Multiple sequence alignment - TraesCS3A01G238000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G238000 chr3A 100.000 6205 0 0 1 6205 444726399 444720195 0.000000e+00 11459
1 TraesCS3A01G238000 chr3D 94.911 4736 203 13 856 5580 329697412 329692704 0.000000e+00 7376
2 TraesCS3A01G238000 chr3D 85.552 616 41 20 1 591 329698572 329697980 8.900000e-168 601
3 TraesCS3A01G238000 chr3D 89.300 243 10 4 577 819 329698026 329697800 2.190000e-74 291
4 TraesCS3A01G238000 chr3B 94.988 4709 199 13 856 5554 427320773 427316092 0.000000e+00 7354
5 TraesCS3A01G238000 chr3B 85.366 656 42 21 1 625 427322014 427321382 1.140000e-176 630
6 TraesCS3A01G238000 chr3B 92.086 278 12 3 547 819 427321433 427321161 3.510000e-102 383
7 TraesCS3A01G238000 chr2D 95.276 635 27 3 5573 6205 607135036 607135669 0.000000e+00 1003
8 TraesCS3A01G238000 chr2D 95.513 624 28 0 5582 6205 36579669 36579046 0.000000e+00 998
9 TraesCS3A01G238000 chr6D 95.455 616 24 2 5590 6204 430527469 430528081 0.000000e+00 979
10 TraesCS3A01G238000 chr7A 94.246 643 31 5 5564 6205 53730941 53731578 0.000000e+00 977
11 TraesCS3A01G238000 chr4D 94.888 626 31 1 5581 6205 478667315 478666690 0.000000e+00 977
12 TraesCS3A01G238000 chr4D 94.586 628 31 3 5579 6205 170690871 170690246 0.000000e+00 968
13 TraesCS3A01G238000 chr1D 94.577 627 33 1 5580 6205 22880949 22881575 0.000000e+00 968
14 TraesCS3A01G238000 chr1D 94.453 631 32 3 5576 6205 474020051 474020679 0.000000e+00 968
15 TraesCS3A01G238000 chr2B 94.444 630 31 4 5577 6205 88915755 88915129 0.000000e+00 966


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G238000 chr3A 444720195 444726399 6204 True 11459 11459 100.000000 1 6205 1 chr3A.!!$R1 6204
1 TraesCS3A01G238000 chr3D 329692704 329698572 5868 True 2756 7376 89.921000 1 5580 3 chr3D.!!$R1 5579
2 TraesCS3A01G238000 chr3B 427316092 427322014 5922 True 2789 7354 90.813333 1 5554 3 chr3B.!!$R1 5553
3 TraesCS3A01G238000 chr2D 607135036 607135669 633 False 1003 1003 95.276000 5573 6205 1 chr2D.!!$F1 632
4 TraesCS3A01G238000 chr2D 36579046 36579669 623 True 998 998 95.513000 5582 6205 1 chr2D.!!$R1 623
5 TraesCS3A01G238000 chr6D 430527469 430528081 612 False 979 979 95.455000 5590 6204 1 chr6D.!!$F1 614
6 TraesCS3A01G238000 chr7A 53730941 53731578 637 False 977 977 94.246000 5564 6205 1 chr7A.!!$F1 641
7 TraesCS3A01G238000 chr4D 478666690 478667315 625 True 977 977 94.888000 5581 6205 1 chr4D.!!$R2 624
8 TraesCS3A01G238000 chr4D 170690246 170690871 625 True 968 968 94.586000 5579 6205 1 chr4D.!!$R1 626
9 TraesCS3A01G238000 chr1D 22880949 22881575 626 False 968 968 94.577000 5580 6205 1 chr1D.!!$F1 625
10 TraesCS3A01G238000 chr1D 474020051 474020679 628 False 968 968 94.453000 5576 6205 1 chr1D.!!$F2 629
11 TraesCS3A01G238000 chr2B 88915129 88915755 626 True 966 966 94.444000 5577 6205 1 chr2B.!!$R1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 942 0.038159 AGTGAAGTGCGCAGTAGGTC 60.038 55.0 19.93 13.23 0.00 3.85 F
969 1429 0.319555 TGTCGTTCAGAAGCGAAGGG 60.320 55.0 8.74 0.00 38.91 3.95 F
2018 2484 0.895559 CCCAACTTGAGAAGGCCCAC 60.896 60.0 0.00 0.00 0.00 4.61 F
3206 3672 0.106708 TTTCGGAGTTGCAGCAGTCT 59.893 50.0 2.55 0.00 0.00 3.24 F
4362 4828 0.325016 TGATCTCCAGCAGAGCCTCA 60.325 55.0 0.00 2.83 42.90 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2706 3172 0.034670 GCTCTGAGGCCTTCAATGGT 60.035 55.000 6.77 0.00 34.81 3.55 R
2812 3278 0.318762 GCTCTGGAGGTTCTTGACGT 59.681 55.000 0.00 0.00 0.00 4.34 R
3498 3964 1.153489 CGGTCAGGGCAGAGATGTG 60.153 63.158 0.00 0.00 0.00 3.21 R
4408 4874 0.108585 AGATGCCTTTGTGGACACGT 59.891 50.000 0.00 0.00 38.35 4.49 R
5837 6306 1.535444 ATGTGAGTGGGTCGGACCA 60.535 57.895 27.32 11.77 41.02 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.572642 TGAACAAGAGGCGGGAGATATA 58.427 45.455 0.00 0.00 0.00 0.86
40 41 4.415596 AGATATAGAGTGAAGGAGGCAGG 58.584 47.826 0.00 0.00 0.00 4.85
42 43 1.853963 TAGAGTGAAGGAGGCAGGAC 58.146 55.000 0.00 0.00 0.00 3.85
53 54 2.678336 GGAGGCAGGACTAATTTCGTTG 59.322 50.000 0.00 0.00 0.00 4.10
72 73 2.695359 TGGGTACGTTTCTTGATCTGC 58.305 47.619 0.00 0.00 0.00 4.26
79 80 3.006323 ACGTTTCTTGATCTGCTCACTCT 59.994 43.478 0.00 0.00 32.17 3.24
80 81 3.611986 CGTTTCTTGATCTGCTCACTCTC 59.388 47.826 0.00 0.00 32.17 3.20
81 82 4.617995 CGTTTCTTGATCTGCTCACTCTCT 60.618 45.833 0.00 0.00 32.17 3.10
82 83 4.453177 TTCTTGATCTGCTCACTCTCTG 57.547 45.455 0.00 0.00 32.17 3.35
83 84 3.429492 TCTTGATCTGCTCACTCTCTGT 58.571 45.455 0.00 0.00 32.17 3.41
84 85 3.831333 TCTTGATCTGCTCACTCTCTGTT 59.169 43.478 0.00 0.00 32.17 3.16
85 86 3.589495 TGATCTGCTCACTCTCTGTTG 57.411 47.619 0.00 0.00 0.00 3.33
86 87 2.896044 TGATCTGCTCACTCTCTGTTGT 59.104 45.455 0.00 0.00 0.00 3.32
87 88 4.082125 TGATCTGCTCACTCTCTGTTGTA 58.918 43.478 0.00 0.00 0.00 2.41
88 89 3.924918 TCTGCTCACTCTCTGTTGTAC 57.075 47.619 0.00 0.00 0.00 2.90
89 90 3.222603 TCTGCTCACTCTCTGTTGTACA 58.777 45.455 0.00 0.00 0.00 2.90
90 91 9.599875 TTGATCTGCTCACTCTCTGTTGTACAG 62.600 44.444 0.00 0.40 39.55 2.74
91 92 2.959030 TGCTCACTCTCTGTTGTACAGT 59.041 45.455 6.71 0.00 46.03 3.55
92 93 3.004839 TGCTCACTCTCTGTTGTACAGTC 59.995 47.826 6.71 0.00 46.03 3.51
93 94 3.254657 GCTCACTCTCTGTTGTACAGTCT 59.745 47.826 6.71 0.00 46.03 3.24
94 95 4.456222 GCTCACTCTCTGTTGTACAGTCTA 59.544 45.833 6.71 0.00 46.03 2.59
95 96 5.391523 GCTCACTCTCTGTTGTACAGTCTAG 60.392 48.000 6.71 5.78 46.03 2.43
96 97 5.866207 TCACTCTCTGTTGTACAGTCTAGA 58.134 41.667 6.71 0.00 46.03 2.43
112 113 1.583495 TAGATAGATGCGGGTCGGCG 61.583 60.000 0.00 0.00 35.06 6.46
123 124 1.153429 GGTCGGCGGCTCTTGTTAT 60.153 57.895 12.73 0.00 0.00 1.89
133 134 3.562973 CGGCTCTTGTTATCGGACTAGTA 59.437 47.826 0.00 0.00 0.00 1.82
