Multiple sequence alignment - TraesCS3A01G238400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G238400 chr3A 100.000 7580 0 0 1 7580 445871636 445864057 0.000000e+00 13998.0
1 TraesCS3A01G238400 chr3A 90.426 94 9 0 2629 2722 624450029 624449936 2.870000e-24 124.0
2 TraesCS3A01G238400 chr3D 91.067 3045 136 43 2738 5746 330271480 330268536 0.000000e+00 3991.0
3 TraesCS3A01G238400 chr3D 90.239 1629 74 35 417 1992 330275302 330273706 0.000000e+00 2049.0
4 TraesCS3A01G238400 chr3D 89.242 1227 65 27 5754 6971 330268496 330267328 0.000000e+00 1472.0
5 TraesCS3A01G238400 chr3D 85.320 797 71 17 1980 2745 330273679 330272898 0.000000e+00 782.0
6 TraesCS3A01G238400 chr3D 87.500 616 64 6 6967 7570 485205433 485206047 0.000000e+00 699.0
7 TraesCS3A01G238400 chr3D 95.198 354 17 0 1 354 330276164 330275811 1.850000e-155 560.0
8 TraesCS3A01G238400 chr3D 87.654 243 19 6 7339 7571 432653841 432653600 9.690000e-69 272.0
9 TraesCS3A01G238400 chr3D 88.542 96 8 3 3429 3524 330272505 330272413 6.220000e-21 113.0
10 TraesCS3A01G238400 chr3B 88.032 1738 87 42 443 2142 428098723 428097069 0.000000e+00 1945.0
11 TraesCS3A01G238400 chr3B 92.333 1200 58 9 4558 5746 428091429 428090253 0.000000e+00 1676.0
12 TraesCS3A01G238400 chr3B 91.182 1100 69 9 2770 3862 428094790 428093712 0.000000e+00 1469.0
13 TraesCS3A01G238400 chr3B 93.248 859 34 14 5754 6606 428090213 428089373 0.000000e+00 1243.0
14 TraesCS3A01G238400 chr3B 92.439 410 31 0 2336 2745 428096642 428096233 3.050000e-163 586.0
15 TraesCS3A01G238400 chr3B 93.540 387 15 7 3938 4321 428093673 428093294 1.100000e-157 568.0
16 TraesCS3A01G238400 chr3B 78.270 497 98 7 2231 2721 816070364 816070856 2.050000e-80 311.0
17 TraesCS3A01G238400 chr3B 89.700 233 9 5 4306 4538 428093136 428092919 4.480000e-72 283.0
18 TraesCS3A01G238400 chr3B 92.670 191 11 1 6773 6960 428089087 428088897 9.690000e-69 272.0
19 TraesCS3A01G238400 chr3B 77.069 423 84 11 2323 2737 822786811 822787228 1.640000e-56 231.0
20 TraesCS3A01G238400 chr3B 84.615 247 19 5 110 352 428100735 428100504 2.130000e-55 228.0
21 TraesCS3A01G238400 chr3B 90.991 111 10 0 1 111 428101004 428100894 4.740000e-32 150.0
22 TraesCS3A01G238400 chr3B 92.135 89 6 1 1860 1947 531791062 531791150 2.870000e-24 124.0
23 TraesCS3A01G238400 chr3B 81.818 143 19 4 1675 1811 697683771 697683912 6.220000e-21 113.0
24 TraesCS3A01G238400 chr7A 87.179 624 63 13 6967 7580 35285268 35284652 0.000000e+00 693.0
25 TraesCS3A01G238400 chr7A 86.400 625 67 10 6967 7580 35249302 35248685 0.000000e+00 667.0
26 TraesCS3A01G238400 chr7A 88.015 267 21 5 7314 7570 639760575 639760840 9.560000e-79 305.0
27 TraesCS3A01G238400 chr7A 84.810 79 12 0 2937 3015 590738487 590738565 6.310000e-11 80.5
28 TraesCS3A01G238400 chrUn 87.049 610 65 7 6967 7566 201299733 201299128 0.000000e+00 676.0
29 TraesCS3A01G238400 chrUn 87.732 269 22 5 7312 7570 43545457 43545190 3.440000e-78 303.0
30 TraesCS3A01G238400 chr6D 86.972 568 60 10 6967 7520 17264348 17263781 1.800000e-175 627.0
31 TraesCS3A01G238400 chr6D 85.854 615 57 10 6967 7570 307495678 307495083 1.800000e-175 627.0
32 TraesCS3A01G238400 chr2A 85.413 617 73 12 6968 7570 695318842 695319455 6.460000e-175 625.0
33 TraesCS3A01G238400 chr2A 78.543 508 95 12 2235 2733 655944681 655944179 9.490000e-84 322.0
34 TraesCS3A01G238400 chr2A 90.984 122 10 1 1828 1949 617098016 617097896 6.090000e-36 163.0
35 TraesCS3A01G238400 chr1D 85.227 616 77 8 6967 7570 198264289 198264902 8.350000e-174 621.0
36 TraesCS3A01G238400 chr1D 86.567 268 26 5 7312 7570 374362566 374362832 3.460000e-73 287.0
37 TraesCS3A01G238400 chr1D 80.137 292 45 11 1658 1940 437669863 437670150 9.970000e-49 206.0
38 TraesCS3A01G238400 chr5A 84.715 615 80 10 6967 7570 632162384 632162995 3.030000e-168 603.0
39 TraesCS3A01G238400 chr5A 86.517 267 25 8 7314 7570 363866988 363866723 4.480000e-72 283.0
40 TraesCS3A01G238400 chr5A 80.800 250 37 7 1682 1924 6872412 6872167 1.300000e-42 185.0
41 TraesCS3A01G238400 chr4D 87.732 269 22 6 7312 7570 344232721 344232988 3.440000e-78 303.0
42 TraesCS3A01G238400 chr4D 76.460 531 99 13 2232 2739 121072354 121071827 1.620000e-66 265.0
43 TraesCS3A01G238400 chr2D 86.989 269 24 7 7312 7570 287200146 287200413 7.440000e-75 292.0
44 TraesCS3A01G238400 chr2D 80.925 346 62 4 2379 2722 621133455 621133798 3.490000e-68 270.0
45 TraesCS3A01G238400 chr2D 85.441 261 25 12 7314 7570 137559525 137559776 7.550000e-65 259.0
46 TraesCS3A01G238400 chr7B 76.217 534 96 19 2232 2739 610333719 610333191 3.510000e-63 254.0
47 TraesCS3A01G238400 chr7B 74.314 510 95 22 2241 2739 709599280 709599764 4.670000e-42 183.0
48 TraesCS3A01G238400 chr5B 75.915 519 108 14 2232 2739 459180753 459181265 4.540000e-62 250.0
49 TraesCS3A01G238400 chr5B 82.031 128 17 5 1821 1943 532349154 532349028 3.740000e-18 104.0
50 TraesCS3A01G238400 chr6B 86.726 226 22 5 7346 7570 506878093 506878311 2.110000e-60 244.0
51 TraesCS3A01G238400 chr4A 75.822 517 88 25 2232 2739 144015088 144015576 2.130000e-55 228.0
52 TraesCS3A01G238400 chr6A 76.402 428 89 10 2320 2739 845402 845825 3.560000e-53 220.0
53 TraesCS3A01G238400 chr6A 88.542 96 9 2 1863 1956 95789763 95789668 1.730000e-21 115.0
54 TraesCS3A01G238400 chr5D 74.806 516 101 12 2232 2724 487402270 487402779 9.970000e-49 206.0
55 TraesCS3A01G238400 chr7D 74.397 539 90 22 2232 2745 461894552 461894037 3.610000e-43 187.0
56 TraesCS3A01G238400 chr7D 89.362 94 8 2 1871 1962 17513826 17513733 4.810000e-22 117.0
57 TraesCS3A01G238400 chr2B 82.759 145 25 0 2586 2730 775460512 775460368 6.170000e-26 130.0
58 TraesCS3A01G238400 chr1B 83.065 124 21 0 2601 2724 554720311 554720434 6.220000e-21 113.0
59 TraesCS3A01G238400 chr1A 82.759 87 13 1 1700 1784 531656850 531656936 8.160000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G238400 chr3A 445864057 445871636 7579 True 13998.0 13998 100.000000 1 7580 1 chr3A.!!$R1 7579
1 TraesCS3A01G238400 chr3D 330267328 330276164 8836 True 1494.5 3991 89.934667 1 6971 6 chr3D.!!$R2 6970
2 TraesCS3A01G238400 chr3D 485205433 485206047 614 False 699.0 699 87.500000 6967 7570 1 chr3D.!!$F1 603
3 TraesCS3A01G238400 chr3B 428088897 428101004 12107 True 842.0 1945 90.875000 1 6960 10 chr3B.!!$R1 6959
4 TraesCS3A01G238400 chr7A 35284652 35285268 616 True 693.0 693 87.179000 6967 7580 1 chr7A.!!$R2 613
5 TraesCS3A01G238400 chr7A 35248685 35249302 617 True 667.0 667 86.400000 6967 7580 1 chr7A.!!$R1 613
6 TraesCS3A01G238400 chrUn 201299128 201299733 605 True 676.0 676 87.049000 6967 7566 1 chrUn.!!$R2 599
7 TraesCS3A01G238400 chr6D 17263781 17264348 567 True 627.0 627 86.972000 6967 7520 1 chr6D.!!$R1 553
8 TraesCS3A01G238400 chr6D 307495083 307495678 595 True 627.0 627 85.854000 6967 7570 1 chr6D.!!$R2 603
9 TraesCS3A01G238400 chr2A 695318842 695319455 613 False 625.0 625 85.413000 6968 7570 1 chr2A.!!$F1 602
10 TraesCS3A01G238400 chr2A 655944179 655944681 502 True 322.0 322 78.543000 2235 2733 1 chr2A.!!$R2 498
11 TraesCS3A01G238400 chr1D 198264289 198264902 613 False 621.0 621 85.227000 6967 7570 1 chr1D.!!$F1 603
12 TraesCS3A01G238400 chr5A 632162384 632162995 611 False 603.0 603 84.715000 6967 7570 1 chr5A.!!$F1 603
13 TraesCS3A01G238400 chr4D 121071827 121072354 527 True 265.0 265 76.460000 2232 2739 1 chr4D.!!$R1 507
14 TraesCS3A01G238400 chr7B 610333191 610333719 528 True 254.0 254 76.217000 2232 2739 1 chr7B.!!$R1 507
15 TraesCS3A01G238400 chr5B 459180753 459181265 512 False 250.0 250 75.915000 2232 2739 1 chr5B.!!$F1 507
16 TraesCS3A01G238400 chr5D 487402270 487402779 509 False 206.0 206 74.806000 2232 2724 1 chr5D.!!$F1 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 519 0.093705 GATTCTTGTGACGCACGCTC 59.906 55.000 5.69 0.0 37.14 5.03 F
1071 3297 0.178992 AGGAGGCAGAGAGGAGATCG 60.179 60.000 0.00 0.0 0.00 3.69 F
1918 4191 0.035152 TGCATCCCTAGTTGGTGCAG 60.035 55.000 12.10 0.0 37.44 4.41 F
