.158 9.73 0.00 39.71 2.59
1804 2018 2.103736 GCGCTACCCGTGTACTCC 59.896 66.667 0.00 0.00 39.71 3.85
1805 2019 2.803479 CGCTACCCGTGTACTCCC 59.197 66.667 0.00 0.00 0.00 4.30
1806 2020 1.751927 CGCTACCCGTGTACTCCCT 60.752 63.158 0.00 0.00 0.00 4.20
1807 2021 1.722636 CGCTACCCGTGTACTCCCTC 61.723 65.000 0.00 0.00 0.00 4.30
1808 2022 1.390383 GCTACCCGTGTACTCCCTCC 61.390 65.000 0.00 0.00 0.00 4.30
1809 2023 1.077501 TACCCGTGTACTCCCTCCG 60.078 63.158 0.00 0.00 0.00 4.63
1810 2024 1.852157 TACCCGTGTACTCCCTCCGT 61.852 60.000 0.00 0.00 0.00 4.69
1811 2025 1.980772 CCCGTGTACTCCCTCCGTT 60.981 63.158 0.00 0.00 0.00 4.44
1812 2026 1.509923 CCGTGTACTCCCTCCGTTC 59.490 63.158 0.00 0.00 0.00 3.95
1813 2027 0.964358 CCGTGTACTCCCTCCGTTCT 60.964 60.000 0.00 0.00 0.00 3.01
1814 2028 0.886563 CGTGTACTCCCTCCGTTCTT 59.113 55.000 0.00 0.00 0.00 2.52
1815 2029 2.086869 CGTGTACTCCCTCCGTTCTTA 58.913 52.381 0.00 0.00 0.00 2.10
1816 2030 2.489329 CGTGTACTCCCTCCGTTCTTAA 59.511 50.000 0.00 0.00 0.00 1.85
1817 2031 3.057315 CGTGTACTCCCTCCGTTCTTAAA 60.057 47.826 0.00 0.00 0.00 1.52
1818 2032 4.381292 CGTGTACTCCCTCCGTTCTTAAAT 60.381 45.833 0.00 0.00 0.00 1.40
1819 2033 5.163622 CGTGTACTCCCTCCGTTCTTAAATA 60.164 44.000 0.00 0.00 0.00 1.40
1820 2034 6.460676 CGTGTACTCCCTCCGTTCTTAAATAT 60.461 42.308 0.00 0.00 0.00 1.28
1821 2035 7.255242 CGTGTACTCCCTCCGTTCTTAAATATA 60.255 40.741 0.00 0.00 0.00 0.86
1822 2036 8.416329 GTGTACTCCCTCCGTTCTTAAATATAA 58.584 37.037 0.00 0.00 0.00 0.98
1823 2037 8.980596 TGTACTCCCTCCGTTCTTAAATATAAA 58.019 33.333 0.00 0.00 0.00 1.40
1824 2038 9.254133 GTACTCCCTCCGTTCTTAAATATAAAC 57.746 37.037 0.00 0.00 0.00 2.01
1825 2039 8.087303 ACTCCCTCCGTTCTTAAATATAAACT 57.913 34.615 0.00 0.00 0.00 2.66
1826 2040 8.546322 ACTCCCTCCGTTCTTAAATATAAACTT 58.454 33.333 0.00 0.00 0.00 2.66
1827 2041 9.392259 CTCCCTCCGTTCTTAAATATAAACTTT 57.608 33.333 0.00 0.00 0.00 2.66
1828 2042 9.169592 TCCCTCCGTTCTTAAATATAAACTTTG 57.830 33.333 0.00 0.00 0.00 2.77
1829 2043 8.953313 CCCTCCGTTCTTAAATATAAACTTTGT 58.047 33.333 0.00 0.00 0.00 2.83
1892 2106 6.091123 ACATTTTCGAGTGTAGATTAACGC 57.909 37.500 0.00 0.00 0.00 4.84
1893 2107 5.636121 ACATTTTCGAGTGTAGATTAACGCA 59.364 36.000 0.00 0.00 32.18 5.24
1894 2108 6.312918 ACATTTTCGAGTGTAGATTAACGCAT 59.687 34.615 0.00 0.00 32.18 4.73
1895 2109 6.715344 TTTTCGAGTGTAGATTAACGCATT 57.285 33.333 0.00 0.00 32.18 3.56
1896 2110 6.715344 TTTCGAGTGTAGATTAACGCATTT 57.285 33.333 0.00 0.00 32.18 2.32
1897 2111 6.715344 TTCGAGTGTAGATTAACGCATTTT 57.285 33.333 0.00 0.00 32.18 1.82
1898 2112 7.815398 TTCGAGTGTAGATTAACGCATTTTA 57.185 32.000 0.00 0.00 32.18 1.52
1899 2113 7.445900 TCGAGTGTAGATTAACGCATTTTAG 57.554 36.000 0.00 0.00 32.18 1.85
1900 2114 7.031372 TCGAGTGTAGATTAACGCATTTTAGT 58.969 34.615 0.00 0.00 32.18 2.24
1901 2115 7.219535 TCGAGTGTAGATTAACGCATTTTAGTC 59.780 37.037 0.00 0.00 32.18 2.59
1902 2116 7.514747 CGAGTGTAGATTAACGCATTTTAGTCC 60.515 40.741 0.00 0.00 32.18 3.85
1903 2117 6.255020 AGTGTAGATTAACGCATTTTAGTCCG 59.745 38.462 0.00 0.00 32.18 4.79
1904 2118 6.035327 GTGTAGATTAACGCATTTTAGTCCGT 59.965 38.462 0.00 0.00 35.14 4.69
1905 2119 5.713822 AGATTAACGCATTTTAGTCCGTC 57.286 39.130 0.00 0.00 32.89 4.79
1906 2120 5.416947 AGATTAACGCATTTTAGTCCGTCT 58.583 37.500 0.00 0.00 32.89 4.18
1907 2121 4.914312 TTAACGCATTTTAGTCCGTCTG 57.086 40.909 0.00 0.00 32.89 3.51
1908 2122 2.450609 ACGCATTTTAGTCCGTCTGT 57.549 45.000 0.00 0.00 0.00 3.41
1909 2123 3.581024 ACGCATTTTAGTCCGTCTGTA 57.419 42.857 0.00 0.00 0.00 2.74
1910 2124 3.508762 ACGCATTTTAGTCCGTCTGTAG 58.491 45.455 0.00 0.00 0.00 2.74
1911 2125 3.057033 ACGCATTTTAGTCCGTCTGTAGT 60.057 43.478 0.00 0.00 0.00 2.73
1912 2126 3.546670 CGCATTTTAGTCCGTCTGTAGTC 59.453 47.826 0.00 0.00 0.00 2.59
1913 2127 4.674623 CGCATTTTAGTCCGTCTGTAGTCT 60.675 45.833 0.00 0.00 0.00 3.24
1914 2128 5.448225 CGCATTTTAGTCCGTCTGTAGTCTA 60.448 44.000 0.00 0.00 0.00 2.59
1915 2129 6.505272 GCATTTTAGTCCGTCTGTAGTCTAT 58.495 40.000 0.00 0.00 0.00 1.98
1916 2130 7.519488 CGCATTTTAGTCCGTCTGTAGTCTATA 60.519 40.741 0.00 0.00 0.00 1.31
1917 2131 8.133627 GCATTTTAGTCCGTCTGTAGTCTATAA 58.866 37.037 0.00 0.00 0.00 0.98
1954 2168 9.063615 ACAAAGGCTTATATTTAATAACGGAGG 57.936 33.333 0.00 0.00 0.00 4.30
1955 2169 8.512138 CAAAGGCTTATATTTAATAACGGAGGG 58.488 37.037 0.00 0.00 0.00 4.30
1956 2170 7.563724 AGGCTTATATTTAATAACGGAGGGA 57.436 36.000 0.00 0.00 0.00 4.20