138 139 5.374921 TCTTGTTATCGGACTAGTAGGGAG 58.625 45.833 0.00 0.00 0.00 4.30
139 140 5.131642 TCTTGTTATCGGACTAGTAGGGAGA 59.868 44.000 0.00 0.00 0.00 3.71
140 141 5.378230 TGTTATCGGACTAGTAGGGAGAA 57.622 43.478 0.00 0.00 0.00 2.87
141 142 5.374921 TGTTATCGGACTAGTAGGGAGAAG 58.625 45.833 0.00 0.00 0.00 2.85
142 143 5.104193 TGTTATCGGACTAGTAGGGAGAAGT 60.104 44.000 0.00 0.00 0.00 3.01
143 144 4.523168 ATCGGACTAGTAGGGAGAAGTT 57.477 45.455 0.00 0.00 0.00 2.66
144 145 4.313020 TCGGACTAGTAGGGAGAAGTTT 57.687 45.455 0.00 0.00 0.00 2.66
145 146 4.268359 TCGGACTAGTAGGGAGAAGTTTC 58.732 47.826 0.00 0.00 0.00 2.78
146 147 4.018597 TCGGACTAGTAGGGAGAAGTTTCT 60.019 45.833 0.00 0.00 41.00 2.52
147 148 4.096682 CGGACTAGTAGGGAGAAGTTTCTG 59.903 50.000 0.00 0.00 37.73 3.02
148 149 5.018149 GGACTAGTAGGGAGAAGTTTCTGT 58.982 45.833 0.00 0.00 37.73 3.41
155 156 6.726764 AGTAGGGAGAAGTTTCTGTTCTGTAT 59.273 38.462 0.00 0.00 37.73 2.29
168 169 5.185056 TCTGTTCTGTATGAGTTGAATCGGA 59.815 40.000 0.00 0.00 0.00 4.55
194 195 5.466127 AATGGGTGTATATGACTTTGGGT 57.534 39.130 0.00 0.00 0.00 4.51
195 196 6.584471 AATGGGTGTATATGACTTTGGGTA 57.416 37.500 0.00 0.00 0.00 3.69
197 198 6.584471 TGGGTGTATATGACTTTGGGTATT 57.416 37.500 0.00 0.00 0.00 1.89
199 200 6.069323 TGGGTGTATATGACTTTGGGTATTGT 60.069 38.462 0.00 0.00 0.00 2.71
202 203 7.201785 GGTGTATATGACTTTGGGTATTGTTGG 60.202 40.741 0.00 0.00 0.00 3.77
203 204 7.554835 GTGTATATGACTTTGGGTATTGTTGGA 59.445 37.037 0.00 0.00 0.00 3.53
241 245 8.621286 CATCCTTATGATGTAGGTTAACAAACC 58.379 37.037 8.10 0.00 44.91 3.27
254 258 6.684686 GGTTAACAAACCTGGGAATAGTTTC 58.315 40.000 8.10 0.00 39.71 2.78
335 340 5.385198 TGCTTATGCTTTATTAGAAGGGGG 58.615 41.667 1.96 0.00 40.48 5.40
358 363 2.093447 AGGTAGAACAATCAGGCGGAAG 60.093 50.000 0.00 0.00 0.00 3.46
375 399 2.485814 GGAAGAGTGCGCAGAGAAAATT 59.514 45.455 12.22 0.00 0.00 1.82
429 453 2.161012 CAGTAAACCTCTAGCGTCACGA 59.839 50.000 0.00 0.00 0.00 4.35
446 470 2.027625 GACTCCAGCAACCGAACCG 61.028 63.158 0.00 0.00 0.00 4.44
534 558 4.320788 CCAATCCAAGCTGTTTCTCACTTC 60.321 45.833 0.00 0.00 0.00 3.01
562 656 9.628500 GGACTAAATCACTAAACCCATAGATTT 57.372 33.333 0.00 0.00 38.68 2.17
617 711 2.965572 TTCCCGATACACTAAACCCG 57.034 50.000 0.00 0.00 0.00 5.28
640 734 6.317642 CCGTATATTCAAACCATGGACAAAGA 59.682 38.462 21.47 5.90 0.00 2.52
667 772 4.561735 GCAAGTAGCAGAGTAGTCTAGG 57.438 50.000 0.00 0.00 44.79 3.02
668 773 4.200874 GCAAGTAGCAGAGTAGTCTAGGA 58.799 47.826 0.00 0.00 44.79 2.94
669 774 4.641094 GCAAGTAGCAGAGTAGTCTAGGAA 59.359 45.833 0.00 0.00 44.79 3.36
670 775 5.125739 GCAAGTAGCAGAGTAGTCTAGGAAA 59.874 44.000 0.00 0.00 44.79 3.13
671 776 6.350277 GCAAGTAGCAGAGTAGTCTAGGAAAA 60.350 42.308 0.00 0.00 44.79 2.29
672 777 7.631811 GCAAGTAGCAGAGTAGTCTAGGAAAAT 60.632 40.741 0.00 0.00 44.79 1.82
673 778 7.341445 AGTAGCAGAGTAGTCTAGGAAAATG 57.659 40.000 0.00 0.00 0.00 2.32
674 779 7.120051 AGTAGCAGAGTAGTCTAGGAAAATGA 58.880 38.462 0.00 0.00 0.00 2.57
675 780 7.782644 AGTAGCAGAGTAGTCTAGGAAAATGAT 59.217 37.037 0.00 0.00 0.00 2.45
676 781 9.069082 GTAGCAGAGTAGTCTAGGAAAATGATA 57.931 37.037 0.00 0.00 0.00 2.15
677 782 8.177119 AGCAGAGTAGTCTAGGAAAATGATAG 57.823 38.462 0.00 0.00 0.00 2.08
719 824 2.169832 AGGTGTTCTTGGATGTGTCG 57.830 50.000 0.00 0.00 0.00 4.35
749 854 3.055591 CGAGATGCTATACTGTGCAAGG 58.944 50.000 0.00 0.00 42.74 3.61
756 861 2.338577 ATACTGTGCAAGGATGAGGC 57.661 50.000 0.00 0.00 0.00 4.70
758 863 0.322277 ACTGTGCAAGGATGAGGCTG 60.322 55.000 0.00 0.00 0.00 4.85
796 901 5.435686 TCTTAGTTTGTGCCCTATGTCAT 57.564 39.130 0.00 0.00 0.00 3.06
797 902 5.185454 TCTTAGTTTGTGCCCTATGTCATG 58.815 41.667 0.00 0.00 0.00 3.07
798 903 3.439857 AGTTTGTGCCCTATGTCATGT 57.560 42.857 0.00 0.00 0.00 3.21
799 904 3.347216 AGTTTGTGCCCTATGTCATGTC 58.653 45.455 0.00 0.00 0.00 3.06
800 905 3.081061 GTTTGTGCCCTATGTCATGTCA 58.919 45.455 0.00 0.00 0.00 3.58
819 924 7.493645 TCATGTCACTACTGCTTAATGAATGAG 59.506 37.037 0.00 0.00 0.00 2.90
821 926 6.591448 TGTCACTACTGCTTAATGAATGAGTG 59.409 38.462 0.00 0.00 34.46 3.51
823 928 7.331934 GTCACTACTGCTTAATGAATGAGTGAA 59.668 37.037 0.00 0.00 41.59 3.18
824 929 7.547019 TCACTACTGCTTAATGAATGAGTGAAG 59.453 37.037 0.00 0.00 38.20 3.02
825 930 7.332926 CACTACTGCTTAATGAATGAGTGAAGT 59.667 37.037 0.00 0.00 34.98 3.01
826 931 6.492007 ACTGCTTAATGAATGAGTGAAGTG 57.508 37.500 0.00 0.00 0.00 3.16
827 932 5.106396 ACTGCTTAATGAATGAGTGAAGTGC 60.106 40.000 0.00 0.00 0.00 4.40
828 933 4.142838 TGCTTAATGAATGAGTGAAGTGCG 60.143 41.667 0.00 0.00 0.00 5.34
829 934 2.907910 AATGAATGAGTGAAGTGCGC 57.092 45.000 0.00 0.00 0.00 6.09
830 935 1.812235 ATGAATGAGTGAAGTGCGCA 58.188 45.000 5.66 5.66 0.00 6.09
831 936 1.150827 TGAATGAGTGAAGTGCGCAG 58.849 50.000 12.22 0.00 0.00 5.18
832 937 1.151668 GAATGAGTGAAGTGCGCAGT 58.848 50.000 12.22 12.72 0.00 4.40
834 939 2.001812 ATGAGTGAAGTGCGCAGTAG 57.998 50.000 19.93 0.00 0.00 2.57
835 940 0.038251 TGAGTGAAGTGCGCAGTAGG 60.038 55.000 19.93 0.00 0.00 3.18
837 942 0.038159 AGTGAAGTGCGCAGTAGGTC 60.038 55.000 19.93 13.23 0.00 3.85
838 943 1.014564 GTGAAGTGCGCAGTAGGTCC 61.015 60.000 19.93 0.02 0.00 4.46
842 947 1.185618 AGTGCGCAGTAGGTCCTTGA 61.186 55.000 17.99 0.00 0.00 3.02
843 948 0.320421 GTGCGCAGTAGGTCCTTGAA 60.320 55.000 12.22 0.00 0.00 2.69
845 950 1.019805 GCGCAGTAGGTCCTTGAACC 61.020 60.000 0.30 0.00 39.80 3.62
853 958 2.861147 GGTCCTTGAACCTACTGCTT 57.139 50.000 0.00 0.00 36.32 3.91
856 961 4.844884 GGTCCTTGAACCTACTGCTTAAT 58.155 43.478 0.00 0.00 36.32 1.40
857 962 5.254115 GGTCCTTGAACCTACTGCTTAATT 58.746 41.667 0.00 0.00 36.32 1.40
858 963 6.412214 GGTCCTTGAACCTACTGCTTAATTA 58.588 40.000 0.00 0.00 36.32 1.40