2054 4374 0.107800 CAGCACAGTAGCCTGCATCT 60.108 55.000 0.00 0.0 42.81 2.90 F
3073 7075 0.108945 GGCATGAACAAGCAGAAGGC 60.109 55.000 0.00 0.0 45.30 4.35 F
3265 7268 0.108138 CCAACCCAAAAACCGTTGCA 60.108 50.000 0.00 0.0 36.41 4.08 F
3295 7298 0.321034 GCCCTTTACCGTCGGTCTTT 60.321 55.000 22.74 0.0 37.09 2.52 F
3361 7364 0.818296 GATGCGGTCTGTACACTCCT 59.182 55.000 0.00 0.0 0.00 3.69 F
3536 7547 0.937304 TCTTGCTCGTTCTGTTGTGC 59.063 50.000 0.00 0.0 0.00 4.57 F
4311 8328 1.460743 CCCATGTATTACGCATCGCAG 59.539 52.381 0.00 0.0 0.00 5.18 F
5641 11325 0.328258 AGATTTGGGCGGCAACTACT 59.672 50.000 12.47 1.1 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1916 4189 0.035056 ATTTCACTTCCCGGCCTCTG 60.035 55.000 0.00 0.00 0.00 3.35 R
2073 4393 0.035317 ATCGAGCAAGAACACAGCCA 59.965 50.000 0.00 0.00 0.00 4.75 R
2782 6781 0.175989 CTCGGGCTAGACAAGGTTCC 59.824 60.000 0.00 0.00 0.00 3.62 R
3126 7129 0.317854 GATGTCGACGATGCCGATCA 60.318 55.000 11.62 0.00 38.38 2.92 R
4272 8289 0.036010 GTGAGCTGTACCCTGCATGT 60.036 55.000 0.00 0.00 37.95 3.21 R
4273 8290 0.745845 GGTGAGCTGTACCCTGCATG 60.746 60.000 0.00 0.00 37.95 4.06 R
4303 8320 1.571919 CCAACCTAGTACTGCGATGC 58.428 55.000 5.39 0.00 0.00 3.91 R
5352 11022 1.273606 ACCACATCTGTCAGAGTTCCG 59.726 52.381 8.82 0.00 0.00 4.30 R
5595 11270 6.421801 CCATTCAGAACCAGTTCAAATGAAAC 59.578 38.462 25.04 0.00 41.88 2.78 R
5828 11549 0.530288 ATTAATGTGGCCGCACAACC 59.470 50.000 23.94 0.00 38.69 3.77 R
6712 12435 0.106708 TAGAACCCCTGCGCATGATC 59.893 55.000 12.24 7.21 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.789213 TCGGCATCATTCAAACCTTGA 58.211 42.857 0.00 0.00 38.04 3.02
66 67 3.904800 TGCTCTATTCACATTTCCCGA 57.095 42.857 0.00 0.00 0.00 5.14
76 77 4.647611 TCACATTTCCCGAACTGTTGTAT 58.352 39.130 0.00 0.00 32.83 2.29
267 432 4.084641 GCTTATCAAGATAGCACGCTTCAG 60.085 45.833 0.00 0.00 0.00 3.02
338 503 1.474077 GCAGTTCAATTCCCGCAGATT 59.526 47.619 0.00 0.00 0.00 2.40
354 519 0.093705 GATTCTTGTGACGCACGCTC 59.906 55.000 5.69 0.00 37.14 5.03
355 520 1.291877 ATTCTTGTGACGCACGCTCC 61.292 55.000 5.69 0.00 37.14 4.70
358 523 1.568612 CTTGTGACGCACGCTCCATT 61.569 55.000 5.69 0.00 37.14 3.16
359 524 0.319986 TTGTGACGCACGCTCCATTA 60.320 50.000 5.69 0.00 37.14 1.90
360 525 0.735978 TGTGACGCACGCTCCATTAG 60.736 55.000 5.69 0.00 37.14 1.73
373 538 5.485662 GCTCCATTAGCGTTTTTGATACT 57.514 39.130 0.00 0.00 42.53 2.12
375 540 6.650372 GCTCCATTAGCGTTTTTGATACTAG 58.350 40.000 0.00 0.00 42.53 2.57
376 541 6.479001 GCTCCATTAGCGTTTTTGATACTAGA 59.521 38.462 0.00 0.00 42.53 2.43
378 543 8.193250 TCCATTAGCGTTTTTGATACTAGAAC 57.807 34.615 0.00 0.00 0.00 3.01
379 544 7.009815 TCCATTAGCGTTTTTGATACTAGAACG 59.990 37.037 0.00 1.17 44.08 3.95
380 545 6.636666 TTAGCGTTTTTGATACTAGAACGG 57.363 37.500 11.19 0.00 42.21 4.44
381 546 3.370061 AGCGTTTTTGATACTAGAACGGC 59.630 43.478 11.19 5.38 42.21 5.68
383 548 4.492085 GCGTTTTTGATACTAGAACGGCTC 60.492 45.833 11.19 0.00 42.21 4.70
386 551 6.529125 CGTTTTTGATACTAGAACGGCTCTTA 59.471 38.462 0.00 0.00 39.33 2.10
387 552 7.222224 CGTTTTTGATACTAGAACGGCTCTTAT 59.778 37.037 0.00 0.00 39.33 1.73
388 553 9.525409 GTTTTTGATACTAGAACGGCTCTTATA 57.475 33.333 0.00 0.00 35.41 0.98
389 554 9.745880 TTTTTGATACTAGAACGGCTCTTATAG 57.254 33.333 0.00 0.00 35.41 1.31
390 555 8.461249 TTTGATACTAGAACGGCTCTTATAGT 57.539 34.615 0.00 6.50 35.41 2.12
392 557 9.736414 TTGATACTAGAACGGCTCTTATAGTAT 57.264 33.333 15.30 15.30 41.01 2.12
393 558 9.736414 TGATACTAGAACGGCTCTTATAGTATT 57.264 33.333 15.96 6.56 39.55 1.89
397 562 8.958506 ACTAGAACGGCTCTTATAGTATTATGG 58.041 37.037 0.00 0.00 35.41 2.74
400 565 6.527057 ACGGCTCTTATAGTATTATGGACC 57.473 41.667 0.00 0.00 0.00 4.46
401 566 5.125097 ACGGCTCTTATAGTATTATGGACCG 59.875 44.000 0.00 0.00 40.13 4.79
402 567 5.356190 CGGCTCTTATAGTATTATGGACCGA 59.644 44.000 0.00 0.00 36.59 4.69
404 569 6.183360 GGCTCTTATAGTATTATGGACCGAGG 60.183 46.154 0.00 0.00 0.00 4.63
405 570 6.183360 GCTCTTATAGTATTATGGACCGAGGG 60.183 46.154 0.00 0.00 0.00 4.30
408 1034 2.890814 AGTATTATGGACCGAGGGAGG 58.109 52.381 0.00 0.00 37.30 4.30
428 1054 5.512576 GGAGGGAGTAGCTTTCTTGTGTTAA 60.513 44.000 0.00 0.00 0.00 2.01
608 2820 8.296000 TGCAGATTCTTTATTTTTCATTCACGA 58.704 29.630 0.00 0.00 0.00 4.35
652 2864 3.423154 GCTGCCTTTCCGTCGGTG 61.423 66.667 11.88 3.07 0.00 4.94
681 2893 2.428890 ACGTCAGTTCTCTCCATCCATC 59.571 50.000 0.00 0.00 0.00 3.51
685 2897 5.055812 GTCAGTTCTCTCCATCCATCAATC 58.944 45.833 0.00 0.00 0.00 2.67
702 2914 5.739752 TCAATCTATTGGCGTTGATTGAG 57.260 39.130 18.23 3.35 45.29 3.02
760 2976 2.482490 CCACTAATACGAAAGGGGGTCG 60.482 54.545 0.00 0.00 44.10 4.79
950 3170 0.514691 CAGACAGCGAGCAAAGGAAC 59.485 55.000 0.00 0.00 0.00 3.62
1006 3232 2.355115 CCCCTTTCCCCAGTTCCG 59.645 66.667 0.00 0.00 0.00 4.30
1071 3297 0.178992 AGGAGGCAGAGAGGAGATCG 60.179 60.000 0.00 0.00 0.00 3.69
1072 3298 0.179004 GGAGGCAGAGAGGAGATCGA 60.179 60.000 0.00 0.00 0.00 3.59
1226 3471 3.454082 CCAAGAGGATACAGAAGGAGCTT 59.546 47.826 0.00 0.00 41.41 3.74
1244 3489 3.118445 AGCTTAAGGATCTGCAGAAGGAC 60.118 47.826 22.50 11.08 0.00 3.85
1294 3548 3.068732 GCTCCTTTCTTGCTTCTTTTGGT 59.931 43.478 0.00 0.00 0.00 3.67
1304 3558 4.947645 TGCTTCTTTTGGTCTGGATTTTG 58.052 39.130 0.00 0.00 0.00 2.44
1305 3559 3.742882 GCTTCTTTTGGTCTGGATTTTGC 59.257 43.478 0.00 0.00 0.00 3.68
1306 3560 4.740334 GCTTCTTTTGGTCTGGATTTTGCA 60.740 41.667 0.00 0.00 0.00 4.08
1307 3561 4.320608 TCTTTTGGTCTGGATTTTGCAC 57.679 40.909 0.00 0.00 0.00 4.57
1308 3562 3.960102 TCTTTTGGTCTGGATTTTGCACT 59.040 39.130 0.00 0.00 0.00 4.40
1310 3564 4.320608 TTTGGTCTGGATTTTGCACTTC 57.679 40.909 0.00 0.00 0.00 3.01
1311 3565 3.228188 TGGTCTGGATTTTGCACTTCT 57.772 42.857 0.00 0.00 0.00 2.85
1312 3566 4.365514 TGGTCTGGATTTTGCACTTCTA 57.634 40.909 0.00 0.00 0.00 2.10
1313 3567 4.326826 TGGTCTGGATTTTGCACTTCTAG 58.673 43.478 0.00 0.00 0.00 2.43
1320 3588 4.439289 GGATTTTGCACTTCTAGGACATGC 60.439 45.833 0.00 0.00 36.81 4.06
1329 3597 1.278985 TCTAGGACATGCCCTTGTGTG 59.721 52.381 5.66 0.00 37.74 3.82
1349 3617 4.214437 GTGAAGAGTCAGATTTTTGTGCG 58.786 43.478 0.00 0.00 33.27 5.34
1383 3651 1.335324 GGAATGACTTGCTGTGCACAC 60.335 52.381 17.42 13.56 38.71 3.82
1411 3681 2.830704 CTTCCGTGACTGTACCGGCC 62.831 65.000 0.00 0.00 41.46 6.13
1432 3704 2.664916 GCGAAAGAATGCTTTGCTTGA 58.335 42.857 2.48 0.00 44.10 3.02
1453 3725 2.289694 ACAGCTATTTGGAGTGACGCTT 60.290 45.455 0.00 0.00 0.00 4.68
1590 3862 4.201990 GCATGAATCTGGACTTGGATCAAC 60.202 45.833 0.00 0.00 0.00 3.18
1594 3866 1.001974 TCTGGACTTGGATCAACGGTG 59.998 52.381 0.00 0.00 0.00 4.94
1595 3867 0.605319 TGGACTTGGATCAACGGTGC 60.605 55.000 0.00 0.00 0.00 5.01
1600 3872 2.027192 ACTTGGATCAACGGTGCTATGT 60.027 45.455 0.00 0.00 0.00 2.29
1616 3888 3.682718 GCTATGTACTGACATGTGGCCTT 60.683 47.826 1.15 0.00 46.11 4.35
1625 3897 1.967779 ACATGTGGCCTTGTTAAACCC 59.032 47.619 3.32 0.00 0.00 4.11
1640 3912 3.726517 CCCGCGTCACAGGCAAAG 61.727 66.667 4.92 0.00 0.00 2.77
1666 3938 1.307097 GCCTGCAATGAGAGCCTTAG 58.693 55.000 0.00 0.00 0.00 2.18
1726 3998 4.157840 GCCGGGTTCAATTCTTAGAATTGT 59.842 41.667 33.26 9.83 38.44 2.71
1915 4188 1.271325 TGTGTGCATCCCTAGTTGGTG 60.271 52.381 0.00 0.00 0.00 4.17
1916 4189 0.322456 TGTGCATCCCTAGTTGGTGC 60.322 55.000 7.60 7.60 34.81 5.01
1917 4190 0.322456 GTGCATCCCTAGTTGGTGCA 60.322 55.000 12.10 12.10 38.90 4.57
1918 4191 0.035152 TGCATCCCTAGTTGGTGCAG 60.035 55.000 12.10 0.00 37.44 4.41
1919 4192 0.253044 GCATCCCTAGTTGGTGCAGA 59.747 55.000 9.27 0.00 34.56 4.26
1920 4193 1.745141 GCATCCCTAGTTGGTGCAGAG 60.745 57.143 9.27 0.00 34.56 3.35
1923 4196 1.078143 CCTAGTTGGTGCAGAGGCC 60.078 63.158 0.00 0.00 40.13 5.19
1940 4219 1.095600 GCCGGGAAGTGAAATTCTCC 58.904 55.000 2.18 0.00 0.00 3.71
1962 4242 3.011257 CCCCCAAATAAGGTTTCTGGAGA 59.989 47.826 0.00 0.00 0.00 3.71
2001 4321 1.684049 CTCTCCTCTTGTCGCCCCT 60.684 63.158 0.00 0.00 0.00 4.79
2019 4339 3.284449 GTGTGGTGGTTGTCGGCC 61.284 66.667 0.00 0.00 0.00 6.13