1957 2171 7.981142 AGGCTTATATTTAATAACGGAGGGAA 58.019 34.615 0.00 0.00 0.00 3.97
1958 2172 7.881751 AGGCTTATATTTAATAACGGAGGGAAC 59.118 37.037 0.00 0.00 0.00 3.62
1959 2173 7.662669 GGCTTATATTTAATAACGGAGGGAACA 59.337 37.037 0.00 0.00 0.00 3.18
1960 2174 8.718734 GCTTATATTTAATAACGGAGGGAACAG 58.281 37.037 0.00 0.00 0.00 3.16
1961 2175 9.774413 CTTATATTTAATAACGGAGGGAACAGT 57.226 33.333 0.00 0.00 0.00 3.55
1976 2190 6.014647 AGGGAACAGTATATATGCCGAAGTA 58.985 40.000 0.00 0.00 0.00 2.24
1977 2191 6.153000 AGGGAACAGTATATATGCCGAAGTAG 59.847 42.308 0.00 0.00 0.00 2.57
1992 2206 5.106673 GCCGAAGTAGAGTGCATTAAAAACT 60.107 40.000 0.00 0.00 0.00 2.66
2023 2237 7.851387 AATTCCACACCAAAAATAAAAACGT 57.149 28.000 0.00 0.00 0.00 3.99
2037 2284 2.596553 AAACGTTCCCCTGACACGCA 62.597 55.000 0.00 0.00 37.44 5.24
2039 2286 2.110213 GTTCCCCTGACACGCACA 59.890 61.111 0.00 0.00 0.00 4.57
2054 2302 2.261345 CGCACACATAAAAATGCTGGG 58.739 47.619 0.00 0.00 35.88 4.45
2068 2316 3.675348 TGCTGGGGATGAAGAATCAAT 57.325 42.857 0.00 0.00 39.49 2.57
2146 2410 1.318158 GGCCCTGTTCAGCATTCCTG 61.318 60.000 0.00 0.00 43.17 3.86
2214 2486 4.337763 GCTCATTTACGAGTTTCTGCATG 58.662 43.478 0.00 0.00 35.33 4.06
2255 3415 2.098280 TCGTAGAGTAGTCTAGTCGCGT 59.902 50.000 22.26 7.15 35.87 6.01
2268 3428 1.129437 AGTCGCGTTTACTACTCGTCC 59.871 52.381 5.77 0.00 36.40 4.79
2372 3532 4.814294 AAGACGGCGGCATCGACC 62.814 66.667 18.30 0.00 42.49 4.79
2383 3543 3.782443 ATCGACCCCAAGTCCGGC 61.782 66.667 0.00 0.00 43.08 6.13
2925 4085 5.545527 GATCATTAAAGATCACGCATAGCG 58.454 41.667 14.30 10.11 44.85 4.26
2951 4114 3.831614 CGTACGTACGCAGTTGCA 58.168 55.556 32.36 0.00 37.78 4.08
3019 4182 6.810911 ACATGTAGCTTAGGTATCTGTCAAG 58.189 40.000 0.00 0.00 0.00 3.02
3020 4183 5.854010 TGTAGCTTAGGTATCTGTCAAGG 57.146 43.478 0.00 0.00 0.00 3.61
3021 4184 3.828875 AGCTTAGGTATCTGTCAAGGC 57.171 47.619 0.00 0.00 0.00 4.35
3022 4185 2.101582 AGCTTAGGTATCTGTCAAGGCG 59.898 50.000 0.00 0.00 0.00 5.52
3023 4186 2.100916 GCTTAGGTATCTGTCAAGGCGA 59.899 50.000 0.00 0.00 0.00 5.54
3024 4187 3.797184 GCTTAGGTATCTGTCAAGGCGAG 60.797 52.174 0.00 0.00 0.00 5.03
3025 4188 0.461961 AGGTATCTGTCAAGGCGAGC 59.538 55.000 0.00 0.00 0.00 5.03
3026 4189 0.872021 GGTATCTGTCAAGGCGAGCG 60.872 60.000 0.00 0.00 0.00 5.03
3027 4190 0.100682 GTATCTGTCAAGGCGAGCGA 59.899 55.000 0.00 0.00 0.00 4.93
3028 4191 1.032794 TATCTGTCAAGGCGAGCGAT 58.967 50.000 0.00 0.00 0.00 4.58
3029 4192 1.032794 ATCTGTCAAGGCGAGCGATA 58.967 50.000 0.00 0.00 0.00 2.92
3030 4193 0.100682 TCTGTCAAGGCGAGCGATAC 59.899 55.000 0.00 0.00 0.00 2.24
3031 4194 1.202973 CTGTCAAGGCGAGCGATACG 61.203 60.000 0.00 0.00 0.00 3.06
3054 4217 4.413800 GTGCGCCGGCCGAAATTT 62.414 61.111 30.73 0.00 40.02 1.82
3055 4218 4.109693 TGCGCCGGCCGAAATTTC 62.110 61.111 30.73 8.20 40.02 2.17
3064 4227 2.398036 CGAAATTTCGGCCGGTCG 59.602 61.111 28.73 25.52 46.30 4.79
3065 4228 2.099638 GAAATTTCGGCCGGTCGC 59.900 61.111 26.77 4.28 0.00 5.19
3066 4229 2.670251 AAATTTCGGCCGGTCGCA 60.670 55.556 26.77 11.43 40.31 5.10
3067 4230 2.844224 GAAATTTCGGCCGGTCGCAC 62.844 60.000 26.77 9.83 40.31 5.34
3077 4240 2.560861 GGTCGCACCGTGTACGTA 59.439 61.111 3.57 0.00 37.74 3.57
3078 4241 1.512734 GGTCGCACCGTGTACGTAG 60.513 63.158 0.00 0.00 37.74 3.51
3079 4242 1.512734 GTCGCACCGTGTACGTAGG 60.513 63.158 0.00 0.00 37.74 3.18
3080 4243 1.670730 TCGCACCGTGTACGTAGGA 60.671 57.895 6.37 0.00 37.74 2.94
3081 4244 1.209898 CGCACCGTGTACGTAGGAA 59.790 57.895 6.37 0.00 37.74 3.36
3082 4245 1.067199 CGCACCGTGTACGTAGGAAC 61.067 60.000 6.37 0.33 37.74 3.62
3083 4246 0.733909 GCACCGTGTACGTAGGAACC 60.734 60.000 6.37 0.00 37.74 3.62
3084 4247 0.109132 CACCGTGTACGTAGGAACCC 60.109 60.000 6.37 0.00 37.74 4.11
3085 4248 1.250840 ACCGTGTACGTAGGAACCCC 61.251 60.000 6.37 0.00 37.74 4.95
3086 4249 1.137404 CGTGTACGTAGGAACCCCG 59.863 63.158 0.00 0.00 34.17 5.73
3087 4250 1.153765 GTGTACGTAGGAACCCCGC 60.154 63.158 0.00 0.00 37.58 6.13
3088 4251 1.606025 TGTACGTAGGAACCCCGCA 60.606 57.895 0.00 0.00 37.58 5.69
3089 4252 1.184322 TGTACGTAGGAACCCCGCAA 61.184 55.000 0.00 0.00 37.58 4.85
3090 4253 0.037419 GTACGTAGGAACCCCGCAAA 60.037 55.000 0.00 0.00 37.58 3.68
3091 4254 0.683973 TACGTAGGAACCCCGCAAAA 59.316 50.000 0.00 0.00 37.58 2.44
3092 4255 0.179023 ACGTAGGAACCCCGCAAAAA 60.179 50.000 0.00 0.00 37.58 1.94