859 964 6.882678 GGTCCTTGAACCTACTGCTTAATTAA 59.117 38.462 0.00 0.00 36.32 1.40
861 966 8.235226 GTCCTTGAACCTACTGCTTAATTAAAC 58.765 37.037 0.00 0.00 0.00 2.01
862 967 7.118680 TCCTTGAACCTACTGCTTAATTAAACG 59.881 37.037 0.00 0.00 0.00 3.60
863 968 6.730960 TGAACCTACTGCTTAATTAAACGG 57.269 37.500 5.99 5.99 0.00 4.44
864 969 6.232692 TGAACCTACTGCTTAATTAAACGGT 58.767 36.000 15.49 15.49 0.00 4.83
865 970 6.711645 TGAACCTACTGCTTAATTAAACGGTT 59.288 34.615 16.19 11.65 34.07 4.44
866 971 6.732531 ACCTACTGCTTAATTAAACGGTTC 57.267 37.500 16.19 0.00 0.00 3.62
867 972 5.645067 ACCTACTGCTTAATTAAACGGTTCC 59.355 40.000 16.19 0.00 0.00 3.62
870 975 5.557866 ACTGCTTAATTAAACGGTTCCTCT 58.442 37.500 7.17 0.00 0.00 3.69
871 976 6.002082 ACTGCTTAATTAAACGGTTCCTCTT 58.998 36.000 7.17 0.00 0.00 2.85
883 1339 3.315191 CGGTTCCTCTTGTGACAATTGTT 59.685 43.478 13.36 0.00 0.00 2.83
884 1340 4.554723 CGGTTCCTCTTGTGACAATTGTTC 60.555 45.833 13.36 9.81 0.00 3.18
888 1344 4.103153 TCCTCTTGTGACAATTGTTCTCCT 59.897 41.667 13.36 0.00 0.00 3.69
900 1356 3.407424 TGTTCTCCTGGATGAGTTGTG 57.593 47.619 0.00 0.00 33.93 3.33
910 1366 6.947733 TCCTGGATGAGTTGTGAATTAATTGT 59.052 34.615 5.17 0.00 0.00 2.71
911 1367 7.451255 TCCTGGATGAGTTGTGAATTAATTGTT 59.549 33.333 5.17 0.00 0.00 2.83
937 1393 3.398954 TTTCGTTCTTGCACAGTTCAC 57.601 42.857 0.00 0.00 0.00 3.18
939 1395 1.134521 TCGTTCTTGCACAGTTCACCT 60.135 47.619 0.00 0.00 0.00 4.00
940 1396 1.670811 CGTTCTTGCACAGTTCACCTT 59.329 47.619 0.00 0.00 0.00 3.50
942 1398 1.967319 TCTTGCACAGTTCACCTTCC 58.033 50.000 0.00 0.00 0.00 3.46
969 1429 0.319555 TGTCGTTCAGAAGCGAAGGG 60.320 55.000 8.74 0.00 38.91 3.95
986 1446 3.414759 AGGGTGTGGATATAGTGACCA 57.585 47.619 0.00 0.00 0.00 4.02
1033 1493 9.936759 AGAAACACAAAAATAGAAAGTCCAAAA 57.063 25.926 0.00 0.00 0.00 2.44
1102 1568 7.062906 TCAATTATCATGCATGTTTTTGTGC 57.937 32.000 25.43 0.00 41.61 4.57
1135 1601 2.755103 GAGGGACCACCAATCACATTTC 59.245 50.000 0.00 0.00 43.89 2.17
1144 1610 3.696051 ACCAATCACATTTCCTCCATTCG 59.304 43.478 0.00 0.00 0.00 3.34
1155 1621 8.190784 ACATTTCCTCCATTCGTCAAATTATTC 58.809 33.333 0.00 0.00 0.00 1.75
1472 1938 8.173775 CACTGCAAAGATCTAATCAGTAAACTG 58.826 37.037 17.73 3.64 45.08 3.16
1622 2088 2.787994 CTTGCTGGAGAACATCAAGGT 58.212 47.619 3.69 0.00 45.18 3.50
1623 2089 2.189594 TGCTGGAGAACATCAAGGTG 57.810 50.000 0.00 0.00 28.39 4.00
1624 2090 1.699083 TGCTGGAGAACATCAAGGTGA 59.301 47.619 0.00 0.00 28.39 4.02
1625 2091 2.106338 TGCTGGAGAACATCAAGGTGAA 59.894 45.455 0.00 0.00 28.39 3.18
1626 2092 2.746362 GCTGGAGAACATCAAGGTGAAG 59.254 50.000 0.00 0.00 28.39 3.02
1627 2093 3.557898 GCTGGAGAACATCAAGGTGAAGA 60.558 47.826 0.00 0.00 28.39 2.87
1628 2094 4.252073 CTGGAGAACATCAAGGTGAAGAG 58.748 47.826 0.00 0.00 0.00 2.85
1629 2095 3.006247 GGAGAACATCAAGGTGAAGAGC 58.994 50.000 0.00 0.00 0.00 4.09
1630 2096 3.557898 GGAGAACATCAAGGTGAAGAGCA 60.558 47.826 0.00 0.00 0.00 4.26
1631 2097 4.067896 GAGAACATCAAGGTGAAGAGCAA 58.932 43.478 0.00 0.00 0.00 3.91
1636 2102 4.757149 ACATCAAGGTGAAGAGCAAAGTAC 59.243 41.667 0.00 0.00 0.00 2.73
1645 2111 1.079503 GAGCAAAGTACGGAAGCAGG 58.920 55.000 5.66 0.00 0.00 4.85
1721 2187 8.743085 ATCTGATGAAGCTATTAGAAAAAGCA 57.257 30.769 0.00 0.00 38.75 3.91
1739 2205 5.990120 AAGCAATAATGGACAAAGAAGCT 57.010 34.783 0.00 0.00 0.00 3.74
1775 2241 4.818534 TGCAAACTTGTCATCAGAGAAC 57.181 40.909 0.00 0.00 0.00 3.01
1812 2278 1.202806 TGGTTGAAGGTGCAGAGAAGG 60.203 52.381 0.00 0.00 0.00 3.46
1861 2327 5.279255 ACAGACATGGAGAATGAGATGAG 57.721 43.478 0.00 0.00 38.72 2.90
1864 2330 5.012251 CAGACATGGAGAATGAGATGAGGAT 59.988 44.000 0.00 0.00 38.72 3.24
2000 2466 5.334724 AGAAATGCAATTCCTTGTCATCC 57.665 39.130 10.92 0.00 33.67 3.51
2018 2484 0.895559 CCCAACTTGAGAAGGCCCAC 60.896 60.000 0.00 0.00 0.00 4.61
2055 2521 4.319177 AGTGCAGACCTTGTTATCAGAAC 58.681 43.478 0.00 0.00 0.00 3.01
2079 2545 6.779539 ACTCCAAAAATCCAAGAATGAGAACT 59.220 34.615 0.00 0.00 0.00 3.01
2138 2604 7.861372 GCAAATGAGAAGAATGTGGATATCAAG 59.139 37.037 4.83 0.00 0.00 3.02
2152 2618 6.148811 GTGGATATCAAGTTTTCCGAACTGAA 59.851 38.462 4.83 0.00 0.00 3.02
2201 2667 5.640189 AAAATGACTCCTTGATTGCAGAG 57.360 39.130 0.00 0.00 0.00 3.35
2213 2679 6.348050 CCTTGATTGCAGAGAACAGTTTACTC 60.348 42.308 0.00 0.00 0.00 2.59
2230 2696 2.288666 ACTCGAAAGCAAGCTTCAACA 58.711 42.857 7.88 0.00 34.84 3.33
2257 2723 3.515901 GGGGTGGAGATAGATGGTATGAC 59.484 52.174 0.00 0.00 0.00 3.06
2467 2933 5.998363 AGCTACTGAAAGAAAAGAATTCCGT 59.002 36.000 0.65 0.00 37.43 4.69
2534 3000 3.772932 ACACGAGTTCGAACAACAACTA 58.227 40.909 28.78 0.00 43.02 2.24
2546 3012 7.254852 TCGAACAACAACTAAAGCAAATTTCT 58.745 30.769 0.00 0.00 32.01 2.52
2591 3057 2.393764 CTGGCGTTGGTGAATTCAAAC 58.606 47.619 10.35 11.02 0.00 2.93
2706 3172 6.039717 CCAACAAATTTCAAGTCTTCAGGAGA 59.960 38.462 0.00 0.00 0.00 3.71
2770 3236 3.220940 AGGTTATAGTACACGAGGAGGC 58.779 50.000 0.00 0.00 0.00 4.70
2775 3241 0.963962 AGTACACGAGGAGGCGAAAA 59.036 50.000 0.00 0.00 34.83 2.29
2812 3278 3.632604 CAGTTAGATCAGTCGGAGGCTTA 59.367 47.826 0.00 0.00 45.33 3.09
2846 3312 5.278266 CCTCCAGAGCGAGATAGAACTAAAG 60.278 48.000 0.00 0.00 30.97 1.85
2891 3357 3.439476 AGCAAGCTAATGAAGAACTGCAG 59.561 43.478 13.48 13.48 31.50 4.41
2911 3377 4.142293 GCAGGAGAAAAATTCTAGCTTGGG 60.142 45.833 0.00 0.00 40.87 4.12
2912 3378 5.012893 CAGGAGAAAAATTCTAGCTTGGGT 58.987 41.667 0.00 0.00 40.87 4.51
2935 3401 2.744741 GGCAGCTGGAAGAAGTTAAGAC 59.255 50.000 17.12 0.00 34.07 3.01
2960 3426 6.832520 GATCTACAGGCTGAGATCATTCTA 57.167 41.667 30.69 11.60 45.01 2.10
2983 3449 9.077885 TCTATTACAAGGAGAAAAGCAACAAAT 57.922 29.630 0.00 0.00 0.00 2.32
3023 3489 4.872691 CAGTCAAACACTTCAGTCAAGACT 59.127 41.667 0.00 0.00 35.94 3.24