2052 4372 1.748122 GCAGCACAGTAGCCTGCAT 60.748 57.895 12.69 0.00 42.81 3.96
2054 4374 0.107800 CAGCACAGTAGCCTGCATCT 60.108 55.000 0.00 0.00 42.81 2.90
2063 4383 2.879907 CCTGCATCTGGTTTGGCG 59.120 61.111 0.00 0.00 0.00 5.69
2064 4384 2.703798 CCTGCATCTGGTTTGGCGG 61.704 63.158 0.00 0.00 0.00 6.13
2065 4385 1.973281 CTGCATCTGGTTTGGCGGT 60.973 57.895 0.00 0.00 0.00 5.68
2066 4386 2.203972 CTGCATCTGGTTTGGCGGTG 62.204 60.000 0.00 0.00 0.00 4.94
2067 4387 2.993471 GCATCTGGTTTGGCGGTGG 61.993 63.158 0.00 0.00 0.00 4.61
2068 4388 1.603455 CATCTGGTTTGGCGGTGGT 60.603 57.895 0.00 0.00 0.00 4.16
2069 4389 1.603455 ATCTGGTTTGGCGGTGGTG 60.603 57.895 0.00 0.00 0.00 4.17
2070 4390 2.351924 ATCTGGTTTGGCGGTGGTGT 62.352 55.000 0.00 0.00 0.00 4.16
2071 4391 2.043852 TGGTTTGGCGGTGGTGTT 60.044 55.556 0.00 0.00 0.00 3.32
2072 4392 2.070654 CTGGTTTGGCGGTGGTGTTC 62.071 60.000 0.00 0.00 0.00 3.18
2073 4393 1.826487 GGTTTGGCGGTGGTGTTCT 60.826 57.895 0.00 0.00 0.00 3.01
2089 4409 1.265365 GTTCTGGCTGTGTTCTTGCTC 59.735 52.381 0.00 0.00 0.00 4.26
2101 4421 0.249955 TCTTGCTCGATGTGGCATCA 59.750 50.000 9.40 0.00 38.30 3.07
2102 4422 0.376152 CTTGCTCGATGTGGCATCAC 59.624 55.000 9.40 0.00 43.87 3.06
2133 4453 1.299648 CAAGAGTTGGGCGATGGGA 59.700 57.895 0.00 0.00 0.00 4.37
2157 4477 2.584608 CCCGGCTTCTTCGATGGT 59.415 61.111 0.00 0.00 0.00 3.55
2158 4478 1.820581 CCCGGCTTCTTCGATGGTA 59.179 57.895 0.00 0.00 0.00 3.25
2160 4480 0.876342 CCGGCTTCTTCGATGGTAGC 60.876 60.000 13.97 13.97 0.00 3.58
2169 4490 2.279517 GATGGTAGCGCCTCCGTG 60.280 66.667 16.21 0.00 38.35 4.94
2172 4493 4.078516 GGTAGCGCCTCCGTGGTT 62.079 66.667 2.29 0.00 38.35 3.67
2185 4506 2.093181 TCCGTGGTTAAGTGGATGATGG 60.093 50.000 0.00 0.00 0.00 3.51
2186 4507 2.093181 CCGTGGTTAAGTGGATGATGGA 60.093 50.000 0.00 0.00 0.00 3.41
2218 4539 3.314331 CAGTGGTGACGGCCTCCT 61.314 66.667 0.00 0.00 0.00 3.69
2220 4541 2.358737 GTGGTGACGGCCTCCTTG 60.359 66.667 0.00 0.00 0.00 3.61
2256 4599 1.960040 ATCAGGTTCGATGCGGCTCA 61.960 55.000 0.00 0.00 0.00 4.26
2267 4610 1.079543 GCGGCTCAGTGAGTGACAT 60.080 57.895 21.06 0.00 31.39 3.06
2268 4611 1.357258 GCGGCTCAGTGAGTGACATG 61.357 60.000 21.06 6.54 31.39 3.21
2279 4624 5.048434 CAGTGAGTGACATGTGTCTCTTCTA 60.048 44.000 20.35 6.48 45.51 2.10
2290 4635 2.634600 GTCTCTTCTAGAGGCGTCAGA 58.365 52.381 9.41 6.80 42.54 3.27
2370 4926 2.621338 GAGACGTCAAATCATGCCTGA 58.379 47.619 19.50 0.00 35.41 3.86
2440 4999 0.521735 GTTGTTGGATCGAAGGTGGC 59.478 55.000 0.00 0.00 0.00 5.01
2476 5043 0.530870 GCGAGGCTGTATGGGACTTC 60.531 60.000 0.00 0.00 0.00 3.01
2490 5058 2.414806 GGACTTCTTGACTTCCGGTTC 58.585 52.381 0.00 0.00 0.00 3.62
2619 5187 1.533129 CGATCAGGTTATGTCGACGCA 60.533 52.381 11.62 0.00 35.68 5.24
2654 5222 1.171308 CTTGCTGAAGGTGGTGGATG 58.829 55.000 0.00 0.00 0.00 3.51
2806 6805 0.395862 CTTGTCTAGCCCGAGGAGGA 60.396 60.000 0.00 0.00 45.00 3.71
2816 6815 1.609501 CGAGGAGGACAAGGGACCA 60.610 63.158 0.00 0.00 0.00 4.02
2835 6834 3.285215 GCTGATGATGGCCTGCGG 61.285 66.667 3.32 0.00 0.00 5.69
2847 6846 3.120385 CTGCGGCGACTCAATGCA 61.120 61.111 12.98 0.00 0.00 3.96
2902 6901 3.776616 CAGGGAATCTGGCTCTCAC 57.223 57.895 0.00 0.00 39.76 3.51
2903 6902 0.179936 CAGGGAATCTGGCTCTCACC 59.820 60.000 0.00 0.00 39.76 4.02
2909 6911 2.230189 ATCTGGCTCTCACCCCTCGA 62.230 60.000 0.00 0.00 0.00 4.04
2930 6932 8.690883 CTCGAAGAAATTCTGAACCAGGAGGT 62.691 46.154 0.00 0.00 45.14 3.85
2950 6952 1.766494 TGCCCCATTGATAGCAAGTG 58.234 50.000 0.00 0.00 37.45 3.16
2975 6977 4.943705 GCAATCTCAATCTACAAGAACCCA 59.056 41.667 0.00 0.00 0.00 4.51
2978 6980 5.825593 TCTCAATCTACAAGAACCCAGTT 57.174 39.130 0.00 0.00 0.00 3.16
2979 6981 5.794894 TCTCAATCTACAAGAACCCAGTTC 58.205 41.667 0.00 0.00 42.25 3.01
2992 6994 1.407299 CCCAGTTCTCCATGATCGCAA 60.407 52.381 0.00 0.00 0.00 4.85
3020 7022 5.220873 GCATATCGATCTCCGCTATGACTTA 60.221 44.000 0.00 0.00 45.22 2.24
3030 7032 5.972935 TCCGCTATGACTTAATTGAGAACA 58.027 37.500 3.94 4.58 0.00 3.18
3043 7045 1.066430 TGAGAACAGTAATGGGACCGC 60.066 52.381 0.00 0.00 0.00 5.68
3060 7062 4.833811 CGGAGTTCATCGGCATGA 57.166 55.556 0.00 0.00 37.24 3.07
3061 7063 3.064079 CGGAGTTCATCGGCATGAA 57.936 52.632 0.00 7.85 45.20 2.57
3067 7069 1.532523 TTCATCGGCATGAACAAGCA 58.467 45.000 0.00 0.00 42.99 3.91
3068 7070 1.089112 TCATCGGCATGAACAAGCAG 58.911 50.000 0.00 0.62 35.99 4.24
3069 7071 1.089112 CATCGGCATGAACAAGCAGA 58.911 50.000 0.00 7.21 39.17 4.26
3070 7072 1.469703 CATCGGCATGAACAAGCAGAA 59.530 47.619 8.56 0.00 38.38 3.02
3071 7073 1.159285 TCGGCATGAACAAGCAGAAG 58.841 50.000 0.00 0.00 32.20 2.85
3072 7074 0.169672 CGGCATGAACAAGCAGAAGG 59.830 55.000 0.00 0.00 0.00 3.46
3073 7075 0.108945 GGCATGAACAAGCAGAAGGC 60.109 55.000 0.00 0.00 45.30 4.35
3085 7087 3.699411 GCAGAAGGCTGATATCCTGAT 57.301 47.619 0.00 0.00 45.17 2.90
3126 7129 1.617947 ATTCCGGAGCTTCGAGCCTT 61.618 55.000 18.24 0.00 43.77 4.35
3158 7161 0.316522 CGACATCGCCATCCTCTCAT 59.683 55.000 0.00 0.00 0.00 2.90
3172 7175 2.568956 CCTCTCATGACAGGGTTGAAGA 59.431 50.000 9.09 0.00 0.00 2.87
3174 7177 2.568956 TCTCATGACAGGGTTGAAGAGG 59.431 50.000 0.00 0.00 0.00 3.69
3223 7226 1.794222 GCGTCGCAGGCAAATAAGT 59.206 52.632 13.44 0.00 0.00 2.24
3261 7264 2.436544 GGCCCAACCCAAAAACCGT 61.437 57.895 0.00 0.00 0.00 4.83
3265 7268 0.108138 CCAACCCAAAAACCGTTGCA 60.108 50.000 0.00 0.00 36.41 4.08
3266 7269 1.474143 CCAACCCAAAAACCGTTGCAT 60.474 47.619 0.00 0.00 36.41 3.96
3267 7270 2.224066 CCAACCCAAAAACCGTTGCATA 60.224 45.455 0.00 0.00 36.41 3.14
3268 7271 3.556004 CCAACCCAAAAACCGTTGCATAT 60.556 43.478 0.00 0.00 36.41 1.78
3269 7272 3.311486 ACCCAAAAACCGTTGCATATG 57.689 42.857 0.00 0.00 0.00 1.78
3270 7273 2.028567 ACCCAAAAACCGTTGCATATGG 60.029 45.455 4.56 0.00 39.00 2.74
3271 7274 1.999024 CCAAAAACCGTTGCATATGGC 59.001 47.619 4.56 0.00 45.13 4.40
3293 7296 1.608627 AGCCCTTTACCGTCGGTCT 60.609 57.895 22.74 7.79 37.09 3.85
3294 7297 1.190178 AGCCCTTTACCGTCGGTCTT 61.190 55.000 22.74 0.00 37.09 3.01
3295 7298 0.321034 GCCCTTTACCGTCGGTCTTT 60.321 55.000 22.74 0.00 37.09 2.52
3354 7357 1.043116 CCCAGAGGATGCGGTCTGTA 61.043 60.000 3.36 0.00 38.88 2.74
3361 7364 0.818296 GATGCGGTCTGTACACTCCT 59.182 55.000 0.00 0.00 0.00 3.69
3453 7464 4.319549 GCTACGACTTGTTTCCCTTTTCTG 60.320 45.833 0.00 0.00 0.00 3.02
3466 7477 8.765219 GTTTCCCTTTTCTGAAGAAATAAAAGC 58.235 33.333 6.33 0.00 42.83 3.51
3530 7541 4.675190 ATTCAATGTCTTGCTCGTTCTG 57.325 40.909 0.00 0.00 32.11 3.02
3532 7543 3.466836 TCAATGTCTTGCTCGTTCTGTT 58.533 40.909 0.00 0.00 32.11 3.16
3536 7547 0.937304 TCTTGCTCGTTCTGTTGTGC 59.063 50.000 0.00 0.00 0.00 4.57
3548 7559 2.591429 TTGTGCCCACAGCTCGTG 60.591 61.111 8.73 8.73 45.92 4.35
3646 7658 2.164219 TCACGGAGATACGGTGTTTACC 59.836 50.000 0.00 0.00 45.70 2.85
3675 7687 4.259451 GCGATCTGACAAACGACATTAGTC 60.259 45.833 0.00 0.00 41.46 2.59
3738 7752 6.867723 AGAATAAAATCCCTGGCTGGATATT 58.132 36.000 12.58 8.35 44.49 1.28
3754 7768 4.202770 TGGATATTGGGATATTTGGTGGGG 60.203 45.833 0.00 0.00 0.00 4.96
3773 7787 1.547901 GGTTTAGTTCCAAGCTGGCCT 60.548 52.381 3.32 0.00 37.47 5.19
3840 7854 1.980765 TCTGATATGTGAGGATGGGCC 59.019 52.381 0.00 0.00 0.00 5.80
3998 8013 6.495526 ACTTATTTCTGGGGAGATCTAGCTAC 59.504 42.308 0.00 0.00 0.00 3.58
4003 8018 4.608473 TCTGGGGAGATCTAGCTACCTATT 59.392 45.833 0.00 0.00 39.02 1.73
4042 8057 7.872113 TTTTATGTTTCCCAACAAATGCTTT 57.128 28.000 0.00 0.00 46.17 3.51
4062 8077 6.152831 TGCTTTCACTAGAACTAGCTATGTCA 59.847 38.462 8.54 0.00 38.08 3.58
4105 8120 5.879237 ACGTGTGAAGCAATGTTATATTGG 58.121 37.500 4.00 0.00 0.00 3.16
4215 8232 9.426837 CATTGATGACACCAAACTATTGAAAAT 57.573 29.630 0.00 0.00 38.94 1.82
4272 8289 8.864087 AGATCAGTTGTATATATGCAGAGTGAA 58.136 33.333 18.08 9.22 0.00 3.18
4273 8290 8.824159 ATCAGTTGTATATATGCAGAGTGAAC 57.176 34.615 18.08 9.02 0.00 3.18
4274 8291 7.781056 TCAGTTGTATATATGCAGAGTGAACA 58.219 34.615 14.79 0.00 0.00 3.18
4275 8292 8.424133 TCAGTTGTATATATGCAGAGTGAACAT 58.576 33.333 14.79 0.00 0.00 2.71