3114 4277 1.787012 AAAAGCACCGTGTACGTAGG 58.213 50.000 0.00 0.00 37.74 3.18
3115 4278 0.961019 AAAGCACCGTGTACGTAGGA 59.039 50.000 6.37 0.00 37.74 2.94
3116 4279 1.180029 AAGCACCGTGTACGTAGGAT 58.820 50.000 6.37 0.00 37.74 3.24
3117 4280 1.180029 AGCACCGTGTACGTAGGATT 58.820 50.000 6.37 0.00 37.74 3.01
3118 4281 1.133790 AGCACCGTGTACGTAGGATTC 59.866 52.381 6.37 0.00 37.74 2.52
3119 4282 1.818850 CACCGTGTACGTAGGATTCG 58.181 55.000 6.37 2.89 37.74 3.34
3120 4283 0.099436 ACCGTGTACGTAGGATTCGC 59.901 55.000 6.37 0.00 37.74 4.70
3121 4284 0.379669 CCGTGTACGTAGGATTCGCT 59.620 55.000 0.00 0.00 37.74 4.93
3122 4285 1.596464 CCGTGTACGTAGGATTCGCTC 60.596 57.143 0.00 0.00 37.74 5.03
3123 4286 1.596464 CGTGTACGTAGGATTCGCTCC 60.596 57.143 0.00 0.00 38.28 4.70
3133 4296 2.728922 GGATTCGCTCCGTACTAACTG 58.271 52.381 0.00 0.00 33.29 3.16
3134 4297 2.117910 GATTCGCTCCGTACTAACTGC 58.882 52.381 0.00 0.00 0.00 4.40
3135 4298 0.883153 TTCGCTCCGTACTAACTGCA 59.117 50.000 0.00 0.00 0.00 4.41
3136 4299 0.169672 TCGCTCCGTACTAACTGCAC 59.830 55.000 0.00 0.00 0.00 4.57
3137 4300 0.109458 CGCTCCGTACTAACTGCACA 60.109 55.000 0.00 0.00 0.00 4.57
3138 4301 1.667756 CGCTCCGTACTAACTGCACAA 60.668 52.381 0.00 0.00 0.00 3.33
3139 4302 2.618053 GCTCCGTACTAACTGCACAAT 58.382 47.619 0.00 0.00 0.00 2.71
3140 4303 3.732774 CGCTCCGTACTAACTGCACAATA 60.733 47.826 0.00 0.00 0.00 1.90
3141 4304 4.369182 GCTCCGTACTAACTGCACAATAT 58.631 43.478 0.00 0.00 0.00 1.28
3142 4305 4.209288 GCTCCGTACTAACTGCACAATATG 59.791 45.833 0.00 0.00 0.00 1.78
3156 4319 4.747810 CACAATATGCCTTTCTTCCCAAC 58.252 43.478 0.00 0.00 0.00 3.77
3157 4320 4.463891 CACAATATGCCTTTCTTCCCAACT 59.536 41.667 0.00 0.00 0.00 3.16
3158 4321 4.463891 ACAATATGCCTTTCTTCCCAACTG 59.536 41.667 0.00 0.00 0.00 3.16
3159 4322 1.260544 ATGCCTTTCTTCCCAACTGC 58.739 50.000 0.00 0.00 0.00 4.40
3160 4323 0.185901 TGCCTTTCTTCCCAACTGCT 59.814 50.000 0.00 0.00 0.00 4.24
3161 4324 1.332195 GCCTTTCTTCCCAACTGCTT 58.668 50.000 0.00 0.00 0.00 3.91
3162 4325 1.270826 GCCTTTCTTCCCAACTGCTTC 59.729 52.381 0.00 0.00 0.00 3.86
3163 4326 1.537202 CCTTTCTTCCCAACTGCTTCG 59.463 52.381 0.00 0.00 0.00 3.79
3164 4327 0.951558 TTTCTTCCCAACTGCTTCGC 59.048 50.000 0.00 0.00 0.00 4.70
3165 4328 0.108585 TTCTTCCCAACTGCTTCGCT 59.891 50.000 0.00 0.00 0.00 4.93
3166 4329 0.973632 TCTTCCCAACTGCTTCGCTA 59.026 50.000 0.00 0.00 0.00 4.26
3167 4330 1.066858 TCTTCCCAACTGCTTCGCTAG 60.067 52.381 0.00 0.00 0.00 3.42
3205 4368 7.710044 ACAGAATTGCTAACTCACATCTAGATG 59.290 37.037 27.63 27.63 44.15 2.90
3240 4403 8.451748 GGATGTCTCATCTAAGTTTTTAACCAC 58.548 37.037 9.16 0.00 0.00 4.16
3271 4434 3.483922 CACGCTGTAAATTTCGTGCAAAA 59.516 39.130 14.64 0.00 44.20 2.44
3280 4443 1.238625 TTCGTGCAAAACCCCGATCC 61.239 55.000 0.00 0.00 0.00 3.36
3335 4498 0.526739 GTTCTGTTTGCCCGCGTTTT 60.527 50.000 4.92 0.00 0.00 2.43
3366 4529 2.465860 TTATCGGCCCAATATGTCGG 57.534 50.000 0.00 0.00 0.00 4.79
3404 4567 2.028930 ACGGCCTGTTTGTTTGTTTTCA 60.029 40.909 0.00 0.00 0.00 2.69
3415 4578 8.279103 TGTTTGTTTGTTTTCATTGTGTCTTTC 58.721 29.630 0.00 0.00 0.00 2.62
3429 4592 1.002069 TCTTTCATGGGCTGGTGGAT 58.998 50.000 0.00 0.00 0.00 3.41
3441 4604 1.208776 CTGGTGGATGTCATGCTGAGA 59.791 52.381 5.87 0.00 0.00 3.27
3460 4623 0.680921 AATGTGGCAGGAACGATGGG 60.681 55.000 0.00 0.00 0.00 4.00
3469 4632 0.321653 GGAACGATGGGCTTGTGAGT 60.322 55.000 0.00 0.00 0.00 3.41
3473 4636 1.021390 CGATGGGCTTGTGAGTGTCC 61.021 60.000 0.00 0.00 0.00 4.02
3479 4642 2.034685 GGGCTTGTGAGTGTCCTTTTTC 59.965 50.000 0.00 0.00 0.00 2.29
3481 4644 2.952310 GCTTGTGAGTGTCCTTTTTCCT 59.048 45.455 0.00 0.00 0.00 3.36
3482 4645 3.381590 GCTTGTGAGTGTCCTTTTTCCTT 59.618 43.478 0.00 0.00 0.00 3.36
3516 4679 3.063452 TGAGCGTTTCTGTGTTTTCTGTC 59.937 43.478 0.00 0.00 0.00 3.51
3517 4680 2.354821 AGCGTTTCTGTGTTTTCTGTCC 59.645 45.455 0.00 0.00 0.00 4.02
3625 4801 9.801873 TTATCCTTCAGTCTTTTTCTTTTTGTG 57.198 29.630 0.00 0.00 0.00 3.33
3628 4804 7.176690 TCCTTCAGTCTTTTTCTTTTTGTGTCT 59.823 33.333 0.00 0.00 0.00 3.41
3739 4938 8.664211 TGTTTTAAAAGTTTGTGAACACCTTT 57.336 26.923 0.00 2.92 38.26 3.11
3790 4989 6.369065 GGAACGATGTCTCATCTAAGTTTGTT 59.631 38.462 7.89 3.44 0.00 2.83
3793 4992 7.603651 ACGATGTCTCATCTAAGTTTGTTACT 58.396 34.615 7.89 0.00 39.32 2.24
3795 4994 7.755373 CGATGTCTCATCTAAGTTTGTTACTGA 59.245 37.037 7.89 0.00 37.12 3.41
3833 5032 3.526931 TTTCAAGTGCTAGATCCTCCG 57.473 47.619 0.00 0.00 0.00 4.63