3178 3644 7.789273 TTATAGTACTCCAAGACGAGAAGAG 57.211 40.000 0.00 0.00 33.83 2.85
3206 3672 0.106708 TTTCGGAGTTGCAGCAGTCT 59.893 50.000 2.55 0.00 0.00 3.24
3238 3704 7.551585 TCCATCAAGAATCTAAGAACTGAGTC 58.448 38.462 0.00 0.00 0.00 3.36
3277 3743 5.587844 AGCAAATTTCGATCTTGCATCTAGT 59.412 36.000 21.51 4.54 46.26 2.57
3416 3882 3.324846 AGTTACACCAGTCTCATGCTTCA 59.675 43.478 0.00 0.00 0.00 3.02
3489 3955 4.906065 TTACAGCAAGCCAATGATGATC 57.094 40.909 6.96 0.00 38.99 2.92
3498 3964 4.387598 AGCCAATGATGATCTACAGAAGC 58.612 43.478 0.00 0.00 0.00 3.86
3508 3974 3.516981 TCTACAGAAGCACATCTCTGC 57.483 47.619 0.00 0.00 37.44 4.26
3605 4071 4.401837 ACGGTTTTAACCCAACTAAAGCAA 59.598 37.500 6.09 0.00 46.53 3.91
3635 4101 8.341892 AGTTTTCTATCAAGAACCTTGAATCC 57.658 34.615 12.64 0.00 41.48 3.01
3656 4122 5.141182 TCCGAGATAGCTCAGTTAAAGGAT 58.859 41.667 8.99 0.00 41.36 3.24
3755 4221 6.273825 GGATATTCTAGCACTTCGTGAAGAA 58.726 40.000 16.10 8.52 40.79 2.52
3789 4255 5.635417 TCTGTCAGAGTTACATCAGTCTG 57.365 43.478 0.00 0.00 43.24 3.51
3815 4281 4.502259 GCTTCTGTGAGGAACTTTGAGAGA 60.502 45.833 0.00 0.00 41.55 3.10
3889 4355 5.522456 TGAATCAGAACAGAACAAATGTGC 58.478 37.500 0.00 0.00 0.00 4.57
3969 4435 6.481644 GGCACAAGAAGAGAAGGATACATTAG 59.518 42.308 0.00 0.00 41.41 1.73
4060 4526 4.907879 AACTTTCAGTTCAGCTGGAAAG 57.092 40.909 27.61 27.61 41.85 2.62
4162 4628 1.065491 TGAGGCGGCATGTCAAGTTAT 60.065 47.619 13.08 0.00 0.00 1.89
4202 4668 8.908786 ATGCGAAAGATTTGGAGAAGATAATA 57.091 30.769 0.00 0.00 0.00 0.98
4238 4704 2.121506 AAGGCCAAGGTGGAGGGA 60.122 61.111 5.01 0.00 40.96 4.20
4280 4746 9.687717 GTTAAAATATGCATGGAAAATTTGTCG 57.312 29.630 10.16 0.00 0.00 4.35
4292 4758 6.071447 TGGAAAATTTGTCGTCCATGAATGAT 60.071 34.615 5.40 0.00 35.22 2.45
4334 4800 5.645497 ACAGAAAGTTTCAGATCATGCTACC 59.355 40.000 17.65 0.00 0.00 3.18
4346 4812 3.689347 TCATGCTACCAAACTTGCTGAT 58.311 40.909 0.00 0.00 0.00 2.90
4362 4828 0.325016 TGATCTCCAGCAGAGCCTCA 60.325 55.000 0.00 2.83 42.90 3.86
4364 4830 1.209019 GATCTCCAGCAGAGCCTCAAA 59.791 52.381 0.00 0.00 42.90 2.69
4374 4840 3.388308 CAGAGCCTCAAAGATATCGGTG 58.612 50.000 0.00 0.00 0.00 4.94
4398 4864 5.423015 GCAACTTTCAGAGACTCCATCATA 58.577 41.667 0.00 0.00 0.00 2.15
4405 4871 6.278172 TCAGAGACTCCATCATACATATGC 57.722 41.667 1.58 0.00 33.76 3.14
4408 4874 6.015282 AGAGACTCCATCATACATATGCTGA 58.985 40.000 1.58 6.82 33.01 4.26
4409 4875 6.035368 AGACTCCATCATACATATGCTGAC 57.965 41.667 9.96 0.00 33.01 3.51
4419 4885 2.289382 ACATATGCTGACGTGTCCACAA 60.289 45.455 1.58 0.00 0.00 3.33
4433 4899 1.093159 CCACAAAGGCATCTCAGCTC 58.907 55.000 0.00 0.00 34.17 4.09
4476 4942 7.890515 TCATATTGAGCAGATAGACCAACTAG 58.109 38.462 0.00 0.00 34.35 2.57
4478 4944 6.798427 ATTGAGCAGATAGACCAACTAGAA 57.202 37.500 0.00 0.00 34.35 2.10
4506 4972 8.183536 AGAAAAATGCAGAAATTTTGGACAAAC 58.816 29.630 6.93 0.00 39.20 2.93
4514 4980 2.500509 TTTTGGACAAACATCGCCAC 57.499 45.000 0.00 0.00 0.00 5.01
4528 4994 1.351017 TCGCCACTTGGAAGAGGAAAT 59.649 47.619 7.01 0.00 38.85 2.17
4551 5017 9.553064 AAATGTTTTGTGCAAATAAGGATAACA 57.447 25.926 0.00 0.00 0.00 2.41
4581 5047 3.492011 GCAAAAGCATGTCCAAGAACTTG 59.508 43.478 7.49 7.49 40.13 3.16
4587 5053 5.535333 AGCATGTCCAAGAACTTGAATTTG 58.465 37.500 14.99 8.81 42.93 2.32
4622 5088 3.486285 GCAGAAGCTTGAACTTGCC 57.514 52.632 2.10 0.00 37.91 4.52
4626 5092 1.876156 AGAAGCTTGAACTTGCCGAAG 59.124 47.619 2.10 0.00 35.07 3.79
4649 5115 3.425892 CGGAGAGCAAATGCAAAGAAGAG 60.426 47.826 8.28 0.00 45.16 2.85
4653 5119 2.230750 AGCAAATGCAAAGAAGAGAGCC 59.769 45.455 8.28 0.00 45.16 4.70
4671 5137 1.548081 CCATGTGATGGCAGTGGAAA 58.452 50.000 0.00 0.00 44.70 3.13
4747 5213 4.013050 AGGATTAGCTTGCTGGAAGAAAC 58.987 43.478 13.43 0.00 34.07 2.78
4770 5236 6.105333 ACTTTTGTGCAAATTAAAGACAGCA 58.895 32.000 7.86 0.00 33.12 4.41
4773 5239 2.979813 GTGCAAATTAAAGACAGCACCG 59.020 45.455 0.00 0.00 44.68 4.94
4814 5280 6.363167 TTGGAAAATCAATTGGATGAGCTT 57.637 33.333 5.42 0.00 36.02 3.74
4819 5285 7.551617 GGAAAATCAATTGGATGAGCTTGAATT 59.448 33.333 5.42 0.00 36.02 2.17
4821 5287 8.937634 AAATCAATTGGATGAGCTTGAATTAC 57.062 30.769 5.42 0.00 36.02 1.89
4829 5295 4.623932 TGAGCTTGAATTACACTCCAGT 57.376 40.909 0.00 0.00 0.00 4.00
4838 5304 5.769662 TGAATTACACTCCAGTCAAAGCATT 59.230 36.000 0.00 0.00 0.00 3.56
4842 5308 3.067106 CACTCCAGTCAAAGCATTACGT 58.933 45.455 0.00 0.00 0.00 3.57
4882 5348 3.057969 TGCATGTGGTGGAGAGTTTAG 57.942 47.619 0.00 0.00 0.00 1.85
4890 5356 3.830755 TGGTGGAGAGTTTAGTGTCCTAC 59.169 47.826 2.84 0.48 30.93 3.18
4892 5358 4.082136 GGTGGAGAGTTTAGTGTCCTACAG 60.082 50.000 2.84 0.00 30.93 2.74
4899 5365 5.794894 AGTTTAGTGTCCTACAGAACATGG 58.205 41.667 0.00 0.00 32.23 3.66
4902 5368 4.803098 AGTGTCCTACAGAACATGGTAC 57.197 45.455 0.00 0.00 0.00 3.34
4949 5415 3.541632 ACTGCTCAAGGAAAACGAAGAA 58.458 40.909 0.00 0.00 0.00 2.52
4961 5427 2.403252 ACGAAGAACTGGCTATTGGG 57.597 50.000 0.00 0.00 0.00 4.12
5162 5628 0.244994 GCGATGATCTGGTCCGCTAT 59.755 55.000 4.62 0.00 42.24 2.97
5212 5678 9.143631 CCTTCCATTTTGTCTGTAAATTTGATC 57.856 33.333 0.00 0.00 0.00 2.92
5326 5792 7.903995 AAATAGTGCCCAAATACAAACAATG 57.096 32.000 0.00 0.00 0.00 2.82
5330 5796 3.643320 TGCCCAAATACAAACAATGTGGA 59.357 39.130 0.00 0.00 43.77 4.02
5331 5797 4.244862 GCCCAAATACAAACAATGTGGAG 58.755 43.478 0.00 0.00 43.77 3.86
5346 5812 4.819105 TGTGGAGGTAGTCAAATAGGTG 57.181 45.455 0.00 0.00 0.00 4.00
5360 5826 1.200519 TAGGTGGTGGCCTGTGTATC 58.799 55.000 3.32 0.00 39.60 2.24
5389 5855 3.840666 TCATTGGGAGAGCTAGAAACACT 59.159 43.478 0.00 0.00 0.00 3.55
5392 5858 4.273148 TGGGAGAGCTAGAAACACTTTC 57.727 45.455 0.00 0.00 39.96 2.62