4303 8320 3.179443 ACAGCTCACCCATGTATTACG 57.821 47.619 0.00 0.00 0.00 3.18
4311 8328 1.460743 CCCATGTATTACGCATCGCAG 59.539 52.381 0.00 0.00 0.00 5.18
4342 8531 6.350949 GGTTGGCATGACATGGTTATAACTTT 60.351 38.462 17.03 0.77 0.00 2.66
4348 8537 9.248291 GCATGACATGGTTATAACTTTTATTGG 57.752 33.333 17.03 2.37 0.00 3.16
4382 8571 5.044846 AGCAAACTGTCCCCTATGTTTCTAT 60.045 40.000 0.00 0.00 31.30 1.98
4390 8579 4.347000 TCCCCTATGTTTCTATACTGGCAC 59.653 45.833 0.00 0.00 0.00 5.01
4391 8580 4.102524 CCCCTATGTTTCTATACTGGCACA 59.897 45.833 0.00 0.00 0.00 4.57
4392 8581 5.397447 CCCCTATGTTTCTATACTGGCACAA 60.397 44.000 0.00 0.00 38.70 3.33
4433 8622 1.909302 GATGGTCCCTGAACTTGAGGA 59.091 52.381 0.00 0.00 31.48 3.71
4535 8725 6.312672 GTCGCAATTTGGGTTTATTTAAGCAT 59.687 34.615 12.54 0.00 35.94 3.79
4543 8733 9.495572 TTTGGGTTTATTTAAGCATAAGTTTGG 57.504 29.630 0.00 0.00 35.94 3.28
4583 10243 2.134346 GCATTTTGTTTGCCGATGTGT 58.866 42.857 0.00 0.00 33.95 3.72
4805 10470 8.656849 GGTACAACTGTATGTAGAATTGTCTTG 58.343 37.037 0.00 0.00 36.51 3.02
4815 10480 6.873997 TGTAGAATTGTCTTGGATGTATCGT 58.126 36.000 0.00 0.00 35.12 3.73
4861 10526 2.481185 CACAATGCTTTTTGGATGGTGC 59.519 45.455 0.00 0.00 40.65 5.01
4871 10536 1.873572 GGATGGTGCGCGAATTTGC 60.874 57.895 12.10 7.68 0.00 3.68
4919 10584 9.944663 TCAAGTAACACTGATGTAAATTTTGTC 57.055 29.630 0.00 0.00 38.45 3.18
4920 10585 9.950680 CAAGTAACACTGATGTAAATTTTGTCT 57.049 29.630 0.00 0.00 38.45 3.41
4925 10590 9.950680 AACACTGATGTAAATTTTGTCTACAAG 57.049 29.630 0.00 0.00 38.45 3.16
4926 10591 8.567948 ACACTGATGTAAATTTTGTCTACAAGG 58.432 33.333 0.00 0.00 37.26 3.61
4927 10592 8.783093 CACTGATGTAAATTTTGTCTACAAGGA 58.217 33.333 0.00 0.00 37.15 3.36
4928 10593 9.520515 ACTGATGTAAATTTTGTCTACAAGGAT 57.479 29.630 0.00 0.00 37.15 3.24
4929 10594 9.778993 CTGATGTAAATTTTGTCTACAAGGATG 57.221 33.333 0.00 0.00 37.15 3.51
4930 10595 8.739039 TGATGTAAATTTTGTCTACAAGGATGG 58.261 33.333 0.00 0.00 37.15 3.51
4931 10596 8.650143 ATGTAAATTTTGTCTACAAGGATGGT 57.350 30.769 0.00 0.00 37.15 3.55
4932 10597 8.472007 TGTAAATTTTGTCTACAAGGATGGTT 57.528 30.769 0.00 0.00 37.15 3.67
4933 10598 9.575868 TGTAAATTTTGTCTACAAGGATGGTTA 57.424 29.630 0.00 0.00 37.15 2.85
4934 10599 9.836076 GTAAATTTTGTCTACAAGGATGGTTAC 57.164 33.333 0.00 0.32 37.15 2.50
4935 10600 8.706322 AAATTTTGTCTACAAGGATGGTTACT 57.294 30.769 0.00 0.00 37.15 2.24
4936 10601 7.687941 ATTTTGTCTACAAGGATGGTTACTG 57.312 36.000 0.00 0.00 37.15 2.74
4937 10602 6.428083 TTTGTCTACAAGGATGGTTACTGA 57.572 37.500 0.00 0.00 37.15 3.41
4938 10603 5.401531 TGTCTACAAGGATGGTTACTGAC 57.598 43.478 0.00 0.00 0.00 3.51
4939 10604 4.082408 TGTCTACAAGGATGGTTACTGACG 60.082 45.833 0.00 0.00 0.00 4.35
4940 10605 4.082354 GTCTACAAGGATGGTTACTGACGT 60.082 45.833 0.00 0.00 0.00 4.34
4941 10606 3.764237 ACAAGGATGGTTACTGACGTT 57.236 42.857 0.00 0.00 0.00 3.99
5003 10668 5.546499 TGTTTGATACCCCTAGTCTTCTTGT 59.454 40.000 0.00 0.00 0.00 3.16
5023 10688 7.919690 TCTTGTAAGTTCATTTCTGTGTCAAG 58.080 34.615 0.00 0.00 0.00 3.02
5294 10964 8.668353 TCTGCATTTCTTCTGTTTCATATGTAC 58.332 33.333 1.90 3.46 0.00 2.90
5352 11022 8.012241 GTCATTTCACAGTTCACATCTAAGAAC 58.988 37.037 0.00 0.00 43.33 3.01
5539 11214 4.360563 ACTCTGCAATAGATTAACGGTCG 58.639 43.478 2.85 0.00 34.21 4.79
5602 11286 3.010420 GCTTAGAAGGAGCCGTTTCATT 58.990 45.455 0.00 0.00 34.06 2.57
5607 11291 3.253432 AGAAGGAGCCGTTTCATTTGAAC 59.747 43.478 0.00 0.00 33.13 3.18
5620 11304 5.710513 TCATTTGAACTGGTTCTGAATGG 57.289 39.130 24.46 15.42 40.26 3.16
5621 11305 5.139727 TCATTTGAACTGGTTCTGAATGGT 58.860 37.500 24.46 0.00 40.26 3.55
5623 11307 6.430925 TCATTTGAACTGGTTCTGAATGGTAG 59.569 38.462 24.46 12.31 40.26 3.18
5628 11312 6.430925 TGAACTGGTTCTGAATGGTAGATTTG 59.569 38.462 13.54 0.00 40.14 2.32
5637 11321 0.963355 TGGTAGATTTGGGCGGCAAC 60.963 55.000 12.47 0.00 0.00 4.17
5641 11325 0.328258 AGATTTGGGCGGCAACTACT 59.672 50.000 12.47 1.10 0.00 2.57
5645 11329 0.688487 TTGGGCGGCAACTACTAAGT 59.312 50.000 12.47 0.00 37.65 2.24
5658 11342 6.653740 GCAACTACTAAGTAAGGTGGATTTGT 59.346 38.462 0.00 0.00 33.75 2.83
5680 11364 5.475220 TGTTGTATGTGTTTGGGTAAGATGG 59.525 40.000 0.00 0.00 0.00 3.51
5728 11414 7.336396 AGAGTTGGTAAATTACACCTATGGTC 58.664 38.462 5.45 3.21 36.96 4.02
5731 11417 5.996644 TGGTAAATTACACCTATGGTCCTG 58.003 41.667 5.45 0.00 36.96 3.86
5737 11423 2.795329 ACACCTATGGTCCTGCAAAAG 58.205 47.619 0.00 0.00 31.02 2.27
5746 11432 2.397549 GTCCTGCAAAAGTGAATGCAC 58.602 47.619 0.00 0.00 46.87 4.57
5764 11482 2.027003 ACGGTCCGTGAAGTTTGAAA 57.973 45.000 18.08 0.00 39.18 2.69
5766 11484 3.731089 ACGGTCCGTGAAGTTTGAAATA 58.269 40.909 18.08 0.00 39.18 1.40
5772 11490 5.059221 GTCCGTGAAGTTTGAAATATTTGCG 59.941 40.000 5.17 0.00 0.00 4.85
5782 11500 5.690997 TGAAATATTTGCGGTGTACACAA 57.309 34.783 26.51 13.05 0.00 3.33
5828 11549 2.223876 ACCACAGAATTGCTTTGCAGTG 60.224 45.455 0.00 0.00 40.61 3.66
5835 11556 0.459934 TTGCTTTGCAGTGGTTGTGC 60.460 50.000 0.00 0.00 40.61 4.57
5880 11601 2.101750 TCATCCGCTTATTCGTAAGGCA 59.898 45.455 0.00 0.00 38.47 4.75
5968 11689 4.895224 AAAAGTTTCAGTCGGGAAGTTC 57.105 40.909 0.00 0.00 0.00 3.01
5986 11708 6.183360 GGAAGTTCACTTGCCATACTGAATAC 60.183 42.308 5.01 0.00 38.21 1.89
6205 11928 3.595709 CAAGTTGGTTGCAATTGCTTG 57.404 42.857 29.37 19.26 42.66 4.01
6213 11936 3.493176 GGTTGCAATTGCTTGGTTCTTCT 60.493 43.478 29.37 0.00 42.66 2.85
6214 11937 4.122046 GTTGCAATTGCTTGGTTCTTCTT 58.878 39.130 29.37 0.00 42.66 2.52
6215 11938 3.981211 TGCAATTGCTTGGTTCTTCTTC 58.019 40.909 29.37 0.00 42.66 2.87
6216 11939 3.384146 TGCAATTGCTTGGTTCTTCTTCA 59.616 39.130 29.37 2.61 42.66 3.02
6217 11940 3.737774 GCAATTGCTTGGTTCTTCTTCAC 59.262 43.478 23.21 0.00 38.21 3.18
6218 11941 4.737352 GCAATTGCTTGGTTCTTCTTCACA 60.737 41.667 23.21 0.00 38.21 3.58
6219 11942 4.843220 ATTGCTTGGTTCTTCTTCACAG 57.157 40.909 0.00 0.00 0.00 3.66
6220 11943 3.281727 TGCTTGGTTCTTCTTCACAGT 57.718 42.857 0.00 0.00 0.00 3.55
6221 11944 2.945008 TGCTTGGTTCTTCTTCACAGTG 59.055 45.455 0.00 0.00 0.00 3.66
6240 11963 1.066358 TGGAGTTGAGCTCATCTGCTG 60.066 52.381 32.99 0.00 45.88 4.41
6241 11964 1.008329 GAGTTGAGCTCATCTGCTGC 58.992 55.000 27.86 12.46 44.17 5.25
6242 11965 0.614294 AGTTGAGCTCATCTGCTGCT 59.386 50.000 23.43 8.61 44.17 4.24
6303 12026 3.596066 CTCCCTGCTGTGTGACCCG 62.596 68.421 0.00 0.00 0.00 5.28
6315 12038 0.391263 GTGACCCGAACCCTGATGAC 60.391 60.000 0.00 0.00 0.00 3.06
6463 12186 6.929049 AGTCTTGTTTGTAACATTCTCGATCA 59.071 34.615 0.00 0.00 41.79 2.92
6601 12324 2.780010 AGATAAATGTAGCCACCTGCCT 59.220 45.455 0.00 0.00 42.71 4.75
6602 12325 2.418368 TAAATGTAGCCACCTGCCTG 57.582 50.000 0.00 0.00 42.71 4.85
6604 12327 2.843912 AATGTAGCCACCTGCCTGCC 62.844 60.000 0.00 0.00 42.71 4.85
6605 12328 4.033776 GTAGCCACCTGCCTGCCA 62.034 66.667 0.00 0.00 42.71 4.92
6606 12329 4.033776 TAGCCACCTGCCTGCCAC 62.034 66.667 0.00 0.00 42.71 5.01
6608 12331 4.982701 GCCACCTGCCTGCCACTT 62.983 66.667 0.00 0.00 0.00 3.16
6609 12332 2.756400 CCACCTGCCTGCCACTTA 59.244 61.111 0.00 0.00 0.00 2.24
6610 12333 1.074775 CCACCTGCCTGCCACTTAA 59.925 57.895 0.00 0.00 0.00 1.85
6611 12334 0.539438 CCACCTGCCTGCCACTTAAA 60.539 55.000 0.00 0.00 0.00 1.52
6612 12335 1.549203 CACCTGCCTGCCACTTAAAT 58.451 50.000 0.00 0.00 0.00 1.40
6613 12336 1.895131 CACCTGCCTGCCACTTAAATT 59.105 47.619 0.00 0.00 0.00 1.82
6614 12337 1.895131 ACCTGCCTGCCACTTAAATTG 59.105 47.619 0.00 0.00 0.00 2.32
6615 12338 1.404583 CCTGCCTGCCACTTAAATTGC 60.405 52.381 0.00 0.00 0.00 3.56
6616 12339 1.547372 CTGCCTGCCACTTAAATTGCT 59.453 47.619 0.00 0.00 0.00 3.91
6617 12340 1.969923 TGCCTGCCACTTAAATTGCTT 59.030 42.857 0.00 0.00 0.00 3.91
6618 12341 3.161067 TGCCTGCCACTTAAATTGCTTA 58.839 40.909 0.00 0.00 0.00 3.09
6619 12342 3.056891 TGCCTGCCACTTAAATTGCTTAC 60.057 43.478 0.00 0.00 0.00 2.34
6620 12343 3.676049 GCCTGCCACTTAAATTGCTTACC 60.676 47.826 0.00 0.00 0.00 2.85