3866 5065 4.092120 CGTTGTTTGTTTGTCGTGAATCA 58.908 39.130 0.00 0.00 0.00 2.57
3872 5071 8.689251 TGTTTGTTTGTCGTGAATCATTTTTA 57.311 26.923 0.00 0.00 0.00 1.52
3874 5073 9.777843 GTTTGTTTGTCGTGAATCATTTTTATC 57.222 29.630 0.00 0.00 0.00 1.75
3899 5098 9.079833 TCGTCCTATTTAGTTTCACTTTTATCG 57.920 33.333 0.00 0.00 0.00 2.92
3900 5099 8.325997 CGTCCTATTTAGTTTCACTTTTATCGG 58.674 37.037 0.00 0.00 0.00 4.18
3901 5100 9.159364 GTCCTATTTAGTTTCACTTTTATCGGT 57.841 33.333 0.00 0.00 0.00 4.69
3902 5101 9.158233 TCCTATTTAGTTTCACTTTTATCGGTG 57.842 33.333 0.00 0.00 35.06 4.94
3903 5102 8.943002 CCTATTTAGTTTCACTTTTATCGGTGT 58.057 33.333 0.00 0.00 35.26 4.16
3906 5105 7.789273 TTAGTTTCACTTTTATCGGTGTTGA 57.211 32.000 0.00 0.00 35.26 3.18
3907 5106 6.300354 AGTTTCACTTTTATCGGTGTTGAG 57.700 37.500 0.00 0.00 35.26 3.02
3908 5107 5.238650 AGTTTCACTTTTATCGGTGTTGAGG 59.761 40.000 0.00 0.00 35.26 3.86
3909 5108 4.610605 TCACTTTTATCGGTGTTGAGGA 57.389 40.909 0.00 0.00 35.26 3.71
3910 5109 4.963373 TCACTTTTATCGGTGTTGAGGAA 58.037 39.130 0.00 0.00 35.26 3.36
3911 5110 4.753107 TCACTTTTATCGGTGTTGAGGAAC 59.247 41.667 0.00 0.00 35.26 3.62
3912 5111 3.744426 ACTTTTATCGGTGTTGAGGAACG 59.256 43.478 0.00 0.00 34.49 3.95
3913 5112 3.389925 TTTATCGGTGTTGAGGAACGT 57.610 42.857 0.00 0.00 34.49 3.99
3914 5113 4.517952 TTTATCGGTGTTGAGGAACGTA 57.482 40.909 0.00 0.00 34.49 3.57
3915 5114 2.649331 ATCGGTGTTGAGGAACGTAG 57.351 50.000 0.00 0.00 34.49 3.51
3917 5116 2.503331 TCGGTGTTGAGGAACGTAGTA 58.497 47.619 0.00 0.00 45.00 1.82
3918 5117 2.884012 TCGGTGTTGAGGAACGTAGTAA 59.116 45.455 0.00 0.00 45.00 2.24
3919 5118 3.507233 TCGGTGTTGAGGAACGTAGTAAT 59.493 43.478 0.00 0.00 45.00 1.89
3920 5119 4.022068 TCGGTGTTGAGGAACGTAGTAATT 60.022 41.667 0.00 0.00 45.00 1.40
3921 5120 4.687483 CGGTGTTGAGGAACGTAGTAATTT 59.313 41.667 0.00 0.00 45.00 1.82
3922 5121 5.164022 CGGTGTTGAGGAACGTAGTAATTTC 60.164 44.000 0.00 0.00 45.00 2.17
3923 5122 5.697633 GGTGTTGAGGAACGTAGTAATTTCA 59.302 40.000 0.00 0.00 45.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.061831 CACGTCAGAGATGAATTGCAGAC 59.938 47.826 0.00 0.00 0.00 3.51
40 41 7.665561 TCTTGATTTATGACATTTCACGTCA 57.334 32.000 0.00 0.00 46.77 4.35
95 96 7.814107 CCAAGAAGTTAAGCAAATTATGAGCAA 59.186 33.333 0.00 0.00 0.00 3.91
104 105 5.275067 TGCAACCAAGAAGTTAAGCAAAT 57.725 34.783 0.00 0.00 28.93 2.32
139 140 0.544833 TGGCCCGTTGTACCCTTAGA 60.545 55.000 0.00 0.00 0.00 2.10
144 145 1.029947 CAAGATGGCCCGTTGTACCC 61.030 60.000 0.00 0.00 0.00 3.69
181 183 6.036953 ACGACTTTGATTGTACCGTGTTAAAA 59.963 34.615 0.00 0.00 0.00 1.52
189 191 3.491639 TGTGAACGACTTTGATTGTACCG 59.508 43.478 0.00 0.00 0.00 4.02
190 192 5.607119 ATGTGAACGACTTTGATTGTACC 57.393 39.130 0.00 0.00 0.00 3.34
191 193 8.865978 TGTATATGTGAACGACTTTGATTGTAC 58.134 33.333 0.00 0.00 0.00 2.90
198 200 9.472995 GTATGTTTGTATATGTGAACGACTTTG 57.527 33.333 0.00 0.00 0.00 2.77
205 207 8.388103 GGTGAGTGTATGTTTGTATATGTGAAC 58.612 37.037 0.00 0.00 0.00 3.18
206 208 7.551262 GGGTGAGTGTATGTTTGTATATGTGAA 59.449 37.037 0.00 0.00 0.00 3.18
208 210 7.047891 AGGGTGAGTGTATGTTTGTATATGTG 58.952 38.462 0.00 0.00 0.00 3.21
210 212 9.778741 ATAAGGGTGAGTGTATGTTTGTATATG 57.221 33.333 0.00 0.00 0.00 1.78
219 221 7.924412 CGTGTATTTATAAGGGTGAGTGTATGT 59.076 37.037 0.00 0.00 0.00 2.29
233 235 6.554419 AGGATATACGCGCGTGTATTTATAA 58.446 36.000 39.76 26.76 36.48 0.98
240 242 2.352651 GGATAGGATATACGCGCGTGTA 59.647 50.000 42.78 38.90 0.00 2.90
277 279 4.452455 AGATGATGTGTCGGTTTTGTCTTC 59.548 41.667 0.00 0.00 0.00 2.87
278 280 4.389374 AGATGATGTGTCGGTTTTGTCTT 58.611 39.130 0.00 0.00 0.00 3.01
283 285 8.356657 TCAATTTTAAGATGATGTGTCGGTTTT 58.643 29.630 0.00 0.00 0.00 2.43
297 299 8.932791 ACGTGACGACTTTATCAATTTTAAGAT 58.067 29.630 13.70 0.00 0.00 2.40
298 300 8.218441 CACGTGACGACTTTATCAATTTTAAGA 58.782 33.333 13.70 0.00 0.00 2.10
299 301 8.218441 TCACGTGACGACTTTATCAATTTTAAG 58.782 33.333 15.76 0.00 0.00 1.85
300 302 8.074474 TCACGTGACGACTTTATCAATTTTAA 57.926 30.769 15.76 0.00 0.00 1.52
308 310 5.912528 ACATTTTCACGTGACGACTTTATC 58.087 37.500 19.90 0.00 0.00 1.75
310 312 6.641723 TCATACATTTTCACGTGACGACTTTA 59.358 34.615 19.90 6.11 0.00 1.85
311 313 5.464057 TCATACATTTTCACGTGACGACTTT 59.536 36.000 19.90 3.89 0.00 2.66
313 315 4.552355 TCATACATTTTCACGTGACGACT 58.448 39.130 19.90 1.23 0.00 4.18