5405 5871 6.679327 GAAACACTTTCTGTTCCTTGTAGT 57.321 37.500 0.00 0.00 42.70 2.73
5406 5872 7.085052 GAAACACTTTCTGTTCCTTGTAGTT 57.915 36.000 0.00 0.00 42.70 2.24
5407 5873 7.462571 AAACACTTTCTGTTCCTTGTAGTTT 57.537 32.000 0.00 0.00 42.70 2.66
5408 5874 8.570068 AAACACTTTCTGTTCCTTGTAGTTTA 57.430 30.769 0.00 0.00 42.70 2.01
5455 5921 1.884579 AGGCTGAAGATGCAACAAGTG 59.115 47.619 0.00 0.00 0.00 3.16
5475 5941 3.632145 GTGTGAGTTTGGTGGTCTGAATT 59.368 43.478 0.00 0.00 0.00 2.17
5479 5945 4.520111 TGAGTTTGGTGGTCTGAATTCATG 59.480 41.667 8.96 3.70 0.00 3.07
5483 5949 3.420893 TGGTGGTCTGAATTCATGTTCC 58.579 45.455 8.96 9.48 0.00 3.62
5503 5969 3.763360 TCCAATCAGGTAATGTGGCTTTG 59.237 43.478 0.00 0.00 39.02 2.77
5509 5975 3.511146 CAGGTAATGTGGCTTTGGTGATT 59.489 43.478 0.00 0.00 0.00 2.57
5521 5987 4.759183 GCTTTGGTGATTCTCTTGTTCTCT 59.241 41.667 0.00 0.00 0.00 3.10
5551 6019 9.585099 TCCATTTAAGACATATTTCAACATTGC 57.415 29.630 0.00 0.00 0.00 3.56
5568 6036 6.178607 ACATTGCATTTTCTTCCCTCTTTT 57.821 33.333 0.00 0.00 0.00 2.27
5569 6037 5.993441 ACATTGCATTTTCTTCCCTCTTTTG 59.007 36.000 0.00 0.00 0.00 2.44
5571 6039 4.947645 TGCATTTTCTTCCCTCTTTTGTG 58.052 39.130 0.00 0.00 0.00 3.33
5573 6041 5.104982 TGCATTTTCTTCCCTCTTTTGTGTT 60.105 36.000 0.00 0.00 0.00 3.32
5574 6042 5.234972 GCATTTTCTTCCCTCTTTTGTGTTG 59.765 40.000 0.00 0.00 0.00 3.33
5575 6043 4.385358 TTTCTTCCCTCTTTTGTGTTGC 57.615 40.909 0.00 0.00 0.00 4.17
5576 6044 3.011566 TCTTCCCTCTTTTGTGTTGCA 57.988 42.857 0.00 0.00 0.00 4.08
5577 6045 3.565307 TCTTCCCTCTTTTGTGTTGCAT 58.435 40.909 0.00 0.00 0.00 3.96
5578 6046 3.318839 TCTTCCCTCTTTTGTGTTGCATG 59.681 43.478 0.00 0.00 0.00 4.06
5837 6306 2.529389 AGGTCCGGGGCTCAAACT 60.529 61.111 0.00 0.00 0.00 2.66
5846 6315 1.671379 GGCTCAAACTGGTCCGACC 60.671 63.158 10.96 10.96 39.22 4.79
5863 6332 0.468226 ACCCACTCACATGTGTCGTT 59.532 50.000 24.63 5.68 36.30 3.85
5866 6335 1.261354 CCACTCACATGTGTCGTTGTG 59.739 52.381 24.63 21.85 43.61 3.33
6089 6558 1.152118 TAGGATAGGGCCGCACCAT 60.152 57.895 15.66 0.00 42.05 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.827302 TCTATATCTCCCGCCTCTTGTTC 59.173 47.826 0.00 0.00 0.00 3.18
24 25 0.116143 AGTCCTGCCTCCTTCACTCT 59.884 55.000 0.00 0.00 0.00 3.24
53 54 2.930682 GAGCAGATCAAGAAACGTACCC 59.069 50.000 0.00 0.00 0.00 3.69
81 82 5.008712 CCGCATCTATCTAGACTGTACAACA 59.991 44.000 0.00 0.00 34.72 3.33
82 83 5.453648 CCGCATCTATCTAGACTGTACAAC 58.546 45.833 0.00 0.00 34.72 3.32
83 84 4.519350 CCCGCATCTATCTAGACTGTACAA 59.481 45.833 0.00 0.00 34.72 2.41
84 85 4.072839 CCCGCATCTATCTAGACTGTACA 58.927 47.826 0.00 0.00 34.72 2.90
85 86 4.073549 ACCCGCATCTATCTAGACTGTAC 58.926 47.826 0.00 0.00 34.72 2.90
86 87 4.325119 GACCCGCATCTATCTAGACTGTA 58.675 47.826 0.00 0.00 34.72 2.74
87 88 3.150767 GACCCGCATCTATCTAGACTGT 58.849 50.000 0.00 0.00 34.72 3.55
88 89 2.160615 CGACCCGCATCTATCTAGACTG 59.839 54.545 0.00 0.00 34.72 3.51
89 90 2.428491 CGACCCGCATCTATCTAGACT 58.572 52.381 0.00 0.00 34.72 3.24
90 91 1.469308 CCGACCCGCATCTATCTAGAC 59.531 57.143 0.00 0.00 34.72 2.59
91 92 1.822506 CCGACCCGCATCTATCTAGA 58.177 55.000 0.00 0.00 36.65 2.43
92 93 0.171455 GCCGACCCGCATCTATCTAG 59.829 60.000 0.00 0.00 0.00 2.43
93 94 1.583495 CGCCGACCCGCATCTATCTA 61.583 60.000 0.00 0.00 0.00 1.98
94 95 2.920645 CGCCGACCCGCATCTATCT 61.921 63.158 0.00 0.00 0.00 1.98
95 96 2.430921 CGCCGACCCGCATCTATC 60.431 66.667 0.00 0.00 0.00 2.08
96 97 3.991051 CCGCCGACCCGCATCTAT 61.991 66.667 0.00 0.00 0.00 1.98
112 113 4.023021 CCTACTAGTCCGATAACAAGAGCC 60.023 50.000 0.00 0.00 0.00 4.70
115 116 5.131642 TCTCCCTACTAGTCCGATAACAAGA 59.868 44.000 0.00 0.00 0.00 3.02
123 124 4.018597 AGAAACTTCTCCCTACTAGTCCGA 60.019 45.833 0.00 0.00 29.94 4.55
133 134 5.544176 TCATACAGAACAGAAACTTCTCCCT 59.456 40.000 0.00 0.00 34.74 4.20
138 139 7.715265 TCAACTCATACAGAACAGAAACTTC 57.285 36.000 0.00 0.00 0.00 3.01
139 140 8.682936 ATTCAACTCATACAGAACAGAAACTT 57.317 30.769 0.00 0.00 0.00 2.66
140 141 7.116948 CGATTCAACTCATACAGAACAGAAACT 59.883 37.037 0.00 0.00 0.00 2.66
141 142 7.230222 CGATTCAACTCATACAGAACAGAAAC 58.770 38.462 0.00 0.00 0.00 2.78
142 143 6.368791 CCGATTCAACTCATACAGAACAGAAA 59.631 38.462 0.00 0.00 0.00 2.52
143 144 5.869344 CCGATTCAACTCATACAGAACAGAA 59.131 40.000 0.00 0.00 0.00 3.02
144 145 5.185056 TCCGATTCAACTCATACAGAACAGA 59.815 40.000 0.00 0.00 0.00 3.41
145 146 5.410924 TCCGATTCAACTCATACAGAACAG 58.589 41.667 0.00 0.00 0.00 3.16
146 147 5.400066 TCCGATTCAACTCATACAGAACA 57.600 39.130 0.00 0.00 0.00 3.18
147 148 6.721571 TTTCCGATTCAACTCATACAGAAC 57.278 37.500 0.00 0.00 0.00 3.01
148 149 7.737972 TTTTTCCGATTCAACTCATACAGAA 57.262 32.000 0.00 0.00 0.00 3.02
173 174 6.780198 ATACCCAAAGTCATATACACCCAT 57.220 37.500 0.00 0.00 0.00 4.00
177 178 7.554835 TCCAACAATACCCAAAGTCATATACAC 59.445 37.037 0.00 0.00 0.00 2.90
187 188 3.356290 CCTCCTCCAACAATACCCAAAG 58.644 50.000 0.00 0.00 0.00 2.77
189 190 1.638589 CCCTCCTCCAACAATACCCAA 59.361 52.381 0.00 0.00 0.00 4.12
191 192 0.106669 GCCCTCCTCCAACAATACCC 60.107 60.000 0.00 0.00 0.00 3.69
192 193 0.106669 GGCCCTCCTCCAACAATACC 60.107 60.000 0.00 0.00 0.00 2.73
194 195 1.494721 GATGGCCCTCCTCCAACAATA 59.505 52.381 0.00 0.00 37.13 1.90
195 196 0.259938 GATGGCCCTCCTCCAACAAT 59.740 55.000 0.00 0.00 37.13 2.71
197 198 2.308722 GGATGGCCCTCCTCCAACA 61.309 63.158 19.19 0.00 37.13 3.33
199 200 1.309013 ATGGATGGCCCTCCTCCAA 60.309 57.895 25.48 7.87 40.54 3.53
202 203 3.165456 GGATGGATGGCCCTCCTC 58.835 66.667 25.48 19.12 43.50 3.71
233 237 6.366340 TGTGAAACTATTCCCAGGTTTGTTA 58.634 36.000 0.00 0.00 38.04 2.41
240 244 4.235079 TGGATGTGAAACTATTCCCAGG 57.765 45.455 0.00 0.00 38.04 4.45