6621 12344 3.119137 CCTGCCACTTAAATTGCTTACCC 60.119 47.826 0.00 0.00 0.00 3.69
6622 12345 2.490115 TGCCACTTAAATTGCTTACCCG 59.510 45.455 0.00 0.00 0.00 5.28
6623 12346 2.490509 GCCACTTAAATTGCTTACCCGT 59.509 45.455 0.00 0.00 0.00 5.28
6624 12347 3.057104 GCCACTTAAATTGCTTACCCGTT 60.057 43.478 0.00 0.00 0.00 4.44
6625 12348 4.481463 CCACTTAAATTGCTTACCCGTTG 58.519 43.478 0.00 0.00 0.00 4.10
6626 12349 3.917985 CACTTAAATTGCTTACCCGTTGC 59.082 43.478 0.00 0.00 0.00 4.17
6627 12350 3.570550 ACTTAAATTGCTTACCCGTTGCA 59.429 39.130 0.00 0.00 34.69 4.08
6632 12355 3.460857 TTGCTTACCCGTTGCAATTTT 57.539 38.095 0.59 0.00 41.06 1.82
6633 12356 3.460857 TGCTTACCCGTTGCAATTTTT 57.539 38.095 0.59 0.00 33.48 1.94
6654 12377 6.852858 TTTTGTGCTTTAAATTGCTTACCC 57.147 33.333 1.68 0.00 0.00 3.69
6666 12389 1.946267 CTTACCCGTTGCGTGCTTT 59.054 52.632 0.00 0.00 0.00 3.51
6669 12392 4.999939 CCCGTTGCGTGCTTTGGC 63.000 66.667 0.00 0.00 39.26 4.52
6708 12431 2.019984 GGACACCCGTACTAGTACTGG 58.980 57.143 31.06 31.06 43.40 4.00
6710 12433 2.680339 GACACCCGTACTAGTACTGGTC 59.320 54.545 33.92 24.29 46.26 4.02
6711 12434 2.307098 ACACCCGTACTAGTACTGGTCT 59.693 50.000 33.92 25.08 46.26 3.85
6712 12435 2.681848 CACCCGTACTAGTACTGGTCTG 59.318 54.545 33.92 24.32 46.26 3.51
6731 12458 0.106708 GATCATGCGCAGGGGTTCTA 59.893 55.000 23.25 1.04 0.00 2.10
6748 12475 2.695359 TCTATCAGGTGGCGTCAAAAC 58.305 47.619 0.00 0.00 0.00 2.43
6753 12480 1.336440 CAGGTGGCGTCAAAACAATCA 59.664 47.619 0.00 0.00 0.00 2.57
6758 12485 4.384547 GGTGGCGTCAAAACAATCAATTAC 59.615 41.667 0.00 0.00 0.00 1.89
6765 12492 7.059488 GCGTCAAAACAATCAATTACAGTGTAG 59.941 37.037 2.68 0.00 0.00 2.74
6820 12709 7.749570 GCTTGCTGTGTATGAATATGATGATTC 59.250 37.037 0.00 0.00 36.53 2.52
6856 12745 6.658831 TCAAATTTGCGTCTTAGTTCAAGAG 58.341 36.000 13.54 0.00 44.02 2.85
6928 12817 1.071987 CAGGCTGTCCTCTGTGCAA 59.928 57.895 6.28 0.00 41.93 4.08
6932 12821 1.849976 GCTGTCCTCTGTGCAAGCAC 61.850 60.000 17.76 17.76 46.33 4.40
6957 12846 1.268488 TGTTCAGTGTGCATGCGTTTC 60.268 47.619 14.09 4.21 0.00 2.78
6960 12849 0.587768 CAGTGTGCATGCGTTTCTCA 59.412 50.000 14.09 2.56 0.00 3.27
6962 12851 0.385974 GTGTGCATGCGTTTCTCACC 60.386 55.000 14.09 0.00 0.00 4.02
6963 12852 1.154413 GTGCATGCGTTTCTCACCG 60.154 57.895 14.09 0.00 0.00 4.94
6978 12867 3.322828 TCTCACCGCACCTAAACTAACTT 59.677 43.478 0.00 0.00 0.00 2.66
7011 12900 4.014406 GGTGTTTGAATGGTAGGGTTAGG 58.986 47.826 0.00 0.00 0.00 2.69
7033 12922 7.530426 AGGTTGACAATAAATGCTCTTTCTT 57.470 32.000 0.00 0.00 0.00 2.52
7050 12939 7.699812 GCTCTTTCTTAATCATTTGGCTACTTG 59.300 37.037 0.00 0.00 0.00 3.16
7052 12941 7.888021 TCTTTCTTAATCATTTGGCTACTTGGA 59.112 33.333 0.00 0.00 0.00 3.53
7067 12956 2.649816 ACTTGGAACCCTATTTCCTGCT 59.350 45.455 3.66 0.00 44.89 4.24
7158 13047 1.378514 ACAGCCCGCCAATCGAATT 60.379 52.632 0.00 0.00 41.67 2.17
7233 13122 0.539051 AAGGAGCTGCGACTGCTTAT 59.461 50.000 10.25 3.10 45.29 1.73
7323 13213 2.597805 AGACGGGAGCGCGGATAT 60.598 61.111 8.83 0.00 0.00 1.63
7326 13216 3.680786 CGGGAGCGCGGATATGGA 61.681 66.667 8.83 0.00 0.00 3.41
7329 13219 1.608717 GGGAGCGCGGATATGGAGAT 61.609 60.000 8.83 0.00 0.00 2.75
7363 13257 1.388531 GTGTGAGAGGGAGGGAGGA 59.611 63.158 0.00 0.00 0.00 3.71
7375 13269 0.930726 AGGGAGGAAGAGGACGAGAT 59.069 55.000 0.00 0.00 0.00 2.75
7397 13291 1.258445 TTCGAGGAAGTGGGGAGAGC 61.258 60.000 0.00 0.00 0.00 4.09
7398 13292 2.896443 GAGGAAGTGGGGAGAGCG 59.104 66.667 0.00 0.00 0.00 5.03
7400 13294 1.950973 GAGGAAGTGGGGAGAGCGAC 61.951 65.000 0.00 0.00 0.00 5.19
7401 13295 1.985116 GGAAGTGGGGAGAGCGACT 60.985 63.158 0.00 0.00 0.00 4.18
7421 13327 3.743396 ACTGAGCGAGAGAAAAATGTGTC 59.257 43.478 0.00 0.00 0.00 3.67
7522 13428 6.239232 GCATCTAACCCGAACTAATCCTCTTA 60.239 42.308 0.00 0.00 0.00 2.10
7567 13473 5.370679 TGAGTCCAAACTAACCCAAACTAC 58.629 41.667 0.00 0.00 35.28 2.73
7569 13475 5.618236 AGTCCAAACTAACCCAAACTACTC 58.382 41.667 0.00 0.00 32.59 2.59
7570 13476 5.131475 AGTCCAAACTAACCCAAACTACTCA 59.869 40.000 0.00 0.00 32.59 3.41
7571 13477 6.002082 GTCCAAACTAACCCAAACTACTCAT 58.998 40.000 0.00 0.00 0.00 2.90
7572 13478 6.001460 TCCAAACTAACCCAAACTACTCATG 58.999 40.000 0.00 0.00 0.00 3.07
7573 13479 6.001460 CCAAACTAACCCAAACTACTCATGA 58.999 40.000 0.00 0.00 0.00 3.07
7574 13480 6.488683 CCAAACTAACCCAAACTACTCATGAA 59.511 38.462 0.00 0.00 0.00 2.57
7576 13482 7.506328 AACTAACCCAAACTACTCATGAAAC 57.494 36.000 0.00 0.00 0.00 2.78
7577 13483 6.002082 ACTAACCCAAACTACTCATGAAACC 58.998 40.000 0.00 0.00 0.00 3.27
7578 13484 4.447138 ACCCAAACTACTCATGAAACCA 57.553 40.909 0.00 0.00 0.00 3.67
7579 13485 4.798882 ACCCAAACTACTCATGAAACCAA 58.201 39.130 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 9.686683 ATGAATAGAAGGCTAAATACAACAGTT 57.313 29.630 0.00 0.00 0.00 3.16
76 77 6.653020 TGCTGAAGATGAATAGAAGGCTAAA 58.347 36.000 0.00 0.00 0.00 1.85
235 400 7.577807 CGTGCTATCTTGATAAGCTTACCCTAT 60.578 40.741 8.70 2.27 37.16 2.57
267 432 7.275920 TCTAGAATACATTCCTTTCTTCCAGC 58.724 38.462 0.00 0.00 37.51 4.85
298 463 3.065233 TGCAATGTGTGAGAAACTGACAC 59.935 43.478 12.89 12.89 45.99 3.67
310 475 3.319755 GGGAATTGAACTGCAATGTGTG 58.680 45.455 0.00 0.00 46.25 3.82
311 476 2.030007 CGGGAATTGAACTGCAATGTGT 60.030 45.455 0.00 0.00 46.25 3.72
338 503 2.355837 GGAGCGTGCGTCACAAGA 60.356 61.111 9.95 0.00 33.40 3.02
354 519 7.117454 CGTTCTAGTATCAAAAACGCTAATGG 58.883 38.462 0.00 0.00 36.66 3.16
355 520 7.117454 CCGTTCTAGTATCAAAAACGCTAATG 58.883 38.462 5.39 0.00 40.85 1.90
358 523 4.563976 GCCGTTCTAGTATCAAAAACGCTA 59.436 41.667 5.39 0.00 40.85 4.26
359 524 3.370061 GCCGTTCTAGTATCAAAAACGCT 59.630 43.478 5.39 0.00 40.85 5.07
360 525 3.370061 AGCCGTTCTAGTATCAAAAACGC 59.630 43.478 5.39 2.57 40.85 4.84
362 527 6.723131 AAGAGCCGTTCTAGTATCAAAAAC 57.277 37.500 0.00 0.00 34.14 2.43
365 530 8.461249 ACTATAAGAGCCGTTCTAGTATCAAA 57.539 34.615 0.00 0.00 34.14 2.69
366 531 9.736414 ATACTATAAGAGCCGTTCTAGTATCAA 57.264 33.333 7.43 0.00 31.51 2.57
367 532 9.736414 AATACTATAAGAGCCGTTCTAGTATCA 57.264 33.333 11.25 0.00 34.01 2.15
371 536 8.958506 CCATAATACTATAAGAGCCGTTCTAGT 58.041 37.037 0.00 0.00 34.14 2.57
372 537 9.175312 TCCATAATACTATAAGAGCCGTTCTAG 57.825 37.037 0.00 0.00 34.14 2.43
373 538 8.954350 GTCCATAATACTATAAGAGCCGTTCTA 58.046 37.037 0.00 0.00 34.14 2.10
375 540 7.034397 GGTCCATAATACTATAAGAGCCGTTC 58.966 42.308 0.00 0.00 0.00 3.95
376 541 6.349944 CGGTCCATAATACTATAAGAGCCGTT 60.350 42.308 0.00 0.00 0.00 4.44
378 543 5.356190 TCGGTCCATAATACTATAAGAGCCG 59.644 44.000 0.00 0.00 34.97 5.52
379 544 6.183360 CCTCGGTCCATAATACTATAAGAGCC 60.183 46.154 0.00 0.00 0.00 4.70
380 545 6.183360 CCCTCGGTCCATAATACTATAAGAGC 60.183 46.154 0.00 0.00 0.00 4.09
381 546 7.117397 TCCCTCGGTCCATAATACTATAAGAG 58.883 42.308 0.00 0.00 0.00 2.85
383 548 6.321690 CCTCCCTCGGTCCATAATACTATAAG 59.678 46.154 0.00 0.00 0.00 1.73
386 551 4.572223 CCCTCCCTCGGTCCATAATACTAT 60.572 50.000 0.00 0.00 0.00 2.12
387 552 3.245514 CCCTCCCTCGGTCCATAATACTA 60.246 52.174 0.00 0.00 0.00 1.82
388 553 2.492940 CCCTCCCTCGGTCCATAATACT 60.493 54.545 0.00 0.00 0.00 2.12
389 554 1.900486 CCCTCCCTCGGTCCATAATAC 59.100 57.143 0.00 0.00 0.00 1.89
390 555 1.790779 TCCCTCCCTCGGTCCATAATA 59.209 52.381 0.00 0.00 0.00 0.98
392 557 0.105658 CTCCCTCCCTCGGTCCATAA 60.106 60.000 0.00 0.00 0.00 1.90
393 558 1.294426 ACTCCCTCCCTCGGTCCATA 61.294 60.000 0.00 0.00 0.00 2.74
394 559 1.294426 TACTCCCTCCCTCGGTCCAT 61.294 60.000 0.00 0.00 0.00 3.41
396 561 1.152715 CTACTCCCTCCCTCGGTCC 60.153 68.421 0.00 0.00 0.00 4.46
397 562 1.829096 GCTACTCCCTCCCTCGGTC 60.829 68.421 0.00 0.00 0.00 4.79
400 565 0.747852 GAAAGCTACTCCCTCCCTCG 59.252 60.000 0.00 0.00 0.00 4.63
401 566 2.168458 AGAAAGCTACTCCCTCCCTC 57.832 55.000 0.00 0.00 0.00 4.30
402 567 2.192263 CAAGAAAGCTACTCCCTCCCT 58.808 52.381 0.00 0.00 0.00 4.20
404 569 2.303311 ACACAAGAAAGCTACTCCCTCC 59.697 50.000 0.00 0.00 0.00 4.30
405 570 3.686916 ACACAAGAAAGCTACTCCCTC 57.313 47.619 0.00 0.00 0.00 4.30