317 319 5.448632 GGGGAATCATACATTTTCACGTGAC 60.449 44.000 19.90 1.27 0.00 3.67
318 320 4.638421 GGGGAATCATACATTTTCACGTGA 59.362 41.667 15.76 15.76 0.00 4.35
322 324 3.380004 TGCGGGGAATCATACATTTTCAC 59.620 43.478 0.00 0.00 0.00 3.18
325 327 8.469200 CAATATATGCGGGGAATCATACATTTT 58.531 33.333 0.00 0.00 0.00 1.82
335 337 4.519540 GCAAACAATATATGCGGGGAAT 57.480 40.909 0.00 0.00 0.00 3.01
427 429 2.158561 AAAGCTGTGGGCCATTTCGC 62.159 55.000 10.70 10.34 43.05 4.70
492 495 2.660362 CGTTTCTTTGTCTCGCAGCTTC 60.660 50.000 0.00 0.00 0.00 3.86
496 499 0.110644 GCCGTTTCTTTGTCTCGCAG 60.111 55.000 0.00 0.00 0.00 5.18
507 510 1.317613 TGATTGCTGTTGCCGTTTCT 58.682 45.000 0.00 0.00 38.71 2.52
676 679 3.021269 TGTGGATTGTCGTGTGTAGAC 57.979 47.619 0.00 0.00 38.98 2.59
677 680 3.257127 TCATGTGGATTGTCGTGTGTAGA 59.743 43.478 0.00 0.00 0.00 2.59
678 681 3.584834 TCATGTGGATTGTCGTGTGTAG 58.415 45.455 0.00 0.00 0.00 2.74
679 682 3.669251 TCATGTGGATTGTCGTGTGTA 57.331 42.857 0.00 0.00 0.00 2.90
691 709 1.403647 CGTAACGGAGCTTCATGTGGA 60.404 52.381 0.00 0.00 0.00 4.02
701 719 2.730672 CTGCAGTGCGTAACGGAGC 61.731 63.158 11.20 0.00 0.00 4.70
703 721 2.048597 CCTGCAGTGCGTAACGGA 60.049 61.111 13.81 0.00 0.00 4.69
712 730 2.082231 CAGAGATGAAACCCTGCAGTG 58.918 52.381 13.81 3.15 0.00 3.66
728 746 1.202533 ACGTTGGTGTCTTGGTCAGAG 60.203 52.381 0.00 0.00 29.34 3.35
752 770 3.700038 AGAAAGGGACAGACGTATACTGG 59.300 47.826 7.56 0.00 39.38 4.00
762 782 1.188219 AGCTCGCAGAAAGGGACAGA 61.188 55.000 0.00 0.00 34.09 3.41
774 794 4.115516 GAGACATGAGAAAATAGCTCGCA 58.884 43.478 0.00 0.00 35.15 5.10
775 795 4.208873 CAGAGACATGAGAAAATAGCTCGC 59.791 45.833 0.00 0.00 35.15 5.03
821 841 5.471257 GTTTATATAGGCGACCTGAGAAGG 58.529 45.833 8.44 0.00 34.61 3.46
823 843 5.145564 AGGTTTATATAGGCGACCTGAGAA 58.854 41.667 8.44 0.00 39.18 2.87
828 848 2.302157 GCCAGGTTTATATAGGCGACCT 59.698 50.000 3.87 3.87 41.23 3.85
854 890 2.809119 TGAGAGATATCGGACTCGCTTC 59.191 50.000 16.52 0.80 38.08 3.86
856 892 2.147958 GTGAGAGATATCGGACTCGCT 58.852 52.381 21.80 0.81 38.08 4.93
908 958 0.604780 CTGTGTAGCTTGCAGCCTGT 60.605 55.000 0.00 0.00 43.77 4.00
1250 1300 1.004679 TGCAATGCAGCTGAGACGA 60.005 52.632 20.43 0.00 33.32 4.20
1256 1306 0.937699 GTGTGTGTGCAATGCAGCTG 60.938 55.000 8.73 10.11 40.08 4.24
1295 1345 8.806429 ACATGAATTCAAGGTGATATGTACAA 57.194 30.769 13.09 0.00 0.00 2.41
1297 1347 8.668510 AGACATGAATTCAAGGTGATATGTAC 57.331 34.615 13.09 4.57 0.00 2.90
1299 1349 7.830697 TGAAGACATGAATTCAAGGTGATATGT 59.169 33.333 13.09 9.41 32.66 2.29
1396 1448 5.250235 ACACATCGTCGATGATACTTCTT 57.750 39.130 35.44 12.68 42.09 2.52
1412 1464 3.367932 CACATACACAGACGGAACACATC 59.632 47.826 0.00 0.00 0.00 3.06
1413 1465 3.325870 CACATACACAGACGGAACACAT 58.674 45.455 0.00 0.00 0.00 3.21
1414 1466 2.547007 CCACATACACAGACGGAACACA 60.547 50.000 0.00 0.00 0.00 3.72
1415 1467 2.066262 CCACATACACAGACGGAACAC 58.934 52.381 0.00 0.00 0.00 3.32
1417 1469 1.001633 ACCCACATACACAGACGGAAC 59.998 52.381 0.00 0.00 0.00 3.62
1418 1470 1.344065 ACCCACATACACAGACGGAA 58.656 50.000 0.00 0.00 0.00 4.30
1419 1471 1.274167 GAACCCACATACACAGACGGA 59.726 52.381 0.00 0.00 0.00 4.69
1420 1472 1.674817 GGAACCCACATACACAGACGG 60.675 57.143 0.00 0.00 0.00 4.79
1421 1473 1.722011 GGAACCCACATACACAGACG 58.278 55.000 0.00 0.00 0.00 4.18
1436 1488 5.393962 CAAGATTTTCATGAAGACGGGAAC 58.606 41.667 8.41 0.00 0.00 3.62
1488 1546 2.845363 TCGTTGGAAAAGAGGTACCC 57.155 50.000 8.74 0.00 29.01 3.69
1537 1601 8.504005 CGAAAGAACAAACTATGGAACTACAAT 58.496 33.333 0.00 0.00 0.00 2.71
1544 1608 6.512741 GCACTTCGAAAGAACAAACTATGGAA 60.513 38.462 0.00 0.00 46.92 3.53
1546 1610 5.147162 GCACTTCGAAAGAACAAACTATGG 58.853 41.667 0.00 0.00 46.92 2.74
1550 1614 4.156008 ACTTGCACTTCGAAAGAACAAACT 59.844 37.500 0.00 0.00 46.92 2.66
1555 1619 6.007677 CGTATTACTTGCACTTCGAAAGAAC 58.992 40.000 0.00 0.00 46.92 3.01
1558 1622 5.511088 ACGTATTACTTGCACTTCGAAAG 57.489 39.130 0.00 0.00 0.00 2.62
1561 1625 5.300969 AGTACGTATTACTTGCACTTCGA 57.699 39.130 0.00 0.00 37.85 3.71
1577 1641 3.190953 GCTCTTGTCTCTTGGTAGTACGT 59.809 47.826 0.00 0.00 0.00 3.57
1579 1643 3.764972 AGGCTCTTGTCTCTTGGTAGTAC 59.235 47.826 0.00 0.00 0.00 2.73
1580 1644 4.017808 GAGGCTCTTGTCTCTTGGTAGTA 58.982 47.826 7.40 0.00 41.44 1.82
1581 1645 2.829120 GAGGCTCTTGTCTCTTGGTAGT 59.171 50.000 7.40 0.00 41.44 2.73
1582 1646 2.167487 GGAGGCTCTTGTCTCTTGGTAG 59.833 54.545 15.23 0.00 43.95 3.18