241 245 5.711976 AGTTTGGATGTGAAACTATTCCCAG 59.288 40.000 0.00 0.00 40.96 4.45
246 250 6.015434 GGGTTCAGTTTGGATGTGAAACTATT 60.015 38.462 0.00 0.00 40.83 1.73
254 258 1.270550 GCTGGGTTCAGTTTGGATGTG 59.729 52.381 0.00 0.00 42.78 3.21
290 295 2.010145 GCTCCTGCTGTTATCGTCAA 57.990 50.000 0.00 0.00 36.03 3.18
308 313 6.072783 CCCTTCTAATAAAGCATAAGCAGAGC 60.073 42.308 0.00 0.00 45.49 4.09
335 340 1.473434 CCGCCTGATTGTTCTACCTCC 60.473 57.143 0.00 0.00 0.00 4.30
342 347 1.734465 CACTCTTCCGCCTGATTGTTC 59.266 52.381 0.00 0.00 0.00 3.18
358 363 2.727298 GCTCAATTTTCTCTGCGCACTC 60.727 50.000 5.66 0.00 0.00 3.51
375 399 0.386476 CTGCTTGCTTTTGTGGCTCA 59.614 50.000 0.00 0.00 0.00 4.26
400 424 4.096532 CGCTAGAGGTTTACTGATGTGAGA 59.903 45.833 0.00 0.00 0.00 3.27
429 453 2.030562 CGGTTCGGTTGCTGGAGT 59.969 61.111 0.00 0.00 0.00 3.85
446 470 5.389778 CAGCTTTTTGTTTTGGTTTGGTTC 58.610 37.500 0.00 0.00 0.00 3.62
534 558 7.792032 TCTATGGGTTTAGTGATTTAGTCCAG 58.208 38.462 0.00 0.00 0.00 3.86
567 661 9.670442 AGTATCTATGGGTTTAGTTTATCAGGA 57.330 33.333 0.00 0.00 0.00 3.86
607 701 6.988622 TGGTTTGAATATACGGGTTTAGTG 57.011 37.500 0.00 0.00 0.00 2.74
640 734 7.176589 AGACTACTCTGCTACTTGCTTATTT 57.823 36.000 0.00 0.00 43.37 1.40
675 780 9.061435 CTACATGATGTATATAGCAGCTAGCTA 57.939 37.037 18.86 16.68 44.81 3.32
676 781 7.014134 CCTACATGATGTATATAGCAGCTAGCT 59.986 40.741 12.68 12.68 43.78 3.32
677 782 7.144661 CCTACATGATGTATATAGCAGCTAGC 58.855 42.308 6.62 6.62 36.38 3.42
736 841 3.041211 AGCCTCATCCTTGCACAGTATA 58.959 45.455 0.00 0.00 0.00 1.47
749 854 3.072944 GGATATGCTTGTCAGCCTCATC 58.927 50.000 0.00 0.00 46.74 2.92
756 861 9.499479 AAACTAAGATATGGATATGCTTGTCAG 57.501 33.333 8.94 2.60 0.00 3.51
758 863 9.277783 ACAAACTAAGATATGGATATGCTTGTC 57.722 33.333 0.00 0.00 0.00 3.18
796 901 6.591448 CACTCATTCATTAAGCAGTAGTGACA 59.409 38.462 0.42 0.00 35.05 3.58
797 902 6.813649 TCACTCATTCATTAAGCAGTAGTGAC 59.186 38.462 0.42 0.00 36.75 3.67
798 903 6.935167 TCACTCATTCATTAAGCAGTAGTGA 58.065 36.000 0.42 0.00 38.68 3.41
799 904 7.332926 ACTTCACTCATTCATTAAGCAGTAGTG 59.667 37.037 0.00 0.00 34.54 2.74
800 905 7.332926 CACTTCACTCATTCATTAAGCAGTAGT 59.667 37.037 0.00 0.00 0.00 2.73
819 924 1.014564 GGACCTACTGCGCACTTCAC 61.015 60.000 5.66 0.00 0.00 3.18
821 926 0.037232 AAGGACCTACTGCGCACTTC 60.037 55.000 5.66 0.00 0.00 3.01
823 928 1.185618 TCAAGGACCTACTGCGCACT 61.186 55.000 5.66 0.00 0.00 4.40
824 929 0.320421 TTCAAGGACCTACTGCGCAC 60.320 55.000 5.66 0.00 0.00 5.34
825 930 0.320421 GTTCAAGGACCTACTGCGCA 60.320 55.000 10.98 10.98 0.00 6.09
826 931 1.019805 GGTTCAAGGACCTACTGCGC 61.020 60.000 0.00 0.00 36.73 6.09
827 932 3.139029 GGTTCAAGGACCTACTGCG 57.861 57.895 0.00 0.00 36.73 5.18
834 939 2.861147 AAGCAGTAGGTTCAAGGACC 57.139 50.000 0.00 0.00 40.11 4.46
835 940 7.916914 TTAATTAAGCAGTAGGTTCAAGGAC 57.083 36.000 0.00 0.00 36.70 3.85
837 942 7.241376 CGTTTAATTAAGCAGTAGGTTCAAGG 58.759 38.462 11.90 0.00 36.70 3.61
838 943 7.094933 ACCGTTTAATTAAGCAGTAGGTTCAAG 60.095 37.037 11.90 0.00 36.70 3.02
842 947 6.149973 GGAACCGTTTAATTAAGCAGTAGGTT 59.850 38.462 16.38 16.38 40.45 3.50
843 948 5.645067 GGAACCGTTTAATTAAGCAGTAGGT 59.355 40.000 11.90 7.87 0.00 3.08
845 950 6.817140 AGAGGAACCGTTTAATTAAGCAGTAG 59.183 38.462 11.90 1.22 0.00 2.57
846 951 6.704310 AGAGGAACCGTTTAATTAAGCAGTA 58.296 36.000 11.90 0.00 0.00 2.74
847 952 5.557866 AGAGGAACCGTTTAATTAAGCAGT 58.442 37.500 11.90 4.27 0.00 4.40
848 953 6.072673 ACAAGAGGAACCGTTTAATTAAGCAG 60.073 38.462 11.90 3.67 0.00 4.24
849 954 5.766174 ACAAGAGGAACCGTTTAATTAAGCA 59.234 36.000 11.90 0.00 0.00 3.91
850 955 6.072893 TCACAAGAGGAACCGTTTAATTAAGC 60.073 38.462 2.18 2.18 0.00 3.09
851 956 7.041644 TGTCACAAGAGGAACCGTTTAATTAAG 60.042 37.037 0.00 0.00 0.00 1.85
852 957 6.766944 TGTCACAAGAGGAACCGTTTAATTAA 59.233 34.615 0.00 0.00 0.00 1.40
853 958 6.289834 TGTCACAAGAGGAACCGTTTAATTA 58.710 36.000 0.00 0.00 0.00 1.40
856 961 4.139859 TGTCACAAGAGGAACCGTTTAA 57.860 40.909 0.00 0.00 0.00 1.52
857 962 3.823281 TGTCACAAGAGGAACCGTTTA 57.177 42.857 0.00 0.00 0.00 2.01
858 963 2.702592 TGTCACAAGAGGAACCGTTT 57.297 45.000 0.00 0.00 0.00 3.60
859 964 2.702592 TTGTCACAAGAGGAACCGTT 57.297 45.000 0.00 0.00 0.00 4.44
861 966 2.878406 ACAATTGTCACAAGAGGAACCG 59.122 45.455 4.92 0.00 0.00 4.44
862 967 4.580580 AGAACAATTGTCACAAGAGGAACC 59.419 41.667 12.39 0.00 0.00 3.62
863 968 5.278022 GGAGAACAATTGTCACAAGAGGAAC 60.278 44.000 12.39 0.00 0.00 3.62
864 969 4.821805 GGAGAACAATTGTCACAAGAGGAA 59.178 41.667 12.39 0.00 0.00 3.36
865 970 4.103153 AGGAGAACAATTGTCACAAGAGGA 59.897 41.667 12.39 0.00 0.00 3.71
866 971 4.214971 CAGGAGAACAATTGTCACAAGAGG 59.785 45.833 12.39 0.00 0.00 3.69
867 972 4.214971 CCAGGAGAACAATTGTCACAAGAG 59.785 45.833 12.39 0.08 0.00 2.85
870 975 4.163441 TCCAGGAGAACAATTGTCACAA 57.837 40.909 12.39 0.00 0.00 3.33
871 976 3.855255 TCCAGGAGAACAATTGTCACA 57.145 42.857 12.39 0.00 0.00 3.58
883 1339 4.916041 AATTCACAACTCATCCAGGAGA 57.084 40.909 0.00 0.00 38.30 3.71
884 1340 7.121759 ACAATTAATTCACAACTCATCCAGGAG 59.878 37.037 0.00 0.00 40.79 3.69
888 1344 9.829507 AAAAACAATTAATTCACAACTCATCCA 57.170 25.926 0.00 0.00 0.00 3.41
918 1374 1.668751 GGTGAACTGTGCAAGAACGAA 59.331 47.619 0.00 0.00 0.00 3.85
960 1420 3.039011 ACTATATCCACACCCTTCGCTT 58.961 45.455 0.00 0.00 0.00 4.68
969 1429 4.202253 TGCTGATGGTCACTATATCCACAC 60.202 45.833 0.00 0.00 33.91 3.82
986 1446 0.461516 CGTCATGCTGGACTGCTGAT 60.462 55.000 0.00 0.00 35.63 2.90
1036 1496 9.190317 GAGAATACCCTTTTTGTTCTCCAATAT 57.810 33.333 0.00 0.00 39.06 1.28
1092 1558 6.156748 TCTACAGTCTAGAGCACAAAAACA 57.843 37.500 0.00 0.00 0.00 2.83
1102 1568 3.547746 GTGGTCCCTCTACAGTCTAGAG 58.452 54.545 0.00 0.00 40.44 2.43