408 1034 6.426937 TGATGTTAACACAAGAAAGCTACTCC 59.573 38.462 11.22 0.00 36.16 3.85
428 1054 2.418746 GCCTGACAACCGATAGTGATGT 60.419 50.000 0.00 0.00 0.00 3.06
608 2820 8.353684 CGCGTCTCCTCCTGATATTATAATAAT 58.646 37.037 9.20 0.00 0.00 1.28
649 2861 0.104304 AACTGACGTGGAGTGACACC 59.896 55.000 0.84 0.00 38.11 4.16
652 2864 1.609555 AGAGAACTGACGTGGAGTGAC 59.390 52.381 0.00 0.00 0.00 3.67
681 2893 5.525012 TCTCTCAATCAACGCCAATAGATTG 59.475 40.000 0.00 0.00 45.29 2.67
685 2897 5.111989 TCTTCTCTCAATCAACGCCAATAG 58.888 41.667 0.00 0.00 0.00 1.73
816 3036 4.429522 TGCGGTGCCATGGCTGAT 62.430 61.111 35.53 0.00 42.51 2.90
924 3144 1.175347 TGCTCGCTGTCTGTCTGTCT 61.175 55.000 0.00 0.00 0.00 3.41
925 3145 0.319040 TTGCTCGCTGTCTGTCTGTC 60.319 55.000 0.00 0.00 0.00 3.51
926 3146 0.104855 TTTGCTCGCTGTCTGTCTGT 59.895 50.000 0.00 0.00 0.00 3.41
927 3147 0.788995 CTTTGCTCGCTGTCTGTCTG 59.211 55.000 0.00 0.00 0.00 3.51
1071 3297 0.250338 ACGGAACAAACCTCTGGCTC 60.250 55.000 0.00 0.00 0.00 4.70
1072 3298 0.182775 AACGGAACAAACCTCTGGCT 59.817 50.000 0.00 0.00 0.00 4.75
1170 3415 3.670377 GCTCGCCGCCCTGTTTTT 61.670 61.111 0.00 0.00 0.00 1.94
1226 3471 2.119495 GGGTCCTTCTGCAGATCCTTA 58.881 52.381 19.04 0.25 30.01 2.69
1250 3495 2.187685 CCTGCGCTGCATGAGGTA 59.812 61.111 9.73 0.00 38.13 3.08
1294 3548 4.041567 TGTCCTAGAAGTGCAAAATCCAGA 59.958 41.667 0.00 0.00 0.00 3.86
1304 3558 0.543749 AGGGCATGTCCTAGAAGTGC 59.456 55.000 19.81 0.00 34.92 4.40
1305 3559 2.026822 ACAAGGGCATGTCCTAGAAGTG 60.027 50.000 21.72 16.34 35.80 3.16
1306 3560 2.026822 CACAAGGGCATGTCCTAGAAGT 60.027 50.000 21.72 13.22 35.80 3.01
1307 3561 2.026822 ACACAAGGGCATGTCCTAGAAG 60.027 50.000 21.72 12.55 35.80 2.85
1308 3562 1.985159 ACACAAGGGCATGTCCTAGAA 59.015 47.619 21.72 0.00 35.80 2.10
1310 3564 1.278985 TCACACAAGGGCATGTCCTAG 59.721 52.381 21.72 15.16 35.80 3.02
1311 3565 1.357137 TCACACAAGGGCATGTCCTA 58.643 50.000 21.72 0.00 35.80 2.94
1312 3566 0.478072 TTCACACAAGGGCATGTCCT 59.522 50.000 14.79 14.79 39.17 3.85
1313 3567 0.883833 CTTCACACAAGGGCATGTCC 59.116 55.000 8.79 8.79 0.00 4.02
1320 3588 3.692257 ATCTGACTCTTCACACAAGGG 57.308 47.619 0.00 0.00 0.00 3.95
1329 3597 4.474226 ACGCACAAAAATCTGACTCTTC 57.526 40.909 0.00 0.00 0.00 2.87
1349 3617 4.310769 AGTCATTCCGAAGCATAGCATAC 58.689 43.478 0.00 0.00 0.00 2.39
1403 3673 1.812507 ATTCTTTCGCGGCCGGTAC 60.813 57.895 29.38 9.53 34.56 3.34
1411 3681 1.384409 CAAGCAAAGCATTCTTTCGCG 59.616 47.619 0.00 0.00 40.35 5.87
1413 3683 3.631144 TGTCAAGCAAAGCATTCTTTCG 58.369 40.909 0.00 0.00 40.35 3.46
1432 3704 1.276421 AGCGTCACTCCAAATAGCTGT 59.724 47.619 0.00 0.00 31.76 4.40
1453 3725 0.039472 TTGGGGCAAGCAGAGCATAA 59.961 50.000 0.00 0.00 0.00 1.90
1483 3755 1.639298 GCACACATCGCACCTTCTCC 61.639 60.000 0.00 0.00 0.00 3.71
1567 3839 3.548770 TGATCCAAGTCCAGATTCATGC 58.451 45.455 0.00 0.00 0.00 4.06
1590 3862 2.860136 CACATGTCAGTACATAGCACCG 59.140 50.000 0.00 0.00 44.70 4.94
1594 3866 2.158900 AGGCCACATGTCAGTACATAGC 60.159 50.000 5.01 0.00 44.70 2.97
1595 3867 3.827008 AGGCCACATGTCAGTACATAG 57.173 47.619 5.01 0.00 44.70 2.23
1600 3872 2.949177 AACAAGGCCACATGTCAGTA 57.051 45.000 5.01 0.00 0.00 2.74
1616 3888 0.881159 CCTGTGACGCGGGTTTAACA 60.881 55.000 12.47 11.03 38.84 2.41
1625 3897 1.205064 CTTCTTTGCCTGTGACGCG 59.795 57.895 3.53 3.53 0.00 6.01
1640 3912 0.679002 TCTCATTGCAGGCAGCCTTC 60.679 55.000 12.86 7.95 44.83 3.46
1666 3938 1.792949 CCGCATACCTAACAATCGAGC 59.207 52.381 0.00 0.00 0.00 5.03
1726 3998 0.478072 AACCCTTGTGCATCACCTGA 59.522 50.000 0.00 0.00 32.73 3.86
1752 4024 5.183904 ACATCAAGCTTGGTCCTCAATAAAC 59.816 40.000 25.73 0.00 34.45 2.01
1824 4097 3.144506 CACATATCAAGCATGGTCCTCC 58.855 50.000 0.00 0.00 0.00 4.30
1915 4188 2.748058 TTTCACTTCCCGGCCTCTGC 62.748 60.000 0.00 0.00 0.00 4.26
1916 4189 0.035056 ATTTCACTTCCCGGCCTCTG 60.035 55.000 0.00 0.00 0.00 3.35
1917 4190 0.698818 AATTTCACTTCCCGGCCTCT 59.301 50.000 0.00 0.00 0.00 3.69
1918 4191 1.095600 GAATTTCACTTCCCGGCCTC 58.904 55.000 0.00 0.00 0.00 4.70
1919 4192 0.698818 AGAATTTCACTTCCCGGCCT 59.301 50.000 0.00 0.00 0.00 5.19
1920 4193 1.095600 GAGAATTTCACTTCCCGGCC 58.904 55.000 0.00 0.00 0.00 6.13
1923 4196 1.751437 GGGGAGAATTTCACTTCCCG 58.249 55.000 13.34 0.00 42.52 5.14
1940 4219 3.011257 TCTCCAGAAACCTTATTTGGGGG 59.989 47.826 0.00 0.00 30.19 5.40
2001 4321 2.515057 GCCGACAACCACCACACA 60.515 61.111 0.00 0.00 0.00 3.72
2011 4331 2.515057 AACAACAGCGGCCGACAA 60.515 55.556 33.48 0.00 0.00 3.18
2019 4339 1.731613 CTGCCATGCAACAACAGCG 60.732 57.895 0.00 0.00 38.41 5.18
2052 4372 2.203280 CACCACCGCCAAACCAGA 60.203 61.111 0.00 0.00 0.00 3.86
2054 4374 2.043852 AACACCACCGCCAAACCA 60.044 55.556 0.00 0.00 0.00 3.67
2063 4383 0.751643 AACACAGCCAGAACACCACC 60.752 55.000 0.00 0.00 0.00 4.61
2064 4384 0.663153 GAACACAGCCAGAACACCAC 59.337 55.000 0.00 0.00 0.00 4.16
2065 4385 0.546122 AGAACACAGCCAGAACACCA 59.454 50.000 0.00 0.00 0.00 4.17
2066 4386 1.334869 CAAGAACACAGCCAGAACACC 59.665 52.381 0.00 0.00 0.00 4.16
2067 4387 1.268743 GCAAGAACACAGCCAGAACAC 60.269 52.381 0.00 0.00 0.00 3.32
2068 4388 1.024271 GCAAGAACACAGCCAGAACA 58.976 50.000 0.00 0.00 0.00 3.18
2069 4389 1.265365 GAGCAAGAACACAGCCAGAAC 59.735 52.381 0.00 0.00 0.00 3.01
2070 4390 1.597742 GAGCAAGAACACAGCCAGAA 58.402 50.000 0.00 0.00 0.00 3.02
2071 4391 0.601046 CGAGCAAGAACACAGCCAGA 60.601 55.000 0.00 0.00 0.00 3.86
2072 4392 0.601046 TCGAGCAAGAACACAGCCAG 60.601 55.000 0.00 0.00 0.00 4.85
2073 4393 0.035317 ATCGAGCAAGAACACAGCCA 59.965 50.000 0.00 0.00 0.00 4.75
2089 4409 0.942252 CATCAGGTGATGCCACATCG 59.058 55.000 7.02 0.00 44.44 3.84
2102 4422 2.046023 TCTTGCGGCACCATCAGG 60.046 61.111 0.05 0.00 42.21 3.86
2117 4437 2.990479 GTCCCATCGCCCAACTCT 59.010 61.111 0.00 0.00 0.00 3.24
2143 4463 1.491505 GCGCTACCATCGAAGAAGCC 61.492 60.000 0.00 0.87 43.58 4.35
2152 4472 2.279517 CACGGAGGCGCTACCATC 60.280 66.667 19.41 6.44 43.14 3.51
2153 4473 3.849951 CCACGGAGGCGCTACCAT 61.850 66.667 19.41 5.38 43.14 3.55
2157 4477 1.252904 ACTTAACCACGGAGGCGCTA 61.253 55.000 7.64 0.00 43.14 4.26
2158 4478 2.264794 CTTAACCACGGAGGCGCT 59.735 61.111 7.64 0.00 43.14 5.92
2160 4480 1.740296 CCACTTAACCACGGAGGCG 60.740 63.158 0.00 0.00 43.14 5.52
2169 4490 3.054361 ACCACTCCATCATCCACTTAACC 60.054 47.826 0.00 0.00 0.00 2.85
2172 4493 3.054434 CCAACCACTCCATCATCCACTTA 60.054 47.826 0.00 0.00 0.00 2.24
2185 4506 0.179018 ACTGCAAGACCCAACCACTC 60.179 55.000 0.00 0.00 37.43 3.51
2186 4507 0.466189 CACTGCAAGACCCAACCACT 60.466 55.000 0.00 0.00 37.43 4.00
2218 4539 1.675310 CTGTTGCCGCCATCCTCAA 60.675 57.895 0.00 0.00 0.00 3.02
2220 4541 1.153086 ATCTGTTGCCGCCATCCTC 60.153 57.895 0.00 0.00 0.00 3.71
2224 4545 1.452651 CCTGATCTGTTGCCGCCAT 60.453 57.895 0.00 0.00 0.00 4.40
2227 4548 1.796796 GAACCTGATCTGTTGCCGC 59.203 57.895 6.01 0.00 0.00 6.53
2256 4599 8.702872 CTCTAGAAGAGACACATGTCACTCACT 61.703 44.444 22.54 21.14 45.07 3.41
2267 4610 2.085320 GACGCCTCTAGAAGAGACACA 58.915 52.381 5.50 0.00 45.07 3.72
2268 4611 2.085320 TGACGCCTCTAGAAGAGACAC 58.915 52.381 5.50 0.00 45.07 3.67
2279 4624 2.186384 GCATGCTCTGACGCCTCT 59.814 61.111 11.37 0.00 0.00 3.69
2440 4999 2.805353 CCTTCGGTCACTGACGCG 60.805 66.667 3.53 3.53 32.65 6.01
2454 5020 1.689233 TCCCATACAGCCTCGCCTT 60.689 57.895 0.00 0.00 0.00 4.35
2464 5030 3.056107 CGGAAGTCAAGAAGTCCCATACA 60.056 47.826 0.00 0.00 0.00 2.29
2476 5043 2.552743 GGAAAAGGAACCGGAAGTCAAG 59.447 50.000 9.46 0.00 0.00 3.02
2627 5195 1.377725 CCTTCAGCAAGGGCACGAT 60.378 57.895 0.00 0.00 45.27 3.73
2776 6775 2.573609 CTAGACAAGGTTCCCCGCCG 62.574 65.000 0.00 0.00 35.12 6.46
2777 6776 1.221021 CTAGACAAGGTTCCCCGCC 59.779 63.158 0.00 0.00 35.12 6.13
2778 6777 1.449778 GCTAGACAAGGTTCCCCGC 60.450 63.158 0.00 0.00 35.12 6.13
2779 6778 1.221021 GGCTAGACAAGGTTCCCCG 59.779 63.158 0.00 0.00 35.12 5.73
2780 6779 1.608154 GGGCTAGACAAGGTTCCCC 59.392 63.158 0.00 0.00 0.00 4.81
2781 6780 1.221021 CGGGCTAGACAAGGTTCCC 59.779 63.158 0.00 0.00 0.00 3.97