1583 1647 2.180276 GGAGGCTCTTGTCTCTTGGTA 58.820 52.381 15.23 0.00 43.95 3.25
1584 1648 0.980423 GGAGGCTCTTGTCTCTTGGT 59.020 55.000 15.23 0.00 43.95 3.67
1585 1649 1.206849 GAGGAGGCTCTTGTCTCTTGG 59.793 57.143 15.23 0.00 43.95 3.61
1586 1650 1.206849 GGAGGAGGCTCTTGTCTCTTG 59.793 57.143 15.23 0.00 43.95 3.02
1601 1665 4.141711 CGAGAATCTATTTTGTGGGGAGGA 60.142 45.833 0.00 0.00 0.00 3.71
1637 1702 9.311916 TGGTGAAACATGAGAAAATTTAACTTG 57.688 29.630 0.00 0.00 39.98 3.16
1704 1769 9.797642 TCATGGAAAATGTACTCATAGCATATT 57.202 29.630 0.00 0.00 33.49 1.28
1705 1770 9.970553 ATCATGGAAAATGTACTCATAGCATAT 57.029 29.630 0.00 0.00 33.49 1.78
1706 1771 9.223099 CATCATGGAAAATGTACTCATAGCATA 57.777 33.333 0.00 0.00 33.49 3.14
1707 1772 7.940688 TCATCATGGAAAATGTACTCATAGCAT 59.059 33.333 0.00 0.00 33.49 3.79
1708 1773 7.281841 TCATCATGGAAAATGTACTCATAGCA 58.718 34.615 0.00 0.00 33.49 3.49
1709 1774 7.734924 TCATCATGGAAAATGTACTCATAGC 57.265 36.000 0.00 0.00 33.49 2.97
1738 1803 8.353423 AGAGACAATACCAAACAAATGCTAAT 57.647 30.769 0.00 0.00 0.00 1.73
1740 1805 7.094377 GGAAGAGACAATACCAAACAAATGCTA 60.094 37.037 0.00 0.00 0.00 3.49
1742 1807 5.863935 GGAAGAGACAATACCAAACAAATGC 59.136 40.000 0.00 0.00 0.00 3.56
1743 1808 7.219484 AGGAAGAGACAATACCAAACAAATG 57.781 36.000 0.00 0.00 0.00 2.32
1745 1810 7.417342 CCAAAGGAAGAGACAATACCAAACAAA 60.417 37.037 0.00 0.00 0.00 2.83
1748 1813 5.768164 TCCAAAGGAAGAGACAATACCAAAC 59.232 40.000 0.00 0.00 0.00 2.93
1750 1815 5.309543 TCTCCAAAGGAAGAGACAATACCAA 59.690 40.000 0.00 0.00 34.23 3.67
1758 1950 4.817318 ACATCTCTCCAAAGGAAGAGAC 57.183 45.455 13.61 0.00 38.12 3.36
1760 1952 6.729690 AGATACATCTCTCCAAAGGAAGAG 57.270 41.667 0.00 0.00 32.34 2.85
1769 1961 2.481969 GCGCACAAGATACATCTCTCCA 60.482 50.000 0.30 0.00 35.76 3.86
1772 1964 3.243569 GGTAGCGCACAAGATACATCTCT 60.244 47.826 11.47 0.00 35.76 3.10
1778 1970 0.179119 ACGGGTAGCGCACAAGATAC 60.179 55.000 11.47 1.28 32.71 2.24
1784 1998 2.203972 GAGTACACGGGTAGCGCACA 62.204 60.000 11.47 0.00 0.00 4.57
1795 2009 0.886563 AAGAACGGAGGGAGTACACG 59.113 55.000 0.00 0.00 0.00 4.49
1801 2015 8.959705 AAGTTTATATTTAAGAACGGAGGGAG 57.040 34.615 0.00 0.00 0.00 4.30
1802 2016 9.169592 CAAAGTTTATATTTAAGAACGGAGGGA 57.830 33.333 0.00 0.00 0.00 4.20
1803 2017 8.953313 ACAAAGTTTATATTTAAGAACGGAGGG 58.047 33.333 0.00 0.00 0.00 4.30
1866 2080 8.325997 GCGTTAATCTACACTCGAAAATGTATT 58.674 33.333 4.77 2.44 31.10 1.89
1867 2081 7.490079 TGCGTTAATCTACACTCGAAAATGTAT 59.510 33.333 4.77 0.00 31.10 2.29
1868 2082 6.807720 TGCGTTAATCTACACTCGAAAATGTA 59.192 34.615 4.36 4.36 0.00 2.29
1869 2083 5.636121 TGCGTTAATCTACACTCGAAAATGT 59.364 36.000 2.59 2.59 0.00 2.71
1870 2084 6.089920 TGCGTTAATCTACACTCGAAAATG 57.910 37.500 0.00 0.00 0.00 2.32
1871 2085 6.903883 ATGCGTTAATCTACACTCGAAAAT 57.096 33.333 0.00 0.00 0.00 1.82
1872 2086 6.715344 AATGCGTTAATCTACACTCGAAAA 57.285 33.333 0.00 0.00 0.00 2.29
1873 2087 6.715344 AAATGCGTTAATCTACACTCGAAA 57.285 33.333 0.00 0.00 0.00 3.46
1874 2088 6.715344 AAAATGCGTTAATCTACACTCGAA 57.285 33.333 0.00 0.00 0.00 3.71
1875 2089 7.031372 ACTAAAATGCGTTAATCTACACTCGA 58.969 34.615 0.00 0.00 0.00 4.04
1876 2090 7.218145 ACTAAAATGCGTTAATCTACACTCG 57.782 36.000 0.00 0.00 0.00 4.18
1877 2091 7.514747 CGGACTAAAATGCGTTAATCTACACTC 60.515 40.741 0.00 0.00 0.00 3.51
1878 2092 6.255020 CGGACTAAAATGCGTTAATCTACACT 59.745 38.462 0.00 0.00 0.00 3.55
1879 2093 6.035327 ACGGACTAAAATGCGTTAATCTACAC 59.965 38.462 0.00 0.00 44.95 2.90
1880 2094 6.101332 ACGGACTAAAATGCGTTAATCTACA 58.899 36.000 0.00 0.00 44.95 2.74
1881 2095 6.579491 ACGGACTAAAATGCGTTAATCTAC 57.421 37.500 0.00 0.00 44.95 2.59
1890 2104 3.508762 ACTACAGACGGACTAAAATGCG 58.491 45.455 0.00 0.00 39.62 4.73
1891 2105 4.745649 AGACTACAGACGGACTAAAATGC 58.254 43.478 0.00 0.00 0.00 3.56
1928 2142 9.063615 CCTCCGTTATTAAATATAAGCCTTTGT 57.936 33.333 0.00 0.00 0.00 2.83
1929 2143 8.512138 CCCTCCGTTATTAAATATAAGCCTTTG 58.488 37.037 0.00 0.00 0.00 2.77
1930 2144 8.442374 TCCCTCCGTTATTAAATATAAGCCTTT 58.558 33.333 0.00 0.00 0.00 3.11
1931 2145 7.981142 TCCCTCCGTTATTAAATATAAGCCTT 58.019 34.615 0.00 0.00 0.00 4.35
1932 2146 7.563724 TCCCTCCGTTATTAAATATAAGCCT 57.436 36.000 0.00 0.00 0.00 4.58
1933 2147 7.662669 TGTTCCCTCCGTTATTAAATATAAGCC 59.337 37.037 0.00 0.00 0.00 4.35
1934 2148 8.611654 TGTTCCCTCCGTTATTAAATATAAGC 57.388 34.615 0.00 0.00 0.00 3.09