1135 1601 5.822519 TGGAGAATAATTTGACGAATGGAGG 59.177 40.000 0.00 0.00 0.00 4.30
1195 1661 9.617975 GATCAGGCAAAATATAAGCTAAATCAC 57.382 33.333 0.00 0.00 0.00 3.06
1274 1740 8.106462 TCATCAACACCTGAGGAAATATAACAA 58.894 33.333 4.99 0.00 41.74 2.83
1279 1745 6.566079 TCTCATCAACACCTGAGGAAATAT 57.434 37.500 4.99 0.00 43.91 1.28
1280 1746 6.373005 TTCTCATCAACACCTGAGGAAATA 57.627 37.500 4.99 0.00 43.91 1.40
1472 1938 2.547855 GGAACTGTGCCCAACATTTTCC 60.548 50.000 0.00 4.25 40.77 3.13
1620 2086 2.450609 TCCGTACTTTGCTCTTCACC 57.549 50.000 0.00 0.00 0.00 4.02
1621 2087 2.157863 GCTTCCGTACTTTGCTCTTCAC 59.842 50.000 0.00 0.00 0.00 3.18
1622 2088 2.224185 TGCTTCCGTACTTTGCTCTTCA 60.224 45.455 0.00 0.00 0.00 3.02
1623 2089 2.413453 CTGCTTCCGTACTTTGCTCTTC 59.587 50.000 0.00 0.00 0.00 2.87
1624 2090 2.417719 CTGCTTCCGTACTTTGCTCTT 58.582 47.619 0.00 0.00 0.00 2.85
1625 2091 1.338200 CCTGCTTCCGTACTTTGCTCT 60.338 52.381 0.00 0.00 0.00 4.09
1626 2092 1.079503 CCTGCTTCCGTACTTTGCTC 58.920 55.000 0.00 0.00 0.00 4.26
1627 2093 0.321653 CCCTGCTTCCGTACTTTGCT 60.322 55.000 0.00 0.00 0.00 3.91
1628 2094 0.321298 TCCCTGCTTCCGTACTTTGC 60.321 55.000 0.00 0.00 0.00 3.68
1629 2095 2.403252 ATCCCTGCTTCCGTACTTTG 57.597 50.000 0.00 0.00 0.00 2.77
1630 2096 2.304761 TGAATCCCTGCTTCCGTACTTT 59.695 45.455 0.00 0.00 0.00 2.66
1631 2097 1.906574 TGAATCCCTGCTTCCGTACTT 59.093 47.619 0.00 0.00 0.00 2.24
1636 2102 1.661341 CTTCTGAATCCCTGCTTCCG 58.339 55.000 0.00 0.00 0.00 4.30
1718 2184 6.183347 AGTAGCTTCTTTGTCCATTATTGCT 58.817 36.000 0.00 0.00 0.00 3.91
1721 2187 9.384764 GAACTAGTAGCTTCTTTGTCCATTATT 57.615 33.333 0.00 0.00 0.00 1.40
1726 2192 5.538813 TCTGAACTAGTAGCTTCTTTGTCCA 59.461 40.000 0.00 0.00 0.00 4.02
1739 2205 6.765989 ACAAGTTTGCAACATCTGAACTAGTA 59.234 34.615 0.00 0.00 0.00 1.82
1760 2226 5.167121 AGATGTTCGTTCTCTGATGACAAG 58.833 41.667 0.00 0.00 0.00 3.16
1768 2234 7.535258 CCAACAATTTTAGATGTTCGTTCTCTG 59.465 37.037 0.00 0.00 37.66 3.35
1775 2241 7.114811 CCTTCAACCAACAATTTTAGATGTTCG 59.885 37.037 0.00 0.00 37.66 3.95
1812 2278 0.254178 TTCAGGGATTCTGCTGCCTC 59.746 55.000 0.00 0.00 43.06 4.70
1861 2327 2.139118 GCTTCTCGCCAGATAACATCC 58.861 52.381 0.00 0.00 0.00 3.51
1864 2330 2.760634 TTGCTTCTCGCCAGATAACA 57.239 45.000 0.00 0.00 38.05 2.41
1885 2351 4.398319 GTCATCCCTCTCTTTTTCCACAA 58.602 43.478 0.00 0.00 0.00 3.33
1887 2353 3.009584 AGGTCATCCCTCTCTTTTTCCAC 59.990 47.826 0.00 0.00 40.71 4.02
1888 2354 3.009473 CAGGTCATCCCTCTCTTTTTCCA 59.991 47.826 0.00 0.00 43.86 3.53
1889 2355 3.264450 TCAGGTCATCCCTCTCTTTTTCC 59.736 47.826 0.00 0.00 43.86 3.13
2000 2466 0.111253 AGTGGGCCTTCTCAAGTTGG 59.889 55.000 4.53 0.00 0.00 3.77
2018 2484 4.388469 GTCTGCACTTCTTTCTCAGCTAAG 59.612 45.833 0.00 0.00 0.00 2.18
2055 2521 7.224522 AGTTCTCATTCTTGGATTTTTGGAG 57.775 36.000 0.00 0.00 0.00 3.86
2079 2545 2.815503 CACATTCCACTGACAGCATCAA 59.184 45.455 1.25 0.00 36.69 2.57
2152 2618 4.526970 TCTTGTTTCAGCAAGAGTTTCCT 58.473 39.130 2.23 0.00 46.74 3.36
2176 2642 7.120285 TCTCTGCAATCAAGGAGTCATTTTTAG 59.880 37.037 0.00 0.00 0.00 1.85
2201 2667 4.024809 AGCTTGCTTTCGAGTAAACTGTTC 60.025 41.667 0.00 0.00 0.00 3.18
2213 2679 4.618489 CCTAAATGTTGAAGCTTGCTTTCG 59.382 41.667 2.10 0.00 0.00 3.46
2230 2696 4.844348 ACCATCTATCTCCACCCCTAAAT 58.156 43.478 0.00 0.00 0.00 1.40
2257 2723 4.161189 TCATTAGCTCCTCTTTCTCCACTG 59.839 45.833 0.00 0.00 0.00 3.66
2467 2933 1.280133 ACTGCTTTAGCTCTGATGCCA 59.720 47.619 3.10 0.00 42.66 4.92
2546 3012 6.767902 GGTCTTCATTATCCTTCTGCATAACA 59.232 38.462 0.00 0.00 0.00 2.41
2706 3172 0.034670 GCTCTGAGGCCTTCAATGGT 60.035 55.000 6.77 0.00 34.81 3.55
2743 3209 7.094720 CCTCCTCGTGTACTATAACCTCATTAG 60.095 44.444 0.00 0.00 0.00 1.73
2798 3264 0.607217 TGACGTAAGCCTCCGACTGA 60.607 55.000 0.00 0.00 45.62 3.41
2812 3278 0.318762 GCTCTGGAGGTTCTTGACGT 59.681 55.000 0.00 0.00 0.00 4.34
2846 3312 6.347160 GCTGGAAAAGTGAAATTTCATTCTGC 60.347 38.462 23.05 21.74 39.73 4.26
2891 3357 5.590663 CCTACCCAAGCTAGAATTTTTCTCC 59.409 44.000 0.00 0.00 41.14 3.71
2911 3377 2.481289 AACTTCTTCCAGCTGCCTAC 57.519 50.000 8.66 0.00 0.00 3.18
2912 3378 3.838317 TCTTAACTTCTTCCAGCTGCCTA 59.162 43.478 8.66 0.00 0.00 3.93
2960 3426 7.725251 TGATTTGTTGCTTTTCTCCTTGTAAT 58.275 30.769 0.00 0.00 0.00 1.89
2983 3449 3.759618 TGACTGCTGCAAATCATCAATGA 59.240 39.130 11.14 0.00 41.70 2.57
3023 3489 2.148768 TGCTCTAACTCACGTTCGAGA 58.851 47.619 9.68 0.00 42.45 4.04
3072 3538 4.069300 TCTGCAGATCTTCATTGGCTAG 57.931 45.455 13.74 0.00 0.00 3.42
3074 3540 3.054582 TCTTCTGCAGATCTTCATTGGCT 60.055 43.478 19.04 0.00 0.00 4.75
3206 3672 5.426509 TCTTAGATTCTTGATGGAAGCCTCA 59.573 40.000 0.00 0.00 32.74 3.86
3238 3704 2.662006 TTGCTCTCGTCCTTGATCTG 57.338 50.000 0.00 0.00 0.00 2.90
3416 3882 6.394345 AACTCTATCTCCAAGTTCCCAATT 57.606 37.500 0.00 0.00 0.00 2.32
3489 3955 2.548875 GGCAGAGATGTGCTTCTGTAG 58.451 52.381 1.75 0.00 43.45 2.74
3498 3964 1.153489 CGGTCAGGGCAGAGATGTG 60.153 63.158 0.00 0.00 0.00 3.21
3508 3974 1.732259 CGTTGAATTCTTCGGTCAGGG 59.268 52.381 7.05 0.00 0.00 4.45
3533 3999 1.163554 CCTTCTGCAACTCAGCCTTC 58.836 55.000 0.00 0.00 42.56 3.46
3605 4071 6.120507 AGGTTCTTGATAGAAAACTCTGCT 57.879 37.500 0.00 0.00 41.86 4.24
3635 4101 6.078202 TCATCCTTTAACTGAGCTATCTCG 57.922 41.667 0.00 0.00 42.26 4.04
3656 4122 8.394971 TGTTTTCTAGCTGAATTGAAAGATCA 57.605 30.769 0.00 0.00 34.24 2.92
3755 4221 7.606456 TGTAACTCTGACAGAACTGTTTCTTTT 59.394 33.333 12.29 3.87 45.05 2.27
3789 4255 4.130118 TCAAAGTTCCTCACAGAAGCTTC 58.870 43.478 19.11 19.11 0.00 3.86
3857 4323 6.016108 TGTTCTGTTCTGATTCATCATTTGCA 60.016 34.615 0.00 0.00 36.02 4.08
3873 4339 4.044426 GTCAAGGCACATTTGTTCTGTTC 58.956 43.478 0.00 0.00 0.00 3.18