2782 6781 0.175989 CTCGGGCTAGACAAGGTTCC 59.824 60.000 0.00 0.00 0.00 3.62
2793 6792 1.381327 CCTTGTCCTCCTCGGGCTA 60.381 63.158 0.00 0.00 38.58 3.93
2806 6805 0.842030 TCATCAGCCTGGTCCCTTGT 60.842 55.000 0.00 0.00 0.00 3.16
2835 6834 1.372087 CCCCTCTTGCATTGAGTCGC 61.372 60.000 13.79 0.00 0.00 5.19
2842 6841 1.454479 CATCGGCCCCTCTTGCATT 60.454 57.895 0.00 0.00 0.00 3.56
2847 6846 2.150051 GGGATCATCGGCCCCTCTT 61.150 63.158 0.00 0.00 38.45 2.85
2886 6885 1.529309 GGGTGAGAGCCAGATTCCC 59.471 63.158 0.00 0.00 35.40 3.97
2902 6901 3.010420 GGTTCAGAATTTCTTCGAGGGG 58.990 50.000 0.00 0.00 36.45 4.79
2903 6902 3.674997 TGGTTCAGAATTTCTTCGAGGG 58.325 45.455 0.00 0.00 36.45 4.30
2909 6911 4.731313 ACCTCCTGGTTCAGAATTTCTT 57.269 40.909 0.00 0.00 46.05 2.52
2930 6932 2.101783 CACTTGCTATCAATGGGGCAA 58.898 47.619 0.00 0.00 41.47 4.52
2950 6952 5.163713 GGGTTCTTGTAGATTGAGATTGCAC 60.164 44.000 0.00 0.00 0.00 4.57
2975 6977 2.768253 TGTTGCGATCATGGAGAACT 57.232 45.000 0.00 0.00 0.00 3.01
2978 6980 1.338960 TGCTTGTTGCGATCATGGAGA 60.339 47.619 0.00 0.00 46.63 3.71
2979 6981 1.089112 TGCTTGTTGCGATCATGGAG 58.911 50.000 0.00 0.00 46.63 3.86
2992 6994 1.615883 AGCGGAGATCGATATGCTTGT 59.384 47.619 9.90 0.00 42.43 3.16
3020 7022 4.261801 CGGTCCCATTACTGTTCTCAATT 58.738 43.478 0.00 0.00 0.00 2.32
3030 7032 1.262640 AACTCCGCGGTCCCATTACT 61.263 55.000 27.15 0.00 0.00 2.24
3037 7039 2.582498 CGATGAACTCCGCGGTCC 60.582 66.667 27.15 12.99 0.00 4.46
3043 7045 3.064079 TTCATGCCGATGAACTCCG 57.936 52.632 0.00 0.00 42.56 4.63
3065 7067 3.007723 TCATCAGGATATCAGCCTTCTGC 59.992 47.826 4.83 0.00 40.13 4.26
3066 7068 4.886496 TCATCAGGATATCAGCCTTCTG 57.114 45.455 4.83 1.79 41.67 3.02
3067 7069 4.906664 ACTTCATCAGGATATCAGCCTTCT 59.093 41.667 4.83 0.00 32.12 2.85
3068 7070 5.226194 ACTTCATCAGGATATCAGCCTTC 57.774 43.478 4.83 0.00 32.12 3.46
3069 7071 4.041444 GGACTTCATCAGGATATCAGCCTT 59.959 45.833 4.83 0.00 32.12 4.35
3070 7072 3.582208 GGACTTCATCAGGATATCAGCCT 59.418 47.826 4.83 0.00 35.75 4.58
3071 7073 3.307339 GGGACTTCATCAGGATATCAGCC 60.307 52.174 4.83 0.00 0.00 4.85
3072 7074 3.582208 AGGGACTTCATCAGGATATCAGC 59.418 47.826 4.83 0.00 27.25 4.26
3126 7129 0.317854 GATGTCGACGATGCCGATCA 60.318 55.000 11.62 0.00 38.38 2.92
3158 7161 1.132849 TCTCCCTCTTCAACCCTGTCA 60.133 52.381 0.00 0.00 0.00 3.58
3172 7175 1.668826 TAACAGGCCACAATCTCCCT 58.331 50.000 5.01 0.00 0.00 4.20
3174 7177 2.492088 GGTTTAACAGGCCACAATCTCC 59.508 50.000 5.01 0.00 0.00 3.71
3237 7240 3.027412 GTTTTTGGGTTGGGCCAAAAAT 58.973 40.909 22.82 0.00 46.47 1.82
3270 7273 2.359975 ACGGTAAAGGGCTGCTGC 60.360 61.111 7.10 7.10 38.76 5.25
3271 7274 2.100631 CGACGGTAAAGGGCTGCTG 61.101 63.158 0.00 0.00 0.00 4.41
3272 7275 2.264794 CGACGGTAAAGGGCTGCT 59.735 61.111 0.00 0.00 0.00 4.24
3328 7331 1.514553 GCATCCTCTGGGCAAAAGC 59.485 57.895 0.00 0.00 0.00 3.51
3344 7347 1.583495 CGAGGAGTGTACAGACCGCA 61.583 60.000 17.28 0.00 0.00 5.69
3354 7357 1.030457 ACAAAGTCGTCGAGGAGTGT 58.970 50.000 15.71 13.18 0.00 3.55
3361 7364 1.336424 TGCATGCTACAAAGTCGTCGA 60.336 47.619 20.33 0.00 0.00 4.20
3453 7464 7.540400 GCTCTTTCTTCCTGCTTTTATTTCTTC 59.460 37.037 0.00 0.00 0.00 2.87
3466 7477 3.819902 AGCTTTTCTGCTCTTTCTTCCTG 59.180 43.478 0.00 0.00 39.34 3.86
3499 7510 2.331194 AGACATTGAATTTTGCGCTGC 58.669 42.857 9.73 0.00 0.00 5.25
3530 7541 2.591715 ACGAGCTGTGGGCACAAC 60.592 61.111 0.00 0.00 44.79 3.32
3548 7559 3.074412 CTGTGTCATGTTACCCTGAACC 58.926 50.000 0.00 0.00 0.00 3.62
3610 7622 6.709018 TCTCCGTGAATCACTGTGATATTA 57.291 37.500 22.53 9.97 35.76 0.98
3646 7658 1.927174 CGTTTGTCAGATCGCCTAAGG 59.073 52.381 0.00 0.00 0.00 2.69
3675 7687 4.098044 ACTTACAGTATCCACCATGACGAG 59.902 45.833 0.00 0.00 0.00 4.18
3738 7752 3.598782 ACTAAACCCCACCAAATATCCCA 59.401 43.478 0.00 0.00 0.00 4.37
3754 7768 1.541588 CAGGCCAGCTTGGAACTAAAC 59.458 52.381 5.01 0.00 40.96 2.01
3773 7787 0.394216 ATGGCTGCCGCTTATGTTCA 60.394 50.000 14.98 0.00 36.09 3.18
3840 7854 8.594881 AAGTTACAACTGAAGTGTATTCAGAG 57.405 34.615 21.08 15.31 46.57 3.35
3905 7919 7.290857 TCTGAATCTTACTGTTAAACGATGC 57.709 36.000 0.00 0.00 0.00 3.91
3962 7976 4.324254 CCCAGAAATAAGTCAAGCTACCCA 60.324 45.833 0.00 0.00 0.00 4.51
4042 8057 5.448768 GCGTTGACATAGCTAGTTCTAGTGA 60.449 44.000 0.00 0.00 0.00 3.41
4062 8077 0.470766 TACCCACAGAAACCAGCGTT 59.529 50.000 0.00 0.00 0.00 4.84
4272 8289 0.036010 GTGAGCTGTACCCTGCATGT 60.036 55.000 0.00 0.00 37.95 3.21
4273 8290 0.745845 GGTGAGCTGTACCCTGCATG 60.746 60.000 0.00 0.00 37.95 4.06
4274 8291 1.604378 GGTGAGCTGTACCCTGCAT 59.396 57.895 0.00 0.00 37.95 3.96
4275 8292 3.068881 GGTGAGCTGTACCCTGCA 58.931 61.111 0.00 0.00 37.95 4.41
4303 8320 1.571919 CCAACCTAGTACTGCGATGC 58.428 55.000 5.39 0.00 0.00 3.91
4311 8328 3.206150 CCATGTCATGCCAACCTAGTAC 58.794 50.000 7.35 0.00 0.00 2.73
4342 8531 8.177119 ACAGTTTGCTACATTCTTTCCAATAA 57.823 30.769 0.00 0.00 0.00 1.40
4348 8537 4.082733 GGGGACAGTTTGCTACATTCTTTC 60.083 45.833 0.00 0.00 0.00 2.62
4349 8538 3.826729 GGGGACAGTTTGCTACATTCTTT 59.173 43.478 0.00 0.00 0.00 2.52
4350 8539 3.074538 AGGGGACAGTTTGCTACATTCTT 59.925 43.478 0.00 0.00 0.00 2.52
4351 8540 2.644798 AGGGGACAGTTTGCTACATTCT 59.355 45.455 0.00 0.00 0.00 2.40
4352 8541 3.073274 AGGGGACAGTTTGCTACATTC 57.927 47.619 0.00 0.00 0.00 2.67
4353 8542 4.018415 ACATAGGGGACAGTTTGCTACATT 60.018 41.667 0.00 0.00 0.00 2.71
4354 8543 3.523564 ACATAGGGGACAGTTTGCTACAT 59.476 43.478 0.00 0.00 0.00 2.29
4355 8544 2.910319 ACATAGGGGACAGTTTGCTACA 59.090 45.455 0.00 0.00 0.00 2.74
4356 8545 3.629142 ACATAGGGGACAGTTTGCTAC 57.371 47.619 0.00 0.00 0.00 3.58
4357 8546 4.288626 AGAAACATAGGGGACAGTTTGCTA 59.711 41.667 0.00 0.00 33.97 3.49
4358 8547 3.074538 AGAAACATAGGGGACAGTTTGCT 59.925 43.478 0.00 0.00 33.97 3.91
4359 8548 3.421844 AGAAACATAGGGGACAGTTTGC 58.578 45.455 0.00 0.00 33.97 3.68
4382 8571 4.711846 AGTGAGATATCTGTTGTGCCAGTA 59.288 41.667 10.74 0.00 34.02 2.74
4390 8579 8.766151 CATCAGATTGAAGTGAGATATCTGTTG 58.234 37.037 10.74 0.00 41.69 3.33
4391 8580 7.932491 CCATCAGATTGAAGTGAGATATCTGTT 59.068 37.037 10.74 0.46 41.69 3.16
4392 8581 7.070946 ACCATCAGATTGAAGTGAGATATCTGT 59.929 37.037 10.74 0.00 41.69 3.41
4433 8622 7.280876 AGTTGAGACAATAATACAATGCACGAT 59.719 33.333 0.00 0.00 0.00 3.73
4535 8725 2.295909 GTCACAAGCATGGCCAAACTTA 59.704 45.455 19.91 5.81 0.00 2.24
4543 8733 2.223433 GCAGAATAGTCACAAGCATGGC 60.223 50.000 0.00 0.00 0.00 4.40
4583 10243 9.212641 GAGCTCATAAGATTGCATATTCAAGTA 57.787 33.333 9.40 0.00 0.00 2.24
4761 10426 4.588951 TGTACCCTGAGATAATTCTGCGAT 59.411 41.667 0.00 0.00 30.30 4.58
4762 10427 3.958147 TGTACCCTGAGATAATTCTGCGA 59.042 43.478 0.00 0.00 30.30 5.10
4815 10480 7.335673 TGCGGTCAAGTGAGAAATATTAATTGA 59.664 33.333 0.00 0.00 0.00 2.57
4830 10495 4.539152 GCATTGTGCGGTCAAGTG 57.461 55.556 0.00 0.00 31.71 3.16
4861 10526 1.981254 AACTGGATTGCAAATTCGCG 58.019 45.000 1.71 0.00 33.35 5.87
4871 10536 3.017048 TGGCCCAAGATAACTGGATTG 57.983 47.619 0.00 0.00 0.00 2.67
4919 10584 4.451629 ACGTCAGTAACCATCCTTGTAG 57.548 45.455 0.00 0.00 0.00 2.74
4920 10585 4.877378 AACGTCAGTAACCATCCTTGTA 57.123 40.909 0.00 0.00 0.00 2.41
4921 10586 3.764237 AACGTCAGTAACCATCCTTGT 57.236 42.857 0.00 0.00 0.00 3.16
4922 10587 5.235516 ACTAAACGTCAGTAACCATCCTTG 58.764 41.667 1.14 0.00 0.00 3.61
4923 10588 5.476614 GACTAAACGTCAGTAACCATCCTT 58.523 41.667 2.98 0.00 42.37 3.36
4924 10589 5.069501 GACTAAACGTCAGTAACCATCCT 57.930 43.478 2.98 0.00 42.37 3.24
5003 10668 9.151471 GCTATACTTGACACAGAAATGAACTTA 57.849 33.333 0.00 0.00 0.00 2.24
5023 10688 9.368674 TCTAATAGACATGTCGACTAGCTATAC 57.631 37.037 19.85 0.00 34.09 1.47
5245 10910 6.876257 AGAGAAACAACTGACAATTAGGCTAG 59.124 38.462 0.00 0.00 0.00 3.42
5320 10990 4.141733 TGTGAACTGTGAAATGACCTCAGA 60.142 41.667 0.00 0.00 0.00 3.27
5352 11022 1.273606 ACCACATCTGTCAGAGTTCCG 59.726 52.381 8.82 0.00 0.00 4.30
5595 11270 6.421801 CCATTCAGAACCAGTTCAAATGAAAC 59.578 38.462 25.04 0.00 41.88 2.78