1935 2149 9.774413 ACTGTTCCCTCCGTTATTAAATATAAG 57.226 33.333 0.00 0.00 0.00 1.73
1943 2157 8.472413 GCATATATACTGTTCCCTCCGTTATTA 58.528 37.037 0.00 0.00 0.00 0.98
1944 2158 7.328737 GCATATATACTGTTCCCTCCGTTATT 58.671 38.462 0.00 0.00 0.00 1.40
1945 2159 6.127140 GGCATATATACTGTTCCCTCCGTTAT 60.127 42.308 0.00 0.00 0.00 1.89
1946 2160 5.186409 GGCATATATACTGTTCCCTCCGTTA 59.814 44.000 0.00 0.00 0.00 3.18
1947 2161 4.020485 GGCATATATACTGTTCCCTCCGTT 60.020 45.833 0.00 0.00 0.00 4.44
1948 2162 3.514309 GGCATATATACTGTTCCCTCCGT 59.486 47.826 0.00 0.00 0.00 4.69
1949 2163 3.428999 CGGCATATATACTGTTCCCTCCG 60.429 52.174 0.00 0.00 0.00 4.63
1950 2164 3.767673 TCGGCATATATACTGTTCCCTCC 59.232 47.826 0.00 0.00 0.00 4.30
1951 2165 5.047235 ACTTCGGCATATATACTGTTCCCTC 60.047 44.000 0.00 0.00 0.00 4.30
1952 2166 4.838986 ACTTCGGCATATATACTGTTCCCT 59.161 41.667 0.00 0.00 0.00 4.20
1953 2167 5.148651 ACTTCGGCATATATACTGTTCCC 57.851 43.478 0.00 0.00 0.00 3.97
1954 2168 7.094291 ACTCTACTTCGGCATATATACTGTTCC 60.094 40.741 0.00 0.00 0.00 3.62
1955 2169 7.751348 CACTCTACTTCGGCATATATACTGTTC 59.249 40.741 0.00 0.00 0.00 3.18
1956 2170 7.594714 CACTCTACTTCGGCATATATACTGTT 58.405 38.462 0.00 0.00 0.00 3.16
1957 2171 6.349445 GCACTCTACTTCGGCATATATACTGT 60.349 42.308 0.00 0.00 0.00 3.55
1958 2172 6.030849 GCACTCTACTTCGGCATATATACTG 58.969 44.000 0.00 0.00 0.00 2.74
1959 2173 5.710567 TGCACTCTACTTCGGCATATATACT 59.289 40.000 0.00 0.00 0.00 2.12
1960 2174 5.950883 TGCACTCTACTTCGGCATATATAC 58.049 41.667 0.00 0.00 0.00 1.47
1961 2175 6.775594 ATGCACTCTACTTCGGCATATATA 57.224 37.500 0.00 0.00 42.86 0.86
1962 2176 5.667539 ATGCACTCTACTTCGGCATATAT 57.332 39.130 0.00 0.00 42.86 0.86
1963 2177 5.468540 AATGCACTCTACTTCGGCATATA 57.531 39.130 0.00 0.00 43.80 0.86
1964 2178 4.342862 AATGCACTCTACTTCGGCATAT 57.657 40.909 0.00 0.00 43.80 1.78
1968 2182 4.939509 TTTTAATGCACTCTACTTCGGC 57.060 40.909 0.00 0.00 0.00 5.54
1992 2206 3.616956 TTTGGTGTGGAATTTTGTGCA 57.383 38.095 0.00 0.00 0.00 4.57
2023 2237 2.050836 ATGTGTGCGTGTCAGGGGAA 62.051 55.000 0.00 0.00 0.00 3.97
2037 2284 4.352009 TCATCCCCAGCATTTTTATGTGT 58.648 39.130 0.00 0.00 0.00 3.72
2039 2286 5.271598 TCTTCATCCCCAGCATTTTTATGT 58.728 37.500 0.00 0.00 0.00 2.29
2054 2302 7.256286 GCTGCCAATATATTGATTCTTCATCC 58.744 38.462 24.17 5.50 40.14 3.51
2068 2316 0.179032 CACGGGTGGCTGCCAATATA 60.179 55.000 25.23 0.00 34.18 0.86
2319 3479 8.389779 TGTCAGCTGAATATAAACAAGAACAA 57.610 30.769 20.19 0.00 0.00 2.83
2329 3489 2.434336 ACCGCCTGTCAGCTGAATATAA 59.566 45.455 20.19 1.04 0.00 0.98
2800 3960 3.793144 GGCTGCGAGAAGTTGCGG 61.793 66.667 0.00 0.00 41.96 5.69
2890 4050 5.994250 TCTTTAATGATCTTGACCTGGAGG 58.006 41.667 0.00 0.00 42.17 4.30
3037 4200 4.413800 AAATTTCGGCCGGCGCAC 62.414 61.111 27.83 5.60 36.38 5.34
3038 4201 4.109693 GAAATTTCGGCCGGCGCA 62.110 61.111 27.83 6.00 36.38 6.09
3048 4211 2.099638 GCGACCGGCCGAAATTTC 59.900 61.111 30.73 13.29 34.80 2.17
3049 4212 2.670251 TGCGACCGGCCGAAATTT 60.670 55.556 30.73 4.57 42.61 1.82
3050 4213 3.428282 GTGCGACCGGCCGAAATT 61.428 61.111 30.73 7.60 42.61 1.82
3060 4223 1.512734 CTACGTACACGGTGCGACC 60.513 63.158 17.97 0.00 43.77 4.79
3061 4224 1.512734 CCTACGTACACGGTGCGAC 60.513 63.158 17.97 5.89 43.77 5.19
3062 4225 1.233950 TTCCTACGTACACGGTGCGA 61.234 55.000 17.97 0.00 43.77 5.10
3063 4226 1.067199 GTTCCTACGTACACGGTGCG 61.067 60.000 8.30 7.32 46.21 5.34
3064 4227 0.733909 GGTTCCTACGTACACGGTGC 60.734 60.000 8.30 0.00 44.95 5.01
3065 4228 0.109132 GGGTTCCTACGTACACGGTG 60.109 60.000 6.58 6.58 44.95 4.94
3066 4229 1.250840 GGGGTTCCTACGTACACGGT 61.251 60.000 6.72 0.00 44.95 4.83
3067 4230 1.512694 GGGGTTCCTACGTACACGG 59.487 63.158 6.72 0.00 44.95 4.94
3068 4231 1.137404 CGGGGTTCCTACGTACACG 59.863 63.158 0.00 0.00 46.33 4.49
3069 4232 1.153765 GCGGGGTTCCTACGTACAC 60.154 63.158 0.00 0.00 0.00 2.90
3070 4233 1.184322 TTGCGGGGTTCCTACGTACA 61.184 55.000 0.00 0.00 0.00 2.90
3071 4234 0.037419 TTTGCGGGGTTCCTACGTAC 60.037 55.000 0.00 0.00 0.00 3.67
3072 4235 0.683973 TTTTGCGGGGTTCCTACGTA 59.316 50.000 0.00 0.00 0.00 3.57
3073 4236 0.179023 TTTTTGCGGGGTTCCTACGT 60.179 50.000 0.00 0.00 0.00 3.57
3074 4237 2.631427 TTTTTGCGGGGTTCCTACG 58.369 52.632 0.00 0.00 0.00 3.51
3094 4257 2.137523 CCTACGTACACGGTGCTTTTT 58.862 47.619 8.30 0.00 44.95 1.94
3095 4258 1.340889 TCCTACGTACACGGTGCTTTT 59.659 47.619 8.30 0.00 44.95 2.27