3889 4355 6.241645 ACTTCTTCTAATTTCTGGGTCAAGG 58.758 40.000 0.00 0.00 0.00 3.61
3969 4435 6.053650 ACTCTGACTGTTTTAGTTGGGTTAC 58.946 40.000 0.00 0.00 40.53 2.50
4019 4485 2.191400 TCCTCCTTCAGCTGTGCTATT 58.809 47.619 14.67 0.00 36.40 1.73
4162 4628 6.964908 TCTTTCGCATTACTGTTCATTTCAA 58.035 32.000 0.00 0.00 0.00 2.69
4202 4668 6.499699 TGGCCTTCTGAGATGACAATATATCT 59.500 38.462 3.32 0.00 36.41 1.98
4280 4746 9.118300 ACTCTATCTTCAAAATCATTCATGGAC 57.882 33.333 0.00 0.00 0.00 4.02
4292 4758 9.832445 ACTTTCTGTGTAACTCTATCTTCAAAA 57.168 29.630 0.00 0.00 38.04 2.44
4311 4777 5.645067 TGGTAGCATGATCTGAAACTTTCTG 59.355 40.000 0.00 2.95 0.00 3.02
4346 4812 0.612229 CTTTGAGGCTCTGCTGGAGA 59.388 55.000 16.72 0.00 44.45 3.71
4362 4828 4.331968 TGAAAGTTGCCACCGATATCTTT 58.668 39.130 0.34 0.00 0.00 2.52
4364 4830 3.197766 TCTGAAAGTTGCCACCGATATCT 59.802 43.478 0.34 0.00 33.76 1.98
4374 4840 2.550830 TGGAGTCTCTGAAAGTTGCC 57.449 50.000 0.00 0.00 33.76 4.52
4398 4864 1.275010 TGTGGACACGTCAGCATATGT 59.725 47.619 4.29 0.00 0.00 2.29
4405 4871 0.813610 TGCCTTTGTGGACACGTCAG 60.814 55.000 0.00 0.00 38.35 3.51
4408 4874 0.108585 AGATGCCTTTGTGGACACGT 59.891 50.000 0.00 0.00 38.35 4.49
4409 4875 0.798776 GAGATGCCTTTGTGGACACG 59.201 55.000 0.00 0.00 38.35 4.49
4433 4899 9.098355 TCAATATGATTTTTCTTGAGTACCTCG 57.902 33.333 0.00 0.00 32.35 4.63
4468 4934 6.299141 TCTGCATTTTTCTCTTCTAGTTGGT 58.701 36.000 0.00 0.00 0.00 3.67
4476 4942 8.278408 GTCCAAAATTTCTGCATTTTTCTCTTC 58.722 33.333 0.00 0.00 34.70 2.87
4478 4944 7.274447 TGTCCAAAATTTCTGCATTTTTCTCT 58.726 30.769 0.00 0.00 34.70 3.10
4506 4972 0.250234 TCCTCTTCCAAGTGGCGATG 59.750 55.000 2.97 0.00 39.06 3.84
4514 4980 4.746611 GCACAAAACATTTCCTCTTCCAAG 59.253 41.667 0.00 0.00 0.00 3.61
4528 4994 7.492524 TGTGTTATCCTTATTTGCACAAAACA 58.507 30.769 0.00 0.00 33.28 2.83
4622 5088 1.061570 GCATTTGCTCTCCGCTTCG 59.938 57.895 0.00 0.00 40.11 3.79
4626 5092 0.523072 TCTTTGCATTTGCTCTCCGC 59.477 50.000 3.94 0.00 42.66 5.54
4653 5119 1.887854 TGTTTCCACTGCCATCACATG 59.112 47.619 0.00 0.00 0.00 3.21
4665 5131 5.853282 CGATCTCTGTTTTTGATGTTTCCAC 59.147 40.000 0.00 0.00 0.00 4.02
4671 5137 3.814842 TGCACGATCTCTGTTTTTGATGT 59.185 39.130 0.00 0.00 0.00 3.06
4747 5213 6.413269 GTGCTGTCTTTAATTTGCACAAAAG 58.587 36.000 10.44 0.00 46.64 2.27
4770 5236 2.581216 TTAGAGACCACTGACTCGGT 57.419 50.000 0.00 0.00 38.17 4.69
4773 5239 5.407407 TCCAATTTAGAGACCACTGACTC 57.593 43.478 0.00 0.00 34.09 3.36
4814 5280 4.713553 TGCTTTGACTGGAGTGTAATTCA 58.286 39.130 0.00 0.00 0.00 2.57
4819 5285 4.242475 CGTAATGCTTTGACTGGAGTGTA 58.758 43.478 0.00 0.00 0.00 2.90
4821 5287 3.067106 ACGTAATGCTTTGACTGGAGTG 58.933 45.455 0.00 0.00 0.00 3.51
4838 5304 2.373540 AGCGGTTAATGAAGCACGTA 57.626 45.000 0.00 0.00 32.32 3.57
4842 5308 3.312421 GCAGATAAGCGGTTAATGAAGCA 59.688 43.478 20.64 0.00 32.32 3.91
4882 5348 4.243270 GTGTACCATGTTCTGTAGGACAC 58.757 47.826 0.00 0.00 0.00 3.67
4890 5356 6.605849 CAAGAGAATTGTGTACCATGTTCTG 58.394 40.000 12.72 0.00 31.98 3.02
4892 5358 5.182001 AGCAAGAGAATTGTGTACCATGTTC 59.818 40.000 0.00 0.00 0.00 3.18
4949 5415 3.330701 TCTTTCTCAACCCAATAGCCAGT 59.669 43.478 0.00 0.00 0.00 4.00
4961 5427 8.932945 ACATTTCCTTTTCTTTCTTTCTCAAC 57.067 30.769 0.00 0.00 0.00 3.18
5063 5529 2.165234 CTGCACTCTAGCTGCTAGTTCA 59.835 50.000 29.97 21.74 35.72 3.18
5162 5628 1.670674 GGACGGTTGTGACTGCGAATA 60.671 52.381 0.00 0.00 35.46 1.75
5212 5678 5.247507 TGACTGACAATGAACTTTTGGTG 57.752 39.130 0.00 0.00 0.00 4.17
5244 5710 9.447040 CTAATGATGTTCACAGATAAAATGCAG 57.553 33.333 0.00 0.00 0.00 4.41
5287 5753 9.295825 TGGGCACTATTTATGATACATTAAAGG 57.704 33.333 0.00 0.00 0.00 3.11
5311 5777 5.467035 ACCTCCACATTGTTTGTATTTGG 57.533 39.130 0.00 0.00 36.57 3.28
5326 5792 3.518303 ACCACCTATTTGACTACCTCCAC 59.482 47.826 0.00 0.00 0.00 4.02
5330 5796 2.238898 GCCACCACCTATTTGACTACCT 59.761 50.000 0.00 0.00 0.00 3.08
5331 5797 2.640184 GCCACCACCTATTTGACTACC 58.360 52.381 0.00 0.00 0.00 3.18
5346 5812 2.172717 ACAATAGGATACACAGGCCACC 59.827 50.000 5.01 0.00 41.41 4.61
5360 5826 3.853355 AGCTCTCCCAATGACAATAGG 57.147 47.619 0.00 0.00 0.00 2.57
5392 5858 9.838339 AGGATGATAATAAACTACAAGGAACAG 57.162 33.333 0.00 0.00 0.00 3.16
5428 5894 3.204306 TGCATCTTCAGCCTCTATTGG 57.796 47.619 0.00 0.00 0.00 3.16
5429 5895 3.943381 TGTTGCATCTTCAGCCTCTATTG 59.057 43.478 0.00 0.00 0.00 1.90
5430 5896 4.226427 TGTTGCATCTTCAGCCTCTATT 57.774 40.909 0.00 0.00 0.00 1.73
5433 5899 2.224719 ACTTGTTGCATCTTCAGCCTCT 60.225 45.455 0.00 0.00 0.00 3.69
5440 5906 4.558538 AACTCACACTTGTTGCATCTTC 57.441 40.909 0.00 0.00 0.00 2.87
5445 5911 2.094803 CACCAAACTCACACTTGTTGCA 60.095 45.455 0.00 0.00 0.00 4.08
5455 5921 3.882888 TGAATTCAGACCACCAAACTCAC 59.117 43.478 3.38 0.00 0.00 3.51
5475 5941 4.949238 CCACATTACCTGATTGGAACATGA 59.051 41.667 0.00 0.00 39.30 3.07
5479 5945 3.356290 AGCCACATTACCTGATTGGAAC 58.644 45.455 0.00 0.00 39.71 3.62
5483 5949 3.511146 ACCAAAGCCACATTACCTGATTG 59.489 43.478 0.00 0.00 0.00 2.67
5503 5969 6.263168 TGGAAAAAGAGAACAAGAGAATCACC 59.737 38.462 0.00 0.00 37.82 4.02
5509 5975 9.627123 TCTTAAATGGAAAAAGAGAACAAGAGA 57.373 29.630 0.00 0.00 0.00 3.10
5551 6019 5.234972 GCAACACAAAAGAGGGAAGAAAATG 59.765 40.000 0.00 0.00 0.00 2.32
5616 6085 1.890979 CCGCATGCATCTCCCAGAC 60.891 63.158 19.57 0.00 0.00 3.51
5819 6288 2.046217 GTTTGAGCCCCGGACCTC 60.046 66.667 0.73 8.83 0.00 3.85
5837 6306 1.535444 ATGTGAGTGGGTCGGACCA 60.535 57.895 27.32 11.77 41.02 4.02
5846 6315 1.581934 ACAACGACACATGTGAGTGG 58.418 50.000 31.94 26.34 43.72 4.00
5866 6335 2.047179 GACCAGTGGAAGACGGCC 60.047 66.667 18.40 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.