5602 11286 5.560722 TCTACCATTCAGAACCAGTTCAA 57.439 39.130 12.76 0.10 41.84 2.69
5607 11291 4.641989 CCCAAATCTACCATTCAGAACCAG 59.358 45.833 0.00 0.00 0.00 4.00
5620 11304 1.669265 GTAGTTGCCGCCCAAATCTAC 59.331 52.381 0.00 0.00 34.68 2.59
5621 11305 1.557832 AGTAGTTGCCGCCCAAATCTA 59.442 47.619 0.00 0.00 34.68 1.98
5623 11307 2.032680 TAGTAGTTGCCGCCCAAATC 57.967 50.000 0.00 0.00 34.68 2.17
5628 11312 2.547826 CTTACTTAGTAGTTGCCGCCC 58.452 52.381 0.00 0.00 35.78 6.13
5637 11321 9.886132 ATACAACAAATCCACCTTACTTAGTAG 57.114 33.333 0.00 0.00 0.00 2.57
5641 11325 7.940137 ACACATACAACAAATCCACCTTACTTA 59.060 33.333 0.00 0.00 0.00 2.24
5645 11329 7.429633 CAAACACATACAACAAATCCACCTTA 58.570 34.615 0.00 0.00 0.00 2.69
5658 11342 5.013547 CCCATCTTACCCAAACACATACAA 58.986 41.667 0.00 0.00 0.00 2.41
5711 11397 5.702065 TGCAGGACCATAGGTGTAATTTA 57.298 39.130 0.00 0.00 35.25 1.40
5719 11405 2.375174 TCACTTTTGCAGGACCATAGGT 59.625 45.455 0.00 0.00 39.44 3.08
5721 11407 4.676196 GCATTCACTTTTGCAGGACCATAG 60.676 45.833 0.00 0.00 38.72 2.23
5723 11409 2.028748 GCATTCACTTTTGCAGGACCAT 60.029 45.455 0.00 0.00 38.72 3.55
5731 11417 1.408422 GACCGTGCATTCACTTTTGC 58.592 50.000 0.00 0.00 40.99 3.68
5746 11432 4.939509 ATATTTCAAACTTCACGGACCG 57.060 40.909 13.61 13.61 0.00 4.79
5747 11433 5.344933 GCAAATATTTCAAACTTCACGGACC 59.655 40.000 0.00 0.00 0.00 4.46
5748 11434 5.059221 CGCAAATATTTCAAACTTCACGGAC 59.941 40.000 0.00 0.00 0.00 4.79
5750 11436 4.323336 CCGCAAATATTTCAAACTTCACGG 59.677 41.667 0.00 0.00 0.00 4.94
5752 11438 5.689961 ACACCGCAAATATTTCAAACTTCAC 59.310 36.000 0.00 0.00 0.00 3.18
5795 11516 6.040842 AGCAATTCTGTGGTTCTAAACAACAT 59.959 34.615 0.73 0.00 44.00 2.71
5796 11517 5.359576 AGCAATTCTGTGGTTCTAAACAACA 59.640 36.000 0.46 0.46 42.88 3.33
5805 11526 3.054878 CTGCAAAGCAATTCTGTGGTTC 58.945 45.455 0.00 0.00 38.23 3.62
5809 11530 2.223876 ACCACTGCAAAGCAATTCTGTG 60.224 45.455 0.00 0.00 38.41 3.66
5828 11549 0.530288 ATTAATGTGGCCGCACAACC 59.470 50.000 23.94 0.00 38.69 3.77
5835 11556 3.541632 ACCTAAGTGATTAATGTGGCCG 58.458 45.455 0.00 0.00 0.00 6.13
5968 11689 4.516698 GGATGGTATTCAGTATGGCAAGTG 59.483 45.833 0.00 0.00 36.16 3.16
5986 11708 9.868277 TTTTTGTAATGTAAAAGCTATGGATGG 57.132 29.630 0.00 0.00 0.00 3.51
6196 11919 4.935702 TGTGAAGAAGAACCAAGCAATTG 58.064 39.130 0.00 0.00 0.00 2.32
6205 11928 3.477210 ACTCCACTGTGAAGAAGAACC 57.523 47.619 9.86 0.00 0.00 3.62
6213 11936 1.762370 TGAGCTCAACTCCACTGTGAA 59.238 47.619 15.67 0.00 45.61 3.18
6214 11937 1.413118 TGAGCTCAACTCCACTGTGA 58.587 50.000 15.67 0.00 45.61 3.58
6215 11938 2.028294 AGATGAGCTCAACTCCACTGTG 60.028 50.000 22.50 0.00 45.61 3.66
6216 11939 2.028294 CAGATGAGCTCAACTCCACTGT 60.028 50.000 22.43 1.67 45.61 3.55
6217 11940 2.619147 CAGATGAGCTCAACTCCACTG 58.381 52.381 22.43 17.68 45.61 3.66
6218 11941 1.066286 GCAGATGAGCTCAACTCCACT 60.066 52.381 22.43 11.20 45.61 4.00
6219 11942 1.066286 AGCAGATGAGCTCAACTCCAC 60.066 52.381 22.43 14.89 45.61 4.02
6220 11943 1.066358 CAGCAGATGAGCTCAACTCCA 60.066 52.381 22.43 0.00 45.61 3.86
6221 11944 1.654317 CAGCAGATGAGCTCAACTCC 58.346 55.000 22.43 14.91 45.61 3.85
6240 11963 3.379372 TGTATGTAACCCGACAGAGTAGC 59.621 47.826 0.00 0.00 31.51 3.58
6241 11964 5.520632 CATGTATGTAACCCGACAGAGTAG 58.479 45.833 0.00 0.00 31.51 2.57
6242 11965 4.202080 GCATGTATGTAACCCGACAGAGTA 60.202 45.833 0.00 0.00 31.51 2.59
6303 12026 0.543749 CCAGAGGGTCATCAGGGTTC 59.456 60.000 0.00 0.00 0.00 3.62
6315 12038 1.112315 CGATCTCAGGGACCAGAGGG 61.112 65.000 10.39 0.00 41.29 4.30
6324 12047 1.227764 CATGTGGGCGATCTCAGGG 60.228 63.158 0.00 0.00 0.00 4.45
6482 12205 1.485124 TGACAGACAGGTGACACACT 58.515 50.000 8.08 0.00 34.40 3.55
6489 12212 0.947244 GCCAGTTTGACAGACAGGTG 59.053 55.000 8.99 0.00 0.00 4.00
6490 12213 0.546122 TGCCAGTTTGACAGACAGGT 59.454 50.000 8.99 0.00 0.00 4.00
6491 12214 0.947244 GTGCCAGTTTGACAGACAGG 59.053 55.000 3.41 3.41 0.00 4.00
6492 12215 1.869767 GAGTGCCAGTTTGACAGACAG 59.130 52.381 0.00 0.00 0.00 3.51
6601 12324 2.490115 CGGGTAAGCAATTTAAGTGGCA 59.510 45.455 0.00 0.00 0.00 4.92
6602 12325 2.490509 ACGGGTAAGCAATTTAAGTGGC 59.509 45.455 0.00 0.00 0.00 5.01
6604 12327 3.917985 GCAACGGGTAAGCAATTTAAGTG 59.082 43.478 0.00 0.00 0.00 3.16
6605 12328 3.570550 TGCAACGGGTAAGCAATTTAAGT 59.429 39.130 0.00 0.00 34.97 2.24
6606 12329 4.167554 TGCAACGGGTAAGCAATTTAAG 57.832 40.909 0.00 0.00 34.97 1.85
6613 12336 3.460857 AAAAATTGCAACGGGTAAGCA 57.539 38.095 0.00 0.00 36.32 3.91
6630 12353 6.018669 CGGGTAAGCAATTTAAAGCACAAAAA 60.019 34.615 2.68 0.00 0.00 1.94
6631 12354 5.463724 CGGGTAAGCAATTTAAAGCACAAAA 59.536 36.000 2.68 0.00 0.00 2.44
6632 12355 4.985409 CGGGTAAGCAATTTAAAGCACAAA 59.015 37.500 2.68 0.00 0.00 2.83
6633 12356 4.038162 ACGGGTAAGCAATTTAAAGCACAA 59.962 37.500 2.68 0.00 0.00 3.33
6708 12431 1.890979 CCCCTGCGCATGATCAGAC 60.891 63.158 12.24 0.00 32.26 3.51
6709 12432 1.913951 AACCCCTGCGCATGATCAGA 61.914 55.000 12.24 0.00 32.26 3.27
6710 12433 1.442526 GAACCCCTGCGCATGATCAG 61.443 60.000 12.24 0.00 0.00 2.90
6711 12434 1.451927 GAACCCCTGCGCATGATCA 60.452 57.895 12.24 0.00 0.00 2.92
6712 12435 0.106708 TAGAACCCCTGCGCATGATC 59.893 55.000 12.24 7.21 0.00 2.92
6731 12458 1.686355 TTGTTTTGACGCCACCTGAT 58.314 45.000 0.00 0.00 0.00 2.90
6765 12492 6.501781 ACTGGCGTTATCATTAGTACAGTAC 58.498 40.000 2.05 2.05 35.17 2.73
6767 12494 5.593679 ACTGGCGTTATCATTAGTACAGT 57.406 39.130 0.00 0.00 32.37 3.55
6769 12496 5.526115 GCTACTGGCGTTATCATTAGTACA 58.474 41.667 0.00 0.00 0.00 2.90
6820 12709 2.866065 GCAAATTTGAAGTCCCAACCCG 60.866 50.000 22.31 0.00 0.00 5.28
6856 12745 4.017808 TCCTGACAACTAGCCTCTTACTC 58.982 47.826 0.00 0.00 0.00 2.59
6928 12817 1.153369 ACACTGAACACTGCGTGCT 60.153 52.632 8.31 0.00 36.98 4.40
6932 12821 0.385098 CATGCACACTGAACACTGCG 60.385 55.000 0.00 0.00 31.96 5.18
6938 12827 1.002468 AGAAACGCATGCACACTGAAC 60.002 47.619 19.57 0.36 0.00 3.18
6941 12830 0.587768 TGAGAAACGCATGCACACTG 59.412 50.000 19.57 2.94 0.00 3.66
6942 12831 0.588252 GTGAGAAACGCATGCACACT 59.412 50.000 19.57 10.71 0.00 3.55
6943 12832 0.385974 GGTGAGAAACGCATGCACAC 60.386 55.000 19.57 15.38 0.00 3.82
6957 12846 3.314541 AGTTAGTTTAGGTGCGGTGAG 57.685 47.619 0.00 0.00 0.00 3.51
6960 12849 4.756642 GGTTAAAGTTAGTTTAGGTGCGGT 59.243 41.667 0.00 0.00 32.07 5.68
6962 12851 5.927954 TGGTTAAAGTTAGTTTAGGTGCG 57.072 39.130 0.00 0.00 32.07 5.34
6963 12852 7.933396 TCTTTGGTTAAAGTTAGTTTAGGTGC 58.067 34.615 0.00 0.00 43.04 5.01
6964 12853 8.565416 CCTCTTTGGTTAAAGTTAGTTTAGGTG 58.435 37.037 0.00 0.00 43.04 4.00
6965 12854 8.687292 CCTCTTTGGTTAAAGTTAGTTTAGGT 57.313 34.615 0.00 0.00 43.04 3.08
7002 12891 6.727394 AGCATTTATTGTCAACCTAACCCTA 58.273 36.000 0.00 0.00 0.00 3.53
7033 12922 4.953579 GGGTTCCAAGTAGCCAAATGATTA 59.046 41.667 0.00 0.00 33.39 1.75
7050 12939 1.564348 TCCAGCAGGAAATAGGGTTCC 59.436 52.381 0.00 0.00 46.48 3.62
7067 12956 1.447838 GCTCGCTCCGTCAAATCCA 60.448 57.895 0.00 0.00 0.00 3.41
7140 13029 1.376609 GAATTCGATTGGCGGGCTGT 61.377 55.000 2.38 0.00 41.33 4.40
7152 13041 1.447838 GCAGGGACAGCGAATTCGA 60.448 57.895 31.01 0.00 43.02 3.71
7253 13142 1.918800 CCAACCCCCTCGTCTTCCT 60.919 63.158 0.00 0.00 0.00 3.36
7294 13184 4.462280 CCGTCTGCCCCCGGTAAC 62.462 72.222 0.00 0.00 39.38 2.50
7323 13213 2.125552 CGTGAAGGCGCATCTCCA 60.126 61.111 10.83 0.00 0.00 3.86
7348 13238 0.633921 CTCTTCCTCCCTCCCTCTCA 59.366 60.000 0.00 0.00 0.00 3.27
7363 13257 1.403679 CTCGAAGCATCTCGTCCTCTT 59.596 52.381 3.30 0.00 39.84 2.85
7375 13269 1.535444 TCCCCACTTCCTCGAAGCA 60.535 57.895 1.31 0.00 42.79 3.91
7397 13291 2.989840 ACATTTTTCTCTCGCTCAGTCG 59.010 45.455 0.00 0.00 0.00 4.18
7398 13292 3.743396 ACACATTTTTCTCTCGCTCAGTC 59.257 43.478 0.00 0.00 0.00 3.51
7400 13294 3.993081 AGACACATTTTTCTCTCGCTCAG 59.007 43.478 0.00 0.00 0.00 3.35
7401 13295 3.995199 AGACACATTTTTCTCTCGCTCA 58.005 40.909 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.