3096 4259 0.961019 TCCTACGTACACGGTGCTTT 59.039 50.000 8.30 0.00 44.95 3.51
3097 4260 1.180029 ATCCTACGTACACGGTGCTT 58.820 50.000 8.30 0.00 44.95 3.91
3098 4261 1.133790 GAATCCTACGTACACGGTGCT 59.866 52.381 8.30 0.00 44.95 4.40
3099 4262 1.553308 GAATCCTACGTACACGGTGC 58.447 55.000 8.30 0.00 44.95 5.01
3100 4263 1.818850 CGAATCCTACGTACACGGTG 58.181 55.000 6.58 6.58 44.95 4.94
3101 4264 0.099436 GCGAATCCTACGTACACGGT 59.901 55.000 6.72 0.00 44.95 4.83
3102 4265 0.379669 AGCGAATCCTACGTACACGG 59.620 55.000 6.72 0.00 44.95 4.94
3103 4266 1.596464 GGAGCGAATCCTACGTACACG 60.596 57.143 0.00 0.00 45.64 4.49
3104 4267 2.116787 GGAGCGAATCCTACGTACAC 57.883 55.000 0.00 0.00 45.64 2.90
3108 4271 3.915575 ACGGAGCGAATCCTACGT 58.084 55.556 3.69 3.69 46.95 3.57
3113 4276 2.728922 CAGTTAGTACGGAGCGAATCC 58.271 52.381 0.00 0.00 45.64 3.01
3114 4277 2.117910 GCAGTTAGTACGGAGCGAATC 58.882 52.381 0.00 0.00 0.00 2.52
3115 4278 1.475280 TGCAGTTAGTACGGAGCGAAT 59.525 47.619 0.00 0.00 0.00 3.34
3116 4279 0.883153 TGCAGTTAGTACGGAGCGAA 59.117 50.000 0.00 0.00 0.00 4.70
3117 4280 0.169672 GTGCAGTTAGTACGGAGCGA 59.830 55.000 0.00 0.00 0.00 4.93
3118 4281 0.109458 TGTGCAGTTAGTACGGAGCG 60.109 55.000 0.00 0.00 35.35 5.03
3119 4282 2.074547 TTGTGCAGTTAGTACGGAGC 57.925 50.000 0.00 0.00 35.35 4.70
3120 4283 5.890110 CATATTGTGCAGTTAGTACGGAG 57.110 43.478 0.00 0.00 35.35 4.63
3134 4297 4.463891 AGTTGGGAAGAAAGGCATATTGTG 59.536 41.667 0.00 0.00 0.00 3.33
3135 4298 4.463891 CAGTTGGGAAGAAAGGCATATTGT 59.536 41.667 0.00 0.00 0.00 2.71
3136 4299 4.678840 GCAGTTGGGAAGAAAGGCATATTG 60.679 45.833 0.00 0.00 0.00 1.90
3137 4300 3.448660 GCAGTTGGGAAGAAAGGCATATT 59.551 43.478 0.00 0.00 0.00 1.28
3138 4301 3.026694 GCAGTTGGGAAGAAAGGCATAT 58.973 45.455 0.00 0.00 0.00 1.78
3139 4302 2.041620 AGCAGTTGGGAAGAAAGGCATA 59.958 45.455 0.00 0.00 0.00 3.14
3140 4303 1.203100 AGCAGTTGGGAAGAAAGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
3141 4304 0.185901 AGCAGTTGGGAAGAAAGGCA 59.814 50.000 0.00 0.00 0.00 4.75
3142 4305 1.270826 GAAGCAGTTGGGAAGAAAGGC 59.729 52.381 0.00 0.00 0.00 4.35
3143 4306 1.537202 CGAAGCAGTTGGGAAGAAAGG 59.463 52.381 0.00 0.00 0.00 3.11
3144 4307 2.977405 CGAAGCAGTTGGGAAGAAAG 57.023 50.000 0.00 0.00 0.00 2.62
3172 4335 7.319646 TGTGAGTTAGCAATTCTGTTGTTTTT 58.680 30.769 0.00 0.00 0.00 1.94
3173 4336 6.862209 TGTGAGTTAGCAATTCTGTTGTTTT 58.138 32.000 0.00 0.00 0.00 2.43
3174 4337 6.449635 TGTGAGTTAGCAATTCTGTTGTTT 57.550 33.333 0.00 0.00 0.00 2.83
3175 4338 6.488006 AGATGTGAGTTAGCAATTCTGTTGTT 59.512 34.615 0.00 0.00 0.00 2.83
3176 4339 6.000219 AGATGTGAGTTAGCAATTCTGTTGT 59.000 36.000 0.00 0.00 0.00 3.32
3177 4340 6.492007 AGATGTGAGTTAGCAATTCTGTTG 57.508 37.500 0.00 0.00 0.00 3.33
3178 4341 7.615403 TCTAGATGTGAGTTAGCAATTCTGTT 58.385 34.615 0.00 0.00 0.00 3.16
3213 4376 8.160765 TGGTTAAAAACTTAGATGAGACATCCA 58.839 33.333 7.93 0.00 0.00 3.41
3232 4395 3.259876 AGCGTGTAGATCCAGTGGTTAAA 59.740 43.478 9.54 0.00 0.00 1.52
3240 4403 5.276395 CGAAATTTACAGCGTGTAGATCCAG 60.276 44.000 0.00 0.00 33.92 3.86
3280 4443 1.082756 GACAGAAAACACAGCGCCG 60.083 57.895 2.29 0.00 0.00 6.46
3349 4512 0.250295 CACCGACATATTGGGCCGAT 60.250 55.000 11.88 11.88 32.82 4.18
3366 4529 4.746309 TGCCCCCTCATGCAGCAC 62.746 66.667 0.00 0.00 32.77 4.40
3389 4552 7.721286 AAGACACAATGAAAACAAACAAACA 57.279 28.000 0.00 0.00 0.00 2.83
3404 4567 2.173519 CCAGCCCATGAAAGACACAAT 58.826 47.619 0.00 0.00 0.00 2.71
3415 4578 0.106369 ATGACATCCACCAGCCCATG 60.106 55.000 0.00 0.00 0.00 3.66
3429 4592 1.271488 TGCCACATTCTCAGCATGACA 60.271 47.619 0.00 0.00 42.56 3.58
3441 4604 0.680921 CCCATCGTTCCTGCCACATT 60.681 55.000 0.00 0.00 0.00 2.71
3460 4623 2.952310 AGGAAAAAGGACACTCACAAGC 59.048 45.455 0.00 0.00 0.00 4.01
3755 4954 8.432805 AGATGAGACATCGTTCCCTATAAAAAT 58.567 33.333 0.00 0.00 0.00 1.82
3764 4963 4.657436 ACTTAGATGAGACATCGTTCCC 57.343 45.455 0.00 0.00 0.00 3.97
3820 5019 0.687757 ACAAGGCGGAGGATCTAGCA 60.688 55.000 0.00 0.00 39.66 3.49
3824 5023 1.201429 ACCAACAAGGCGGAGGATCT 61.201 55.000 0.00 0.00 43.14 2.75
3833 5032 1.135228 ACAAACAACGACCAACAAGGC 60.135 47.619 0.00 0.00 43.14 4.35
3899 5098 5.697633 TGAAATTACTACGTTCCTCAACACC 59.302 40.000 0.00 0.00 32.14 4.16
3900 5099 6.774354 TGAAATTACTACGTTCCTCAACAC 57.226 37.500 0.00 0.00 32.14 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.